Citrus Sinensis ID: 039228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
KLKSYKCLLEYRLESHRFLHDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRAPKLKASSSRKE
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccHHcccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEcHHHHHHHHccccHHcccccccccEEEEEEccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHcHEEEcccccccHcHccHHHEccccccccEEEEEEEEEccccccHHHHHcccccccccHHHHHEEEEHHHcccccccccccccHHHHHHHHHHHHHcHHHHHcHHHHccccHHHcccHHHcHHccccccHHHHHHHHHHHHHHccccHcHcccHHHHHHHHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
KLKSYKCLLEYRLESHrflhdcsmnqsnhsnklnleeygfkkrrgpskqplrltlrNAIPKEYYESLlkatdgfplinligvgsfdavyQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELilhcdpkpsnvlldndlfahigdFELARfrqevsnptqsssngvrrtigytaldydlgsevstngdayNYGILLLEMVtrrkpidfmfegdlnlhnfarmafpnRVMDIVNLVLLndnkvlagtnsnmlrkTKMNSRLECLIFMVRIGAAcsmgssqdrmnvpnavhdlqsvnnillpETVFKsltnnrapklkasssrke
Flexible Loop (DISEMBL)
klksykclLEYRLESHrflhdcsmnqsnhsnklNLEEYgfkkrrgpskqplrltlRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRqevsnptqsssngvrrtIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKvlagtnsnmlrktKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETvfksltnnrapklkasssrke
Low Complexity Region (SEG)
KLKSYKCLLEYRLESHRFLHDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIvnlvllndnkvlAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRAPKLKASSSRKE
Disordered region (IsUnstruct)
****YKCLLEYRLESHRFLHDC*****************************RLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR*************VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMG*********NAVHDLQSVNNILLPETVFK******************
Disordered Region (DISOPRED)
*************ESHRFLHDCSMNQSNHSNKLNLEEYGF*******************PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ******SFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR*************VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN***************************
Disordered Region (DISEMBL)
KLKSYKCLLEYRLESHRFLHDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE**********GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRA***********
Disordered Region (DISPRO)
**KSYKCLLEYRLE******************************************NAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KLKSYKCLLEYRLESHRFLHDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRAPKLKASSSRKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.772	0.272	0.372	2e-52
Q9SD62	1025	Putative receptor-like pr	no	no	0.716	0.248	0.369	3e-47
C0LGT6	1031	LRR receptor-like serine/	no	no	0.679	0.234	0.371	3e-47
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.721	0.262	0.295	8e-33
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.716	0.213	0.300	4e-26
Q9FFW5	681	Proline-rich receptor-lik	no	no	0.530	0.277	0.329	2e-25
Q9FL28	1173	LRR receptor-like serine/	no	no	0.575	0.174	0.305	7e-25
Q9S7I6	1151	LRR receptor-like serine/	no	no	0.530	0.164	0.339	9e-25
Q9SX31	708	Proline-rich receptor-lik	no	no	0.592	0.298	0.325	1e-24
Q9LFH9	715	L-type lectin-domain cont	no	no	0.660	0.328	0.303	1e-24

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  206 bits (524), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 175/341 (51%), Gaps = 66/341 (19%)

Query: 41  KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVV 100
           +K+   +  P   TL     K  Y  L  AT+GF   N++G GSF  VY+ +    + VV
Sbjct: 669 RKKNKETNNPTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVV 728

Query: 101 AIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS------------------------ 136
           A+KVL++Q +GA KSFMAEC++LK+I HRNLV+ ++                        
Sbjct: 729 AVKVLNMQRRGAMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFRALIYEFMPNGS 788

Query: 137 ---------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLD 169
                                      IAIDVAS LDYLH HC E I HCD KPSNVLLD
Sbjct: 789 LDMWLHPEEVEEIHRPSRTLTLLERLNIAIDVASVLDYLHVHCHEPIAHCDLKPSNVLLD 848

Query: 170 NDLFAHIGDFELARFR---QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYG 226
           +DL AH+ DF LAR      E S   Q SS GVR TIGY A +Y +G + S NGD Y++G
Sbjct: 849 DDLTAHVSDFGLARLLLKFDEESFFNQLSSAGVRGTIGYAAPEYGVGGQPSINGDVYSFG 908

Query: 227 ILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRK 286
           ILLLEM T ++P + +F G+  L+++ + A P R++DIV+  +L+    +          
Sbjct: 909 ILLLEMFTGKRPTNELFGGNFTLNSYTKSALPERILDIVDESILHIGLRVG--------- 959

Query: 287 TKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV 327
                 +ECL  +  +G  C   S  +R+     V +L S+
Sbjct: 960 ---FPVVECLTMVFEVGLRCCEESPMNRLATSIVVKELISI 997

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/322 (36%), Positives = 163/322 (50%), Gaps = 67/322 (20%)

Query: 61   KEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAEC 120
            K  Y+ L K T GF   NLIG G+F AV++G        VAIKVL++  +GA+KSF+AEC
Sbjct: 706  KISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNLCKRGAAKSFIAEC 765

Query: 121  KALKNICHRNLVRFISI------------------------------------------- 137
            +AL  I HRNLV+ ++I                                           
Sbjct: 766  EALGGIRHRNLVKLVTICSSSDFEGNDFRALVYEFMPNGNLDMWLHPDEIEETGNPSRTL 825

Query: 138  --------AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS 189
                    AIDVASAL YLH +C   I HCD KPSN+LLD DL AH+ DF LA+   +  
Sbjct: 826  GLFARLNIAIDVASALVYLHTYCHNPIAHCDIKPSNILLDKDLTAHVSDFGLAQLLLKFD 885

Query: 190  NPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
              T   Q SS GVR TIGY A +Y +G   S  GD Y++GI+LLE+ T ++P + +F   
Sbjct: 886  RDTFHIQFSSAGVRGTIGYAAPEYGMGGHPSIMGDVYSFGIVLLEIFTGKRPTNKLFVDG 945

Query: 247  LNLHNFARMAFPNR-VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAA 305
            L LH+F + A   R  +DI       D  +L G  +         + +ECL  + R+G +
Sbjct: 946  LTLHSFTKSALQKRQALDIT------DETILRGAYAQHF------NMVECLTLVFRVGVS 993

Query: 306  CSMGSSQDRMNVPNAVHDLQSV 327
            CS  S  +R+++  A+  L S+
Sbjct: 994  CSEESPVNRISMAEAISKLVSI 1015

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/323 (37%), Positives = 161/323 (49%), Gaps = 81/323 (25%)

Query: 61  KEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAEC 120
           K  YE L  AT  F   NLIG G+F  V++G+      +VA+KVL++   GA+KSFMAEC
Sbjct: 699 KVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAEC 758

Query: 121 KALKNICHRNLVRFIS-------------------------------------------- 136
           +  K I HRNLV+ I+                                            
Sbjct: 759 ETFKGIRHRNLVKLITVCSSLDSEGNDFRALVYEFMPKGSLDMWLQLEDLERVNDHSRSL 818

Query: 137 -------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF----- 184
                  IAIDVASAL+YLH HC + + HCD KPSN+LLD+DL AH+ DF LA+      
Sbjct: 819 TPAEKLNIAIDVASALEYLHVHCHDPVAHCDIKPSNILLDDDLTAHVSDFGLAQLLYKYD 878

Query: 185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFE 244
           R+   N  Q SS GVR TIGY A +Y +G + S  GD Y++GILLLEM + +KP D  F 
Sbjct: 879 RESFLN--QFSSAGVRGTIGYAAPEYGMGGQPSIQGDVYSFGILLLEMFSGKKPTDESFA 936

Query: 245 GDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGA 304
           GD NLH++ +                    +L+G  S+       N+  E L  ++++G 
Sbjct: 937 GDYNLHSYTK-------------------SILSGCTSS----GGSNAIDEGLRLVLQVGI 973

Query: 305 ACSMGSSQDRMNVPNAVHDLQSV 327
            CS    +DRM    AV +L S+
Sbjct: 974 KCSEEYPRDRMRTDEAVRELISI 996

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  141 bits (355), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 148/315 (46%), Gaps = 58/315 (18%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMA 118
           P+  Y+ L+ AT GF   +LIG G F  VY+GV   N   VA+KVL  +     S SF  
Sbjct: 647 PRISYQQLIAATGGFNASSLIGSGRFGHVYKGVLR-NNTKVAVKVLDPKTALEFSGSFKR 705

Query: 119 ECKALKNICHRNLVRFIS-----------------------------------------I 137
           EC+ LK   HRNL+R I+                                         I
Sbjct: 706 ECQILKRTRHRNLIRIITTCSKPGFNALVLPLMPNGSLERHLYPGEYSSKNLDLIQLVNI 765

Query: 138 AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS--- 194
             DVA  + YLHH+    ++HCD KPSN+LLD+++ A + DF ++R  Q V     +   
Sbjct: 766 CSDVAEGIAYLHHYSPVKVVHCDLKPSNILLDDEMTALVTDFGISRLVQGVEETVSTDDS 825

Query: 195 ----SSNGVR-RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNL 249
               S++G+   ++GY A +Y +G   ST+GD Y++G+LLLE+V+ R+P D +     +L
Sbjct: 826 VSFGSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVSGRRPTDVLVNEGSSL 885

Query: 250 HNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMG 309
           H F +  +P+ +  I+   L              L +       E ++ M+ +G  C+  
Sbjct: 886 HEFMKSHYPDSLEGIIEQALSRWKPQGKPEKCEKLWR-------EVILEMIELGLVCTQY 938

Query: 310 SSQDRMNVPNAVHDL 324
           +   R ++ +  H++
Sbjct: 939 NPSTRPDMLDVAHEM 953

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 136/309 (44%), Gaps = 54/309 (17%)

Query: 9    LEYRLESHRFLHDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLL 68
            LE   E H    D + N +N   KL   +          ++PLR        K  +  LL
Sbjct: 828  LEMYAEGHGNSGDRTANNTNW--KLTGVKEALSINLAAFEKPLR--------KLTFADLL 877

Query: 69   KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH 128
            +AT+GF   +LIG G F  VY+ +     AV   K++ +  QG  + FMAE + +  I H
Sbjct: 878  QATNGFHNDSLIGSGGFGDVYKAILKDGSAVAIKKLIHVSGQG-DREFMAEMETIGKIKH 936

Query: 129  RNLVRFIS-----------------------------------------IAIDVASALDY 147
            RNLV  +                                          IAI  A  L +
Sbjct: 937  RNLVPLLGYCKVGDERLLVYEFMKYGSLEDVLHDPKKAGVKLNWSTRRKIAIGSARGLAF 996

Query: 148  LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
            LHH+C   I+H D K SNVLLD +L A + DF +AR    +   T  S + +  T GY  
Sbjct: 997  LHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMD--THLSVSTLAGTPGYVP 1054

Query: 208  LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL 267
             +Y      ST GD Y+YG++LLE++T ++P D    GD NL  + +     R+ D+ + 
Sbjct: 1055 PEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSPDFGDNNLVGWVKQHAKLRISDVFDP 1114

Query: 268  VLLNDNKVL 276
             L+ ++  L
Sbjct: 1115 ELMKEDPAL 1123

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FFW5|PERK8_ARATH Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 106/231 (45%), Gaps = 42/231 (18%)

Query: 64  YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
           Y+ L + T GF   NL+G G F  VY+GV    R V A+K L I      + F AE + +
Sbjct: 329 YDELSQVTSGFSEKNLLGEGGFGCVYKGVLSDGREV-AVKQLKIGGSQGEREFKAEVEII 387

Query: 124 KNICHRNLVRFIS---------------------------------------IAIDVASA 144
             + HR+LV  +                                        +A   A  
Sbjct: 388 SRVHHRHLVTLVGYCISEQHRLLVYDYVPNNTLHYHLHAPGRPVMTWETRVRVAAGAARG 447

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
           + YLH  C   I+H D K SN+LLDN   A + DF LA+  QE+   T  S+  V  T G
Sbjct: 448 IAYLHEDCHPRIIHRDIKSSNILLDNSFEALVADFGLAKIAQELDLNTHVSTR-VMGTFG 506

Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFE-GDLNLHNFAR 254
           Y A +Y    ++S   D Y+YG++LLE++T RKP+D     GD +L  +AR
Sbjct: 507 YMAPEYATSGKLSEKADVYSYGVILLELITGRKPVDTSQPLGDESLVEWAR 557

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 60/265 (22%)

Query: 53   LTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQ 110
            L L+   PKE    L +ATD F   N+IG  S   VY+G  + +  V+A+KVL+++    
Sbjct: 853  LKLKRFEPKE----LEQATDSFNSANIIGSSSLSTVYKGQLE-DGTVIAVKVLNLKEFSA 907

Query: 111  GASKSFMAECKALKNICHRNLVRFISIA-------------------------------- 138
             + K F  E K L  + HRNLV+ +  A                                
Sbjct: 908  ESDKWFYTEAKTLSQLKHRNLVKILGFAWESGKTKALVLPFMENGNLEDTIHGSAAPIGS 967

Query: 139  --------IDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR---FRQE 187
                    + +AS +DYLH      I+HCD KP+N+LLD+D  AH+ DF  AR   FR++
Sbjct: 968  LLEKIDLCVHIASGIDYLHSGYGFPIVHCDLKPANILLDSDRVAHVSDFGTARILGFRED 1027

Query: 188  VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG-- 245
             S  T +S++    TIGY A ++    +V+T  D +++GI+++E++T+++P     E   
Sbjct: 1028 GS--TTASTSAFEGTIGYLAPEFAYMRKVTTKADVFSFGIIMMELMTKQRPTSLNDEDSQ 1085

Query: 246  DLNLHNFARMAFPN------RVMDI 264
            D+ L      +  N      RV+D+
Sbjct: 1086 DMTLRQLVEKSIGNGRKGMVRVLDM 1110

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9S7I6|RPK2_ARATH LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1

 Score =  114 bits (286), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 109/230 (47%), Gaps = 41/230 (17%)

Query: 64   YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
            ++++++AT  F   NLIG G F A Y+     +  VVAIK LSI      + F AE K L
Sbjct: 864  FDNVVRATGNFNASNLIGNGGFGATYKAEISQD-VVVAIKRLSIGRFQGVQQFHAEIKTL 922

Query: 124  KNICHRNLVRFIS-------------------------------------IAIDVASALD 146
              + H NLV  I                                      IA+D+A AL 
Sbjct: 923  GRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFIQERSTRDWRVLHKIALDIARALA 982

Query: 147  YLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
            YLH  C   +LH D KPSN+LLD+D  A++ DF LAR    +      ++ GV  T GY 
Sbjct: 983  YLHDQCVPRVLHRDVKPSNILLDDDCNAYLSDFGLARL---LGTSETHATTGVAGTFGYV 1039

Query: 207  ALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA 256
            A +Y +   VS   D Y+YG++LLE+++ +K +D  F    N  N  + A
Sbjct: 1040 APEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFVSYGNGFNIVQWA 1089

Key regulator of anther development (e.g. lignification pattern), including tapetum degradation during pollen maturation (e.g. germination capacity). Together with RPK1, required for pattern formation along the radial axis (e.g. the apical embryonic domain cell types that generate cotyledon primordia), and the apical-basal axis (e.g. differentiation of the basal pole during early embryogenesis).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SX31|PERK9_ARATH Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 117/255 (45%), Gaps = 44/255 (17%)

Query: 39  GFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRA 98
           G  KR G S Q     L N+     YE L+KAT+GF   NL+G G F  VY+G+    R 
Sbjct: 343 GASKRSG-SYQSQSGGLGNSKALFSYEELVKATNGFSQENLLGEGGFGCVYKGILPDGR- 400

Query: 99  VVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS---------------------- 136
           VVA+K L I      + F AE + L  I HR+LV  +                       
Sbjct: 401 VVAVKQLKIGGGQGDREFKAEVETLSRIHHRHLVSIVGHCISGDRRLLIYDYVSNNDLYF 460

Query: 137 ----------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE 180
                           IA   A  L YLH  C   I+H D K SN+LL+++  A + DF 
Sbjct: 461 HLHGEKSVLDWATRVKIAAGAARGLAYLHEDCHPRIIHRDIKSSNILLEDNFDARVSDFG 520

Query: 181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID 240
           LAR   + +    +   G   T GY A +Y    +++   D +++G++LLE++T RKP+D
Sbjct: 521 LARLALDCNTHITTRVIG---TFGYMAPEYASSGKLTEKSDVFSFGVVLLELITGRKPVD 577

Query: 241 FMFE-GDLNLHNFAR 254
                GD +L  +AR
Sbjct: 578 TSQPLGDESLVEWAR 592

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFH9|LRK81_ARATH L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana GN=LECRK81 PE=1 SV=1

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 127/287 (44%), Gaps = 52/287 (18%)

Query: 60  PKEY-YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMA 118
           PKE+ Y+ L   T  F    +IG G+F  VY+G+      +VA+K  S   Q     F++
Sbjct: 361 PKEFSYKELKAGTKNFNESRIIGHGAFGVVYRGILPETGDIVAVKRCSHSSQDKKNEFLS 420

Query: 119 ECKALKNICHRNLVRFIS--------------------------------------IAID 140
           E   + ++ HRNLVR                                         I + 
Sbjct: 421 ELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFESRFTLPWDHRKKILLG 480

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           VASAL YLH  C+  ++H D K SN++LD    A +GDF LAR  +   +P  + + G  
Sbjct: 481 VASALAYLHRECENQVIHRDVKSSNIMLDESFNAKLGDFGLARQIEHDKSPEATVAAG-- 538

Query: 201 RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR 260
            T+GY A +Y L    S   D ++YG ++LE+V+ R+PI    E DLN+        PN 
Sbjct: 539 -TMGYLAPEYLLTGRASEKTDVFSYGAVVLEVVSGRRPI----EKDLNVQRHNVGVNPNL 593

Query: 261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACS 307
           V  +    L  + KV A  +S +  K         L+    +G ACS
Sbjct: 594 VEWVWG--LYKEGKVSAAADSRLEGKFDEGEMWRVLV----VGLACS 634

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
255576770	851	serine-threonine protein kinase, plant-t	0.735	0.307	0.462	1e-71
359482058	1040	PREDICTED: probable LRR receptor-like se	0.758	0.259	0.434	4e-69
147853780	1904	hypothetical protein VITISV_030954 [Viti	0.806	0.150	0.419	2e-68
224127492	1022	predicted protein [Populus trichocarpa]	0.806	0.280	0.402	1e-66
359486510	965	PREDICTED: probable LRR receptor-like se	0.752	0.277	0.438	4e-66
224115346	1017	predicted protein [Populus trichocarpa]	0.811	0.284	0.415	4e-66
224097752	1025	predicted protein [Populus trichocarpa]	0.811	0.281	0.425	9e-66
224097750	1023	predicted protein [Populus trichocarpa]	0.811	0.282	0.417	2e-64
224113117	1006	predicted protein [Populus trichocarpa]	0.755	0.267	0.408	4e-64
224141953	1026	predicted protein [Populus trichocarpa]	0.814	0.282	0.409	2e-63

>gi|255576770|ref|XP_002529272.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531261|gb|EEF33104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/316 (46%), Positives = 197/316 (62%), Gaps = 54/316 (17%)

Query: 64  YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
           Y+S+LKAT+GF   +LIG GSF +VY+ + D +   +AIKVL++Q +GASKSFMAEC+AL
Sbjct: 527 YKSILKATNGFSAESLIGAGSFGSVYKVILDEDGPALAIKVLNLQHRGASKSFMAECEAL 586

Query: 124 KNICHRNLVRFIS----------------------------------------------- 136
           K+I HRNLV+ I+                                               
Sbjct: 587 KSIRHRNLVKIITSCTSIDFQGNDFKALVYEYMPNGNLENWLHLGSGIGVAPFETNSLSL 646

Query: 137 -----IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP 191
                IAID+ +ALDYLHH C+  I+HCD KPSNVLLD D+ AHIGDF LA+F  +++NP
Sbjct: 647 LQRIDIAIDIGNALDYLHHQCERPIIHCDLKPSNVLLDIDMVAHIGDFGLAKFLPQLANP 706

Query: 192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN 251
            QSSS GVR TIGY   +Y LGSEVST+GD Y+YGILLLEM+T +KP D  F G+ NLH+
Sbjct: 707 AQSSSMGVRGTIGYAPPEYGLGSEVSTSGDVYSYGILLLEMMTGKKPTDDNFTGNHNLHS 766

Query: 252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSS 311
             RMA P+ V +IV+ +LL  ++     N   +     +S+++CLI M+++G ACSM S 
Sbjct: 767 ICRMALPDEVSEIVDPILLQGDE--TNNNQGSMEPKAADSKVKCLISMIKVGIACSMESP 824

Query: 312 QDRMNVPNAVHDLQSV 327
           QDRM++ NA+ +L  +
Sbjct: 825 QDRMDISNALTNLHYI 840

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/334 (43%), Positives = 199/334 (59%), Gaps = 64/334 (19%)

Query: 64   YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
            Y+ L KAT GF   NLIG G F +VY+G+   +  VVA+KV+ +  +GA KSF AEC+AL
Sbjct: 703  YDGLFKATGGFSSANLIGTGGFGSVYKGILGQDETVVAVKVIQLHQRGAVKSFKAECEAL 762

Query: 124  KNICHRNLVRFIS----------------------------------------------- 136
            +NI HRNLV+ ++                                               
Sbjct: 763  RNIRHRNLVKVLTTCSSVDYQGNDFKALVYEFMPNGSLENWLHPVPTPDEINDVLRILSL 822

Query: 137  -----IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV--- 188
                 IAIDVASALDYLHHHC + I+HCD KPSN+LLDND+ AH+GDF LARF  E    
Sbjct: 823  PQRLNIAIDVASALDYLHHHCHKPIVHCDLKPSNILLDNDMTAHVGDFGLARFIPEAAGR 882

Query: 189  SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN 248
            S+P+QSSS G++ TIGY A +Y +G++VS  GD Y+YGILLLEM T ++P + MF   LN
Sbjct: 883  SHPSQSSSIGLKGTIGYAAPEYGMGTKVSALGDTYSYGILLLEMFTGKRPTESMFSDQLN 942

Query: 249  LHNFARMAFPNRVMDIVNLVLLN----DNKVLAGTNSNM--LRKTKMNSRLECLIFMVRI 302
            LHNF +MA P R+ DI++   L+    + +  A  +SN+  +++ KM+   ECLI ++RI
Sbjct: 943  LHNFVKMALPERIADIIDPFFLSSEAKEEETTAADSSNLAHMKREKMH---ECLISILRI 999

Query: 303  GAACSMGSSQDRMNVPNAVHDLQSVNNILLPETV 336
            G +CS+ S ++RM +  A+ +LQ +  ILL   V
Sbjct: 1000 GVSCSLESPRERMAITEAIKELQLIRKILLGNGV 1033

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/353 (41%), Positives = 207/353 (58%), Gaps = 66/353 (18%)

Query: 41   KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVV 100
            + +R PS+     + ++ I    Y+ L KAT GF   NLIG G F +VY+G    +  VV
Sbjct: 713  RVKREPSQT--SASSKDLILNVSYDGLFKATGGFSSANLIGTGGFGSVYKGXLGQDETVV 770

Query: 101  AIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS------------------------ 136
            A+KV+ +  +GA KSF AEC+AL+NI HRNLV+ ++                        
Sbjct: 771  AVKVIQLHQRGAVKSFKAECEALRNIRHRNLVKVLTTCSSVDYQGNDFKALVYEFMPNGS 830

Query: 137  ----------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLL 168
                                        IAIDVASALDYLHHHC + I+HCD KPSN+LL
Sbjct: 831  LENWLHPVPTPDEINDVLRILSLPQRLNIAIDVASALDYLHHHCHKPIVHCDLKPSNILL 890

Query: 169  DNDLFAHIGDFELARFRQEV---SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNY 225
            DND+ AH+GDF LARF  E    S+P+QSSS G++ TIGY A +Y +G++VS  GD Y+Y
Sbjct: 891  DNDMTAHVGDFGLARFIPEAAGRSHPSQSSSIGLKGTIGYAAPEYGMGTKVSALGDTYSY 950

Query: 226  GILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN----DNKVLAGTNS 281
            GILLLEM T ++P + MF   LNLHNF +MA P R+ DI++   L+    + +  A  +S
Sbjct: 951  GILLLEMFTGKRPTESMFSDQLNLHNFVKMALPERIADIIDPFFLSSEAKEEETTAADSS 1010

Query: 282  NM--LRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL 332
            N+  +++ KM+   ECLI ++RIG +CS+ S ++RM +  A+ +LQ +  ILL
Sbjct: 1011 NLAHMKREKMH---ECLISILRIGVSCSLESPRERMAITEAIKELQLIRKILL 1060

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127492|ref|XP_002329291.1| predicted protein [Populus trichocarpa] gi|222870745|gb|EEF07876.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/343 (40%), Positives = 208/343 (60%), Gaps = 56/343 (16%)

Query: 41   KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVV 100
            KK +  + QP   +L  + P+  YE LL ATDGF   NLIG GSF +V++G+   ++ VV
Sbjct: 679  KKDKPAASQP---SLETSFPRVAYEDLLGATDGFSSANLIGEGSFGSVFKGILGPDKIVV 735

Query: 101  AIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS------------------------ 136
            A+KVL++  +GASKSFMAEC+ALK+I HRNLV+ ++                        
Sbjct: 736  AVKVLNLLRKGASKSFMAECEALKSIRHRNLVKLLTTCSSIDFQGNDFKALVYEFMVNGN 795

Query: 137  ---------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLD 169
                                       IAI +ASAL+YLHH CQ  I+HCD KPSN+LLD
Sbjct: 796  LEEWLHPVQTSDEANGPKALDLMHRLNIAIHMASALNYLHHDCQMPIIHCDLKPSNILLD 855

Query: 170  NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILL 229
             ++ AH+GDF LARF  E SN  Q+SS G++ TIGY A +Y +G +VST GD Y+YGILL
Sbjct: 856  TNMTAHVGDFGLARFHSEASN--QTSSVGLKGTIGYAAPEYGIGGKVSTYGDVYSYGILL 913

Query: 230  LEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKM 289
            LEM T ++P+D MF+  LNLH++A+MA P+R++++V+ +L+ + + +  ++   +     
Sbjct: 914  LEMFTGKRPVDGMFKDGLNLHSYAKMALPDRIVEVVDPLLVREIRSVNSSDEMGMYHIGP 973

Query: 290  NSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL 332
            +    CL+ ++++G ACS+   ++RM++ + V +L  + + LL
Sbjct: 974  HEISACLMTIIKMGVACSVELPRERMDIGDVVTELNRIKDTLL 1016

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486510|ref|XP_002271317.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like, partial [Vitis vinifera]

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 142/324 (43%), Positives = 190/324 (58%), Gaps = 56/324 (17%)

Query: 64  YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
           Y+SLL+ATDGF   NLIGVGSF +VY+G+ D +   +A+KVL++  +GASKSF+AEC+AL
Sbjct: 628 YQSLLRATDGFSSSNLIGVGSFGSVYKGILDHDGTAIAVKVLNLLRKGASKSFIAECEAL 687

Query: 124 KNICHRNLVRFIS----------------------------------------------- 136
           +NI HRNLV+ ++                                               
Sbjct: 688 RNIRHRNLVKVLTACSGVDYQGNDFKAVVYEFMVNGSLEQWLHPTPTTAEASAPPRKLNF 747

Query: 137 -----IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN- 190
                IAIDVA ALDYLHH CQ  I+HCD KPSNVLLD ++  H+GDF +A+F  E +  
Sbjct: 748 LQRLNIAIDVACALDYLHHQCQTPIVHCDLKPSNVLLDTEMTGHVGDFGIAKFLPEAATR 807

Query: 191 --PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN 248
               QSSS G+R TIGY A +Y +GSEVST+GD Y++GILLLEM T ++P + MF+  LN
Sbjct: 808 VPEIQSSSIGIRGTIGYAAPEYGMGSEVSTSGDVYSFGILLLEMFTGKRPTEDMFKDSLN 867

Query: 249 LHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSM 308
           +HNF + A P RV +I + VLL +   +  T S   R    +   ECLI +  IG ACS 
Sbjct: 868 IHNFVKTAVPERVAEIADPVLLQEGVEMDNTTSQR-RMASSHDAQECLISIFGIGLACSA 926

Query: 309 GSSQDRMNVPNAVHDLQSVNNILL 332
              ++R N+ +A  +L SV +I L
Sbjct: 927 ELPRERKNITDAAAELNSVRDIFL 950

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115346|ref|XP_002317009.1| predicted protein [Populus trichocarpa] gi|222860074|gb|EEE97621.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 143/344 (41%), Positives = 207/344 (60%), Gaps = 55/344 (15%)

Query: 40   FKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAV 99
            +  RR   +Q   L+L+  +PK  YE LLKAT+GF   NLIG G F +VY+G+ D +  V
Sbjct: 676  YLSRRKRKEQSSELSLKEPLPKVSYEMLLKATNGFSSDNLIGEGGFGSVYRGILDQDDTV 735

Query: 100  VAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS----------------------- 136
            VAIKVL++Q +GASKSF+AEC+AL+N+ HRNL++ I+                       
Sbjct: 736  VAIKVLNLQTRGASKSFVAECEALRNVRHRNLLKIITSCSSVDFQGNEFKALVYEFMPNG 795

Query: 137  -----------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF 173
                                   I IDVASAL+YLHH    L++HCD KPSN+LLD ++ 
Sbjct: 796  SLEILEKWLYSHNYFLDLLQRLNIMIDVASALEYLHHGNATLVVHCDLKPSNILLDENMV 855

Query: 174  AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMV 233
            AH+ DF +A+   E  + TQ+ +     T+GY A +Y LGS+VS  GD Y+YGI LLEM+
Sbjct: 856  AHVSDFGIAKLLGEGHSITQTMT---LATVGYMAPEYGLGSQVSIYGDIYSYGIPLLEMI 912

Query: 234  TRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAG--TNSNMLRKT---- 287
            TR++P D MFEG LNLH FARMA P +V++IV+  LL+   V AG  +N+++   T    
Sbjct: 913  TRKRPTDNMFEGTLNLHGFARMALPEQVLNIVDPSLLSSGNVKAGRMSNTSLENPTSSSG 972

Query: 288  KMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL 331
            ++ + +EC+  +++IG +CS    +DR+ + +A+ +L S+  IL
Sbjct: 973  EIGTLVECVTSLIQIGLSCSRELPRDRLEINHAITELCSIRKIL 1016

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097752|ref|XP_002311067.1| predicted protein [Populus trichocarpa] gi|222850887|gb|EEE88434.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 149/350 (42%), Positives = 203/350 (58%), Gaps = 61/350 (17%)

Query: 41   KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVV 100
            KK R  S  P   T +    +  YE LL+AT+GF   NLIG GSF +VY+G+   + A V
Sbjct: 678  KKSRPASGSPWESTFQ----RVAYEDLLQATNGFSPANLIGAGSFGSVYKGILRSDGAAV 733

Query: 101  AIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS------------------------ 136
            A+KV ++  +GASKSFMAEC AL NI HRNLV+ ++                        
Sbjct: 734  AVKVFNLLREGASKSFMAECAALINIRHRNLVKVLTACSGIDFQGNDFKALVYEFMVNGS 793

Query: 137  ---------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLD 169
                                       IAIDVASALDYLH+HCQ  I+HCD KPSNVLLD
Sbjct: 794  LEEWLHPAQISDEAHRRRDLSLLQRLNIAIDVASALDYLHNHCQIAIVHCDLKPSNVLLD 853

Query: 170  NDLFAHIGDFELARFRQEVSNPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYG 226
             DL AH+GDF LAR   + S+     Q+SS G++ TIGY A +Y LGSEVS  GD Y+YG
Sbjct: 854  GDLTAHVGDFGLARLLPQASHQLCLDQTSSIGLKGTIGYAAPEYGLGSEVSPYGDVYSYG 913

Query: 227  ILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRK 286
            ILLLE+ T R+P D +F+  LNLHNFA+ A P  V ++++ VL+ + +  +G  S   R 
Sbjct: 914  ILLLEVFTGRRPTDGLFKDGLNLHNFAKTALPISVAEVLDPVLVTEAEETSGDASR--RM 971

Query: 287  TKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL-PET 335
            + + + +ECL  +V++G ACS    ++RM + +   +L+ + +ILL P+T
Sbjct: 972  SHIGNHMECLAAIVKVGVACSAEFPRERMEISSVAVELRRIRHILLGPQT 1021

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097750|ref|XP_002311066.1| predicted protein [Populus trichocarpa] gi|222850886|gb|EEE88433.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/350 (41%), Positives = 201/350 (57%), Gaps = 61/350 (17%)

Query: 41   KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVV 100
            KK R  S  P   T +    +  YE LL+AT GF   NLIG GSF +VY+G+   + A V
Sbjct: 676  KKSRPASGSPWESTFQ----RVAYEDLLQATKGFSPANLIGAGSFGSVYKGILRSDGAAV 731

Query: 101  AIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS------------------------ 136
            A+KV ++  +GASKSFMAEC AL NI HRNLV+ ++                        
Sbjct: 732  AVKVFNLLREGASKSFMAECAALINIRHRNLVKVLTACSGIDFQGNDFKALVYEFMVNGS 791

Query: 137  ---------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLD 169
                                       IAIDVASALDYLH+HCQ  + HCD KPSNVLLD
Sbjct: 792  LEEWLHPVQISDEAHVRRDLSLLQRLNIAIDVASALDYLHNHCQIAVAHCDLKPSNVLLD 851

Query: 170  NDLFAHIGDFELARFRQEVSNPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYG 226
             D+ AH+GDF LAR   + S+     Q+SS G++ TIGY A +Y LGSEVS  GD Y+YG
Sbjct: 852  GDMTAHVGDFGLARLLPQASHQLCLDQTSSIGLKGTIGYAAPEYGLGSEVSPYGDVYSYG 911

Query: 227  ILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRK 286
            ILLLE+ T R+P + +F+  LNLHNFA+ A P  V ++++ VL+ + +  +G  S   R 
Sbjct: 912  ILLLEVFTGRRPTNGLFKDGLNLHNFAKTALPISVAEVLDPVLVTEAEETSGDASR--RM 969

Query: 287  TKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL-PET 335
            + + + +ECL  +V++G ACS    ++RM + +   +L+ + +ILL P+T
Sbjct: 970  SHIGNHMECLAAIVKVGVACSAEFPRERMEISSVAVELRRIRHILLGPQT 1019

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113117|ref|XP_002316396.1| predicted protein [Populus trichocarpa] gi|222865436|gb|EEF02567.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 132/323 (40%), Positives = 192/323 (59%), Gaps = 54/323 (16%)

Query: 64   YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
            YE L +AT GF   N IG GSF +VY+ +   +  +VA+KV ++  +GASKS+MAEC AL
Sbjct: 678  YEELYQATGGFSSSNFIGGGSFGSVYKAILAPDGMIVAVKVFNLLRKGASKSYMAECAAL 737

Query: 124  KNICHRNLVRFIS----------------------------------------------- 136
             NI HRNLV+ ++                                               
Sbjct: 738  INIRHRNLVKILTACSSLDFRGNDFKALVYEFMVNGSLEEWLHPVHTSDEEREQGNLNLI 797

Query: 137  ----IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS--- 189
                +AIDVASALDYLH+HCQ  ++HCD KPSNVLLD D+ AH+GDF LARFR E S   
Sbjct: 798  QRLNVAIDVASALDYLHYHCQMAVVHCDLKPSNVLLDGDMTAHVGDFGLARFRPEASVQL 857

Query: 190  NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNL 249
            +  Q+SS G++ T+GY A +Y +G+EVST GD Y+YGILLLE++T + P D  F+  LNL
Sbjct: 858  SSNQNSSIGLKGTVGYAAPEYGIGNEVSTYGDVYSYGILLLEILTGKTPTDGSFKEGLNL 917

Query: 250  HNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMG 309
            H + +MA P+RV+++V+ +LL + +  +   S+ +++   +  LECL+ ++ +G +CS+ 
Sbjct: 918  HKYVKMALPDRVVEVVDPILLREIEQTSANASDGMKRIGNDKVLECLVSIMEVGVSCSVD 977

Query: 310  SSQDRMNVPNAVHDLQSVNNILL 332
              ++R N+ N V +L  +  ILL
Sbjct: 978  LPRERTNISNVVAELHRIRGILL 1000

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141953|ref|XP_002324325.1| predicted protein [Populus trichocarpa] gi|222865759|gb|EEF02890.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/361 (40%), Positives = 198/361 (54%), Gaps = 71/361 (19%)

Query: 41   KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVV 100
            KKR+  S   L   L+ + P+  YE L KATDGF   NLIGVGSF +VY+G  D +  +V
Sbjct: 675  KKRKEHSSDTL---LKESFPQISYERLFKATDGFSTTNLIGVGSFSSVYKGRIDEDGTLV 731

Query: 101  AIKVLSIQCQGASKSF------------------MAECKAL------------------- 123
            AIKVL++Q +GASKSF                  +  C ++                   
Sbjct: 732  AIKVLNLQRRGASKSFKDECEALRNIRHRNLVKIITSCSSIDFQGNNFKALVYEYMPKGS 791

Query: 124  -----------------KNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNV 166
                               +   NL+  I+IAIDVA+ALDYLHHHC   I+HCD KPSN+
Sbjct: 792  LEKWLHPTQETHDDQQINQVQRPNLLERINIAIDVAAALDYLHHHCHSPIIHCDVKPSNI 851

Query: 167  LLDNDLFAHIGDFELARFRQEVSNPT-QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNY 225
            LLD D+  H+GDF LAR  QE S P+ +SSS G++ T GY A +Y  G EVS +GD Y+Y
Sbjct: 852  LLDKDMIGHLGDFGLARIFQEFSEPSLESSSAGIKGTTGYAAPEYGQGREVSIDGDVYSY 911

Query: 226  GILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLR 285
            GILLLEM+T ++PID  FE  LNLH FA+MA P+ V++I + VLL++  +          
Sbjct: 912  GILLLEMMTGKRPIDDTFEKGLNLHMFAKMALPDHVIEITDPVLLSERHL---------- 961

Query: 286  KTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRA 345
                 S  ECL  +V+IG ACSM S +DRM++   V +L  V +    +   +   NN+ 
Sbjct: 962  -ENAASMEECLTSLVKIGVACSMDSPRDRMDMSRVVRELLMVRDTF--QGTARRPENNKY 1018

Query: 346  P 346
            P
Sbjct: 1019 P 1019

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.373	0.131	0.528	1.6e-49
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.558	0.194	0.386	1.9e-49
TAIR|locus:2175703	502	AT5G39390 [Arabidopsis thalian	0.337	0.239	0.544	2.6e-34
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.519	0.183	0.425	6.2e-34
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.547	0.198	0.280	8.9e-34
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.337	0.116	0.528	4.7e-32
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.516	0.182	0.422	8.2e-32
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.502	0.174	0.407	9.1e-30
TAIR|locus:2026408	540	RPK1 "receptor-like protein ki	0.325	0.214	0.401	4.8e-23
TAIR|locus:2183835	433	AT5G11020 [Arabidopsis thalian	0.300	0.247	0.375	8e-22

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.6e-49, Sum P(3) = 1.6e-49
 Identities = 73/138 (52%), Positives = 97/138 (70%)

Query:   131 LVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR----FRQ 186
             L+  ++I IDVAS LDYLH HC E I HCD KPSNVLL++DL AH+ DF LAR    F +
Sbjct:   811 LLERLNIVIDVASVLDYLHVHCHEPIAHCDLKPSNVLLEDDLTAHVSDFGLARLLLKFDK 870

Query:   187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
             E S   Q SS GVR TIGY A +Y +G + S +GD Y++G+LLLEM T ++P D +F G+
Sbjct:   871 E-SFLNQLSSAGVRGTIGYAAPEYGMGGQPSIHGDVYSFGVLLLEMFTGKRPTDELFGGN 929

Query:   247 LNLHNFARMAFPNRVMDI 264
             L LH++ ++A P +V +I
Sbjct:   930 LTLHSYTKLALPEKVFEI 947

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 364 (133.2 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
 Identities = 80/207 (38%), Positives = 118/207 (57%)

Query:   128 HRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE 187
             H NL R ++I +DVA ALDYLH H  E ++HCD K SNVLLD+D+ AH+GDF LAR   +
Sbjct:   810 HLNLHRRVTILLDVACALDYLHRHGPEPVVHCDIKSSNVLLDSDMVAHVGDFGLARILVD 869

Query:   188 VSNPTQ--SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG 245
              ++  Q  +SS G   TIGY A +Y +G   ST+GD Y+YGIL+LE+VT ++P D  F  
Sbjct:   870 GTSLIQQSTSSMGFIGTIGYAAPEYGVGLIASTHGDIYSYGILVLEIVTGKRPTDSTFRP 929

Query:   246 DLNLHNFARMAFPNRVMDIXXXXXXXXXXXXAG-TNSNMLRKTKMNSRLECLIFMVRIGA 304
             DL L  +  +    RV D+               TN++  R+       EC+++++R+G 
Sbjct:   930 DLGLRQYVELGLHGRVTDVVDTKLILDSENWLNSTNNSPCRRIT-----ECIVWLLRLGL 984

Query:   305 ACSMGSSQDRMNVPNAVHDLQSVNNIL 331
             +CS      R    + + +L ++   L
Sbjct:   985 SCSQELPSSRTPTGDIIDELNAIKQNL 1011

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175703 AT5G39390 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.6e-34, Sum P(2) = 2.6e-34
 Identities = 67/123 (54%), Positives = 84/123 (68%)

Query:   135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT-- 192
             ++IAIDVASAL+YLH +C + + HCD KPSNVLLD+DL AH+ DF LAR        T  
Sbjct:   321 VNIAIDVASALEYLHVYCHDPVAHCDIKPSNVLLDDDLTAHVSDFGLARLLYNFDEKTFL 380

Query:   193 -QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN 251
              Q SS GVR TIGY A +Y +GS+ S  GD Y++G+LLLEM T +KP D  F G  NLH 
Sbjct:   381 NQFSSAGVRGTIGYAAPEYGMGSKPSIQGDVYSFGVLLLEMFTGKKPTDNSFGGGYNLHG 440

Query:   252 FAR 254
             + +
Sbjct:   441 YTK 443

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 6.2e-34, Sum P(2) = 6.2e-34
 Identities = 85/200 (42%), Positives = 113/200 (56%)

Query:   131 LVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR---QE 187
             L+  ++IAIDVAS LDYLH HC E I HCD KPSNVLLD+DL AH+ DF LAR      E
Sbjct:   810 LLERLNIAIDVASVLDYLHVHCHEPIAHCDLKPSNVLLDDDLTAHVSDFGLARLLLKFDE 869

Query:   188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL 247
              S   Q SS GVR TIGY A +Y +G + S NGD Y++GILLLEM T ++P + +F G+ 
Sbjct:   870 ESFFNQLSSAGVRGTIGYAAPEYGVGGQPSINGDVYSFGILLLEMFTGKRPTNELFGGNF 929

Query:   248 NLHNFARMAFPNRVMDIXXXXXXXXXXXXAGTNSNMLRKTKMNSRLECLIFMVRIGAACS 307
              L+++ + A P R++DI             G              +ECL  +  +G  C 
Sbjct:   930 TLNSYTKSALPERILDIVDESILHI-----GLRVGF-------PVVECLTMVFEVGLRCC 977

Query:   308 MGSSQDRMNVPNAVHDLQSV 327
               S  +R+     V +L S+
Sbjct:   978 EESPMNRLATSIVVKELISI 997

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 8.9e-34, Sum P(2) = 8.9e-34
 Identities = 59/210 (28%), Positives = 109/210 (51%)

Query:   130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS 189
             +L++ ++I  DVA  + YLHH+    ++HCD KPSN+LLD+++ A + DF ++R  Q V 
Sbjct:   758 DLIQLVNICSDVAEGIAYLHHYSPVKVVHCDLKPSNILLDDEMTALVTDFGISRLVQGVE 817

Query:   190 NPTQS-------SSNGVR-RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF 241
                 +       S++G+   ++GY A +Y +G   ST+GD Y++G+LLLE+V+ R+P D 
Sbjct:   818 ETVSTDDSVSFGSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVSGRRPTDV 877

Query:   242 MFEGDLNLHNFARMAFPNRVMDIXXXXXXXXXXXXAGTNSNMLRKTKMNSRLECLIFMVR 301
             +     +LH F +  +P+ +  I                   L +       E ++ M+ 
Sbjct:   878 LVNEGSSLHEFMKSHYPDSLEGIIEQALSRWKPQGKPEKCEKLWR-------EVILEMIE 930

Query:   302 IGAACSMGSSQDRMNVPNAVHDLQSVNNIL 331
             +G  C+  +   R ++ +  H++  +   L
Sbjct:   931 LGLVCTQYNPSTRPDMLDVAHEMGRLKEYL 960

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 4.7e-32, Sum P(2) = 4.7e-32
 Identities = 65/123 (52%), Positives = 86/123 (69%)

Query:   135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT-- 192
             ++IAIDVASAL+YLH HC + + HCD KPSN+LLD+DL AH+ DF LA+   +    +  
Sbjct:   824 LNIAIDVASALEYLHVHCHDPVAHCDIKPSNILLDDDLTAHVSDFGLAQLLYKYDRESFL 883

Query:   193 -QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN 251
              Q SS GVR TIGY A +Y +G + S  GD Y++GILLLEM + +KP D  F GD NLH+
Sbjct:   884 NQFSSAGVRGTIGYAAPEYGMGGQPSIQGDVYSFGILLLEMFSGKKPTDESFAGDYNLHS 943

Query:   252 FAR 254
             + +
Sbjct:   944 YTK 946

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 8.2e-32, P = 8.2e-32
 Identities = 85/201 (42%), Positives = 117/201 (58%)

Query:   131 LVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR----FRQ 186
             L+  ++IAIDVAS LDYLH HC E I HCD KPSN+LLD+DL AH+ DF LAR    F Q
Sbjct:   809 LLERLNIAIDVASVLDYLHVHCHEPIAHCDLKPSNILLDDDLTAHVSDFGLARLLLKFDQ 868

Query:   187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
             E S   Q SS GVR TIGY A +Y +G + S +GD Y++G+L+LEM T ++P + +F G+
Sbjct:   869 E-SFFNQLSSAGVRGTIGYAAPEYGMGGQPSIHGDVYSFGVLVLEMFTGKRPTNELFGGN 927

Query:   247 LNLHNFARMAFPNRVMDIXXXXXXXXXXXXAGTNSNMLRKTKMNSRLECLIFMVRIGAAC 306
               L+++ + A P RV+DI            +G              LECL  ++ +G  C
Sbjct:   928 FTLNSYTKAALPERVLDIADKSILH-----SGLRVGF-------PVLECLKGILDVGLRC 975

Query:   307 SMGSSQDRMNVPNAVHDLQSV 327
                S  +R+    A  +L S+
Sbjct:   976 CEESPLNRLATSEAAKELISI 996

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 9.1e-30, P = 9.1e-30
 Identities = 81/199 (40%), Positives = 114/199 (57%)

Query:   135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT-- 192
             ++IAIDVASAL YLH +C   I HCD KPSN+LLD DL AH+ DF LA+   +    T  
Sbjct:   831 LNIAIDVASALVYLHTYCHNPIAHCDIKPSNILLDKDLTAHVSDFGLAQLLLKFDRDTFH 890

Query:   193 -QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN 251
              Q SS GVR TIGY A +Y +G   S  GD Y++GI+LLE+ T ++P + +F   L LH+
Sbjct:   891 IQFSSAGVRGTIGYAAPEYGMGGHPSIMGDVYSFGIVLLEIFTGKRPTNKLFVDGLTLHS 950

Query:   252 FARMAFPNR-VMDIXXXXXXXXXXXXAGTNSNMLRKTKMN--SRLECLIFMVRIGAACSM 308
             F + A   R  +DI              T+  +LR       + +ECL  + R+G +CS 
Sbjct:   951 FTKSALQKRQALDI--------------TDETILRGAYAQHFNMVECLTLVFRVGVSCSE 996

Query:   309 GSSQDRMNVPNAVHDLQSV 327
              S  +R+++  A+  L S+
Sbjct:   997 ESPVNRISMAEAISKLVSI 1015

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2026408 RPK1 "receptor-like protein kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
 Identities = 49/122 (40%), Positives = 72/122 (59%)

Query:   137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS 196
             IA+DVA AL YLH  C   +LH D KPSN+LLDN+  A++ DF L++    +       +
Sbjct:   362 IALDVARALSYLHEQCSPKVLHRDIKPSNILLDNNYNAYLSDFGLSKL---LGTSQSHVT 418

Query:   197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF---EGDLNLHNFA 253
              GV  T GY A +Y +   VS   D Y+YGI+LLE+++ ++ +D  F   E   N+ ++A
Sbjct:   419 TGVAGTFGYVAPEYAMTCRVSEKADVYSYGIVLLELISDKRALDPSFSSHENGFNIVSWA 478

Query:   254 RM 255
              M
Sbjct:   479 HM 480

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0009945 "radial axis specification" evidence=IMP

GO:0048508 "embryonic meristem development" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2183835 AT5G11020 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 42/112 (37%), Positives = 69/112 (61%)

Query:   135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
             + IA+DV   L+YLH HC   I+H D K SN+LLD++  A I DF LA     V  P ++
Sbjct:   241 MKIALDVTRGLEYLHEHCHPAIIHRDLKSSNILLDSNFNAKISDFGLA----VVDGP-KN 295

Query:   195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
              ++ +  T+GY A +Y L  +++   D Y +G++LLE++  +KP++ +  G+
Sbjct:   296 KNHKLSGTVGYVAPEYLLNGQLTEKSDVYAFGVVLLELLLGKKPVEKLAPGE 347

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-20
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-17
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	5e-17
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-16
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-13
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	3e-13
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-13
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	8e-12
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-11
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-11
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	5e-11
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-10
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-10
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-10
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	7e-10
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	9e-10
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	1e-09
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-09
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	3e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-09
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	4e-09
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	6e-09
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	6e-09
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	1e-08
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-08
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-08
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-08
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-08
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	5e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	5e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	5e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	8e-08
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	1e-07
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-07
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	1e-07
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-07
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-07
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-07
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	3e-07
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	3e-07
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	4e-07
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	5e-07
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	6e-07
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	9e-07
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	9e-07
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	1e-06
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-06
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	3e-06
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	3e-06
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	5e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	5e-06
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	7e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	8e-06
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	9e-06
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	1e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-05
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-05
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-05
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	2e-05
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-05
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	2e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-05
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-05
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	2e-05
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-05
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	3e-05
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-05
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	4e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	4e-05
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	4e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	4e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	5e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	5e-05
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	5e-05
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	6e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	7e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	8e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	9e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-04
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-04
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	2e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	3e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-04
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-04
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	3e-04
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	4e-04
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	4e-04
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	4e-04
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	5e-04
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	5e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	5e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	6e-04
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	6e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	6e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	7e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	7e-04
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	7e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	7e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.001
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.001
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	0.001
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.002
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	0.002
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	0.003
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.003
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.003
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	0.003
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	0.004
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.004
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	0.004
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	0.004
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.004
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.004
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	0.004
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 86.5 bits (215), Expect = 7e-20
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 48/194 (24%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF---- 134
           +G G F  VY          VAIK++  +      +  + E + LK + H N+V+     
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCD 160
                                             + I + +   L+YLH +    I+H D
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNG---IIHRD 117

Query: 161 PKPSNVLLDNDLF-AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD-YDLGSEVST 218
            KP N+LLD+D     + DF L++         +S    +  T  Y A +        S 
Sbjct: 118 LKPENILLDSDNGKVKLADFGLSKL----LTSDKSLLKTIVGTPAYMAPEVLLGKGYYSE 173

Query: 219 NGDAYNYGILLLEM 232
             D ++ G++L E+
Sbjct: 174 KSDIWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 56/216 (25%), Positives = 83/216 (38%), Gaps = 56/216 (25%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF 134
           ++  +G GSF  VY         +VAIKV+  +  +   +  + E K LK + H N+VR 
Sbjct: 3   ILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRL 62

Query: 135 I-------------------------------------SIAIDVASALDYLHHHCQELIL 157
                                                      + SAL+YLH      I+
Sbjct: 63  YDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKG---IV 119

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYDLGS 214
           H D KP N+LLD D    + DF LAR    +    + ++     T  Y A   L   LG 
Sbjct: 120 HRDLKPENILLDEDGHVKLADFGLARQ---LDPGEKLTTFVG--TPEYMAPEVL---LGK 171

Query: 215 EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLH 250
                 D ++ G++L E++T + P    F GD  L 
Sbjct: 172 GYGKAVDIWSLGVILYELLTGKPP----FPGDDQLL 203

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 79.6 bits (197), Expect = 5e-17
 Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 53/202 (26%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRNLVRFISI 137
           +G GSF  VY+        +VA+K+L  + + + K  +   E + L+ + H N+VR I  
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDA 66

Query: 138 AID-------------------------------------VASALDYLHHHCQELILHCD 160
             D                                     +   L+YLH +    I+H D
Sbjct: 67  FEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNG---IIHRD 123

Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA----LDYDLGSEV 216
            KP N+LLD +    I DF LA+        + SS      T  Y A    L    G+  
Sbjct: 124 LKPENILLDENGVVKIADFGLAKKL----LKSSSSLTTFVGTPWYMAPEVLLG---GNGY 176

Query: 217 STNGDAYNYGILLLEMVTRRKP 238
               D ++ G++L E++T + P
Sbjct: 177 GPKVDVWSLGVILYELLTGKPP 198

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 76.4 bits (189), Expect = 5e-16
 Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 46/202 (22%)

Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVRFI 135
            L+G GSF +VY  +      ++A+K + +        ++   E + L ++ H N+VR+ 
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 136 ---------------------SIA------------------IDVASALDYLHHHCQELI 156
                                S++                    +   L YLH +    I
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNG---I 122

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV 216
           +H D K +N+L+D+D    + DF  A+   ++     + S  VR T  + A +   G E 
Sbjct: 123 VHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGS--VRGTPYWMAPEVIRGEEY 180

Query: 217 STNGDAYNYGILLLEMVTRRKP 238
               D ++ G  ++EM T + P
Sbjct: 181 GRAADIWSLGCTVIEMATGKPP 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 55/206 (26%)

Query: 76  LINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRN 130
           L   +G G+F  VY+G         +  VA+K L         + F+ E + ++ + H N
Sbjct: 3   LGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 131 LVRFI--------------------------------------SIAIDVASALDYLHHHC 152
           +V+ +                                      S A+ +A  ++YL    
Sbjct: 63  VVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKN 122

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LD 209
               +H D    N L+  +L   I DF L+R   ++ +       G +  I + A   L 
Sbjct: 123 ---FIHRDLAARNCLVGENLVVKISDFGLSR---DLYDDDYYRKRGGKLPIRWMAPESLK 176

Query: 210 YDLGSEVSTNGDAYNYGILLLEMVTR 235
                + ++  D +++G+LL E+ T 
Sbjct: 177 E---GKFTSKSDVWSFGVLLWEIFTL 199

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 43/207 (20%), Positives = 75/207 (36%), Gaps = 56/207 (27%)

Query: 76  LINLIGVGSFDAVYQGV----FDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRN 130
           L   +G G+F  VY+G      +     VA+K L     +   + F+ E   +K + H N
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPN 62

Query: 131 LVRFI--------------------------------------SIAIDVASALDYLH-HH 151
           +VR +                                       +A+ +A  ++YL   +
Sbjct: 63  IVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKN 122

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---L 208
                +H D    N L+  +L   I DF L+R   E     +    G    I + A   L
Sbjct: 123 F----VHRDLAARNCLVTENLVVKISDFGLSRDIYEDDY-YRKRGGGKLP-IKWMAPESL 176

Query: 209 DYDLGSEVSTNGDAYNYGILLLEMVTR 235
                 + ++  D +++G+LL E+ T 
Sbjct: 177 KD---GKFTSKSDVWSFGVLLWEIFTL 200

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 42/207 (20%), Positives = 76/207 (36%), Gaps = 56/207 (27%)

Query: 76  LINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNICHRN 130
           L   +G G+F  VY+G      D     VA+K L         + F+ E + ++ + H N
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62

Query: 131 LVRFI---------------------------------------SIAIDVASALDYLHHH 151
           +V+ +                                       S A+ +A  ++YL   
Sbjct: 63  IVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK 122

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---L 208
                +H D    N L+  +L   I DF L+R   ++ +       G +  I + A   L
Sbjct: 123 N---FIHRDLAARNCLVGENLVVKISDFGLSR---DLYDDDYYKVKGGKLPIRWMAPESL 176

Query: 209 DYDLGSEVSTNGDAYNYGILLLEMVTR 235
                 + ++  D +++G+LL E+ T 
Sbjct: 177 KE---GKFTSKSDVWSFGVLLWEIFTL 200

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 64.4 bits (157), Expect = 8e-12
 Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 51/203 (25%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           F L   +G G F  V++G++  NR  VAIK+L        + F  E +ALK + H++L+ 
Sbjct: 8   FTLERKLGSGYFGEVWEGLW-KNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLIS 66

Query: 134 F---------------------------------------ISIAIDVASALDYLHHHCQE 154
                                                   I +A  VA  + YL    ++
Sbjct: 67  LFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---EQ 123

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY--TALDYDL 212
             +H D    N+L+  DL   + DF LAR  +E       SS+   + I Y  TA +   
Sbjct: 124 NSIHRDLAARNILVGEDLVCKVADFGLARLIKE---DVYLSSD---KKIPYKWTAPEAAS 177

Query: 213 GSEVSTNGDAYNYGILLLEMVTR 235
               ST  D +++GILL EM T 
Sbjct: 178 HGTFSTKSDVWSFGILLYEMFTY 200

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 52/193 (26%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI- 137
            IG G F  V  G +   +  VA+K L      A+++F+AE   +  + H NLV+ + + 
Sbjct: 13  TIGKGEFGDVMLGDYRGQK--VAVKCLKDD-STAAQAFLAEASVMTTLRHPNLVQLLGVV 69

Query: 138 --------------------------------------AIDVASALDYLHHHCQELILHC 159
                                                 A+DV   ++YL    ++  +H 
Sbjct: 70  LQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFVHR 126

Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN 219
           D    NVL+  DL A + DF LA+             +  +  + +TA +     + ST 
Sbjct: 127 DLAARNVLVSEDLVAKVSDFGLAK-------EASQGQDSGKLPVKWTAPEALREKKFSTK 179

Query: 220 GDAYNYGILLLEM 232
            D +++GILL E+
Sbjct: 180 SDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 53/198 (26%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           IG G F AV QG +   +  VA+K   I+C   +++F+ E   +  + H+NLVR + +  
Sbjct: 14  IGEGEFGAVLQGEYTGQK--VAVKN--IKCDVTAQAFLEETAVMTKLHHKNLVRLLGVIL 69

Query: 138 ------------------------------------AIDVASALDYLHHHCQELILHCDP 161
                                               ++DVA  ++YL     + ++H D 
Sbjct: 70  HNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDL 126

Query: 162 KPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGD 221
              N+L+  D  A + DF LAR      + +       +  + +TA +     + S+  D
Sbjct: 127 AARNILVSEDGVAKVSDFGLARVGSMGVDNS-------KLPVKWTAPEALKHKKFSSKSD 179

Query: 222 AYNYGILLLEMVTR-RKP 238
            ++YG+LL E+ +  R P
Sbjct: 180 VWSYGVLLWEVFSYGRAP 197

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 132 VRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP 191
           V+F     ++  AL+YLH      I+H D KP N+LLD     HI DF +A         
Sbjct: 102 VKFW--ICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKV-----T 151

Query: 192 TQSSSNGVRRTIGYTALD----YDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF 241
             + +     T GY A +          V    D ++ G+   E +  ++P   
Sbjct: 152 PDTLTTSTSGTPGYMAPEVLCRQGYSVAV----DWWSLGVTAYECLRGKRPYRG 201

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 43/196 (21%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF- 134
           L+  +G G F  V++G+++ N   VA+K L        K F+AE + +K + H  L++  
Sbjct: 10  LLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGTMDP-KDFLAEAQIMKKLRHPKLIQLY 67

Query: 135 --------ISIAIDV---ASALDYLHH------HCQELI------------------LHC 159
                   I I  ++    S L+YL           +LI                  +H 
Sbjct: 68  AVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHR 127

Query: 160 DPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
           D    NVL+  +    + DF LAR  ++++    +    G +  I +TA +  L +  S 
Sbjct: 128 DLAARNVLVGENNICKVADFGLARVIKEDIYEARE----GAKFPIKWTAPEAALYNRFSI 183

Query: 219 NGDAYNYGILLLEMVT 234
             D +++GILL E+VT
Sbjct: 184 KSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 55/204 (26%), Positives = 83/204 (40%), Gaps = 46/204 (22%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIK--VLSIQCQGASKSFMAECKALKNICHRNL 131
           + L +LIG G+F  VY+G+       VAIK   L    + A KS M E   LKN+ H N+
Sbjct: 2   YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNI 61

Query: 132 VRFI-------SIAI------------------------------DVASALDYLHHHCQE 154
           V++I       S+ I                               V   L YLH   ++
Sbjct: 62  VKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLH---EQ 118

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            ++H D K +N+L   D    + DF +A    +VS         V  T  + A +    S
Sbjct: 119 GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD----DASVVGTPYWMAPEVIEMS 174

Query: 215 EVSTNGDAYNYGILLLEMVTRRKP 238
             ST  D ++ G  ++E++T   P
Sbjct: 175 GASTASDIWSLGCTVIELLTGNPP 198

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 74/217 (34%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           F ++  IG G F  VY+         VAIKV+ ++ +   +  + E + LK   H N+V+
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVK 61

Query: 134 FIS--------------------------------------IAIDVASALDYLH-HHCQE 154
           +                                        +  ++   L+YLH +    
Sbjct: 62  YYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNG--- 118

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            I+H D K +N+LL +D    + DF L+          Q S    R T+        +G+
Sbjct: 119 -IIHRDIKAANILLTSDGEVKLIDFGLS---------AQLSDTKARNTM--------VGT 160

Query: 215 ------EVSTNGDAYNY-------GILLLEMVTRRKP 238
                 EV  NG  Y+Y       GI  +E+   + P
Sbjct: 161 PYWMAPEV-INGKPYDYKADIWSLGITAIELAEGKPP 196

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 59.4 bits (142), Expect = 7e-10
 Identities = 57/267 (21%), Positives = 98/267 (36%), Gaps = 59/267 (22%)

Query: 73  GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNI-CH 128
            + ++  +G GSF  VY      +R +VA+KVL+ +        + F+ E + L ++   
Sbjct: 1   SYRILRKLGEGSFGEVYLAR---DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHP 57

Query: 129 RNLVRFI----------------------------------------SIAIDVASALDYL 148
            N+V+                                           I   + SAL+YL
Sbjct: 58  PNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYL 117

Query: 149 HHHCQELILHCDPKPSNVLLDNDLF-AHIGDFELARFRQE--VSNPTQSSSNGVRRTIGY 205
           H      I+H D KP N+LLD D     + DF LA+   +   ++   +  +    T GY
Sbjct: 118 HSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGY 174

Query: 206 TALDYDLGSE---VSTNGDAYNYGILLLEMVTRRKPIDF---MFEGDLNLHNFARMAFPN 259
            A +  LG      S++ D ++ GI L E++T   P +           L     +  P+
Sbjct: 175 MAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPS 234

Query: 260 RVMDIVNLVLLNDNKVLAGTNSNMLRK 286
               +        +K  +     +L K
Sbjct: 235 LASPLSPSNPELISKAASDLLKKLLAK 261

Length = 384

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 58.6 bits (143), Expect = 9e-10
 Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 63/216 (29%)

Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHRNLVRF 134
           +  +G G++  VY+        +VA+K   L  + +G   + + E   LK + H N+V+ 
Sbjct: 4   LEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKL 63

Query: 135 ISIAIDVAS-------------------------------------ALDYLHHHCQELIL 157
           + +                                            L Y H H    IL
Sbjct: 64  LDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHR---IL 120

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D KP N+L++ D    + DF LAR       P ++ ++ V  T+ Y A +  LGS   
Sbjct: 121 HRDLKPQNILINRDGVLKLADFGLARA---FGIPLRTYTHEV-VTLWYRAPEILLGS--- 173

Query: 218 TNGDAYNYGI-------LLLEMVTRRKPIDFMFEGD 246
                Y+  +       +  EM+T  KP+   F GD
Sbjct: 174 ---KHYSTAVDIWSVGCIFAEMIT-GKPL---FPGD 202

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 57/193 (29%), Positives = 86/193 (44%), Gaps = 40/193 (20%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVR----- 133
           +G GS+  VY+G   L   +VA+K + ++  +GA  + + E   LK++ H N+V      
Sbjct: 13  LGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDII 72

Query: 134 ---------FISIAIDVASALDY----LHHH---------------C-QELILHCDPKPS 164
                    F  +  D+   +D     L  H               C Q  +LH D KP 
Sbjct: 73  HTKKTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQ 132

Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAY 223
           N+L+       + DF LAR +   S P+++ SN V  T+ Y   D  LGS E ST+ D +
Sbjct: 133 NLLISERGELKLADFGLARAK---SVPSKTYSNEV-VTLWYRPPDVLLGSTEYSTSLDMW 188

Query: 224 NYGILLLEMVTRR 236
             G +  EM T R
Sbjct: 189 GVGCIFYEMATGR 201

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 47/221 (21%), Positives = 79/221 (35%), Gaps = 68/221 (30%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNLVR 133
           +I  IG GSF  VY      +  +  +K + +        +  + E K LK + H N+++
Sbjct: 4   IIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIK 63

Query: 134 F-----------------------------------------ISIAIDVASALDYLHHHC 152
           +                                         +   + +  AL YLH   
Sbjct: 64  YYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH--- 120

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              ILH D KP N+ L ++    +GDF +++      +  ++        +G T   Y L
Sbjct: 121 SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKT-------VVG-TP--YYL 170

Query: 213 GSEVSTNGDAYNY-------GILLLEMVTRRKPIDFMFEGD 246
             E+      YNY       G +L E+ T + P    FEG+
Sbjct: 171 SPEL-CQNKPYNYKSDIWSLGCVLYELCTLKHP----FEGE 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 49/205 (23%)

Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF 134
           I  IG G++  VY+        +VA+K + ++   +G   + + E K L+ + H N+VR 
Sbjct: 4   IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRL 63

Query: 135 ISIAID---------------------------------------VASALDYLHHHCQEL 155
             I                                          +   L YLH +    
Sbjct: 64  KEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNG--- 120

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           ILH D K SN+L++ND    + DF LAR   + ++     +N V  T+ Y   +  LG+ 
Sbjct: 121 ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS--ADYTNRV-ITLWYRPPELLLGAT 177

Query: 216 VSTNG-DAYNYGILLLEMVTRRKPI 239
                 D ++ G +L E+    KPI
Sbjct: 178 RYGPEVDMWSVGCILAELFL-GKPI 201

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 54/257 (21%), Positives = 92/257 (35%), Gaps = 75/257 (29%)

Query: 76  LINLIGVGSFDAVYQGVFDLNR----AVVAIKVLSIQCQGASKS-FMAECKALKNICHRN 130
            I  +G G F  V    +D         VA+K L+   +   +S F  E + L+ + H N
Sbjct: 8   FIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHEN 67

Query: 131 LVRFISI----------------------------------------AIDVASALDYLHH 150
           +V++  +                                        +  +   +DYL  
Sbjct: 68  IVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGS 127

Query: 151 HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE------VSNPTQSSSNGVRRTIG 204
             Q  I H D    N+L++++    I DF LA+   E      V  P +S        I 
Sbjct: 128 --QRYI-HRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESP-------IF 177

Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLH---NFARMAFPNR- 260
           + A +    S+ S+  D +++G+ L E+ T          GD +      F RM    + 
Sbjct: 178 WYAPECLRTSKFSSASDVWSFGVTLYELFTY---------GDPSQSPPAEFLRMIGIAQG 228

Query: 261 VMDIVNLV-LLNDNKVL 276
            M +  L+ LL + + L
Sbjct: 229 QMIVTRLLELLKEGERL 245

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 47/204 (23%)

Query: 78  NLIGVGSFDAVYQGV-FDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF 134
           N IG G+F  VY  V  D    ++A+K + IQ       K    E K L+ + H NLV++
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGE-LMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKY 64

Query: 135 ISI-------------------------------------AIDVASALDYLHHHCQELIL 157
             +                                      + +   L YLH H    I+
Sbjct: 65  YGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH---GIV 121

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D KP+N+ LD++    +GDF  A   +  +         +  T  Y A +   G +  
Sbjct: 122 HRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGK 181

Query: 218 TNG---DAYNYGILLLEMVTRRKP 238
            +G   D ++ G ++LEM T ++P
Sbjct: 182 GHGRAADIWSLGCVVLEMATGKRP 205

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 57.0 bits (137), Expect = 4e-09
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 46/201 (22%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRN 130
           D +  +  +G GS+  VY+G   +N  +VA+KV+ +Q + G   + + E   LK + H N
Sbjct: 5   DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHAN 64

Query: 131 LVR--------------FISIAIDVASALD-----------------------YLHHHCQ 153
           +V               F  +  D+   +D                       Y+H   Q
Sbjct: 65  IVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIH---Q 121

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             ILH D KP N+L+ +     + DF LAR +   S P+ + SN V  T+ Y   D  LG
Sbjct: 122 RYILHRDLKPQNLLISDTGELKLADFGLARAK---SVPSHTYSNEV-VTLWYRPPDVLLG 177

Query: 214 S-EVSTNGDAYNYGILLLEMV 233
           S E ST  D +  G + +EM+
Sbjct: 178 STEYSTCLDMWGVGCIFVEMI 198

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 56.0 bits (136), Expect = 6e-09
 Identities = 46/214 (21%), Positives = 77/214 (35%), Gaps = 67/214 (31%)

Query: 78  NLIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQCQGASKS----FMAECKALKNICHRN 130
             +G G+F  VY+G     D     VA+K L    + AS+     F+ E + +K + H N
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTL---KEDASEEERKDFLKEARVMKKLGHPN 57

Query: 131 LVRFI----------------------------------------------SIAIDVASA 144
           +VR +                                              S AI +A  
Sbjct: 58  VVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKG 117

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG---VRR 201
           ++YL        +H D    N L+  DL   I DF L+R      +  +  + G   +R 
Sbjct: 118 MEYLASKK---FVHRDLAARNCLVGEDLVVKISDFGLSR-DVYDDDYYRKKTGGKLPIR- 172

Query: 202 TIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR 235
              + A +       ++  D +++G+LL E+ T 
Sbjct: 173 ---WMAPESLKDGIFTSKSDVWSFGVLLWEIFTL 203

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 44/202 (21%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLV------ 132
           +G G++  V++G   L   +VA+K + ++  +GA  + + E   LKN+ H N+V      
Sbjct: 13  LGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDII 72

Query: 133 ---RFISIAID-VASALDYLHHHCQEL------------------------ILHCDPKPS 164
              R +++  + + S L     +C  L                        ILH D KP 
Sbjct: 73  HTERCLTLVFEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQ 132

Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAY 223
           N+L++      + DF LAR +   S PT++ SN V  T+ Y   D  LGS E ST  D +
Sbjct: 133 NLLINEKGELKLADFGLARAK---SVPTKTYSNEV-VTLWYRPPDVLLGSTEYSTPIDMW 188

Query: 224 NYGILLLEMVTRRKPIDFMFEG 245
             G +L EM T R     MF G
Sbjct: 189 GVGCILYEMATGRP----MFPG 206

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 50/195 (25%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVR----- 133
           +G GS+  VY+G+  +N  +VA+KV+S++ + G   + + E   LK + H N+V      
Sbjct: 13  LGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDII 72

Query: 134 ---------FISIAIDVAS-----------------------ALDYLHHHCQELILHCDP 161
                    F  +  D+A                         L Y+H    + ILH D 
Sbjct: 73  HTKETLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHG---QHILHRDL 129

Query: 162 KPSNVLLDNDLFAHIGDFELARF--RQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVST 218
           KP N+L+     +++G+ +LA F   +  S P+Q+ S+ V  T+ Y   D  LG+ + S+
Sbjct: 130 KPQNLLI-----SYLGELKLADFGLARAKSIPSQTYSSEV-VTLWYRPPDVLLGATDYSS 183

Query: 219 NGDAYNYGILLLEMV 233
             D +  G + +EM+
Sbjct: 184 ALDIWGAGCIFIEML 198

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 40/201 (19%)

Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHR 129
             +   LI  +G G F  V+ G ++ N  V A+K L      + +SF+ E + +K + H 
Sbjct: 4   PRESLQLIKKLGNGQFGEVWMGTWNGNTKV-AVKTLKPGTM-SPESFLEEAQIMKKLRHD 61

Query: 130 NLVRFISIA-----------IDVASALDYLHH------HCQELI---------------- 156
            LV+  ++            +   S LD+L            L+                
Sbjct: 62  KLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM 121

Query: 157 --LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I +TA +  L  
Sbjct: 122 NYIHRDLRSANILVGDGLVCKIADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYG 178

Query: 215 EVSTNGDAYNYGILLLEMVTR 235
             +   D +++GILL E+VT+
Sbjct: 179 RFTIKSDVWSFGILLTELVTK 199

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 46/196 (23%)

Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI 137
           + +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +
Sbjct: 12  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGV 70

Query: 138 ---------------------------------------AIDVASALDYLHHHCQELILH 158
                                                  A  ++SA++YL    ++  +H
Sbjct: 71  CTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIH 127

Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    N L+  +    + DF L+R        T ++  G +  I +TA +    ++ S 
Sbjct: 128 RDLAARNCLVGENHLVKVADFGLSRLMTG---DTYTAHAGAKFPIKWTAPESLAYNKFSI 184

Query: 219 NGDAYNYGILLLEMVT 234
             D + +G+LL E+ T
Sbjct: 185 KSDVWAFGVLLWEIAT 200

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 45/197 (22%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
           L   +G G F  V+ G ++     VA+K L     G    ++F+ E + +K + H  LV+
Sbjct: 10  LERKLGAGQFGEVWMGTWN-GTTKVAVKTLK---PGTMSPEAFLQEAQIMKKLRHDKLVQ 65

Query: 134 FISIAIDV------------ASALDYLHH------HCQELI------------------L 157
             ++  +              S LD+L           +L+                  +
Sbjct: 66  LYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYI 125

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N+L+  +L   I DF LAR    + +   ++  G +  I +TA +       +
Sbjct: 126 HRDLAARNILVGENLVCKIADFGLARL---IEDDEYTAREGAKFPIKWTAPEAANYGRFT 182

Query: 218 TNGDAYNYGILLLEMVT 234
              D +++GILL E+VT
Sbjct: 183 IKSDVWSFGILLTEIVT 199

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 47/199 (23%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRNLVR--- 133
           +G GSF  V          + A+KVL    I  +   +  + E   L  I H  +V+   
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 134 -FIS---------------------------------IAIDVASALDYLHHHCQELILHC 159
            F +                                  A ++  AL+YLH      I++ 
Sbjct: 61  AFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALEYLH---SLGIIYR 117

Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN 219
           D KP N+LLD D    + DF LA+   E+S+   S +N    T  Y A +  LG      
Sbjct: 118 DLKPENILLDADGHIKLTDFGLAK---ELSS-EGSRTNTFCGTPEYLAPEVLLGKGYGKA 173

Query: 220 GDAYNYGILLLEMVTRRKP 238
            D ++ G+LL EM+T + P
Sbjct: 174 VDWWSLGVLLYEMLTGKPP 192

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 53.5 bits (128), Expect = 5e-08
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 40/196 (20%)

Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVR-- 133
           ++ +G G++  VY+G   L   +VA+K + ++ + GA  + + E   LK++ H N+V   
Sbjct: 11  LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLH 70

Query: 134 ------------FISIAIDVASALD----YLHHHCQEL----------------ILHCDP 161
                       F  +  D+   LD     ++ H  +L                +LH D 
Sbjct: 71  DIIHTEKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDL 130

Query: 162 KPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNG 220
           KP N+L++      + DF LAR +   S PT++ SN V  T+ Y   D  LGS + ST  
Sbjct: 131 KPQNLLINERGELKLADFGLARAK---SIPTKTYSNEV-VTLWYRPPDILLGSTDYSTQI 186

Query: 221 DAYNYGILLLEMVTRR 236
           D +  G +  EM T R
Sbjct: 187 DMWGVGCIFYEMSTGR 202

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 52/215 (24%), Positives = 82/215 (38%), Gaps = 57/215 (26%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRN 130
           D + LI +IGVG+   VY  +   N   VAIK + + +CQ +      E +A+    H N
Sbjct: 1   DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPN 60

Query: 131 LV----------------RFIS---------------------IAI---DVASALDYLHH 150
           +V                 ++S                     IA    +V   L+YLH 
Sbjct: 61  VVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS 120

Query: 151 HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
           + Q   +H D K  N+LL  D    I DF ++     +++    +   VR+T   T    
Sbjct: 121 NGQ---IHRDIKAGNILLGEDGSVKIADFGVSAS---LADGGDRTR-KVRKTFVGTP--C 171

Query: 211 DLGSEVSTNGDAYN-------YGILLLEMVTRRKP 238
            +  EV      Y+       +GI  +E+ T   P
Sbjct: 172 WMAPEVMEQVHGYDFKADIWSFGITAIELATGAAP 206

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 14  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 71

Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 72  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 131

Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 132 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 188

Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 189 FGILLTELTTK 199

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 63/209 (30%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSI-----QCQGASKSFMAECKALKNICHRNLVR 133
           L+G GSF +VY+G+   +    A+K +S+       Q A K    E   L  + H N+V+
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 134 FISIAID-------------------------------------VASALDYLHHHCQELI 156
           ++    +                                     +   L+YLH       
Sbjct: 67  YLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLH---DRNT 123

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV 216
           +H D K +N+L+D +    + DF +A+         Q       ++   +   Y +  EV
Sbjct: 124 VHRDIKGANILVDTNGVVKLADFGMAK---------QVVEFSFAKSFKGSP--YWMAPEV 172

Query: 217 STNGDAYNY-------GILLLEMVTRRKP 238
                 Y         G  +LEM T + P
Sbjct: 173 IAQQGGYGLAADIWSLGCTVLEMATGKPP 201

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 42/195 (21%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRFISI- 137
           +G G++  VY+G       +VA+K + +   +G   + + E   +K + H N+VR   + 
Sbjct: 8   LGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVI 67

Query: 138 ----------------------------AIDVASALDYLHH------HCQE-LILHCDPK 162
                                       A+D  +   + +        C E  +LH D K
Sbjct: 68  HTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLK 127

Query: 163 PSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-STNGD 221
           P N+L++      + DF LAR       P  + SN V  T+ Y A D  LGS   ST+ D
Sbjct: 128 PQNLLINKRGELKLADFGLAR---AFGIPVNTFSNEV-VTLWYRAPDVLLGSRTYSTSID 183

Query: 222 AYNYGILLLEMVTRR 236
            ++ G ++ EM+T R
Sbjct: 184 IWSVGCIMAEMITGR 198

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 49/229 (21%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
           +   L+  +G G F  V+ G ++ +  V AIK L  Q   + ++F+AE   +K + H  L
Sbjct: 6   ETLKLVKKLGAGQFGEVWMGYYNGHTKV-AIKSLK-QGSMSPEAFLAEANLMKQLQHPRL 63

Query: 132 VRF--------------------------------------ISIAIDVASALDYLHHHCQ 153
           VR                                       I +A  +A  + ++    +
Sbjct: 64  VRLYAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---R 120

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
           +  +H D + +N+L+   L   I DF LAR    + +   ++  G +  I +TA +    
Sbjct: 121 KNYIHRDLRAANILVSETLCCKIADFGLARL---IEDNEYTAREGAKFPIKWTAPEAINY 177

Query: 214 SEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
              +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 178 GTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPD 226

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 53/233 (22%), Positives = 84/233 (36%), Gaps = 72/233 (30%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI---QCQGASKSFMAECKALKNIC 127
              F +   IG G F  VY+ +  L+  VVA+K + I       A +  + E   LK + 
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 128 HRNLVRFISIAID-----------------------------------------VASALD 146
           H N++++++  I+                                         + SAL+
Sbjct: 61  HPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALE 120

Query: 147 YLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE--------VSNPTQSSSNG 198
           ++H      I+H D KP+NV +       +GD  L RF           V  P   S   
Sbjct: 121 HMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPER 177

Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-LNLH 250
           +          Y+  S      D ++ G LL EM   + P    F GD +NL+
Sbjct: 178 IHEN------GYNFKS------DIWSLGCLLYEMAALQSP----FYGDKMNLY 214

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R I  A  +   L++LH   Q  I++ D KP NVLLD+     I D  LA     V    
Sbjct: 96  RAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLA-----VELKG 147

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
                G   T GY A +   G     + D +  G  L EM+  R P
Sbjct: 148 GKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSP 193

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 61/208 (29%)

Query: 76  LINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQCQGASKS-FMAECKALKNICHRNL 131
           +  +IG G F  V +G   L       VAIK L        +  F+ E   +    H N+
Sbjct: 8   IEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNI 67

Query: 132 VRFISI-----------------AID---------------------VASALDYLHHHCQ 153
           +R   +                 ++D                     +AS + YL     
Sbjct: 68  IRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMN- 126

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG---VRRT----IGYT 206
              +H D    N+L++++L   + DF L+R R E S  T ++  G   +R T    I Y 
Sbjct: 127 --YVHRDLAARNILVNSNLVCKVSDFGLSR-RLEDSEATYTTKGGKIPIRWTAPEAIAYR 183

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT 234
                     ++  D +++GI++ E+++
Sbjct: 184 KF--------TSASDVWSFGIVMWEVMS 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 66/210 (31%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLS----------IQCQGASKSFMAECK--ALKNI 126
           LIG G++ AVY+G       VVA+K+++          IQ + A    +++ +     NI
Sbjct: 8   LIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVA---LLSQLRQSQPPNI 64

Query: 127 -------------------CH----RNLVR-------FISIAI-DVASALDYLHHHCQEL 155
                                    R L++       +IS+ I +V  AL Y+H      
Sbjct: 65  TKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVG--- 121

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           ++H D K +N+L+ N     + DF +A    + S           +   +    Y +  E
Sbjct: 122 VIHRDIKAANILVTNTGNVKLCDFGVAALLNQNS----------SKRSTFVGTPYWMAPE 171

Query: 216 VSTNGDAYNY-------GILLLEMVTRRKP 238
           V T G  Y+        GI + EM T   P
Sbjct: 172 VITEGKYYDTKADIWSLGITIYEMATGNPP 201

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 47/221 (21%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNL 131
           +  I  IG G++  VY+G       +VA+K + ++ +  G   + + E   LK + H N+
Sbjct: 2   YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNI 61

Query: 132 VRFISI--------------AIDVASALD---------------YLHHHCQEL------- 155
           V    +              ++D+   LD               YL+   Q +       
Sbjct: 62  VCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR 121

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           +LH D KP N+L+DN     + DF LAR       P +  ++ V  T+ Y A +  LGS 
Sbjct: 122 VLHRDLKPQNLLIDNKGVIKLADFGLAR---AFGIPVRVYTHEV-VTLWYRAPEVLLGSP 177

Query: 216 -VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
             ST  D ++ G +  EM T++     +F GD  +    R+
Sbjct: 178 RYSTPVDIWSIGTIFAEMATKKP----LFHGDSEIDQLFRI 214

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 46/211 (21%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHRNL 131
           F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H N+
Sbjct: 2   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 61

Query: 132 VRFISI----------------------------AIDVASALDYLHHHCQEL-------I 156
           V+ + +                             I +     YL    Q L       +
Sbjct: 62  VKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRV 121

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV 216
           LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG + 
Sbjct: 122 LHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLGCKY 177

Query: 217 -STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            ST  D ++ G +  EMVTRR     +F GD
Sbjct: 178 YSTAVDIWSLGCIFAEMVTRRA----LFPGD 204

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 40/191 (20%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L        ++F+ E + +K + H  LV   ++  
Sbjct: 14  LGQGCFGEVWMGTWN-GTTKVAIKTLKPGTM-MPEAFLQEAQIMKKLRHDKLVPLYAVVS 71

Query: 139 ----------IDVASALDYL------HHHCQELI------------------LHCDPKPS 164
                     +   S LD+L      +    +L+                  +H D + +
Sbjct: 72  EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAA 131

Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+ ++L   I DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 132 NILVGDNLVCKIADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 188

Query: 225 YGILLLEMVTR 235
           +GILL E+VT+
Sbjct: 189 FGILLTELVTK 199

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 56/226 (24%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           D F +I  IG G++  VY+        +VA+K   L  + +G   + + E K L+ + HR
Sbjct: 7   DKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHR 66

Query: 130 NLVRFISIAIDVASALD-------------YLHH----------------HCQELI---- 156
           N+V    I  D   ALD             Y+ H                H +  +    
Sbjct: 67  NIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLL 126

Query: 157 -----------LHCDPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNGVRRTIG 204
                      LH D K SN+LL+N     + DF LAR +  E S P    +N V  T+ 
Sbjct: 127 EGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPY---TNKV-ITLW 182

Query: 205 YTALDYDLGSEVSTNG-DAYNYGILLLEMVTRRKPIDFMFEGDLNL 249
           Y   +  LG E      D ++ G +L E+ T++     +F+ +  L
Sbjct: 183 YRPPELLLGEERYGPAIDVWSCGCILGELFTKKP----IFQANQEL 224

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 42/204 (20%)

Query: 77  INLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNL 131
           I ++G G+F  VY+GV+    +  +  VAIKVL  +    A+K  + E   + ++ H ++
Sbjct: 12  IKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHV 71

Query: 132 VR-----------FISIAIDVASALDYLHHHCQEL-----------------------IL 157
           VR            I+  + +   LDY+ +H   +                       ++
Sbjct: 72  VRLLGICLSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLV 131

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    NVL+       I DF LA+      +  +  + G +  I + AL+  L    +
Sbjct: 132 HRDLAARNVLVKTPQHVKITDFGLAKLLD--VDEKEYHAEGGKVPIKWMALESILHRIYT 189

Query: 218 TNGDAYNYGILLLEMVT-RRKPID 240
              D ++YG+ + E++T   KP +
Sbjct: 190 HKSDVWSYGVTVWELMTFGAKPYE 213

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 40/193 (20%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRFISIA 138
           +G G++  V++G   L   +VA+K + ++ + GA  + + E   LK++ H N+V    I 
Sbjct: 14  LGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIV 73

Query: 139 --------------------IDVASALDYLHH-------------HCQEL-ILHCDPKPS 164
                               +D    +  +H+             +C    +LH D KP 
Sbjct: 74  HTDKSLTLVFEYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQ 133

Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAY 223
           N+L++      + DF LAR +   S PT++ SN V  T+ Y   D  LG SE ST  D +
Sbjct: 134 NLLINERGELKLADFGLARAK---SVPTKTYSNEV-VTLWYRPPDVLLGSSEYSTQIDMW 189

Query: 224 NYGILLLEMVTRR 236
             G +  EM + R
Sbjct: 190 GVGCIFFEMASGR 202

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 41/202 (20%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
           +   L+  +G G F  V+ G ++ N   VA+K L        ++F+ E   +K + H  L
Sbjct: 6   ESIKLVKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSV-QAFLEEANLMKTLQHDKL 63

Query: 132 VRFISIA------------IDVASALDYLHHH------CQELI----------------- 156
           VR  ++             +   S LD+L           +LI                 
Sbjct: 64  VRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN 123

Query: 157 -LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D + +NVL+   L   I DF LAR    + +   ++  G +  I +TA +      
Sbjct: 124 YIHRDLRAANVLVSESLMCKIADFGLARV---IEDNEYTAREGAKFPIKWTAPEAINFGS 180

Query: 216 VSTNGDAYNYGILLLEMVTRRK 237
            +   D +++GILL E+VT  K
Sbjct: 181 FTIKSDVWSFGILLYEIVTYGK 202

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R       + S L++LH   Q  I++ D KP NVLLDND    I D  LA   ++     
Sbjct: 98  RACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKD----G 150

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           QS + G   T G+ A +   G E   + D +  G+ L EM+  R P
Sbjct: 151 QSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGP 196

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 45/215 (20%)

Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQG--ASKSFMAEC 120
           +LK T+    + ++G G+F  VY+G++    +  +  VAIK+L+ +  G  A+  FM E 
Sbjct: 3   ILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILN-ETTGPKANVEFMDEA 60

Query: 121 KALKNICHRNLVRFISIAIDV-----------ASALDYLHHH------------CQEL-- 155
             + ++ H +LVR + + +                LDY+H H            C ++  
Sbjct: 61  LIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAK 120

Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+ +     I DF LAR  +   +  + +++G +  I + 
Sbjct: 121 GMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLE--GDEKEYNADGGKMPIKWM 178

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+     + +   D ++YG+ + E++T   KP D
Sbjct: 179 ALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 213

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 44/196 (22%)

Query: 80  IGVGSFDAVYQGVF---DLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G+F +V +GV+         VA+K L         K F+ E   +  + H  +VR I
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 136 SI------------------------------------AIDVASALDYLHHHCQELILHC 159
            +                                    A  VA  + YL     +  +H 
Sbjct: 63  GVCKGEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLE---SKHFVHR 119

Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN 219
           D    NVLL N   A I DF ++R     S+  ++++ G R  + + A +     + S+ 
Sbjct: 120 DLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAG-RWPLKWYAPECINYGKFSSK 178

Query: 220 GDAYNYGILLLEMVTR 235
            D ++YG+ L E  + 
Sbjct: 179 SDVWSYGVTLWEAFSY 194

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 76/233 (32%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRFISI 137
           +G G+F  VY+        VVA+K + +  +  G   + + E K LK + H N+V  I +
Sbjct: 16  LGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDM 75

Query: 138 AI----------------------DVASALD-----------------------YLHHHC 152
           A+                      D++  L+                       YLH   
Sbjct: 76  AVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLH--- 132

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNGVRRTIGYTAL--- 208
           +  ILH D K +N+L+DN     I DF LAR +     NP      G R+   YT L   
Sbjct: 133 ENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRK---YTNLVVT 189

Query: 209 -----------DYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLH 250
                      +    + V    D +  G +  EM TRR PI    +G  ++ 
Sbjct: 190 RWYRPPELLLGERRYTTAV----DIWGIGCVFAEMFTRR-PI---LQGKSDID 234

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 45/153 (29%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIK-----VLSIQCQGASKSFMAECKALKNICH 128
           +     +G G++  VY+        +VAIK            G + + + E K L+ + H
Sbjct: 2   YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKH 61

Query: 129 RNLV---------RFISIAIDVAS----------------------------ALDYLHHH 151
            N++           I++  +                                L+YLH +
Sbjct: 62  PNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSN 121

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARF 184
               ILH D KP+N+L+ +D    + DF LAR 
Sbjct: 122 ---WILHRDLKPNNLLIASDGVLKLADFGLARS 151

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 18/107 (16%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           + +  A DVA  +DYL    Q+  +H D    N+L+  +  A I DF L+R  QEV    
Sbjct: 125 QLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR-GQEVY--- 177

Query: 193 QSSSNGVRRTIG-----YTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
                 V++T+G     + A++    S  +TN D ++YG+LL E+V+
Sbjct: 178 ------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 218

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 46/199 (23%)

Query: 79  LIGVGSFDAVYQGVFDL---NRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRNLVRF 134
           +IG G F  V +G   L       VAIK L     +   + F++E   +    H N++  
Sbjct: 11  VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHL 70

Query: 135 ISI-----------------AID---------------------VASALDYLHHHCQELI 156
             +                 A+D                     +A+ + YL    +   
Sbjct: 71  EGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYL---SEMNY 127

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQE-VSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           +H D    N+L++++L   + DF L+RF ++  S+PT +SS G +  I +TA +     +
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRK 187

Query: 216 VSTNGDAYNYGILLLEMVT 234
            ++  D ++YGI++ E+++
Sbjct: 188 FTSASDVWSYGIVMWEVMS 206

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 74/221 (33%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRA---VVAIKVLSIQCQGASKSF 116
           P+E Y++L K          IG G+   VY+     +RA    VAIK + ++ Q      
Sbjct: 17  PRELYKNLEK----------IGEGASGEVYKAT---DRATGKEVAIKKMRLRKQNKELII 63

Query: 117 MAECKALKNICHRNLVRFIS--------------------------------------IA 138
             E   +K+  H N+V +                                        + 
Sbjct: 64  N-EILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVC 122

Query: 139 IDVASALDYLH-HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ-SSS 196
            +V   L+YLH  +     +H D K  N+LL  D    + DF  A          Q +  
Sbjct: 123 REVLQGLEYLHSQNV----IHRDIKSDNILLSKDGSVKLADFGFA---------AQLTKE 169

Query: 197 NGVRRTIGYT----ALDYDLGSEVSTNGDAYNYGILLLEMV 233
              R ++  T    A +     +     D ++ GI+ +EM 
Sbjct: 170 KSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMA 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 54/197 (27%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLV--- 132
           L+  IG G F  V  G +  N+  VA+K   I+    +++F+AE   +  + H NLV   
Sbjct: 10  LLQTIGKGEFGDVMLGDYRGNK--VAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLL 65

Query: 133 -------------------------------------RFISIAIDVASALDYLHHHCQEL 155
                                                  +  ++DV  A++YL  +    
Sbjct: 66  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN--- 122

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    NVL+  D  A + DF L +   E S+ TQ +    +  + +TA +     +
Sbjct: 123 FVHRDLAARNVLVSEDNVAKVSDFGLTK---EASS-TQDTG---KLPVKWTAPEALREKK 175

Query: 216 VSTNGDAYNYGILLLEM 232
            ST  D +++GILL E+
Sbjct: 176 FSTKSDVWSFGILLWEI 192

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 50/202 (24%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
            +  +G G F  V+ G +   +  VAIK++    +GA     F+ E K +  + H NLV+
Sbjct: 8   FLKELGSGQFGVVHLGKW-RGKIDVAIKMIR---EGAMSEDDFIEEAKVMMKLSHPNLVQ 63

Query: 134 F--------------------------------------ISIAIDVASALDYLHHHCQEL 155
                                                  + +  DV  A++YL  +    
Sbjct: 64  LYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNG--- 120

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N L+  D    + DF LAR+   V +   +SS G +  + +   +    S 
Sbjct: 121 FIHRDLAARNCLVGEDNVVKVSDFGLARY---VLDDQYTSSQGTKFPVKWAPPEVFDYSR 177

Query: 216 VSTNGDAYNYGILLLEMVTRRK 237
            S+  D +++G+L+ E+ +  K
Sbjct: 178 FSSKSDVWSFGVLMWEVFSEGK 199

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 40/195 (20%)

Query: 79  LIGVGSFDAVYQGVFDL---NRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRNLVRF 134
           +IG G F  V++G+  +       VAIK L     +   + F++E   +    H N++R 
Sbjct: 12  VIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRL 71

Query: 135 ISIAIDVA-----------SALD-YLHHHCQEL-----------------------ILHC 159
             +                 ALD YL  H  E                         +H 
Sbjct: 72  EGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHR 131

Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN 219
           D    N+L++++L   + DF L+R  ++    T ++S G +  I +TA +     + ++ 
Sbjct: 132 DLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGG-KIPIRWTAPEAIAYRKFTSA 190

Query: 220 GDAYNYGILLLEMVT 234
            D +++GI++ E+++
Sbjct: 191 SDVWSFGIVMWEVMS 205

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 47/155 (30%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS-IQCQGASKSFM-AECKALKNICHRNLVR 133
           ++  IG GSF  V +     +  ++  K +         K  + +E   L+ + H N+VR
Sbjct: 4   VLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVR 63

Query: 134 FI-------------------------------------------SIAIDVASALDYLHH 150
           +                                             I   +  AL   H+
Sbjct: 64  YYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHN 123

Query: 151 --HCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                  +LH D KP+N+ LD +    +GDF LA+
Sbjct: 124 RSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAK 158

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 62/219 (28%)

Query: 77  INLIGVGSFDAVYQGVFDLNRA-VVAIKVLSIQC--QGASKSFMAECKALKNIC---HRN 130
           +  IG G++  VY+   DLN    VA+K + +    +G   S + E   LK +    H N
Sbjct: 4   LAEIGEGAYGTVYKAR-DLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPN 62

Query: 131 LVRF------------ISIAI-------DVA------------------------SALDY 147
           +VR             + + +       D+A                          +D+
Sbjct: 63  IVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDF 122

Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
           LH H    I+H D KP N+L+ +D    I DF LAR         + +   V  T+ Y A
Sbjct: 123 LHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIYSF-----EMALTSVVVTLWYRA 174

Query: 208 LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            +  L S  +T  D ++ G +  E+  RR+P+   F G 
Sbjct: 175 PEVLLQSSYATPVDMWSVGCIFAELF-RRRPL---FRGT 209

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 45/215 (20%)

Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVFDLN----RAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++       +  VAIK L       A+K  + E  
Sbjct: 3   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 61

Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 62  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 120

Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     ++  +  + G +  I + 
Sbjct: 121 GMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--ADEKEYHAEGGKVPIKWM 178

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 179 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 213

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 51/224 (22%), Positives = 81/224 (36%), Gaps = 55/224 (24%)

Query: 73  GFPLINLIGVGSFDAVYQGVFDLNR-----AVVAIKVLSIQCQGASKSFMAECKALKNIC 127
            + +   IG G++  VY+      +     A+   K    Q  G S+S   E   L+ + 
Sbjct: 1   KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELK 60

Query: 128 HRNLVRFISIAID-----VASALDY--------LHHHCQ--------------------- 153
           H N+V  + + ++     V    DY        +  H Q                     
Sbjct: 61  HENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNG 120

Query: 154 ------ELILHCDPKPSNVLLDNDLFAH----IGDFELARFRQEVSNPTQSSSNGVRRTI 203
                   +LH D KP+N+L+  +        IGD  LAR       P  +  + V  TI
Sbjct: 121 VHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPL-ADLDPVVVTI 179

Query: 204 GYTALDYDLGSEVSTNG-DAYNYGILLLEMVTRRKPIDFMFEGD 246
            Y A +  LG+   T   D +  G +  E++T   PI   F+G 
Sbjct: 180 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTLE-PI---FKGR 219

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 45/209 (21%), Positives = 68/209 (32%), Gaps = 66/209 (31%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSI---QCQGASKSFMAECKALKNICHRNLVRF-- 134
           IG GSF AVY         VVAIK +S    Q     +  + E + L+ + H N + +  
Sbjct: 23  IGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKG 82

Query: 135 -----------------------------------ISIAIDVASALDYLHHHCQELILHC 159
                                               +I       L YLH H +   +H 
Sbjct: 83  CYLREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHER---IHR 139

Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV--- 216
           D K  N+LL       + DF  A     + +P  S          +    Y +  EV   
Sbjct: 140 DIKAGNILLTEPGTVKLADFGSA----SLVSPANS----------FVGTPYWMAPEVILA 185

Query: 217 ------STNGDAYNYGILLLEMVTRRKPI 239
                     D ++ GI  +E+  R+ P+
Sbjct: 186 MDEGQYDGKVDVWSLGITCIELAERKPPL 214

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R +  A ++   L+ LH   QE I++ D KP N+LLD+     I D  LA     V  P 
Sbjct: 103 RAVFYAAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLA-----VHVPE 154

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
             +  G   T+GY A +       + + D +  G LL EM+  + P
Sbjct: 155 GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSP 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS-NPTQSS 195
           IA+ V   L YLH   +  I+H D KPSN+L++       G  +L  F   VS     S 
Sbjct: 105 IAVAVLKGLTYLHE--KHKIIHRDVKPSNILVN-----SRGQIKLCDF--GVSGQLVNSL 155

Query: 196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF 241
           +     T  Y A +   G++ S   D ++ G+ L+E+ T R P   
Sbjct: 156 AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPP 201

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 50/206 (24%)

Query: 78  NLIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICHRNLVR 133
            +IG G F  VY G     D  +   A+K L+ I      + F+ E   +K+  H N++ 
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 134 FISIAID---------------------------------------VASALDYLHHHCQE 154
            + I +                                        VA  ++YL     +
Sbjct: 61  LLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYL---ASK 117

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELAR--FRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
             +H D    N +LD      + DF LAR  + +E  +    +  G +  + + AL+   
Sbjct: 118 KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHT--GAKLPVKWMALESLQ 175

Query: 213 GSEVSTNGDAYNYGILLLEMVTRRKP 238
             + +T  D +++G+LL E++TR  P
Sbjct: 176 TQKFTTKSDVWSFGVLLWELMTRGAP 201

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 48/156 (30%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS------IQCQGASKSFMAECKALKNICHR 129
           L+  IG G++  V   V       VAIK +S      I      K  + E K L+++ H 
Sbjct: 4   LLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDA----KRILREIKLLRHLRHE 59

Query: 130 NLVRFISIAIDVASA--------LDYLHH---------------HCQEL----------- 155
           N++  + I    +           + +                 H Q             
Sbjct: 60  NIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYL 119

Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQE 187
               ++H D KPSN+L++++    I DF LAR    
Sbjct: 120 HSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDP 155

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 45/147 (30%)

Query: 79  LIGVGSFDAVYQGVFD--LNRAV-VAIKVL-SIQCQGASKSFMAECKALKNICHRNLVRF 134
            +G GSF  V +G +     + + VA+K L S +       F+ E   + ++ H NL+R 
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRL 61

Query: 135 ISI--------------------------------------AIDVASALDYLHHHCQELI 156
             +                                      A+ +A+ + YL     +  
Sbjct: 62  YGVVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLE---SKRF 118

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELAR 183
           +H D    N+LL +D    IGDF L R
Sbjct: 119 IHRDLAARNILLASDDKVKIGDFGLMR 145

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 7/144 (4%)

Query: 121 KALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE 180
           +  K I  +N     +I  D+ + L+Y+H H    I H D KP N+++D +   +I D+ 
Sbjct: 115 EIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHG---ISHGDIKPENIMVDGNNRGYIIDYG 171

Query: 181 LARF---RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRK 237
           +A       +    ++   +  R T+ Y  LD   G+ V+  GD  + G  +L+    + 
Sbjct: 172 IASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKL 231

Query: 238 PIDFMFEGDLNLHNFARMAFPNRV 261
           P    F  + NL + A+  F  R+
Sbjct: 232 PWK-GFGHNGNLIHAAKCDFIKRL 254

Length = 294

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 54/204 (26%)

Query: 76  LINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
            +  +G G F  V    ++G +D     VAIK++  +   +   F+ E K +  + H  L
Sbjct: 8   FLKELGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMKLSHEKL 61

Query: 132 VRF--------------------------------------ISIAIDVASALDYLHHHCQ 153
           V+                                       + +  DV   + YL     
Sbjct: 62  VQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK-- 119

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
              +H D    N L+D+     + DF L+R+   V +   +SS G +  + ++  +  L 
Sbjct: 120 -QFIHRDLAARNCLVDDQGCVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLLY 175

Query: 214 SEVSTNGDAYNYGILLLEMVTRRK 237
           S+ S+  D + +G+L+ E+ +  K
Sbjct: 176 SKFSSKSDVWAFGVLMWEVYSLGK 199

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 41/202 (20%)

Query: 77  INLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNL 131
           I ++G G F  V    Y    D    +VA+K L  +C Q  +  +  E   LK + H N+
Sbjct: 9   IRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENI 68

Query: 132 VRF--------------ISIAIDVASALDYLHHH----CQELI----------------- 156
           V++              I   + + S  DYL  H     Q L+                 
Sbjct: 69  VKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHY 128

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV 216
           +H D    NVLLDND    IGDF LA+   E     +   +G      Y A++    ++ 
Sbjct: 129 IHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWY-AVECLKENKF 187

Query: 217 STNGDAYNYGILLLEMVTRRKP 238
           S   D +++G+ L E++T    
Sbjct: 188 SYASDVWSFGVTLYELLTHCDS 209

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 39/152 (25%), Positives = 55/152 (36%), Gaps = 43/152 (28%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH 128
           D F  I  +G GSF  V       +    A+K+LS   I      +  + E + L++I H
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRH 60

Query: 129 RNLVRFIS-------------------------------------IAIDVASALDYLHHH 151
             LV                                          A  V  AL+YLH  
Sbjct: 61  PFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHS- 119

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
               I++ D KP N+LLD+D +  I DF  A+
Sbjct: 120 --LDIVYRDLKPENLLLDSDGYIKITDFGFAK 149

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH H    ++H D KP N+L+ +     + DF LAR         Q +   V  T+
Sbjct: 122 GLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS-----FQMALTSVVVTL 173

Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            Y A +  L S  +T  D ++ G +  EM  RRKP   +F G  ++    ++
Sbjct: 174 WYRAPEVLLQSSYATPVDLWSVGCIFAEMF-RRKP---LFRGSSDVDQLGKI 221

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 115 SFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA 174
           +F  E      +  + L++F   A DVA+ + YL    ++  +H D    NVL+  +L +
Sbjct: 105 AFAKEHGTASTLTSQQLLQF---ASDVATGMQYL---SEKQFIHRDLAARNVLVGENLAS 158

Query: 175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
            I DF L+R  +     T       R  + + A++    S  +T  D +++G+LL E+V+
Sbjct: 159 KIADFGLSRGEEVYVKKTMG-----RLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVS 213

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 45/215 (20%)

Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQCQ-GASKSFMAE-- 119
           +LK T+    + ++G G+F  VY+G++  +    +  VAIKVL       A+K  + E  
Sbjct: 3   ILKETE-LKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAY 61

Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ ++  +     LDY+  +            C ++  
Sbjct: 62  VMAGVGSPYVCRLL-GICLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAK 120

Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+ +     I DF LAR      + T+  ++G +  I + 
Sbjct: 121 GMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLD--IDETEYHADGGKVPIKWM 178

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 179 ALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYD 213

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT 202
             LD+LH +C   I+H D KP N+L+ +     + DF LAR         Q +   V  T
Sbjct: 119 RGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYS-----CQMALTPVVVT 170

Query: 203 IGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           + Y A +  L S  +T  D ++ G +  EM  RRKP+
Sbjct: 171 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMF-RRKPL 206

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R +  A ++   L+ LH   +E  ++ D KP N+LLD+     I D  LA     V  P 
Sbjct: 103 RALFYAAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLA-----VKIPE 154

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
             S  G   T+GY A +       + + D +  G L+ EM+  + P
Sbjct: 155 GESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSP 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 21/121 (17%)

Query: 134 FISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH--IGDFELARFRQ----- 186
           F+SI   + + ++Y+H    + +LH D KP N+LL   LF    I D+  A F++     
Sbjct: 115 FLSIFHKICATIEYVH---SKGVLHRDLKPDNILLG--LFGEVVILDWGAAIFKKLEEED 169

Query: 187 ----EVSNPTQSSSN-----GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRK 237
               +V       S+      +  T  Y A +  LG   S + D Y  G++L +M+T   
Sbjct: 170 LLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSF 229

Query: 238 P 238
           P
Sbjct: 230 P 230

Length = 932

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
           AL Y+H     +I H D KPSN+LL++D    + DF LAR
Sbjct: 119 ALKYIH--SGNVI-HRDLKPSNILLNSDCRVKLADFGLAR 155

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 47/197 (23%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSI--QCQGASKSFMAECKALKNICHRNLV----- 132
           IG G++  VY+    L   +VAIK + +  + +G  K+ + E K LK + H N++     
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 133 --------------------------------RFISIAIDVASALDYLHHHCQELILHCD 160
                                              S    +   L + H H    ILH D
Sbjct: 67  FRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHG---ILHRD 123

Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-STN 219
            KP N+L++ +    + DF LAR      +P +  ++ V  T  Y A +  LG +  ST 
Sbjct: 124 LKPENLLINTEGVLKLADFGLAR---SFGSPVRPYTHYV-VTRWYRAPELLLGDKGYSTP 179

Query: 220 GDAYNYGILLLEMVTRR 236
            D ++ G +  E+++RR
Sbjct: 180 VDIWSVGCIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 12/115 (10%)

Query: 137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS 196
           +A  + S + YLH   +  I+H D KPSN+L+++     I DF ++R   +  +P  SS 
Sbjct: 173 VARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSV 229

Query: 197 NGVRRTIGYTA---LDYDL--GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
                TI Y +   ++ DL  G+     GD ++ G+ +LE    R P     +GD
Sbjct: 230 G----TIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGD 280

Length = 353

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 50/208 (24%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNL 131
           F  +N IG G++  VY+     +  +VA+K + +  +  G   S + E   L N+ H N+
Sbjct: 9   FEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNI 68

Query: 132 VRFISIAI----------------DVAS-----------------------ALDYLHHHC 152
           V    + +                D+AS                        L YLH + 
Sbjct: 69  VELKEVVVGKHLDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENF 128

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              I+H D K SN+LL +     I DF LAR       P +  +  V  T+ Y A +  L
Sbjct: 129 ---IIHRDLKVSNLLLTDKGCLKIADFGLAR---TYGLPAKPMTPKV-VTLWYRAPELLL 181

Query: 213 GSEVSTNG-DAYNYGILLLEMVTRRKPI 239
           G    T   D +  G +L E++   KP+
Sbjct: 182 GCTTYTTAIDMWAVGCILAELLA-HKPL 208

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 43/144 (29%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           F ++  +G GS+ +VY+ +      VVAIKV+ ++     +  + E   LK      +V+
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVE--EDLQEIIKEISILKQCDSPYIVK 62

Query: 134 F-------------------------------------IS-IAIDVASALDYLHHHCQEL 155
           +                                     I+ I       L+YLH +    
Sbjct: 63  YYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN---K 119

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDF 179
            +H D K  N+LL+ +  A + DF
Sbjct: 120 KIHRDIKAGNILLNEEGQAKLADF 143

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 57/211 (27%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVR---- 133
           IG G++  VY+    +    +A+K + ++ +  G   + + E   LK + H N+VR    
Sbjct: 10  IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDV 69

Query: 134 ----------FISIAIDVASALD------------------------YLHHHCQELILHC 159
                     F  + +D+   +D                        Y H H    +LH 
Sbjct: 70  VHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHR 126

Query: 160 DPKPSNVLLD---NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-E 215
           D KP N+L+D   N L   + DF LAR       P ++ ++ V  T+ Y A +  LGS  
Sbjct: 127 DLKPQNLLIDRRTNAL--KLADFGLAR---AFGIPVRTFTHEV-VTLWYRAPEILLGSRH 180

Query: 216 VSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            ST  D ++ G +  EMV ++     +F GD
Sbjct: 181 YSTPVDIWSVGCIFAEMVNQKP----LFPGD 207

Length = 294

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 51/198 (25%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA 138
            IG G+F  VY+GV   N  V      S       + F+ E + LK   H N+V+ I + 
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 139 --------------------------------------IDVASALDYLHHHCQELILHCD 160
                                                 +D A+ ++YL        +H D
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKN---CIHRD 118

Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT-IGYT---ALDYDLGSEV 216
               N L+  +    I DF ++R   E      + S+G+++  I +T   AL+Y      
Sbjct: 119 LAARNCLVGENNVLKISDFGMSR---EEEGGIYTVSDGLKQIPIKWTAPEALNY---GRY 172

Query: 217 STNGDAYNYGILLLEMVT 234
           ++  D ++YGILL E  +
Sbjct: 173 TSESDVWSYGILLWETFS 190

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 80/224 (35%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNICHRNLV 132
              + ++G GS   VY+        + A+K + +       K  + E K L++     +V
Sbjct: 3   LERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVV 62

Query: 133 RF---------ISI----------------------------AIDVASALDYLH--HHCQ 153
           +          ISI                            A  +   LDYLH   H  
Sbjct: 63  KCYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRH-- 120

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             I+H D KPSN+L+++     I DF                  G+ + +    LD    
Sbjct: 121 --IIHRDIKPSNLLINSKGEVKIADF------------------GISKVLE-NTLDQCN- 158

Query: 214 SEVST---------NGDAYNY-------GILLLEMVTRRKPIDF 241
           + V T          G++Y+Y       G+ LLE    + P   
Sbjct: 159 TFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLP 202

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 62/213 (29%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHRNLVRFISI 137
           IG G++  VY+    L   +VA+K   L  + +G   + + E   LK + H N+VR + +
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDV 66

Query: 138 AID------VASALD----------------------YLHHHCQEL-------ILHCDPK 162
                    V   LD                      YL+   Q +       +LH D K
Sbjct: 67  VHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLK 126

Query: 163 PSNVLLDNDLFAHIGDFELAR--------FRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
           P N+L+D +    + DF LAR        +  EV             T+ Y A +  LGS
Sbjct: 127 PQNLLIDREGALKLADFGLARAFGVPVRTYTHEVV------------TLWYRAPEILLGS 174

Query: 215 -EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            + ST  D ++ G +  EMV RR     +F GD
Sbjct: 175 RQYSTPVDIWSIGCIFAEMVNRRP----LFPGD 203

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 76  LINLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQCQGASKS-FMAECKALKNICHRNL 131
           L   IG G F  VYQGV+      +  VA+K        + +  F+ E   ++   H ++
Sbjct: 10  LGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHI 69

Query: 132 VRFISIAID 140
           V+ I +  +
Sbjct: 70  VKLIGVITE 78

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 44/162 (27%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKAL-KNICHR 129
           F    +IG GSF  V            AIK+L    +  +   K    E + L +   H 
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHP 62

Query: 130 NLVRFIS-------------------------------------IAIDVASALDYLHHHC 152
            +++                                         A ++  AL+YLH   
Sbjct: 63  GIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLH--- 119

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
            + I+H D KP N+LLD D+   I DF  A+     S+P  +
Sbjct: 120 SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESN 161

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 11/120 (9%)

Query: 115 SFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA 174
           +F         +  + L+ F +   DVA  +DYL    Q+  +H D    N+L+  +  A
Sbjct: 98  AFAIANSTASTLSSQQLLHFAA---DVARGMDYLS---QKQFIHRDLAARNILVGENYVA 151

Query: 175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
            I DF L+R ++     T       R  + + A++    S  +TN D ++YG+LL E+V+
Sbjct: 152 KIADFGLSRGQEVYVKKTMG-----RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 206

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 45/156 (28%), Positives = 57/156 (36%), Gaps = 48/156 (30%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKAL-KNICHRNLV--- 132
           IG GSF  V       +    A+KVL    I  +   K  MAE   L KN+ H  LV   
Sbjct: 3   IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLH 62

Query: 133 ------------------------------------RFISIAIDVASALDYLHHHCQELI 156
                                               RF   A ++ASAL YLH      I
Sbjct: 63  YSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFY--AAEIASALGYLH---SLNI 117

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           ++ D KP N+LLD+     + DF L +   E S  T
Sbjct: 118 IYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTT 153

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 60/221 (27%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSI----------QCQGASKSFMAECKALKNICH 128
           LIG G++  VY  +      ++A+K + +          + +   K+  +E + LK++ H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 129 RNLVRF---------ISIAID----------------------------VASALDYLHHH 151
            N+V++         +SI ++                            V   L YLH  
Sbjct: 68  LNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLH-- 125

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD-- 209
             + ILH D K  N+L+D D    I DF +++   ++ +     +  ++ ++ + A +  
Sbjct: 126 -SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYD--NDQNMSMQGSVFWMAPEVI 182

Query: 210 YDLGSEVSTNGDAYNYGILLLEMVTRRKP------IDFMFE 244
           +      S   D ++ G ++LEM   R+P      I  MF+
Sbjct: 183 HSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFK 223

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 50/198 (25%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVRF--- 134
           IG G F  V+ G + L +  VAIK +    +GA   + F+ E + +  + H  LV+    
Sbjct: 12  IGSGQFGLVWLGYW-LEKRKVAIKTIR---EGAMSEEDFIEEAQVMMKLSHPKLVQLYGV 67

Query: 135 -----------------------------------ISIAIDVASALDYLHHHCQELILHC 159
                                              + + +DV   + YL       ++H 
Sbjct: 68  CTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSN---VIHR 124

Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN 219
           D    N L+  +    + DF + RF   V +   +SS G +  + +++ +    S+ S+ 
Sbjct: 125 DLAARNCLVGENQVVKVSDFGMTRF---VLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSK 181

Query: 220 GDAYNYGILLLEMVTRRK 237
            D +++G+L+ E+ +  K
Sbjct: 182 SDVWSFGVLMWEVFSEGK 199

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 40/190 (21%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           +G G F  V+   ++     VA+K +         +F+AE   +K + H  LV+      
Sbjct: 14  LGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVE-AFLAEANVMKTLQHDKLVKLHAVVT 71

Query: 135 ------ISIAIDVASALDYL------HHHCQELI------------------LHCDPKPS 164
                 I+  +   S LD+L           +LI                  +H D + +
Sbjct: 72  KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAA 131

Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+   L   I DF LAR    + +   ++  G +  I +TA +       +   D ++
Sbjct: 132 NILVSASLVCKIADFGLARV---IEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWS 188

Query: 225 YGILLLEMVT 234
           +GILL+E+VT
Sbjct: 189 FGILLMEIVT 198

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 50/223 (22%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIK---VLSIQCQGASKSFMAECKALKNICHRN 130
           F +   IG G F  VY+    L+   VA+K   +  +    A    + E   LK + H N
Sbjct: 4   FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 63

Query: 131 LVRF---------ISIAIDVASALDY-----------------------------LHHHC 152
           ++++         ++I +++A A D                              L H  
Sbjct: 64  VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH 123

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              ++H D KP+NV +       +GD  L RF    S+ T ++++ +  T  Y + +   
Sbjct: 124 SRRVMHRDIKPANVFITATGVVKLGDLGLGRF---FSSKT-TAAHSLVGTPYYMSPERIH 179

Query: 213 GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-LNLHNFAR 254
            +  +   D ++ G LL EM   + P    F GD +NL++  +
Sbjct: 180 ENGYNFKSDIWSLGCLLYEMAALQSP----FYGDKMNLYSLCK 218

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 51/202 (25%)

Query: 77  INLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQGASKSFMA---ECKALKNICHR 129
           + L+G G F  V++G++    D  +  VAIK   IQ +   ++F        A+ ++ H 
Sbjct: 12  LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKT--IQDRSGRQTFQEITDHMLAMGSLDHA 69

Query: 130 NLVRFISI-------------------------------------AIDVASALDYLHHHC 152
            +VR + I                                      + +A  + YL  H 
Sbjct: 70  YIVRLLGICPGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHR 129

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              ++H +    N+LL +D    I DF +A       +  +   +  +  I + AL+  L
Sbjct: 130 ---MVHRNLAARNILLKSDSIVQIADFGVADLLY--PDDKKYFYSEHKTPIKWMALESIL 184

Query: 213 GSEVSTNGDAYNYGILLLEMVT 234
               +   D ++YG+ + EM++
Sbjct: 185 FGRYTHQSDVWSYGVTVWEMMS 206

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 66/209 (31%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK----------SFMAECK-- 121
           F L+  IG GSF  VY+ +      VVAIKV+ ++    ++           F+++C+  
Sbjct: 3   FTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLE---EAEDEIEDIQQEIQFLSQCRSP 59

Query: 122 --------ALKNI-------------CHRNLVRFI-----SIAI---DVASALDYLHHHC 152
                    LK               C  +L++        IA    +V   L+YLH   
Sbjct: 60  YITKYYGSFLKGSKLWIIMEYCGGGSC-LDLLKPGKLDETYIAFILREVLLGLEYLH--- 115

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
           +E  +H D K +N+LL  +     GD +LA F   VS   Q +S   +R   +    + +
Sbjct: 116 EEGKIHRDIKAANILLSEE-----GDVKLADF--GVS--GQLTSTMSKRNT-FVGTPFWM 165

Query: 213 GSEVSTNGDAYNY-------GILLLEMVT 234
             EV      Y+        GI  +E+  
Sbjct: 166 APEVIKQS-GYDEKADIWSLGITAIELAK 193

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 52/234 (22%), Positives = 85/234 (36%), Gaps = 65/234 (27%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAEC----KALKNICHR 129
           F ++N IG GSF  V++ V   ++ V A+K + +     ++    E     + L  +   
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLS--KMNRREREEAIDEARVLAKLDSS 59

Query: 130 NLVRF---------ISIAIDVAS------------------------------ALDYLHH 150
            ++R+         ++I ++ A                                L +LH 
Sbjct: 60  YIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH- 118

Query: 151 HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
              + ILH D K  N+ LD      IGD  +A+          S +     TI  T   Y
Sbjct: 119 --SKKILHRDIKSLNLFLDAYDNVKIGDLGVAK--------LLSDNTNFANTIVGTP--Y 166

Query: 211 DLGSEV------STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP 258
            L  E+      +   D +  G++L E  T + P D   +G L L    R  FP
Sbjct: 167 YLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGALIL-KIIRGVFP 219

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
           S + +LH +    ILH D K SN+LL+N     I DF LAR
Sbjct: 117 SGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAR 154

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 114 KSFMAECKALKNICHRNL--VRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND 171
           K F+ +C+  +    + L   + + +AI +A  + YLH      ++H D    N ++D +
Sbjct: 97  KLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEE 153

Query: 172 LFAHIGDFELAR--FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILL 229
           L   I D  L+R  F            +   R + + AL+  +  E S+  D +++G+LL
Sbjct: 154 LQVKITDNALSRDLF----PMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLL 209

Query: 230 LEMVT 234
            E++T
Sbjct: 210 WELMT 214

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R  +I + +  AL YLH   ++ I+H D  P+N++L  D    I DF LA+ +Q  S  T
Sbjct: 114 RIWNIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLT 171

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
                 V  TI Y+  +           D + +G +L +M T + P
Sbjct: 172 S-----VVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPP 212

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF----RQEVSNPTQSSSNGV 199
           AL+YLH +    I+H D KP N+L+D++    + DF L++     RQ   N  +     +
Sbjct: 105 ALEYLHSNG---IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRI 161

Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
             T  Y A +  LG   S   D ++ G +L E + 
Sbjct: 162 VGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLV 196

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 49/154 (31%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIK-------VLSIQCQGASKSFMAECKALKNI 126
           +  I  IG G++  V   +   +   VAIK       V ++     +K  + E K L++ 
Sbjct: 7   YKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTL-----AKRTLRELKILRHF 61

Query: 127 CHRNLVRFISI-------AIDVASALDY----LHH--HCQEL------------------ 155
            H N++    I         DV   +D     LHH  H  +                   
Sbjct: 62  KHDNIIAIRDILRPPGADFKDVYVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLK 121

Query: 156 ------ILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                 ++H D KPSN+L++ D    IGDF +AR
Sbjct: 122 YIHSANVIHRDLKPSNLLVNEDCELRIGDFGMAR 155

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 50/212 (23%), Positives = 91/212 (42%), Gaps = 59/212 (27%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS---------KSFMAECKALKNICHR 129
           LIG GSF +VY G+   +  ++A+K + +    AS          +   E   LK + H 
Sbjct: 7   LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66

Query: 130 NLVRFISIAID---------------VASALD----------------------YLHHHC 152
           N+V+++  ++D               VA+ L+                      YLH   
Sbjct: 67  NIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLH--- 123

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              I+H D K +N+L+DN     I DF +++  +  +N   + +NG R ++  +   + +
Sbjct: 124 NRGIIHRDIKGANILVDNKGGIKISDFGISKKLE--ANSLSTKTNGARPSLQGSV--FWM 179

Query: 213 GSEV------STNGDAYNYGILLLEMVTRRKP 238
             EV      +   D ++ G L++EM+T + P
Sbjct: 180 APEVVKQTSYTRKADIWSLGCLVVEMLTGKHP 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 21/114 (18%)

Query: 138 AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN 197
           A ++   L +LH      I++ D K  NVLLD++    I DF + +         +    
Sbjct: 102 AAEIVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCK---------EGILG 149

Query: 198 GVRR-----TIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           GV       T  Y A +           D +  G+LL EM+  + P    FEGD
Sbjct: 150 GVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSP----FEGD 199

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 36/140 (25%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRFISI 137
           IG G+   V++         VA+K ++++    G     + E KAL+   H  +V+ + +
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 138 ---------------------------AIDVASALDYLH------HHCQEL-ILHCDPKP 163
                                       +  A    Y+        +     I+H D KP
Sbjct: 68  FPHGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKP 127

Query: 164 SNVLLDNDLFAHIGDFELAR 183
           +N+L+  D    I DF LAR
Sbjct: 128 ANLLISADGVLKIADFGLAR 147

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 127 CHR-NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR 185
           CH+ +L R    A ++   L +LH    + I++ D K  N+LLD D    I DF + +  
Sbjct: 90  CHKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCK-- 144

Query: 186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
              +    + +     T  Y A +  LG + +T+ D +++G+LL EM+  + P
Sbjct: 145 --ENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 15/153 (9%)

Query: 89  YQGVFDLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNIC-HRNLVRFISIAIDVASALD 146
           Y G F L+ +  +I +    C+G S  S   + K        + L +   IA  V   L 
Sbjct: 64  YYGAF-LDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGK---IAESVLKGLS 119

Query: 147 YLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
           YLH      I+H D KPSN+LL       + DF ++    E+ N    +  G   T  Y 
Sbjct: 120 YLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVS---GELVNSLAGTFTG---TSFYM 170

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           A +   G   S   D ++ G+ LLE+   R P 
Sbjct: 171 APERIQGKPYSITSDVWSLGLTLLEVAQNRFPF 203

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 138 AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN 197
           A ++  AL++LH   +  I++ D K  NVLLD D    + D+ + +   E   P  ++S 
Sbjct: 102 AAEICIALNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCK---EGLGPGDTTST 155

Query: 198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG-DLNLHNFARMA 256
               T  Y A +   G E   + D +  G+L+ EM+  R P D + +  D+N  ++    
Sbjct: 156 FCG-TPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQV 214

Query: 257 FPNRVMDIVNLVLLNDNKVLAG 278
              + + I   + +  + VL G
Sbjct: 215 ILEKPIRIPRFLSVKASHVLKG 236

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 62/200 (31%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA-----SKSFMAECKALKNICHRNLVRF 134
           IG G+F  V+ G    +   VA+K     C+          F+ E + LK   H N+VR 
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVK----SCRETLPPDLKAKFLQEARILKQYSHPNIVRL 58

Query: 135 ISIAI--------------------------------------DVASALDYLH-HHCQEL 155
           I +                                        + A+ ++YL   HC   
Sbjct: 59  IGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHC--- 115

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT-IGYT---ALDYD 211
            +H D    N L+       I DF ++R   E  +   +S+ G+++  + +T   AL+Y 
Sbjct: 116 -IHRDLAARNCLVTEKNVLKISDFGMSR---EEEDGVYASTGGMKQIPVKWTAPEALNY- 170

Query: 212 LGSEVSTNGDAYNYGILLLE 231
                S+  D +++GILL E
Sbjct: 171 --GRYSSESDVWSFGILLWE 188

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 41/164 (25%), Positives = 57/164 (34%), Gaps = 58/164 (35%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           P+E YE          LI  IG G++  VY+        +VAIKV+ ++     +    E
Sbjct: 1   PQEDYE----------LIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQE 50

Query: 120 CKALKNICHRNLVRFI-------------------SIAIDVASA---------------- 144
              LK   H N+V +                    S+  D+                   
Sbjct: 51  ISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQ-DIYQVTRGPLSELQIAYVCRE 109

Query: 145 ----LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF 184
               L YLH      I H D K +N+LL  D     GD +LA F
Sbjct: 110 TLKGLAYLHE--TGKI-HRDIKGANILLTED-----GDVKLADF 145

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 62/218 (28%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIK---VLSIQCQGASKSFMAECKALKNICHRNLVRFI- 135
           IG G F  VY+    L+R  VA+K   +  +    A +  + E   LK + H N+++++ 
Sbjct: 10  IGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLD 69

Query: 136 --------SIAIDVASALDY-----------------------------LHHHCQELILH 158
                   +I +++A A D                              + H     ++H
Sbjct: 70  SFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMH 129

Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE-VS 217
            D KP+NV +       +GD  L RF    S+ T ++ + V          Y +  E + 
Sbjct: 130 RDIKPANVFITATGVVKLGDLGLGRF---FSSKTTAAHSLV-------GTPYYMSPERIH 179

Query: 218 TNG-----DAYNYGILLLEMVTRRKPIDFMFEGD-LNL 249
            NG     D ++ G LL EM   + P    F GD +NL
Sbjct: 180 ENGYNFKSDIWSLGCLLYEMAALQSP----FYGDKMNL 213

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 6/52 (11%)

Query: 132 VRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
           V++IS   +VA ALDYLH H    I+H D KP N+L+ N+    + DF L++
Sbjct: 107 VKYIS---EVALALDYLHRHG---IIHRDLKPDNMLISNEGHIKLTDFGLSK 152

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 70  ATDGFPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQGASKS-FMAECKAL 123
             D   L+  +G G+F  VY+G++     D     VA+K L   C    +S F+ E   +
Sbjct: 4   PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIM 63

Query: 124 KNICHRNLVRFISIAID 140
               H+N+VR I ++ +
Sbjct: 64  SKFNHQNIVRLIGVSFE 80

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 62/217 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN 130
            D + +I  +G G+F  VY+          A K++ I+ +   + FM E   L    H N
Sbjct: 4   NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPN 63

Query: 131 LVRFISI-----------------AID---------------------VASALDYLHHHC 152
           +V                      A+D                     +  AL++LH H 
Sbjct: 64  IVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH- 122

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              ++H D K  N+LL  D     GD +LA F   VS   +S+       IG     Y +
Sbjct: 123 --KVIHRDLKAGNILLTLD-----GDVKLADF--GVSAKNKSTLQKRDTFIGTP---YWM 170

Query: 213 GSEV----STNGDAYNY-------GILLLEMVTRRKP 238
             EV    +   + Y+Y       GI L+E+     P
Sbjct: 171 APEVVACETFKDNPYDYKADIWSLGITLIELAQMEPP 207

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 9/128 (7%)

Query: 137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS 196
           IAI +A AL +LH  C   ++  +  P  +++D     H+          +      S+ 
Sbjct: 785 IAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLCTDTKCFISSA- 843

Query: 197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA 256
                   Y A +     +++   D Y +G++L+E++T + P D  F    ++  +AR  
Sbjct: 844 --------YVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYC 895

Query: 257 FPNRVMDI 264
           + +  +D+
Sbjct: 896 YSDCHLDM 903

Length = 968

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 139 IDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
             + SA+ Y+H   +  ILH D K  N+ L       +GDF +++    +     S +  
Sbjct: 108 FQIVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISK----ILGSEYSMAET 160

Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID 240
           V  T  Y + +   G + +   D +  G +L E++T ++  D
Sbjct: 161 VVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFD 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 41/197 (20%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRFISI 137
           IG G++  V++        +VA+K + +    +G   S + E   LK + H+N+VR   +
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDV 67

Query: 138 ---------------------------AIDVASALDYLHH------HC-QELILHCDPKP 163
                                       ID      ++         C    +LH D KP
Sbjct: 68  LHSDKKLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKP 127

Query: 164 SNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-STNGDA 222
            N+L++ +    + DF LAR       P +  S  V  T+ Y   D   G+++ ST+ D 
Sbjct: 128 QNLLINKNGELKLADFGLAR---AFGIPVRCYSAEV-VTLWYRPPDVLFGAKLYSTSIDM 183

Query: 223 YNYGILLLEMVTRRKPI 239
           ++ G +  E+    +P+
Sbjct: 184 WSAGCIFAELANAGRPL 200

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 56/197 (28%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK-SFMAECKALKNICHRNLVRFISI 137
           L+G G+F  V++G    ++  VA+K          K  F++E + LK   H N+V+ I +
Sbjct: 2   LLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGV 60

Query: 138 --------------------------------------AIDVASALDYLH-HHCQELILH 158
                                                 A+D A+ + YL   +C    +H
Sbjct: 61  CTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNC----IH 116

Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT-IGYTA---LDYDLGS 214
            D    N L+  +    I DF ++R  QE  +    SS+G+++  I +TA   L+Y    
Sbjct: 117 RDLAARNCLVGENNVLKISDFGMSR--QE--DDGIYSSSGLKQIPIKWTAPEALNY---G 169

Query: 215 EVSTNGDAYNYGILLLE 231
             S+  D ++YGILL E
Sbjct: 170 RYSSESDVWSYGILLWE 186

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 10/104 (9%)

Query: 137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP-TQSS 195
           I+I V   L YL    +  I+H D KPSN+L+++      G+ +L  F   VS     S 
Sbjct: 104 ISIAVLRGLTYLREKHK--IMHRDVKPSNILVNSR-----GEIKLCDF--GVSGQLIDSM 154

Query: 196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           +N    T  Y + +   G+  +   D ++ G+ L+EM   R PI
Sbjct: 155 ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPI 198

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           RF S  I +A  L+YLH   +  I++ D K  NVLLD++    + D+ + +   E   P 
Sbjct: 99  RFYSAEISLA--LNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK---EGLRPG 150

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            ++S     T  Y A +   G +   + D +  G+L+ EM+  R P D +   D
Sbjct: 151 DTTSTFCG-TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSD 203

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS 196
           ++I V   L YL    Q  I+H D KPSN+L+++     + DF ++           S +
Sbjct: 108 VSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKLCDFGVS------GQLIDSMA 159

Query: 197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           N    T  Y + +   G+  S   D ++ G+ L+E+   R PI
Sbjct: 160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPI 202

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 34/173 (19%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
           DG PLI +     F+ +  G  DLN+ + A         G     + + +  +      L
Sbjct: 78  DGDPLIMV-----FEYMKHG--DLNKFLRA--------HGPDAMILVDGQPRQAKGELGL 122

Query: 132 VRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP 191
            + + IA  +AS + YL     +  +H D    N L+  +L   IGDF ++R        
Sbjct: 123 SQMLHIASQIASGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGMSR-------- 171

Query: 192 TQSSSNGVRRTIGYTAL-------DYDLGSEVSTNGDAYNYGILLLEMVTRRK 237
               S    R  G+T L       +  +  + +T  D +++G++L E+ T  K
Sbjct: 172 -DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGK 223

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 151 HCQEL-ILHCDPKPSNVLLDNDL-FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL 208
           HC +  ++H D KP N+L+D       I D  L R     S P +S ++ +  T+ Y A 
Sbjct: 125 HCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGR---AFSIPVKSYTHEI-VTLWYRAP 180

Query: 209 DYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN----LHNFARMAFPN 259
           +  LGS   ST  D ++ G +  EM  R++P   +F GD      LH F  +  P 
Sbjct: 181 EVLLGSTHYSTPVDIWSVGCIFAEMS-RKQP---LFPGDSELQQLLHIFKLLGTPT 232

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 49/228 (21%), Positives = 80/228 (35%), Gaps = 72/228 (31%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           P+E++E          +I  +G G+F  VY+        + A KV+  + +   + +M E
Sbjct: 3   PEEFWE----------IIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVE 52

Query: 120 CKALKNICHRNLVRFISI-----------------AIDVA-------------------- 142
              L +  H N+V+ +                   A+D                      
Sbjct: 53  IDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQT 112

Query: 143 -SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRR 201
             AL+YLH   +  I+H D K  N+L   D     GD +LA F     N     +  ++R
Sbjct: 113 LEALNYLH---ENKIIHRDLKAGNILFTLD-----GDIKLADFGVSAKN-----TRTIQR 159

Query: 202 TIGYTALDYDLGSEV-----------STNGDAYNYGILLLEMVTRRKP 238
              +    Y +  EV               D ++ GI L+EM     P
Sbjct: 160 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPP 207

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R I  A ++   L+ L    +E I++ D KP N+LLD+     I D  LA     V  P 
Sbjct: 103 RAIFYAAELCCGLEDLQ---RERIVYRDLKPENILLDDRGHIRISDLGLA-----VQIPE 154

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
             +  G   T+GY A +     + + + D +  G L+ EM+  + P
Sbjct: 155 GETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSP 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS 196
           ++I V   L YL    +  I+H D KPSN+L+++     + DF ++           S +
Sbjct: 108 VSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVS------GQLIDSMA 159

Query: 197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           N    T  Y + +   G+  S   D ++ G+ L+EM   R PI
Sbjct: 160 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPI 202

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 136 SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF 184
            IA  +A  L  LH     ++ H D  P N+L+D+     I D+E A +
Sbjct: 90  DIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY 138

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 48/219 (21%), Positives = 78/219 (35%), Gaps = 62/219 (28%)

Query: 73  GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHRN 130
            F ++  +G GS+ +VY+     +    A+K   L    Q   +  + E + L ++ H N
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 131 LVRF-----------------------------------------ISIAIDVASALDYLH 149
           ++ +                                           I I +   L  LH
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120

Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG---YT 206
              ++ ILH D K +N+LL  +    IGD  +++  ++    TQ         IG   Y 
Sbjct: 121 ---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQ---------IGTPHYM 168

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG 245
           A +   G   S   D ++ G LL EM T   P    FE 
Sbjct: 169 APEVWKGRPYSYKSDIWSLGCLLYEMATFAPP----FEA 203

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 16/100 (16%)

Query: 148 LHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
           +HH H + +I H D K +N+LL ++    +GDF    F +  +    + S+ V RT  + 
Sbjct: 156 VHHVHSKHMI-HRDIKSANILLCSNGLVKLGDFG---FSKMYAA---TVSDDVGRT--FC 206

Query: 207 ALDYDLGSEV------STNGDAYNYGILLLEMVTRRKPID 240
              Y +  E+      S   D ++ G+LL E++T ++P D
Sbjct: 207 GTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFD 246

Length = 496

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
           ++YLH +   +I+H D K +N+L D+     +GDF  ++  Q +     SS  G++   G
Sbjct: 117 VEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC----SSGTGMKSVTG 169

Query: 205 ---YTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
              + + +   G       D ++ G  ++EM+T + P
Sbjct: 170 TPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPP 206

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R +  A ++   L+ LH   +E I++ D KP N+LLD+     I D  LA     V  P 
Sbjct: 103 RAVFYAAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLA-----VEIPE 154

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
             +  G   T+GY A +       + + D +  G L+ EM+  + P
Sbjct: 155 GETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSP 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++A ALD+LH      I++ D KP N+LLD +    + DF L++   +      S     
Sbjct: 106 ELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCG-- 160

Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG 245
             T+ Y A +       + + D +++G+L+ EM+T   P    F+G
Sbjct: 161 --TVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLP----FQG 200

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.98
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.98
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.98
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.98
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.98
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.98
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.98
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.98
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.98
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.98
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.97
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.97
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.97
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.97
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.97
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.96
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.96
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.96
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.96
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.96
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.96
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.96
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.95
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.95
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.95
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.95
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.95
KOG1152	772	consensus Signal transduction serine/threonine kin	99.94
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.94
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.93
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.93
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.93
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.93
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
PRK09188	365	serine/threonine protein kinase; Provisional	99.87
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.87
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.85
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.84
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.84
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.83
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.82
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.82
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.81
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.77
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.73
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.72
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.72
PRK12274	218	serine/threonine protein kinase; Provisional	99.7
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.68
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.67
PRK10345	210	hypothetical protein; Provisional	99.62
smart00090	237	RIO RIO-like kinase.	99.57
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.57
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.49
PRK14879	211	serine/threonine protein kinase; Provisional	99.49
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.48
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.46
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.46
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.34
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.29
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.21
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.21
KOG1243	690	consensus Protein kinase [General function predict	99.15
COG4248	637	Uncharacterized protein with protein kinase and he	99.05
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.04
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.0
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.93
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.84
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.84
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.79
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.78
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.46
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.42
KOG3087	229	consensus Serine/threonine protein kinase [General	98.33
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.23
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.15
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.0
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.9
PRK09902	216	hypothetical protein; Provisional	97.88
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.61
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.58
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.51
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.49
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.44
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.24
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	97.07
PF01636	239	APH: Phosphotransferase enzyme family This family	96.99
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	96.97
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.68
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	96.54
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.4
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.06
KOG2268	465	consensus Serine/threonine protein kinase [Signal	95.79
KOG1235	538	consensus Predicted unusual protein kinase [Genera	95.74
PLN02236	344	choline kinase	95.64
PRK09550	401	mtnK methylthioribose kinase; Reviewed	95.58
PRK05231	319	homoserine kinase; Provisional	95.54
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.51
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	95.17
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	95.17
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	94.7
PRK12396	409	5-methylribose kinase; Reviewed	94.5
PLN02876	822	acyl-CoA dehydrogenase	94.09
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	93.5
KOG2270	520	consensus Serine/threonine protein kinase involved	93.44
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	93.41
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	93.17
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	92.99
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	92.68
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	92.53
PRK10271	188	thiK thiamine kinase; Provisional	92.22
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	91.98
PHA03111	444	Ser/Thr kinase; Provisional	91.74
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	91.49
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	91.14
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	90.65
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	90.23
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	89.84
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	89.24
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	89.19
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	88.89
KOG1093	725	consensus Predicted protein kinase (contains TBC a	88.77
COG2334	331	Putative homoserine kinase type II (protein kinase	88.71
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	86.7
PTZ00296	442	choline kinase; Provisional	86.4
KOG1236	565	consensus Predicted unusual protein kinase [Genera	86.13

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-45  Score=343.30  Aligned_cols=250  Identities=32%  Similarity=0.536  Sum_probs=211.4

Q ss_pred             cCChhhHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---
Q 039228           58 AIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---  134 (356)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---  134 (356)
                      ....|++.++..+|++|.-.+.||+|+||.||+|....+ ..||||.+........++|.+|+.++.+++|||+|++   
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~-~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDG-TVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCC-CEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEE
Confidence            567799999999999999999999999999999999866 8999998875433214569999999999999999987   


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEc
Q 039228          135 -------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIG  177 (356)
Q Consensus       135 -------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~  177 (356)
                                                           +.|+.++|.||+|||+.+.++||||||||+|||||+++++||+
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKls  219 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLS  219 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEcc
Confidence                                                 4799999999999999988899999999999999999999999


Q ss_pred             cccccccccc-CCCCCccCCCCc-cccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccc-cCCccHHHHHH
Q 039228          178 DFELARFRQE-VSNPTQSSSNGV-RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF-EGDLNLHNFAR  254 (356)
Q Consensus       178 Dfg~a~~~~~-~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~-~~~~~~~~~~~  254 (356)
                      |||+|+.... ...     .... .||.+|++||+...+..+.++|||||||+++|++||+.|.+... .+...+..|+.
T Consensus       220 DFGLa~~~~~~~~~-----~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~  294 (361)
T KOG1187|consen  220 DFGLAKLGPEGDTS-----VSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAK  294 (361)
T ss_pred             CccCcccCCccccc-----eeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHH
Confidence            9999975443 111     1111 78999999999999999999999999999999999999987544 33455888887


Q ss_pred             HhCC-CchHHHhhhhhc-cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          255 MAFP-NRVMDIVNLVLL-NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       255 ~~~~-~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ..+. ..+.+++|+.+. ..+..                 ..+...+..++.+|++.+|.+||+|.+|+++|+.+...
T Consensus       295 ~~~~~~~~~eiiD~~l~~~~~~~-----------------~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  295 PLLEEGKLREIVDPRLKEGEYPD-----------------EKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHCcchhheeCCCccCCCCCh-----------------HHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            7664 478899999886 33321                 15777899999999999999999999999999666544

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.1e-43  Score=308.91  Aligned_cols=239  Identities=18%  Similarity=0.192  Sum_probs=178.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      +.|+.+.++|+|+||.||+++++.||+.||||++-...  ....+-.++|+++|++|+|+|+|.+               
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            35888899999999999999999999999999996443  2334567899999999999999998               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.|+.|+|+++   +|||||||+||||+.+|.+||+|||+|+.+...+   
T Consensus        82 ~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n---~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pg---  155 (396)
T KOG0593|consen   82 YCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNN---CIHRDIKPENILITQNGVVKLCDFGFARTLSAPG---  155 (396)
T ss_pred             ecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcC---eecccCChhheEEecCCcEEeccchhhHhhcCCc---
Confidence                                  347889999999999999   9999999999999999999999999999876432   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCcc-HHHHHHHhCCCchHHHhhh--h
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN-LHNFARMAFPNRVMDIVNL--V  268 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~  268 (356)
                       ...+..+.|.+|+|||.+.+ -.|+..+||||+||++.||++|.+-|.+.++-+.- .....-..+..+..++...  .
T Consensus       156 -d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~  234 (396)
T KOG0593|consen  156 -DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPF  234 (396)
T ss_pred             -chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCc
Confidence             23345788999999999988 67999999999999999999999999864432211 1111111122233333221  1


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +.+-.-......+     ......+.....+++++..||+.||++|++-++++.
T Consensus       235 F~Gv~lP~~~~~e-----pLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  235 FHGVRLPEPEHPE-----PLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             eeeeecCCCCCcc-----chhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence            1111000000011     111122345557889999999999999999999975

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.1e-44  Score=307.62  Aligned_cols=221  Identities=24%  Similarity=0.304  Sum_probs=177.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..+|+++++||+|.||+||++....++..||.|.++..  +....+.+..|+.+|++|+|||||++              
T Consensus        18 l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlni   97 (375)
T KOG0591|consen   18 LADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNI   97 (375)
T ss_pred             HHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHH
Confidence            34699999999999999999999999999999998743  23344678899999999999999998              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCC-CcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQ-ELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~-~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                   ++++.|++.||..+|+.-. .-|+||||||.||+|+.+|.+||+|||++++
T Consensus        98 vmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~  177 (375)
T KOG0591|consen   98 VMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRF  177 (375)
T ss_pred             HHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhH
Confidence                                         5688999999999998321 1289999999999999999999999999998


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      +...    .......+||+.||+||.+.+.+|+.+|||||+||++|||..-++||.+.     ++.+......       
T Consensus       178 l~s~----~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-----n~~~L~~KI~-------  241 (375)
T KOG0591|consen  178 LSSK----TTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-----NLLSLCKKIE-------  241 (375)
T ss_pred             hcch----hHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-----cHHHHHHHHH-------
Confidence            7643    34456689999999999999999999999999999999999999999742     3333222211       


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                           .++++.              --..-....|..|+..|+..||+.||+.-.++..+..
T Consensus       242 -----qgd~~~--------------~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  242 -----QGDYPP--------------LPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             -----cCCCCC--------------CcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence                 111110              0001445577899999999999999996666555544

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-43  Score=326.63  Aligned_cols=225  Identities=28%  Similarity=0.413  Sum_probs=179.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccc--hHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~--~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..+.+.+.||+|+||+||+|.+..+ ..||||++.......  .+.|.+|+.+|.+++|||||++               
T Consensus        41 ~~l~~~~~iG~G~~g~V~~~~~~g~-~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVt  119 (362)
T KOG0192|consen   41 DELPIEEVLGSGSFGTVYKGKWRGT-DVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVT  119 (362)
T ss_pred             HHhhhhhhcccCCceeEEEEEeCCc-eeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEE
Confidence            3455666799999999999999843 339999997543222  4689999999999999999987               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEcccccccccccC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~  188 (356)
                                               +.++.||+.|+.|||+.+.  ||||||||+|||++.++ ++||+|||+++.....
T Consensus       120 Ey~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~--iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~  197 (362)
T KOG0192|consen  120 EYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGP--IIHRDLKSDNILVDLKGKTLKIADFGLSREKVIS  197 (362)
T ss_pred             EeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCC--eeecccChhhEEEcCCCCEEEECCCccceeeccc
Confidence                                     5689999999999999873  99999999999999997 9999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhc--CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDL--GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      .    .......||+.|||||++.  ...|+.++||||||+++|||+||+.||......  ....           .++.
T Consensus       198 ~----~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~--~~~~-----------~v~~  260 (362)
T KOG0192|consen  198 K----TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPV--QVAS-----------AVVV  260 (362)
T ss_pred             c----ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHH--HHHH-----------HHHh
Confidence            2    2223378899999999999  568999999999999999999999999864331  1111           1111


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                      ......                  .+..++..+..++..||+.||..||++.+++..|+.+...+...
T Consensus       261 ~~~Rp~------------------~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~~~  310 (362)
T KOG0192|consen  261 GGLRPP------------------IPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHISSA  310 (362)
T ss_pred             cCCCCC------------------CCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhhccc
Confidence            111111                  11246678899999999999999999999999999998876543

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.9e-43  Score=330.22  Aligned_cols=212  Identities=21%  Similarity=0.264  Sum_probs=176.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..|+..++||+|||+.||.+++..+|..||+|++.+.   .....+.+.+|+++.+.|+|||||++              
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4699999999999999999999999999999999753   34556789999999999999999998              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.||+.||.|||+++   |||||||-.|+|++++.++||+|||+|..+....  
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~---IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~--  172 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLG---IIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDG--  172 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcC---ceecccchhheeecCcCcEEecccceeeeecCcc--
Confidence                                   348899999999999999   9999999999999999999999999998776432  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                        ......+||+.|.|||++....++..+||||+||+||.||+|++||+..                 .+.+.++..-..
T Consensus       173 --Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk-----------------~vkety~~Ik~~  233 (592)
T KOG0575|consen  173 --ERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETK-----------------TVKETYNKIKLN  233 (592)
T ss_pred             --cccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccc-----------------hHHHHHHHHHhc
Confidence              3344589999999999999999999999999999999999999999742                 122233332222


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ++..                +........+||.++|+.||.+|||+++|+..
T Consensus       234 ~Y~~----------------P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  234 EYSM----------------PSHLSAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             Cccc----------------ccccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            2210                01223345789999999999999999999875

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=4e-43  Score=313.96  Aligned_cols=216  Identities=21%  Similarity=0.256  Sum_probs=179.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++++.++.||+|..|+||+++++.|++.+|+|.+... .....+++.+|+++++..+||+||.+                
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mE  158 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICME  158 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehh
Confidence            3577788999999999999999999999999999544 34456789999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                            -.|+.++++||.|||+ ++   ||||||||+|||++..|.+||+|||.++.+...   
T Consensus       159 YMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~---IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS---  232 (364)
T KOG0581|consen  159 YMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERK---IIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS---  232 (364)
T ss_pred             hcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccC---eeeccCCHHHeeeccCCCEEeccccccHHhhhh---
Confidence                                  2478899999999996 77   999999999999999999999999999876532   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ....++||..|||||.+.+..|+.++||||||++++|+++|+.||.......            ....++++....+
T Consensus       233 ---~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~------------~~~~~Ll~~Iv~~  297 (364)
T KOG0581|consen  233 ---IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPY------------LDIFELLCAIVDE  297 (364)
T ss_pred             ---hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCC------------CCHHHHHHHHhcC
Confidence               4567899999999999999999999999999999999999999997531111            2333444444433


Q ss_pred             ccccccccccchhhhhchhhHH-HHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRL-ECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .++.               .+. .+..++.+++..||+.||.+|||+.|+++.
T Consensus       298 ppP~---------------lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  298 PPPR---------------LPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             CCCC---------------CCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            3221               111 356678999999999999999999999864

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-43  Score=319.74  Aligned_cols=216  Identities=22%  Similarity=0.259  Sum_probs=170.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-------chHHHHHHHHHHhhcCCCChHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-------ASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-------~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      .+.|.+.+.||+|+||.|-+|..+.+++.||||++++....       ....+.+|+++|++|+|||||++         
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds  250 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDS  250 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence            35688999999999999999999999999999999754211       12235699999999999999997         


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC---CceEEccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND---LFAHIGDFELAR  183 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~---~~~kl~Dfg~a~  183 (356)
                                                  .-++.|++.|+.|||++|   |+||||||+|||+..+   ..+||+|||+|+
T Consensus       251 ~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~G---I~HRDiKPeNILl~~~~e~~llKItDFGlAK  327 (475)
T KOG0615|consen  251 SYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQG---IIHRDIKPENILLSNDAEDCLLKITDFGLAK  327 (475)
T ss_pred             eEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcC---cccccCCcceEEeccCCcceEEEecccchhh
Confidence                                        237899999999999999   9999999999999755   789999999999


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCC---CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV---STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ..+.     .......+||+.|.|||++.+..+   ..++||||+||+||-+++|.+||........-..+.        
T Consensus       328 ~~g~-----~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI--------  394 (475)
T KOG0615|consen  328 VSGE-----GSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQI--------  394 (475)
T ss_pred             cccc-----ceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHH--------
Confidence            7653     344566899999999999987653   347799999999999999999998644332111111        


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                              +.+.+..        ....|    .+..++..+||.++|..||++|||+.|++.
T Consensus       395 --------~~G~y~f--------~p~~w----~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  395 --------LKGRYAF--------GPLQW----DRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             --------hcCcccc--------cChhh----hhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence                    1111110        00111    245556789999999999999999999986

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-42  Score=305.45  Aligned_cols=164  Identities=30%  Similarity=0.392  Sum_probs=146.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|+++++||+|+||.||+++.+.+++.+|+|++++..   ....+....|..+|.+++||+||.+             
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            567999999999999999999999999999999997542   3345678899999999999999998             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              .-++.+|+.||.|||+.+   ||||||||+|||||..|+++|+|||+++..-... 
T Consensus       104 ld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~g---IiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~-  179 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKG---IIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDG-  179 (357)
T ss_pred             EeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHeeecCCCcEEEeccccchhcccCC-
Confidence                                    236778999999999999   9999999999999999999999999998543322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         .....++||+.|||||++.+..|+..+|+||||+++|||++|.+||..
T Consensus       180 ---~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~  227 (357)
T KOG0598|consen  180 ---DATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYA  227 (357)
T ss_pred             ---CccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcC
Confidence               233448999999999999999999999999999999999999999974

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-41  Score=319.92  Aligned_cols=233  Identities=27%  Similarity=0.395  Sum_probs=185.9

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------  134 (356)
                      ...+|....+.+.+...||+|.||+||+|+|-   ..||||+++...  .+..+.|.+|+..+++-+|-||+-|      
T Consensus       383 s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh---GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~  459 (678)
T KOG0193|consen  383 SLEEWEIPPEEVLLGERIGSGSFGTVYRGRWH---GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN  459 (678)
T ss_pred             cccccccCHHHhhccceeccccccceeecccc---cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence            33667777788899999999999999999996   569999998653  3456789999999999999999976      


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     ++|+.||++|+.|||.++   |||||||..||++.+++.|||+|||++.
T Consensus       460 p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~---IIHrDLKSnNIFl~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  460 PPLAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKN---IIHRDLKSNNIFLHEDLKVKIGDFGLAT  536 (678)
T ss_pred             CceeeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhh---hhhhhccccceEEccCCcEEEeccccee
Confidence                                           669999999999999999   9999999999999999999999999997


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ......  .........|...|||||++..   .+|++.+||||||+++|||+||..||.....+...+..-.....++ 
T Consensus       537 vk~~w~--g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd-  613 (678)
T KOG0193|consen  537 VKTRWS--GEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPD-  613 (678)
T ss_pred             eeeeec--cccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCcc-
Confidence            654442  2334455677889999999863   5799999999999999999999999972221211111000000010 


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                              +                   .....+|++++.+|+..||..++++||.+.+|+.+|+.+..++
T Consensus       614 --------~-------------------s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~  657 (678)
T KOG0193|consen  614 --------L-------------------SKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSL  657 (678)
T ss_pred             --------c-------------------hhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhcc
Confidence                    0                   0112378889999999999999999999999999999887764

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6e-41  Score=309.31  Aligned_cols=241  Identities=23%  Similarity=0.292  Sum_probs=179.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .+.|+.++.||+|.||.||+|++..+|+.||+|.+....  .+...-..+||.+|++|+||||+++              
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            356889999999999999999999999999999997654  4556778899999999999999998              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|+|++|   |+|||||.+|||||++|.+||+|||+|++.....
T Consensus       196 VFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~g---vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~  272 (560)
T KOG0600|consen  196 VFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRG---VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSG  272 (560)
T ss_pred             EEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcC---eeeccccccceEEcCCCCEEeccccceeeccCCC
Confidence                                     348899999999999999   9999999999999999999999999999776544


Q ss_pred             CCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-C-CchHHHhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-P-NRVMDIVN  266 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~-~~~~~~~~  266 (356)
                      .   ...+..+-|++|.|||.+.|. .|+.+.|+||.||||.||++|++.|.+..+-. .+.......- | +..+...+
T Consensus       273 ~---~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEve-Ql~kIfklcGSP~e~~W~~~k  348 (560)
T KOG0600|consen  273 S---APYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVE-QLHKIFKLCGSPTEDYWPVSK  348 (560)
T ss_pred             C---cccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHH-HHHHHHHHhCCCChhcccccc
Confidence            2   224456779999999999875 69999999999999999999999997643321 2222222221 1 11111111


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      -.....+. ........+.+..    ...+...++|+..+|..||.+|.|+.+++..
T Consensus       349 LP~~~~~k-p~~~y~r~l~E~~----~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~s  400 (560)
T KOG0600|consen  349 LPHATIFK-PQQPYKRRLRETF----KDFPASALDLLEKLLSLDPDKRGTASSALQS  400 (560)
T ss_pred             CCcccccC-CCCcccchHHHHh----ccCCHHHHHHHHHHhccCccccccHHHHhcC
Confidence            00000000 0011111222221    1233456789999999999999999988753

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-41  Score=313.12  Aligned_cols=243  Identities=22%  Similarity=0.288  Sum_probs=187.7

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhc-CCCChHHH---------
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNI-CHRNLVRF---------  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l---------  134 (356)
                      .+...+|..++.||.|+|++|++|+.+.+++.||||++.+.   .....+.+..|-.+|.+| .||.|++|         
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            55678999999999999999999999999999999999643   233345677899999999 79999997         


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.+|+.||+|||++|   ||||||||+|||||.+|+++|+|||.|+.+.
T Consensus       149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~G---IIHRDlKPENILLd~dmhikITDFGsAK~l~  225 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNG---IIHRDLKPENILLDKDGHIKITDFGSAKILS  225 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeEcCCCcEEEeeccccccCC
Confidence                                        237889999999999999   9999999999999999999999999999875


Q ss_pred             cCCCC---------CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC
Q 039228          187 EVSNP---------TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF  257 (356)
Q Consensus       187 ~~~~~---------~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~  257 (356)
                      .....         .......++||..|.+||++.....++.+|+|+|||++|+|+.|.+||....+ ...++....   
T Consensus       226 ~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ne-yliFqkI~~---  301 (604)
T KOG0592|consen  226 PSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANE-YLIFQKIQA---  301 (604)
T ss_pred             hhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccH-HHHHHHHHH---
Confidence            43322         11122569999999999999999999999999999999999999999974321 111111111   


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcccccc
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVF  337 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~  337 (356)
                             ++-.+.+                      ..++...+|+.+.|..||.+|+|+.+|-+.      -+.....|
T Consensus       302 -------l~y~fp~----------------------~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H------pFF~~Vdw  346 (604)
T KOG0592|consen  302 -------LDYEFPE----------------------GFPEDARDLIKKLLVRDPSDRLTSQQIKAH------PFFEGVDW  346 (604)
T ss_pred             -------hcccCCC----------------------CCCHHHHHHHHHHHccCccccccHHHHhhC------cccccCCh
Confidence                   1111111                      222356789999999999999999655432      23444556


Q ss_pred             ccCCcCCcccccccc
Q 039228          338 KSLTNNRAPKLKASS  352 (356)
Q Consensus       338 ~~~~~~~~~~~~~~~  352 (356)
                      +++-.+..|.+++.-
T Consensus       347 ~nlw~~~PP~l~py~  361 (604)
T KOG0592|consen  347 ENLWQQTPPKLQPYK  361 (604)
T ss_pred             hhhhhcCCCcccCCC
Confidence            666677777766653

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.7e-40  Score=284.35  Aligned_cols=240  Identities=22%  Similarity=0.238  Sum_probs=177.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRFI--------------  135 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~--------------  135 (356)
                      .+|...++||+|.||.||+|++..+|+.||||.++....  ......++|++.|+.++|+||+.++              
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            468888999999999999999999999999999975532  2345688999999999999999983              


Q ss_pred             -----------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          136 -----------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       136 -----------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                             .++.+++.||+|||.+.   |+||||||.|+|++++|.+||+|||+|+.+.......
T Consensus        82 fm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~---IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~  158 (318)
T KOG0659|consen   82 FMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKW---ILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQ  158 (318)
T ss_pred             eccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhh---hhcccCCccceEEcCCCcEEeecccchhccCCCCccc
Confidence                                   36778999999999999   9999999999999999999999999999876544322


Q ss_pred             ccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      .    ..+-|.+|+|||.+.|. .|+...||||.||++.||+-|.+-|.+..+ -..+....+..-.....+|-+..-.+
T Consensus       159 ~----~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sD-idQL~~If~~LGTP~~~~WP~~~~lp  233 (318)
T KOG0659|consen  159 T----HQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSD-IDQLSKIFRALGTPTPDQWPEMTSLP  233 (318)
T ss_pred             c----cceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCch-HHHHHHHHHHcCCCCcccCccccccc
Confidence            1    22669999999998874 599999999999999999999887764322 12233333333222222222222222


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ++...........+....    .+.....+|+..++..||.+|++++|++++
T Consensus       234 dY~~~~~~P~~~~~~lf~----aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  234 DYVKIQQFPKPPLNNLFP----AASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             cHHHHhcCCCCccccccc----cccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            222111111111122222    344556899999999999999999999875

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-41  Score=315.16  Aligned_cols=220  Identities=24%  Similarity=0.396  Sum_probs=179.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      +.+++++.||+|.||.||.|.++.+ ..||+|.++.. ....+.|.+|+++|++|+|+|||++                 
T Consensus       206 ~~l~l~~~LG~G~FG~V~~g~~~~~-~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m  283 (468)
T KOG0197|consen  206 EELKLIRELGSGQFGEVWLGKWNGS-TKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYM  283 (468)
T ss_pred             HHHHHHHHhcCCccceEEEEEEcCC-CcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEec
Confidence            3466788999999999999999855 69999998754 3445789999999999999999987                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.||+.|++||++++   +|||||.+.|||++++..+||+|||+|+......   
T Consensus       284 ~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~---~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~---  357 (468)
T KOG0197|consen  284 PKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKN---YIHRDLAARNILVDEDLVVKISDFGLARLIGDDE---  357 (468)
T ss_pred             ccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCC---ccchhhhhhheeeccCceEEEcccccccccCCCc---
Confidence                                  679999999999999999   9999999999999999999999999999433221   


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ........-+.-|.|||.+..+.++.+||||||||+||||+| |+.||..+...     +.         .+.++...  
T Consensus       358 Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~-----ev---------~~~le~Gy--  421 (468)
T KOG0197|consen  358 YTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNE-----EV---------LELLERGY--  421 (468)
T ss_pred             eeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHH-----HH---------HHHHhccC--
Confidence            222333344667999999999999999999999999999999 99998754321     11         11122211  


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                                      .+..+..|+..+.+||..||+.+|++|||+..+...|+.+....
T Consensus       422 ----------------Rlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~~  465 (468)
T KOG0197|consen  422 ----------------RLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLEDFFTST  465 (468)
T ss_pred             ----------------cCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhcc
Confidence                            12223478889999999999999999999999999998887643

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-40  Score=301.43  Aligned_cols=228  Identities=21%  Similarity=0.279  Sum_probs=177.6

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..++|++..+||.|.-++||+|+...++..||||+++.+.. ...+.+.+|+..|+.++||||+++              
T Consensus        24 n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVm  103 (516)
T KOG0582|consen   24 NAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVM  103 (516)
T ss_pred             CccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEee
Confidence            35789999999999999999999999999999999986543 335889999999999999999987              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..|+++++.||.|||.+|   .||||||+.||||+++|.+||+|||.+..+....
T Consensus       104 pfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G---~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G  180 (516)
T KOG0582|consen  104 PFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNG---HIHRDVKAGNILIDSDGTVKLADFGVSASLFDSG  180 (516)
T ss_pred             hhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcC---ceecccccccEEEcCCCcEEEcCceeeeeecccC
Confidence                                     237789999999999999   9999999999999999999999999988776554


Q ss_pred             CCCccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .........++||+.|||||++..  ..|+.|+||||||++..||.+|..||.....-..-+... ....|.......+ 
T Consensus       181 ~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tL-qn~pp~~~t~~~~-  258 (516)
T KOG0582|consen  181 DRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTL-QNDPPTLLTSGLD-  258 (516)
T ss_pred             ceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHh-cCCCCCcccccCC-
Confidence            333333377899999999999643  569999999999999999999999997432211111110 0000000000000 


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                           .+........+.+++..||..||.+|||++++++.
T Consensus       259 ---------------------~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  259 ---------------------KDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             ---------------------hHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence                                 01112334478899999999999999999999863

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-41  Score=301.94  Aligned_cols=164  Identities=31%  Similarity=0.475  Sum_probs=147.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|.+.+.||+|+||+||+|+++.++..||||.+.+.  .....+.+..|+.+|+.++|||||++             
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            357899999999999999999999999999999999765  45556778899999999999999998             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC------CceEEcccccccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND------LFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~------~~~kl~Dfg~a~~  184 (356)
                                              ..++.|++.||++||+++   ||||||||+||||+..      -.+||+|||+|+.
T Consensus        88 MEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~---IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~  164 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENN---IIHRDLKPQNILLSTTARNDTSPVLKIADFGFARF  164 (429)
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCcceEEeccCCCCCCCceEEecccchhhh
Confidence                                    337789999999999999   9999999999999764      4689999999998


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      +..     .......+|++.|||||++....|+.|+|+||+|+++|+|++|+.||+.
T Consensus       165 L~~-----~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a  216 (429)
T KOG0595|consen  165 LQP-----GSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDA  216 (429)
T ss_pred             CCc-----hhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccc
Confidence            763     3445568999999999999999999999999999999999999999974

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-41  Score=307.45  Aligned_cols=236  Identities=19%  Similarity=0.220  Sum_probs=177.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchH-HHHHHHHHHhhcC-CCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK-SFMAECKALKNIC-HRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~-~~~~E~~~l~~l~-h~niv~l--------------  134 (356)
                      -++|.+++.||.|.||.||+|+...++..||||.++.......+ .-++|+..|++|+ |||||++              
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fV   88 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFV   88 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeee
Confidence            45799999999999999999999999999999999755333222 2468999999999 9999998              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..|+.||++||+|+|.+|   +.|||+||+|||+.....+||+|||+|+.....  
T Consensus        89 fE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~G---fFHRDlKPENiLi~~~~~iKiaDFGLARev~Sk--  163 (538)
T KOG0661|consen   89 FEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHG---FFHRDLKPENILISGNDVIKIADFGLAREVRSK--  163 (538)
T ss_pred             HHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcC---cccccCChhheEecccceeEecccccccccccC--
Confidence                                    458899999999999999   999999999999999999999999999976542  


Q ss_pred             CCccCCCCccccccccchhhhc-CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC---ch--HH
Q 039228          191 PTQSSSNGVRRTIGYTALDYDL-GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN---RV--MD  263 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~---~~--~~  263 (356)
                         ...+..+.|.+|+|||++. .+-|+.+.|||++||+++|+.+-++-|.+..+-+... ....-.- |.   +.  ..
T Consensus       164 ---pPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~-KIc~VLGtP~~~~~~eg~~  239 (538)
T KOG0661|consen  164 ---PPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIY-KICEVLGTPDKDSWPEGYN  239 (538)
T ss_pred             ---CCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHH-HHHHHhCCCccccchhHHH
Confidence               3344578899999999876 4678999999999999999999999998765433221 1111111 11   11  11


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +... +.-..+       .+...........+..+..+|+.+|+++||++||||+++++.
T Consensus       240 La~~-mnf~~P-------~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  240 LASA-MNFRFP-------QVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             HHHH-hccCCC-------cCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence            1111 111110       111111111222455677899999999999999999999875

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-40  Score=301.12  Aligned_cols=226  Identities=23%  Similarity=0.308  Sum_probs=175.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ..++...+.||+|+||.||++.+..++...|||.+........+.+.+|+.+|.+++|||||++                
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            3458888999999999999999998899999999876543346778999999999999999987                


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEcccccccccccCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~  189 (356)
                                              ..+..||+.||.|||++|   ||||||||+|||++. ++.+||+|||+++.... .
T Consensus        96 Ey~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g---~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~-~  171 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKG---IVHCDIKPANILLDPSNGDVKLADFGLAKKLES-K  171 (313)
T ss_pred             eccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCcccceEEEeCCCCeEEeccCcccccccc-c
Confidence                                    347789999999999999   999999999999999 79999999999987664 1


Q ss_pred             CCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      ...........||+.|||||++.++ ....++|||||||++.||+||+.||.....   .............        
T Consensus       172 ~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~---~~~~~~~ig~~~~--------  240 (313)
T KOG0198|consen  172 GTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFE---EAEALLLIGREDS--------  240 (313)
T ss_pred             cccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcc---hHHHHHHHhccCC--------
Confidence            1222334458899999999999853 334599999999999999999999975311   0011111111000        


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                       .                  +..+...+....+++..|+..||+.||||++++....-....
T Consensus       241 -~------------------P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  241 -L------------------PEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNS  283 (313)
T ss_pred             -C------------------CCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhccc
Confidence             0                  011113344567999999999999999999999876554433

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.3e-40  Score=305.63  Aligned_cols=212  Identities=26%  Similarity=0.361  Sum_probs=176.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|.+.+.||+|+||.||+|+.+.+.+.||+|.+.+...  ...+.+.+|+++++.++|||||.+               
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            578999999999999999999999999999999975533  345678999999999999999998               


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   |+|||+||.|||++.+|.+|++|||+|+.+...    .
T Consensus        82 ~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~r---ilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~----t  154 (808)
T KOG0597|consen   82 YAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNR---ILHRDMKPQNILLEKGGTLKLCDFGLARAMSTN----T  154 (808)
T ss_pred             hhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcC---cccccCCcceeeecCCCceeechhhhhhhcccC----c
Confidence                                 347889999999999999   999999999999999999999999999976542    3


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                      .....+.||+.|||||...+.+|+..+|+||+||++|||++|++||-.                 ..+.+++...+..+.
T Consensus       155 ~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a-----------------~si~~Lv~~I~~d~v  217 (808)
T KOG0597|consen  155 SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYA-----------------RSITQLVKSILKDPV  217 (808)
T ss_pred             eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchH-----------------HHHHHHHHHHhcCCC
Confidence            445568899999999999999999999999999999999999999952                 122233332222221


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..                +.+....+.+++...|..||..|.++.+++..
T Consensus       218 ~~----------------p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~H  251 (808)
T KOG0597|consen  218 KP----------------PSTASSSFVNFLQGLLIKDPAQRLTWTDLLGH  251 (808)
T ss_pred             CC----------------cccccHHHHHHHHHHhhcChhhcccHHHHhcC
Confidence            10                01344457889999999999999999999864

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-39  Score=300.94  Aligned_cols=215  Identities=21%  Similarity=0.255  Sum_probs=179.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ..|.....||+|+.|.||.|....+++.||||.+........+-+++|+.+|+..+|+|||.+                 
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeec
Confidence            457888899999999999999999999999999998877777789999999999999999998                 


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..||++++.||+|||.+|   |+|||||.+|||++.+|.+||+|||++..+....    ..
T Consensus       353 ~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~g---IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~----~K  425 (550)
T KOG0578|consen  353 EGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARG---IIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQ----SK  425 (550)
T ss_pred             CCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcc---eeeeccccceeEeccCCcEEEeeeeeeecccccc----Cc
Confidence                               248899999999999999   9999999999999999999999999998765443    24


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      ....+||+.|||||+.....|+++.||||||++++||+-|.+||-.    +..+.......-.+.      +.+      
T Consensus       426 R~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYln----E~PlrAlyLIa~ng~------P~l------  489 (550)
T KOG0578|consen  426 RSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLN----ENPLRALYLIATNGT------PKL------  489 (550)
T ss_pred             cccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccC----CChHHHHHHHhhcCC------CCc------
Confidence            5668999999999999999999999999999999999999999853    222322221111110      000      


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                    .........+.+++.+||..|+++||++.+||+.
T Consensus       490 --------------k~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  490 --------------KNPEKLSPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             --------------CCccccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence                          1112445578899999999999999999999973

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-39  Score=288.76  Aligned_cols=243  Identities=21%  Similarity=0.206  Sum_probs=177.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEee--ccCccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--IQCQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~--~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ....|..++.||+|+||.|+.|.+..+|+.||||.+.  .......++..+|+++|+.++|+||+.+             
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~   99 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN   99 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence            3556777899999999999999999999999999987  4455667889999999999999999976             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  -.++.|+++||.|+|+.+   |+||||||+|++++.++.+||+|||+|+...
T Consensus       100 DvYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAn---ViHRDLKPsNll~n~~c~lKI~DFGLAR~~~  176 (359)
T KOG0660|consen  100 DVYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSAN---VIHRDLKPSNLLLNADCDLKICDFGLARYLD  176 (359)
T ss_pred             eeEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhccc---ccccccchhheeeccCCCEEeccccceeecc
Confidence                                        126789999999999999   9999999999999999999999999999876


Q ss_pred             cCCCCCccCCCCccccccccchhhhc-CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC----ch
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDL-GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN----RV  261 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~----~~  261 (356)
                      ..  ......+..+.|.+|.|||.+. ...|+.+.||||.|||+.||++|++-|.+...-  .-........+.    .+
T Consensus       177 ~~--~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v--~Ql~lI~~~lGtP~~e~l  252 (359)
T KOG0660|consen  177 KF--FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYV--HQLQLILELLGTPSEEDL  252 (359)
T ss_pred             cc--CcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchH--HHHHHHHHhcCCCCHHHH
Confidence            54  2334446688899999999875 467999999999999999999999999753221  111111111111    11


Q ss_pred             HHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          262 MDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       262 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..+-+..........+.....-.....+    ......++|+.+||..||.+|+|++|.++.
T Consensus       253 ~~i~s~~ar~yi~slp~~p~~~f~~~fp----~a~p~AidLlekmL~fdP~kRita~eAL~h  310 (359)
T KOG0660|consen  253 QKIRSEKARPYIKSLPQIPKQPFSSIFP----NANPLAIDLLEKMLVFDPKKRITAEEALAH  310 (359)
T ss_pred             HHhccHHHHHHHHhCCCCCCCCHHHHcC----CCCHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            1111111110000000011111111112    223345789999999999999999998863

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-39  Score=294.19  Aligned_cols=213  Identities=22%  Similarity=0.262  Sum_probs=173.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRFIS--------------  136 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~--------------  136 (356)
                      ..|+..+.||+|.||.||+|.+..+++.||+|++...... ..+.+.+|+.+|..++++||.+++.              
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            3477789999999999999999999999999999866443 4577889999999999999988722              


Q ss_pred             -----------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          137 -----------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       137 -----------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                             ++++++.||.|||.++   .+|||||+.|||+..+|.+||+|||++..+....    
T Consensus        93 ~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~---kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~----  165 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEK---KIHRDIKAANILLSESGDVKLADFGVAGQLTNTV----  165 (467)
T ss_pred             hcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcc---eecccccccceeEeccCcEEEEecceeeeeechh----
Confidence                                   6678999999999999   9999999999999999999999999998665432    


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                      .....++||+.|||||++.+..|+.++||||||++.+||++|.+|+.......      +...++.+.    .|.+.+  
T Consensus       166 ~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr------vlflIpk~~----PP~L~~--  233 (467)
T KOG0201|consen  166 KRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR------VLFLIPKSA----PPRLDG--  233 (467)
T ss_pred             hccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcce------EEEeccCCC----CCcccc--
Confidence            33367999999999999998899999999999999999999999987533211      000111111    111111  


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                          .+...+.+++..||+.||+.||+|.++++.
T Consensus       234 --------------------~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  234 --------------------DFSPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             --------------------ccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence                                233457899999999999999999999863

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.1e-39  Score=283.09  Aligned_cols=242  Identities=22%  Similarity=0.251  Sum_probs=175.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .+.|+.++.|++|.||.||+|+++.+++.||+|+++...  ....-..++||.+|.+.+|||||.+              
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~  154 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYI  154 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeee
Confidence            456999999999999999999999999999999997543  2333457899999999999999987              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..+..|++.||+|||.+.   |+|||||++|+|+.+.|.+||+|||+|+..+...
T Consensus       155 VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~w---ilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~  231 (419)
T KOG0663|consen  155 VMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNW---ILHRDLKTSNLLLSHKGILKIADFGLAREYGSPL  231 (419)
T ss_pred             eHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhce---eEecccchhheeeccCCcEEecccchhhhhcCCc
Confidence                                     236789999999999999   9999999999999999999999999999776542


Q ss_pred             CCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh-CCC-chHHHhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA-FPN-RVMDIVN  266 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~-~~~~~~~  266 (356)
                          ...+..+-|++|+|||.+.+. .|++..|+||+|||+.||+++++-|.+..+-+ .+....... .|. .++.-++
T Consensus       232 ----k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~d-Ql~~If~llGtPte~iwpg~~  306 (419)
T KOG0663|consen  232 ----KPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEID-QLDKIFKLLGTPSEAIWPGYS  306 (419)
T ss_pred             ----ccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHH-HHHHHHHHhCCCccccCCCcc
Confidence                234456779999999999875 58999999999999999999999998654432 222222222 121 1111000


Q ss_pred             hh-hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          267 LV-LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       267 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .. ..+.. .........++..+....  ..+.-.+|+...+..||.+|.|+++.++.
T Consensus       307 ~lp~~k~~-~f~~~pyn~lr~kF~~~~--lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  307 ELPAVKKM-TFSEHPYNNLRKKFGALS--LSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             ccchhhcc-ccCCCCchhhhhhccccc--cchhHHHHHHHHhccCccccccHHHhhcc
Confidence            00 00000 000011111111111111  22345788999999999999999998763

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-39  Score=294.39  Aligned_cols=223  Identities=24%  Similarity=0.249  Sum_probs=174.4

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--------------ccchHHHHHHHHHHhhcCCCChHH
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--------------QGASKSFMAECKALKNICHRNLVR  133 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------------~~~~~~~~~E~~~l~~l~h~niv~  133 (356)
                      .+..+.|++...||+|.||.|-+|++..+++.||||++.+..              ....+...+|+.+|+++.|||||+
T Consensus        93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~  172 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVK  172 (576)
T ss_pred             ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeE
Confidence            345688999999999999999999999999999999996431              122357889999999999999999


Q ss_pred             H---------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          134 F---------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       134 l---------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                      |                                       ..++.+++.||+|||.+|   ||||||||+|+||+++|.+
T Consensus       173 LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Qg---iiHRDIKPsNLLl~~~g~V  249 (576)
T KOG0585|consen  173 LIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQG---IIHRDIKPSNLLLSSDGTV  249 (576)
T ss_pred             EEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEEcCCCcE
Confidence            8                                       458999999999999999   9999999999999999999


Q ss_pred             EEcccccccccccCCC-CCccCCCCccccccccchhhhcCCC----CCCccchHhHHHHHHHHHcCCCCCCccccCCccH
Q 039228          175 HIGDFELARFRQEVSN-PTQSSSNGVRRTIGYTALDYDLGSE----VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNL  249 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~  249 (356)
                      ||+|||.+........ .........+||+.|+|||...++.    .+.+.||||+||+||.|+.|+.||...+.     
T Consensus       250 KIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~-----  324 (576)
T KOG0585|consen  250 KISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFE-----  324 (576)
T ss_pred             EeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchH-----
Confidence            9999999986643322 1122334588999999999987633    34678999999999999999999963211     


Q ss_pred             HHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          250 HNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      ...        ...+++..+.-.                  ..++.-+.+.+|+.++|..||+.|.+..+|....
T Consensus       325 ~~l--------~~KIvn~pL~fP------------------~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hp  373 (576)
T KOG0585|consen  325 LEL--------FDKIVNDPLEFP------------------ENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHP  373 (576)
T ss_pred             HHH--------HHHHhcCcccCC------------------CcccccHHHHHHHHHHhhcChhheeehhhheecc
Confidence            111        112222222100                  1113445678999999999999999998886544

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=1.2e-38  Score=298.64  Aligned_cols=224  Identities=22%  Similarity=0.300  Sum_probs=170.2

Q ss_pred             hcCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHHH-------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRFI-------  135 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~-------  135 (356)
                      ..++|++.+.||+|+||.||+|.+.     .++..||+|++.... ....+.+.+|+.++..+ +||||++++       
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            3567999999999999999999852     345789999987432 23346788999999999 899998751       


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          136 --------------------------------------------------------------------------------  135 (356)
Q Consensus       136 --------------------------------------------------------------------------------  135 (356)
                                                                                                      
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD  164 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence                                                                                            


Q ss_pred             -------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCcccc
Q 039228          136 -------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT  202 (356)
Q Consensus       136 -------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt  202 (356)
                                   .++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.......  ........++
T Consensus       165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~--~~~~~~~~~~  239 (338)
T cd05102         165 DLWKSPLTMEDLICYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPD--YVRKGSARLP  239 (338)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCccceEEEcCCCcEEEeecccccccccCcc--hhcccCCCCC
Confidence                         14569999999999999   99999999999999999999999999976532211  1112234456


Q ss_pred             ccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccccccc
Q 039228          203 IGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNS  281 (356)
Q Consensus       203 ~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  281 (356)
                      ..|+|||++.+..++.++|||||||++|||++ |..||....... .+..   ....+        ... .         
T Consensus       240 ~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~-~~~~---~~~~~--------~~~-~---------  297 (338)
T cd05102         240 LKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE-EFCQ---RLKDG--------TRM-R---------  297 (338)
T ss_pred             ccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH-HHHH---HHhcC--------CCC-C---------
Confidence            78999999999899999999999999999997 999997432111 1111   00000        000 0         


Q ss_pred             chhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          282 NMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       282 ~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                               .+..++..+.+|+.+||+.||++|||+.+|++.|+.+..
T Consensus       298 ---------~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         298 ---------APENATPEIYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             ---------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                     001233467899999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.7e-38  Score=297.15  Aligned_cols=233  Identities=19%  Similarity=0.195  Sum_probs=168.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|+||.||+|++..++..||||.+...  .......+.+|+.+++.++||||+++                
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            488899999999999999999999999999998643  22334568899999999999999875                


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++......
T Consensus        81 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~  157 (338)
T cd07859          81 VVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTAN---VFHRDLKPKNILANADCKLKICDFGLARVAFNDT  157 (338)
T ss_pred             EEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEccCcccccccccc
Confidence                                     347789999999999999   9999999999999999999999999997543222


Q ss_pred             CCCccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc----hH-
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR----VM-  262 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~----~~-  262 (356)
                      .. ........||..|+|||++.+  ..++.++|||||||++|||++|++||.....  ..............    .. 
T Consensus       158 ~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~~  234 (338)
T cd07859         158 PT-AIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNV--VHQLDLITDLLGTPSPETISR  234 (338)
T ss_pred             Cc-cccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCCh--HHHHHHHHHHhCCCCHHHHHH
Confidence            11 112234678999999999865  6789999999999999999999999964321  11111111111000    00 


Q ss_pred             -------HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          263 -------DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       263 -------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                             ..+.........        -...    ........+.+++.+||+.||++|||++++++.
T Consensus       235 i~~~~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         235 VRNEKARRYLSSMRKKQPV--------PFSQ----KFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             hhhhhHHHHHHhhcccCCC--------chHH----hcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                   011100000000        0000    001123456899999999999999999999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=2.5e-38  Score=293.76  Aligned_cols=226  Identities=22%  Similarity=0.338  Sum_probs=173.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCe----EEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRA----VVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ..+|++.+.||+|+||.||+|.+..++.    .||+|.++... ....+.+..|+.+++.++||||+++           
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~   85 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL   85 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCcee
Confidence            3569999999999999999999865544    48999986443 3345678899999999999999987           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||+|||+.+   |+||||||+||+++.++.+||+|||+++.....
T Consensus        86 v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~  162 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAD  162 (316)
T ss_pred             eeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcC---eeccccchhheEecCCCcEEEccccccccccCC
Confidence                                      457889999999999999   999999999999999999999999999876433


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ...  .......++..|+|||++.+..++.++||||||+++|||++ |..||......  .+..            ++..
T Consensus       163 ~~~--~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~--~~~~------------~~~~  226 (316)
T cd05108         163 EKE--YHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISS------------ILEK  226 (316)
T ss_pred             Ccc--eeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH--HHHH------------HHhC
Confidence            221  11122334678999999999999999999999999999998 99998642111  1111            1111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      .....                  .+..+...+.+++.+||+.+|++||++.+++..|..+...-..
T Consensus       227 ~~~~~------------------~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~~~~  274 (316)
T cd05108         227 GERLP------------------QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQR  274 (316)
T ss_pred             CCCCC------------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcCCch
Confidence            00000                  0012334578999999999999999999999999888765433

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=8.7e-38  Score=285.83  Aligned_cols=240  Identities=19%  Similarity=0.232  Sum_probs=172.2

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....  ....+.+.+|+.+++.++||||+++               
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            46999999999999999999999999999999987542  2334678899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++........  
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--  155 (287)
T cd07848          81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKND---IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSN--  155 (287)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccCccccccccc--
Confidence                                  347889999999999999   99999999999999999999999999986533221  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh--CCCchHHHh--hhh
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA--FPNRVMDIV--NLV  268 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~  268 (356)
                       .......|+..|+|||++.+..++.++|||||||++|||++|++||......+ .+.......  .+.......  ++.
T Consensus       156 -~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  233 (287)
T cd07848         156 -ANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEID-QLFTIQKVLGPLPAEQMKLFYSNPR  233 (287)
T ss_pred             -ccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhhCCCCHHHHHhhhccch
Confidence             12234568999999999998889999999999999999999999997532211 111111110  111100000  000


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...............    ...........+.+++.+||+.||++|||++++++
T Consensus       234 ~~~~~~~~~~~~~~~----~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         234 FHGLRFPAVNHPQSL----ERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hcccccCcccCcccH----HHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            000000000000000    00001123456899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-38  Score=294.20  Aligned_cols=219  Identities=21%  Similarity=0.262  Sum_probs=173.7

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc----Cc-cchHHHHHHHHHHhhcC-CCChHHH--------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ----CQ-GASKSFMAECKALKNIC-HRNLVRF--------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~----~~-~~~~~~~~E~~~l~~l~-h~niv~l--------  134 (356)
                      ...+.|.+.+.||+|+||.|+.|.+..++..||+|++...    .. ...+.+.+|+.++++++ ||||+++        
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            3467899999999999999999999999999999987653    12 23456778999999999 9999987        


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEcccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARF  184 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~~  184 (356)
                                                   ..++.|++.|++|+|++|   |+||||||+|||++.+ +++||+|||++..
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~g---i~HRDLK~ENilld~~~~~~Kl~DFG~s~~  170 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRG---IVHRDLKPENILLDGNEGNLKLSDFGLSAI  170 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEecCCCCCEEEeccccccc
Confidence                                         348999999999999999   9999999999999999 9999999999987


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCC-CC-CccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSE-VS-TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ..    .........+||+.|+|||++.+.. |+ .++||||+||+||.|++|+.||+.     ..........      
T Consensus       171 ~~----~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d-----~~~~~l~~ki------  235 (370)
T KOG0583|consen  171 SP----GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD-----SNVPNLYRKI------  235 (370)
T ss_pred             cC----CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC-----ccHHHHHHHH------
Confidence            63    1133455689999999999999877 75 789999999999999999999974     1111111111      


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHH-HHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLEC-LIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                            ..+.+..                +... ...+..|+.+|+..||.+|+|+.+++ .-.-+.
T Consensus       236 ------~~~~~~~----------------p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~-~h~w~~  279 (370)
T KOG0583|consen  236 ------RKGEFKI----------------PSYLLSPEARSLIEKMLVPDPSTRITLLEIL-EHPWFQ  279 (370)
T ss_pred             ------hcCCccC----------------CCCcCCHHHHHHHHHHcCCCcccCCCHHHHh-hChhhc
Confidence                  1111100                0011 23567999999999999999999999 433333

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=8.3e-38  Score=288.53  Aligned_cols=241  Identities=23%  Similarity=0.291  Sum_probs=168.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||.|+||.||+|....+++.||+|++..... .....+.+|+.+++.++||||+++               
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            4689999999999999999999998999999999875432 223467789999999999999986               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++.......   
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~---  157 (303)
T cd07869          84 YVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLARAKSVPS---  157 (303)
T ss_pred             CCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECCCCcceeccCCC---
Confidence                                  347789999999999999   9999999999999999999999999987543221   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh----h
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN----L  267 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  267 (356)
                       .......+++.|+|||++.+ ..++.++|||||||++|+|++|..||.........+..............+..    +
T Consensus       158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (303)
T cd07869         158 -HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLP  236 (303)
T ss_pred             -ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhcc
Confidence             12233567899999999865 45788999999999999999999999753221111111111110000000000    0


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....+..  ....+......+..  ......+.+++.+||+.||.+|||+.++++
T Consensus       237 ~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         237 HFKPERF--TLYSPKNLRQAWNK--LSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             ccccccc--cccCCccHHHHhhc--cCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence            0000000  00000000000000  011235678999999999999999999985

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=270.31  Aligned_cols=228  Identities=18%  Similarity=0.193  Sum_probs=181.6

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|.+.+.||.|||+.||++....++..+|+|++.....+..+...+|++..++++|||++++               
T Consensus        19 n~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~   98 (302)
T KOG2345|consen   19 NNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEA   98 (302)
T ss_pred             cCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeE
Confidence            45789999999999999999999999999999999988877788899999999999999999998               


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     +.|+.++++||.+||+.. +++.||||||.|||+.+.+.++|.|||.+.
T Consensus        99 yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~-~~yAH~DiKP~NILls~~~~~vl~D~GS~~  177 (302)
T KOG2345|consen   99 YLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKE-PPYAHRDIKPANILLSDSGLPVLMDLGSAT  177 (302)
T ss_pred             EEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccC-CcccccCCCcceeEecCCCceEEEeccCcc
Confidence                                           458899999999999985 679999999999999999999999999987


Q ss_pred             ccccCCCC-----CccCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH
Q 039228          184 FRQEVSNP-----TQSSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       184 ~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      ........     ..........|..|+|||.+.   +...+.++|||||||++|+|+.|..||+.....+.++.-.   
T Consensus       178 ~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLA---  254 (302)
T KOG2345|consen  178 QAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALA---  254 (302)
T ss_pred             ccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEe---
Confidence            54221110     111122344688999999885   4557899999999999999999999998766544332111   


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                              +.+..+.-                 ++.. ...+.+.+++..|++.||.+||++.+|+..++.+
T Consensus       255 --------v~n~q~s~-----------------P~~~-~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  255 --------VQNAQISI-----------------PNSS-RYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             --------eecccccc-----------------CCCC-CccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence                    11111100                 0000 2445788999999999999999999999998764

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9.2e-38  Score=298.00  Aligned_cols=234  Identities=19%  Similarity=0.220  Sum_probs=169.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|...      ...+.+|+.++++++||||+++                
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            367999999999999999999999999999999753      2456789999999999999987                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          +.++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++......   ..
T Consensus       165 ~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~---IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~---~~  238 (391)
T PHA03212        165 YKTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENR---IIHRDIKAENIFINHPGDVCLGDFGAACFPVDIN---AN  238 (391)
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHhEEEcCCCCEEEEeCCccccccccc---cc
Confidence                                457889999999999999   9999999999999999999999999997533221   11


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccC--C----ccHHHHHHHhC------CCchH
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG--D----LNLHNFARMAF------PNRVM  262 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~--~----~~~~~~~~~~~------~~~~~  262 (356)
                      ......||+.|+|||++.+..++.++|||||||++|||++|..||......  .    ..+........      +....
T Consensus       239 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  318 (391)
T PHA03212        239 KYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQ  318 (391)
T ss_pred             ccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchh
Confidence            223467899999999999999999999999999999999999887432211  0    11111111110      10000


Q ss_pred             HHhhhhh---ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          263 DIVNLVL---LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       263 ~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..++...   ..........      ..........+..+.+|+.+||+.||.+|||+.++++
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        319 ANLDEIYIGLAKKSSRKPGS------RPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             HHHHHHHHHHHhccCCCCCC------CCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence            0011000   0000000000      0001111234557889999999999999999999985

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.6e-38  Score=279.91  Aligned_cols=233  Identities=21%  Similarity=0.192  Sum_probs=170.7

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      .|...+++|+|+||.||+|...++++.||||..-....    ---+|+.+|+.++|||||++                  
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r----~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR----YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC----cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            37778899999999999999999999999999754322    12369999999999999987                  


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEcccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~~~~  186 (356)
                                                 .-+..||.+||.|||+.+   |+||||||+|+|+|.+ |.+||+|||.|+.+.
T Consensus       101 leymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~---IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~  177 (364)
T KOG0658|consen  101 LEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHG---ICHRDIKPQNLLVDPDTGVLKICDFGSAKVLV  177 (364)
T ss_pred             HHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcC---cccCCCChheEEEcCCCCeEEeccCCcceeec
Confidence                                       116779999999999999   9999999999999955 999999999999876


Q ss_pred             cCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      .....     .....|..|+|||.+.+ ..|+.+.||||.||++.||+.|++-|.+.. +...+...+...-...-.++-
T Consensus       178 ~~epn-----iSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s-~~dQL~eIik~lG~Pt~e~I~  251 (364)
T KOG0658|consen  178 KGEPN-----ISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDS-SVDQLVEIIKVLGTPTREDIK  251 (364)
T ss_pred             cCCCc-----eeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCC-HHHHHHHHHHHhCCCCHHHHh
Confidence            54322     34677999999999887 469999999999999999999999998632 223444444443322222221


Q ss_pred             hhhhccccccccccccchhhhhchh-hHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMN-SRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      . +. ..+.  .-..+++....+.. .......+..+++.+++.++|.+|.++.+++.
T Consensus       252 ~-mn-~~y~--~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  252 S-MN-PNYT--EFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             h-cC-cccc--cccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence            1 10 0000  00011111111111 11134446789999999999999999998875

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=297.49  Aligned_cols=210  Identities=22%  Similarity=0.241  Sum_probs=173.2

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcC-CCChHHH---------
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNIC-HRNLVRF---------  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~-h~niv~l---------  134 (356)
                      ....++|.++++||+|+||.|++|..+.+++.+|||++++.   .....+....|.+++.-.. ||.++.+         
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~  443 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH  443 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe
Confidence            34567899999999999999999999999999999999865   3455677888988888775 9999998         


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||.|||+++   |||||||.+|||||..|++||+|||+++....
T Consensus       444 l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~---IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~  520 (694)
T KOG0694|consen  444 LFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENG---IIYRDLKLDNLLLDTEGHVKIADFGLCKEGMG  520 (694)
T ss_pred             EEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcC---ceeeecchhheEEcccCcEEecccccccccCC
Confidence                                       337889999999999999   99999999999999999999999999985432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .    .....+++||+.|+|||++.+..|+.++|.|||||+|||||.|..||.+..++                 ++.|.
T Consensus       521 ~----g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEe-----------------e~Fds  579 (694)
T KOG0694|consen  521 Q----GDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEE-----------------EVFDS  579 (694)
T ss_pred             C----CCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHH-----------------HHHHH
Confidence            2    23556799999999999999999999999999999999999999999753322                 23333


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      .+..+...                +.-+..+.++++.+.+..||++|-.+
T Consensus       580 I~~d~~~y----------------P~~ls~ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  580 IVNDEVRY----------------PRFLSKEAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             HhcCCCCC----------------CCcccHHHHHHHHHHhccCcccccCC
Confidence            33322210                11344456889999999999999866

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-38  Score=316.37  Aligned_cols=221  Identities=23%  Similarity=0.317  Sum_probs=171.0

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+...+|+.++.||+||||.||+++++-+|+.||||++.... ......+.+|+.+|.+|+|||+|++            
T Consensus       475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~  554 (1351)
T KOG1035|consen  475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELT  554 (1351)
T ss_pred             hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCccc
Confidence            356778999999999999999999999999999999997553 3344678899999999999999998            


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          135 --------------------------------------------------------------------------------  134 (356)
Q Consensus       135 --------------------------------------------------------------------------------  134 (356)
                                                                                                      
T Consensus       555 ~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS  634 (1351)
T KOG1035|consen  555 VLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTS  634 (1351)
T ss_pred             cccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccc
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHHHh
Q 039228          135 -----------------------------------------------------------------ISIAIDVASALDYLH  149 (356)
Q Consensus       135 -----------------------------------------------------------------~~i~~~i~~aL~~LH  149 (356)
                                                                                       +.++.+|+.||+|+|
T Consensus       635 ~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH  714 (1351)
T KOG1035|consen  635 DSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIH  714 (1351)
T ss_pred             ccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence                                                                             558899999999999


Q ss_pred             hcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc--------------cCCCCCccCCCCccccccccchhhhcCCC
Q 039228          150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ--------------EVSNPTQSSSNGVRRTIGYTALDYDLGSE  215 (356)
Q Consensus       150 ~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~--------------~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  215 (356)
                      ++|   ||||||||.||++|+++.+||+|||+|+...              ..........+..+||.-|+|||++.+..
T Consensus       715 ~~g---iIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~  791 (1351)
T KOG1035|consen  715 DQG---IIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTS  791 (1351)
T ss_pred             hCc---eeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccc
Confidence            999   9999999999999999999999999998621              00111223446688999999999997654


Q ss_pred             ---CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhH
Q 039228          216 ---VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSR  292 (356)
Q Consensus       216 ---~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  292 (356)
                         |+.|+|||||||+++||+.   ||....+....+.......+|.. .++.++.                        
T Consensus       792 ~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR~g~iP~~-~~f~~~~------------------------  843 (1351)
T KOG1035|consen  792 SNKYNSKIDMYSLGIVLFEMLY---PFGTSMERASILTNLRKGSIPEP-ADFFDPE------------------------  843 (1351)
T ss_pred             cccccchhhhHHHHHHHHHHhc---cCCchHHHHHHHHhcccCCCCCC-ccccccc------------------------
Confidence               9999999999999999985   56543222222222222222222 1111111                        


Q ss_pred             HHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          293 LECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       293 ~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                         ...=.++|.++++.||.+||||.||+.
T Consensus       844 ---~~~e~slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  844 ---HPEEASLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             ---chHHHHHHHHHhcCCCccCCCHHHHhh
Confidence               112268999999999999999999985

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-37  Score=284.02  Aligned_cols=209  Identities=22%  Similarity=0.256  Sum_probs=165.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....   ....+.+.+|+.+++.++||||+++              
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            46899999999999999999999999999999986432   2234568889999999999999997              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||+++.....   
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~---  154 (291)
T cd05612          81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKE---IVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR---  154 (291)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEEecCcchhccCC---
Confidence                                   347789999999999999   999999999999999999999999999755321   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                          .....|++.|+|||++.+..++.++|||||||++|+|++|+.||.....     ......        +.....  
T Consensus       155 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~-----~~~~~~--------i~~~~~--  215 (291)
T cd05612         155 ----TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP-----FGIYEK--------ILAGKL--  215 (291)
T ss_pred             ----cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH--------HHhCCc--
Confidence                1235689999999999998899999999999999999999999964221     111111        000000  


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~~  323 (356)
                      ...                  ......+.+++.+||+.||.+||+     ++++++.
T Consensus       216 ~~~------------------~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         216 EFP------------------RHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             CCC------------------ccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence            000                  012235679999999999999995     7777644

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.8e-37  Score=289.08  Aligned_cols=243  Identities=19%  Similarity=0.214  Sum_probs=169.1

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHHH-----------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRFI-----------  135 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~-----------  135 (356)
                      ...++|.+.+.||+|+||.||+|.+..+++.||||.+.....  ...+.+.+|+.+++.++||||++++           
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            346789999999999999999999999999999999864322  2345677899999999999999872           


Q ss_pred             ------------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          136 ------------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       136 ------------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                    .++.||+.||.|||+.+   |+||||||+||+++.++.+||+|||+++..
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~  168 (343)
T cd07878          92 FNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDCELRILDFGLARQA  168 (343)
T ss_pred             cCcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCChhhEEECCCCCEEEcCCccceec
Confidence                                          36789999999999999   999999999999999999999999999754


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ...       .....||..|+|||++.+ ..++.++|||||||++|+|++|+.||...... ..+..+..... ......
T Consensus       169 ~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~-~~~~~~  239 (343)
T cd07878         169 DDE-------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYI-DQLKRIMEVVG-TPSPEV  239 (343)
T ss_pred             CCC-------cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHhC-CCCHHH
Confidence            321       223567999999999876 56889999999999999999999999642211 11111111110 000011


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ................+.................+.+++.+||+.||++|||+.++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         240 LKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            10000000000000000000000000000112346799999999999999999999964

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.8e-37  Score=284.31  Aligned_cols=242  Identities=23%  Similarity=0.291  Sum_probs=168.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|.+.+.||.|+||.||+|....++..||+|++..... .....+.+|+.+++.++||||+++               
T Consensus         4 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (288)
T cd07871           4 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFE   83 (288)
T ss_pred             cccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEe
Confidence            4579999999999999999999999999999999875432 234567899999999999999986               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||+++......   
T Consensus        84 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~---  157 (288)
T cd07871          84 YLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRK---ILHRDLKPQNLLINEKGELKLADFGLARAKSVPT---  157 (288)
T ss_pred             CCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEECcCcceeeccCCC---
Confidence                                  347789999999999999   9999999999999999999999999997543221   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......+++.|+|||++.+ ..++.++||||+||++|+|++|+.||....... .+...... ......+........
T Consensus       158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~  234 (288)
T cd07871         158 -KTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKE-ELHLIFRL-LGTPTEETWPGITSN  234 (288)
T ss_pred             -ccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHH-hCCCChHHhhccccc
Confidence             12233567899999998865 568899999999999999999999996432111 11111111 111000000000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .... ....+...................+++.+||..||.+|||+.|+++
T Consensus       235 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         235 EEFR-SYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             hhhh-ccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            0000 0000000000000000112335679999999999999999999974

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=9.3e-38  Score=279.02  Aligned_cols=244  Identities=24%  Similarity=0.277  Sum_probs=175.9

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCC-hHHH---------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRN-LVRF---------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~n-iv~l---------------  134 (356)
                      .|..++.||+|.||+||+|+.+.+|+.||+|.+.....  .......+|+.+|++++|+| |+++               
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            47777889999999999999999999999999976543  34566789999999999999 8876               


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     ..+..||+.||+|||+++   |+||||||+||||+.+|.+||+|||+|+
T Consensus        92 l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~---IlHRDLKPQNlLi~~~G~lKlaDFGlAr  168 (323)
T KOG0594|consen   92 LYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHG---ILHRDLKPQNLLISSSGVLKLADFGLAR  168 (323)
T ss_pred             EEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCcceEEECCCCcEeeeccchHH
Confidence                                           247789999999999999   9999999999999999999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      .....    .......++|..|.|||++.+. .|++..||||+||+++||+++++-|.+..+-+ .+....+..-..+..
T Consensus       169 a~~ip----~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~-ql~~If~~lGtP~e~  243 (323)
T KOG0594|consen  169 AFSIP----MRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEID-QLFRIFRLLGTPNEK  243 (323)
T ss_pred             HhcCC----cccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHH-HHHHHHHHcCCCCcc
Confidence            55422    2234557789999999999987 69999999999999999999999988655422 122222211111111


Q ss_pred             HHhhhhhcccccc--ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH--HHHhh
Q 039228          263 DIVNLVLLNDNKV--LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD--LQSVN  328 (356)
Q Consensus       263 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~--L~~i~  328 (356)
                      .|-.-...+++..  .......-+....+    .......+++.+|++.+|.+|.|+...+.+  +..+.
T Consensus       244 ~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~----~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~  309 (323)
T KOG0594|consen  244 DWPGVSSLPDYKAPFPKWPGPKDLSSILP----KLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELP  309 (323)
T ss_pred             CCCCccccccccccCcCCCCccchHHhcc----ccCccHHHHHHHHhccCcccCcCHHHHhcChhhcccc
Confidence            1100000011110  00000000111111    111356789999999999999999999886  54443

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-38  Score=273.06  Aligned_cols=161  Identities=27%  Similarity=0.296  Sum_probs=145.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++++.||.|+||.|.+++.+.++..+|+|++++..   ....+...+|..+|+.+.||+++++             
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEE
Confidence            467999999999999999999999999999999997553   3445677899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.+|+.||+|||+.+   |++|||||+|||||.+|.+||+|||+|+.+...  
T Consensus       123 meyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~---iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r--  197 (355)
T KOG0616|consen  123 MEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLD---IIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR--  197 (355)
T ss_pred             EeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcC---eeeccCChHHeeeccCCcEEEEeccceEEecCc--
Confidence                                    348889999999999999   999999999999999999999999999976432  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                           .-..+||+.|+|||++...+++.++|.|||||++|||+.|.+||..
T Consensus       198 -----T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~  243 (355)
T KOG0616|consen  198 -----TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYD  243 (355)
T ss_pred             -----EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcC
Confidence                 3358899999999999999999999999999999999999999964

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=3.8e-37  Score=281.98  Aligned_cols=231  Identities=23%  Similarity=0.277  Sum_probs=164.6

Q ss_pred             CCCCccccceecCceEEEEEEECC-CCeEEEEEEeeccCc--cchHHHHHHHHHHhhc---CCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDL-NRAVVAIKVLSIQCQ--GASKSFMAECKALKNI---CHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l-----------  134 (356)
                      ++|++.+.||+|+||.||+|++.. ++..||+|.+.....  .....+.+|+.+++.+   +||||+++           
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            368999999999999999999854 568899999874422  2234566777777665   69999875           


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a  182 (356)
                                                      ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++
T Consensus        81 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---iiH~dlkp~Nil~~~~~~~kl~Dfg~~  157 (290)
T cd07862          81 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLA  157 (290)
T ss_pred             CCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEcCCCCEEEccccce
Confidence                                            347889999999999999   999999999999999999999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC--
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN--  259 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~--  259 (356)
                      +.....     .......|++.|+|||.+.+..++.++|||||||++|||++|.+||......+ .+........ +.  
T Consensus       158 ~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~-~~~~i~~~~~~~~~~  231 (290)
T cd07862         158 RIYSFQ-----MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPGEE  231 (290)
T ss_pred             EeccCC-----cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHH-HHHHHHHHhCCCChh
Confidence            765322     22234568999999999998899999999999999999999999997532211 1111111110 00  


Q ss_pred             chHHHh---hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 RVMDIV---NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ......   ...+...       .......    ........+.+++.+||+.||++|||+.++++
T Consensus       232 ~~~~~~~~~~~~~~~~-------~~~~~~~----~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         232 DWPRDVALPRQAFHSK-------SAQPIEK----FVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hchhhhcccchhccCC-------CCCCHHH----HccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence            000000   0000000       0000000    01123345679999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=3.2e-37  Score=291.44  Aligned_cols=165  Identities=25%  Similarity=0.250  Sum_probs=142.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..++..||+|++...  .......+.+|+.+++.++||||+++             
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            357899999999999999999999999999999998643  23345678899999999999999976             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+++   |+||||||+||+++.++.+||+|||+++....
T Consensus        99 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~  175 (359)
T cd07876          99 QDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTACT  175 (359)
T ss_pred             ceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEecCCCcccccc
Confidence                                       236789999999999999   99999999999999999999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      .     .......+|..|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       176 ~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         176 N-----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             C-----ccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            1     1223356789999999999999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.4e-38  Score=263.81  Aligned_cols=212  Identities=19%  Similarity=0.231  Sum_probs=173.6

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRFI-----------  135 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~-----------  135 (356)
                      ..++|++.+.||+|.||.||+|+.+.++..||+|++.++   ......++.+|+++.+.|+||||++++           
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            357899999999999999999999999999999998644   233456788999999999999999983           


Q ss_pred             ----------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          136 ----------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       136 ----------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                  .+..|++.||.|+|..+   ||||||||+|+|++..+.+||+|||.+..-. 
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~---VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p-  175 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAP-  175 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCC---cccCCCCHHHhccCCCCCeeccCCCceeecC-
Confidence                                        37789999999999988   9999999999999999999999999986432 


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                           .......+||..|.+||...+..++..+|+|++|++.||++.|.+||..... +.-..+.....+       ..+
T Consensus       176 -----~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~-~etYkrI~k~~~-------~~p  242 (281)
T KOG0580|consen  176 -----SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSH-SETYKRIRKVDL-------KFP  242 (281)
T ss_pred             -----CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhh-HHHHHHHHHccc-------cCC
Confidence                 2344568899999999999999999999999999999999999999975432 111121111111       111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                               ........++|..|+..+|.+|.+..|+++.
T Consensus       243 -------------------------~~is~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  243 -------------------------STISGGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             -------------------------cccChhHHHHHHHHhccCccccccHHHHhhh
Confidence                                     1233356799999999999999999998763

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=4.8e-37  Score=289.76  Aligned_cols=164  Identities=26%  Similarity=0.263  Sum_probs=142.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+....  ......+.+|+.+++.++||||+++             
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            4578999999999999999999999899999999987432  2334678889999999999999876             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++....
T Consensus        95 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDikp~Nill~~~~~~kl~Dfg~~~~~~~  171 (355)
T cd07874          95 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  171 (355)
T ss_pred             ceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEECCCCCEEEeeCcccccCCC
Confidence                                       236789999999999999   99999999999999999999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      .     .......+|..|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       172 ~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  220 (355)
T cd07874         172 S-----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPG  220 (355)
T ss_pred             c-----cccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            2     122345689999999999998999999999999999999999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.5e-37  Score=282.93  Aligned_cols=213  Identities=21%  Similarity=0.232  Sum_probs=164.6

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .|++.+.||+|+||.||+|.+..+++.||+|.+....   ......+.+|+.+++.++|+||+++               
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            3778899999999999999999999999999986432   2223457889999999999999876               


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.++|+|||++....... 
T Consensus        81 ~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~-  156 (285)
T cd05631          81 IMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRER---IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE-  156 (285)
T ss_pred             ecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCC-
Confidence                                    347789999999999999   9999999999999999999999999997643221 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||..|+|||++.+..++.++|||||||++|+|++|+.||....... .....             +..+.
T Consensus       157 ----~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~-~~~~~-------------~~~~~  218 (285)
T cd05631         157 ----TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERV-KREEV-------------DRRVK  218 (285)
T ss_pred             ----eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcch-hHHHH-------------HHHhh
Confidence                1223568999999999999999999999999999999999999997532211 00010             00000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                      ....               .........+.+|+.+||+.||.+||+     ++++++
T Consensus       219 ~~~~---------------~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~  260 (285)
T cd05631         219 EDQE---------------EYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQ  260 (285)
T ss_pred             cccc---------------cCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhc
Confidence            0000               000022335789999999999999997     677765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=3.8e-37  Score=284.21  Aligned_cols=226  Identities=20%  Similarity=0.292  Sum_probs=167.1

Q ss_pred             cCCCCccccceecCceEEEEEEECC----------------CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHH
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL----------------NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVR  133 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~----------------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~  133 (356)
                      .++|.+.+.||+|+||.||+|.+..                ++..||+|.+..... .....+.+|+.++.+++||||++
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            3578999999999999999998642                345799999875432 33457889999999999999987


Q ss_pred             H--------------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEE
Q 039228          134 F--------------------------------------------------------ISIAIDVASALDYLHHHCQELIL  157 (356)
Q Consensus       134 l--------------------------------------------------------~~i~~~i~~aL~~LH~~~~~~ii  157 (356)
                      +                                                        +.++.||+.||.|||+.+   |+
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---iv  160 (304)
T cd05096          84 LLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLN---FV  160 (304)
T ss_pred             EEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCC---cc
Confidence            5                                                        147889999999999999   99


Q ss_pred             ecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc--C
Q 039228          158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT--R  235 (356)
Q Consensus       158 H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt--g  235 (356)
                      ||||||+|||++.++.+||+|||+++.......  ........++..|+|||++.+..++.++||||||+++|||++  +
T Consensus       161 H~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~  238 (304)
T cd05096         161 HRDLATRNCLVGENLTIKIADFGMSRNLYAGDY--YRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCK  238 (304)
T ss_pred             ccCcchhheEEcCCccEEECCCccceecccCce--eEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccC
Confidence            999999999999999999999999975533221  112223445778999999988899999999999999999987  5


Q ss_pred             CCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC
Q 039228          236 RKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM  315 (356)
Q Consensus       236 ~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP  315 (356)
                      ..||......  .........+......    ...                   .....++..+.+++.+||+.||++||
T Consensus       239 ~~p~~~~~~~--~~~~~~~~~~~~~~~~----~~~-------------------~~~~~~~~~~~~li~~cl~~~p~~RP  293 (304)
T cd05096         239 EQPYGELTDE--QVIENAGEFFRDQGRQ----VYL-------------------FRPPPCPQGLYELMLQCWSRDCRERP  293 (304)
T ss_pred             CCCCCcCCHH--HHHHHHHHHhhhcccc----ccc-------------------cCCCCCCHHHHHHHHHHccCCchhCc
Confidence            6677643211  1111111100000000    000                   00113455788999999999999999


Q ss_pred             ChHHHHHHHHH
Q 039228          316 NVPNAVHDLQS  326 (356)
Q Consensus       316 s~~~vl~~L~~  326 (356)
                      |+.+|.+.|++
T Consensus       294 s~~~i~~~l~~  304 (304)
T cd05096         294 SFSDIHAFLTE  304 (304)
T ss_pred             CHHHHHHHHhC
Confidence            99999998863

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.1e-37  Score=289.86  Aligned_cols=169  Identities=22%  Similarity=0.288  Sum_probs=145.8

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..++|+++.+||+|+||.||+|+-+.||..+|+|++++..   ....+.+..|-.+|...++|+||++            
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            5689999999999999999999999999999999998653   3456778899999999999999998            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc--
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE--  187 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~--  187 (356)
                                               ..++.+++.|+..+|..|   +|||||||+|+|||..|++||+|||++.-+..  
T Consensus       219 iMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~g---yIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~  295 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLG---YIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKH  295 (550)
T ss_pred             EEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcC---cccccCChhheeecCCCCEeeccccccchhhhhh
Confidence                                     347788999999999999   99999999999999999999999999853211  


Q ss_pred             -------------C----CCCC------------------------ccCCCCccccccccchhhhcCCCCCCccchHhHH
Q 039228          188 -------------V----SNPT------------------------QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYG  226 (356)
Q Consensus       188 -------------~----~~~~------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG  226 (356)
                                   .    .+..                        .......+|||.|+|||++.+..|+..+|+||||
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG  375 (550)
T KOG0605|consen  296 RIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLG  375 (550)
T ss_pred             hhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHH
Confidence                         0    0000                        0112346799999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCc
Q 039228          227 ILLLEMVTRRKPIDF  241 (356)
Q Consensus       227 ~~l~elltg~~Pf~~  241 (356)
                      ||+||||.|.+||..
T Consensus       376 ~ImyEmLvGyPPF~s  390 (550)
T KOG0605|consen  376 CIMYEMLVGYPPFCS  390 (550)
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999999999974

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1e-36  Score=275.28  Aligned_cols=217  Identities=23%  Similarity=0.372  Sum_probs=171.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .+|.+.+.||+|+||.||+|.+..++..||+|.+... ......+.+|+.+++.++||||+++                 
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   84 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeC
Confidence            4588889999999999999999988999999998744 3335678899999999999999997                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.|++.||+|||+.+   ++||||||+||++++++.+||+|||++........  
T Consensus        85 ~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~--  159 (263)
T cd05052          85 TYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY--  159 (263)
T ss_pred             CCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCcEEeCCCcccccccccee--
Confidence                                  347789999999999999   99999999999999999999999999976543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......++..|+|||++.+..++.++|||||||++|||++ |..||....     .......         +......
T Consensus       160 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~-----~~~~~~~---------~~~~~~~  224 (263)
T cd05052         160 -TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID-----LSQVYEL---------LEKGYRM  224 (263)
T ss_pred             -eccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC-----HHHHHHH---------HHCCCCC
Confidence             11112333567999999999999999999999999999998 999986421     1111111         1111100


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ..                  ...++..+.+++.+||+.+|++||++.+++++|+.+
T Consensus       225 ~~------------------~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         225 ER------------------PEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CC------------------CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            00                  012345678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=4.5e-37  Score=289.80  Aligned_cols=217  Identities=21%  Similarity=0.307  Sum_probs=166.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|+..+.||+|+||.||+|++..+++.||||++..... .....+.+|+.+++.++|+||+++               
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  152 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLE  152 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEe
Confidence            3457888999999999999999998999999999864432 334678899999999999999987               


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++......    ...
T Consensus       153 ~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~----~~~  225 (353)
T PLN00034        153 FMDGGSLEGTHIADEQFLADVARQILSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILAQTM----DPC  225 (353)
T ss_pred             cCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEcccccceeccccc----ccc
Confidence                              358899999999999999   9999999999999999999999999998654321    112


Q ss_pred             CCccccccccchhhhcC-----CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          197 NGVRRTIGYTALDYDLG-----SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~-----~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ....||..|+|||++..     ...+.++|||||||++|||++|+.||......  .+.......            ...
T Consensus       226 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~--~~~~~~~~~------------~~~  291 (353)
T PLN00034        226 NSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQG--DWASLMCAI------------CMS  291 (353)
T ss_pred             cccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCc--cHHHHHHHH------------hcc
Confidence            34578999999998743     23456899999999999999999999732211  111111000            000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...               .....+...+.+++.+||+.||++|||+.+|++.
T Consensus       292 ~~~---------------~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        292 QPP---------------EAPATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             CCC---------------CCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            000               0001334467899999999999999999999874

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-38  Score=297.12  Aligned_cols=208  Identities=20%  Similarity=0.274  Sum_probs=172.0

Q ss_pred             cceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHHHH----------------------
Q 039228           79 LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS----------------------  136 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~----------------------  136 (356)
                      +||+|.||+||.|++..+....|||.+........+-+..|+.+.++|+|.|||++++                      
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            7999999999999999999999999998777777788999999999999999999832                      


Q ss_pred             ------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEcccccccccccCCCCCccCCC
Q 039228          137 ------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       137 ------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                        +.+||+.||.|||+..   |||||||-+|+|++ -.|.+||+|||.++.+...+    ....
T Consensus       662 LLrskWGPlKDNEstm~fYtkQILeGLkYLHen~---IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAgin----P~TE  734 (1226)
T KOG4279|consen  662 LLRSKWGPLKDNESTMNFYTKQILEGLKYLHENK---IVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGIN----PCTE  734 (1226)
T ss_pred             HHHhccCCCccchhHHHHHHHHHHHHhhhhhhcc---eeeccccCCcEEEeeccceEEecccccchhhccCC----cccc
Confidence                              6789999999999998   99999999999996 68999999999999876544    2345


Q ss_pred             CccccccccchhhhcCC--CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          198 GVRRTIGYTALDYDLGS--EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~--~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .+.||+.|||||++..+  .|+.++|||||||++.||.||++||-+.......               +..-.+-     
T Consensus       735 TFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAA---------------MFkVGmy-----  794 (1226)
T KOG4279|consen  735 TFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAA---------------MFKVGMY-----  794 (1226)
T ss_pred             ccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHh---------------hhhhcce-----
Confidence            58899999999999865  4889999999999999999999999754322111               1111110     


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                +..+.++.+...+..+++++|+.+||.+||+++++++.
T Consensus       795 ----------KvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  795 ----------KVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             ----------ecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccC
Confidence                      01123344666678899999999999999999999863

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=8.4e-37  Score=289.14  Aligned_cols=165  Identities=25%  Similarity=0.252  Sum_probs=142.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|.+.+.||+|+||.||+|.+..+++.||||++....  ....+.+.+|+.+++.++||||+++             
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            3578999999999999999999999999999999987432  3344678899999999999999876             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+++   |+||||||+||+++.++.+||+|||+++....
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~  178 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  178 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEECCCCcEEEEeCCCccccCC
Confidence                                       236789999999999999   99999999999999999999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      .     .......+|..|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       179 ~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  228 (364)
T cd07875         179 S-----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  228 (364)
T ss_pred             C-----CcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence            2     1223356799999999999999999999999999999999999999743

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=7.1e-37  Score=290.68  Aligned_cols=221  Identities=22%  Similarity=0.272  Sum_probs=167.8

Q ss_pred             cCCCCccccceecCceEEEEEEE-----CCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRFI--------  135 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~--------  135 (356)
                      .++|++.+.||+|+||.||+|.+     ..++..||||+++... ....+.+.+|+.++..+ +||||++++        
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~  113 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGP  113 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCc
Confidence            45699999999999999999974     3456789999986432 23346788999999999 899998752        


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          136 --------------------------------------------------------------------------------  135 (356)
Q Consensus       136 --------------------------------------------------------------------------------  135 (356)
                                                                                                      
T Consensus       114 ~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (375)
T cd05104         114 TLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGS  193 (375)
T ss_pred             ceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccce
Confidence                                                                                            


Q ss_pred             ------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          136 ------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       136 ------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                              .++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++....... 
T Consensus       194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~-  269 (375)
T cd05104         194 YIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDIRNDSN-  269 (375)
T ss_pred             ecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCchhhEEEECCCcEEEecCccceeccCccc-
Confidence                                    25679999999999999   99999999999999999999999999976543221 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                       ........++..|+|||++.+..++.++|||||||++|||++ |..||....... .+...            +.....
T Consensus       270 -~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~-~~~~~------------~~~~~~  335 (375)
T cd05104         270 -YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDS-KFYKM------------IKEGYR  335 (375)
T ss_pred             -ccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchH-HHHHH------------HHhCcc
Confidence             111222344667999999999999999999999999999998 899986432211 11111            111100


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ....                  ...+..+.+|+.+||+.||++|||+.+|++.|++.
T Consensus       336 ~~~~------------------~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         336 MLSP------------------ECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             CCCC------------------CCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence            0000                  01233578999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=7.1e-37  Score=279.11  Aligned_cols=219  Identities=21%  Similarity=0.325  Sum_probs=170.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCC-----eEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNR-----AVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~-----~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ++|++.+.||+|+||.||+|.....+     ..||+|.+..... .....+.+|+.+++.++||||+++           
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            46899999999999999999986554     7899999864432 334568899999999999999875           


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC
Q 039228          135 ------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL  172 (356)
Q Consensus       135 ------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~  172 (356)
                                                                +.++.+++.||.|||+.+   ++|+||||+||++++++
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nil~~~~~  161 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH---FVHRDLAARNCLVGEGL  161 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccccceEEEcCCC
Confidence                                                      147889999999999999   99999999999999999


Q ss_pred             ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHH
Q 039228          173 FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       173 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~  251 (356)
                      .++|+|||+++.......  ........+++.|+|||++.+..++.++|||||||++|||++ |..||......  ....
T Consensus       162 ~~~L~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~--~~~~  237 (283)
T cd05048         162 TVKISDFGLSRDIYSADY--YRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQ--EVIE  237 (283)
T ss_pred             cEEECCCcceeecccccc--ccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHH
Confidence            999999999975432211  112233456788999999988899999999999999999998 99998643211  1111


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                                  .+......                  ..+..++..+.+|+.+||+.||++||++++|++.|+++
T Consensus       238 ------------~i~~~~~~------------------~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         238 ------------MIRSRQLL------------------PCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             ------------HHHcCCcC------------------CCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence                        11100000                  00124556789999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=5e-37  Score=291.58  Aligned_cols=222  Identities=23%  Similarity=0.278  Sum_probs=168.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l---------  134 (356)
                      .++|++.+.||+|+||.||+|++...     +..||+|.+.... ......+.+|+.+++.+ +|+||+++         
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~  116 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGP  116 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCC
Confidence            45799999999999999999986433     3579999997543 23345688999999999 89999875         


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          135 --------------------------------------------------------------------------------  134 (356)
Q Consensus       135 --------------------------------------------------------------------------------  134 (356)
                                                                                                      
T Consensus       117 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (374)
T cd05106         117 VLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSD  196 (374)
T ss_pred             eEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccccc
Confidence                                                                                            


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        +.++.||+.||.|||+.+   |+||||||+|||+++++.++|+|||+++.......  ....
T Consensus       197 ~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g---iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~--~~~~  271 (374)
T cd05106         197 SKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKN---CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSN--YVVK  271 (374)
T ss_pred             ccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---EEeccCchheEEEeCCCeEEEeeceeeeeccCCcc--eeec
Confidence                              125678999999999999   99999999999999999999999999976533221  1112


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      ....++..|+|||++.+..++.++|||||||++|||++ |+.||....... .+...            +......... 
T Consensus       272 ~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-~~~~~------------~~~~~~~~~~-  337 (374)
T cd05106         272 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-KFYKM------------VKRGYQMSRP-  337 (374)
T ss_pred             cCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-HHHHH------------HHcccCccCC-
Confidence            22335678999999998899999999999999999997 999997432211 11111            1110000000 


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                                       ...+..+.+++.+||+.||++|||+.+|+++|+++.
T Consensus       338 -----------------~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         338 -----------------DFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             -----------------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence                             012335789999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=2.1e-36  Score=282.75  Aligned_cols=162  Identities=24%  Similarity=0.346  Sum_probs=141.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||++++..++..||+|.+..... ...+.+.+|+.++++++||||+++               
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            4689999999999999999999999999999999875432 334678999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                            ..++.+++.||.|||+. +   |+||||||+||+++.++.++|+|||++......   
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---  157 (331)
T cd06649          84 HMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQ---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---  157 (331)
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCC---EEcCCCChhhEEEcCCCcEEEccCccccccccc---
Confidence                                  35778999999999985 5   999999999999999999999999998754321   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         ......|+..|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       158 ---~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         158 ---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             ---ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence               12335689999999999998999999999999999999999999964

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=9.2e-37  Score=279.07  Aligned_cols=208  Identities=20%  Similarity=0.243  Sum_probs=163.3

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccCccc---hHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA---SKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      ..||+|++|.||+|.+.  |+.||||.+.......   .+.+.+|+.+|++++||||+++                    
T Consensus        26 ~~i~~g~~~~v~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey  103 (283)
T PHA02988         26 VLIKENDQNSIYKGIFN--NKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEY  103 (283)
T ss_pred             eEEeeCCceEEEEEEEC--CEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEe
Confidence            57899999999999984  7899999997543322   4667899999999999999986                    


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                           +.++.+++.||.|||+. +   ++||||||+||+++.++.+||+|||+++.....    
T Consensus       104 ~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~----  176 (283)
T PHA02988        104 CTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTN---KPYKNLTSVSFLVTENYKLKIICHGLEKILSSP----  176 (283)
T ss_pred             CCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCC---CCCCcCChhhEEECCCCcEEEcccchHhhhccc----
Confidence                                 44778999999999984 6   889999999999999999999999999754321    


Q ss_pred             ccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          193 QSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .....++..|+|||++.+  ..++.++|||||||++|||++|+.||.....     .......        +.....
T Consensus       177 ---~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~-----~~~~~~i--------~~~~~~  240 (283)
T PHA02988        177 ---PFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT-----KEIYDLI--------INKNNS  240 (283)
T ss_pred             ---cccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH-----HHHHHHH--------HhcCCC
Confidence               123457889999999976  6789999999999999999999999974321     1111100        000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      ..                  .+..++..+.+++.+||+.||++|||+++|++.|+.+.
T Consensus       241 ~~------------------~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        241 LK------------------LPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             CC------------------CCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            00                  00134556889999999999999999999999998764

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=1.2e-36  Score=288.87  Aligned_cols=238  Identities=20%  Similarity=0.193  Sum_probs=168.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|+||.||+|.+..+++.||||.+...  .....+.+.+|+.+++.++||||+++                
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            478899999999999999999989999999998643  22334678899999999999999876                


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++......
T Consensus        81 lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~  157 (372)
T cd07853          81 VVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDE  157 (372)
T ss_pred             EEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHHEEECCCCCEEeccccceeecccCc
Confidence                                     236789999999999999   9999999999999999999999999997643221


Q ss_pred             CCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh--
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN--  266 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~--  266 (356)
                         ........++..|+|||++.+. .++.++|||||||++|||++|+.||...... ..+.......-.....++..  
T Consensus       158 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~g~~~~~~~~~~~  233 (372)
T cd07853         158 ---SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPI-QQLDLITDLLGTPSLEAMRSAC  233 (372)
T ss_pred             ---cccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHcCCCCHHHHHHhh
Confidence               1122334678899999998774 4789999999999999999999999743221 11111111111111111100  


Q ss_pred             ----hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          267 ----LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       267 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                          ..+.....    ..+......  .........+.+|+.+||+.||++|||+.+++..
T Consensus       234 ~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         234 EGARAHILRGPH----KPPSLPVLY--TLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HHHHHHHHhCCC----CCCchHHhc--ccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence                00000000    000000000  0001223467899999999999999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=4.7e-37  Score=286.93  Aligned_cols=210  Identities=20%  Similarity=0.165  Sum_probs=165.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.++++++||||+++             
T Consensus        17 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   96 (329)
T PTZ00263         17 LSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFL   96 (329)
T ss_pred             chheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEE
Confidence            467999999999999999999999999999999987432   2334568899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....  
T Consensus        97 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~--  171 (329)
T PTZ00263         97 LEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKD---IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR--  171 (329)
T ss_pred             EcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEECCCCCEEEeeccCceEcCCC--
Confidence                                    336789999999999999   999999999999999999999999999755321  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                           .....||+.|+|||++.+..++.++|||||||++|+|++|..||.....     .......        ....+.
T Consensus       172 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~-----~~~~~~i--------~~~~~~  233 (329)
T PTZ00263        172 -----TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP-----FRIYEKI--------LAGRLK  233 (329)
T ss_pred             -----cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH-----HHHHHHH--------hcCCcC
Confidence                 1235689999999999999999999999999999999999999963211     1111110        000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~~  323 (356)
                        .+                  ......+.+++.+||+.||.+||+     +.+++..
T Consensus       234 --~p------------------~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        234 --FP------------------NWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             --CC------------------CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence              00                  012234679999999999999997     5666643

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=5.3e-37  Score=285.89  Aligned_cols=205  Identities=20%  Similarity=0.219  Sum_probs=160.6

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.++++++||||+++                    
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999999999999999997532   2334567889999999999999986                    


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.||+.||+|||+.+   |+||||||+||+++.++.+||+|||+++.....    .....
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~----~~~~~  153 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCD---VVYRDLKLENLMLDKDGHIKITDFGLCKEGISD----GATMK  153 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEeeCCCCcccccC----CCccc
Confidence                             347789999999999999   999999999999999999999999998743221    11223


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...||+.|+|||++.+..++.++|||||||++|||++|..||....     ........            ......   
T Consensus       154 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~-----~~~~~~~~------------~~~~~~---  213 (323)
T cd05571         154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD-----HEKLFELI------------LMEEIR---  213 (323)
T ss_pred             ceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCC-----HHHHHHHH------------HcCCCC---
Confidence            4678999999999999999999999999999999999999996321     11111110            000000   


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                                   .+......+.+++.+||+.||++||     ++.++++
T Consensus       214 -------------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         214 -------------FPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             -------------CCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence                         0002233578999999999999999     7888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2.3e-36  Score=275.62  Aligned_cols=223  Identities=20%  Similarity=0.292  Sum_probs=169.6

Q ss_pred             CCCCccccceecCceEEEEEEECCCCe----EEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRA----VVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~----~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|++.+.||.|+||.||+|.+..++.    .+++|.+..... .....+..|+..+++++||||+++            
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i   86 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLV   86 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEE
Confidence            468889999999999999999876655    477777753322 223567788889999999999986            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.||+.||.|||+.+   ++||||||+||++++++.+||+|||+++......
T Consensus        87 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~  163 (279)
T cd05111          87 TQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPDD  163 (279)
T ss_pred             EEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEEcCCccceeccCCC
Confidence                                     458889999999999999   9999999999999999999999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .  ........++..|++||++.+..++.++||||||+++|||++ |..||......  ...            +++...
T Consensus       164 ~--~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~--~~~------------~~~~~~  227 (279)
T cd05111         164 K--KYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPH--EVP------------DLLEKG  227 (279)
T ss_pred             c--ccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHH------------HHHHCC
Confidence            1  112233456778999999998899999999999999999998 99998643211  111            111110


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ......                  ..+...+.+++.+||..||++|||+.++++.|..+.+.-
T Consensus       228 ~~~~~~------------------~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~~  272 (279)
T cd05111         228 ERLAQP------------------QICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARDP  272 (279)
T ss_pred             CcCCCC------------------CCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhCC
Confidence            000000                  012335678999999999999999999999998876543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=2.1e-36  Score=273.52  Aligned_cols=221  Identities=20%  Similarity=0.296  Sum_probs=172.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|+...+++.||||.+....   ......+.+|+.+++.++||||+++              
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            57999999999999999999999899999999876422   2334568899999999999999987              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence                                       346789999999999999   99999999999999999999999999876543


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..    .......++..|+|||.+.+..++.++|+||||+++|+|++|..||......   ...+...         +..
T Consensus       159 ~~----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~---~~~~~~~---------~~~  222 (267)
T cd08228         159 KT----TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LFSLCQK---------IEQ  222 (267)
T ss_pred             hh----HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccccc---HHHHHHH---------Hhc
Confidence            21    1122345788999999998888999999999999999999999998532211   1111111         000


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      ......                 ........+.+++.+||+.+|++||++.+|++.|+.+.
T Consensus       223 ~~~~~~-----------------~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         223 CDYPPL-----------------PTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             CCCCCC-----------------ChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            000000                 00123346789999999999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=6.3e-37  Score=296.59  Aligned_cols=235  Identities=21%  Similarity=0.175  Sum_probs=165.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|....+++.||||.+....    ....+|+.+|+.++||||+++               
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            4567999999999999999999999899999999885432    234579999999999999863               


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEcccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFE  180 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg  180 (356)
                                                       ..++.||+.||.|||+.+   |+||||||+|||++.++ .+||+|||
T Consensus       140 ~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~---IiHrDLKp~NILl~~~~~~vkL~DFG  216 (440)
T PTZ00036        140 IFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKF---ICHRDLKPQNLLIDPNTHTLKLCDFG  216 (440)
T ss_pred             eEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCcCHHHEEEcCCCCceeeeccc
Confidence                                             225679999999999999   99999999999999654 79999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +++.+....     ......||+.|+|||++.+. .++.++|||||||++|||++|.+||...... ..+..........
T Consensus       217 la~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~-~~~~~i~~~~~~p  290 (440)
T PTZ00036        217 SAKNLLAGQ-----RSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSV-DQLVRIIQVLGTP  290 (440)
T ss_pred             cchhccCCC-----CcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCC
Confidence            998654321     12235678999999998764 6899999999999999999999999743221 1122221111111


Q ss_pred             chHHH--hhhhhccccccccccccchhh-hhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          260 RVMDI--VNLVLLNDNKVLAGTNSNMLR-KTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       260 ~~~~~--~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ....+  ..+....      ...+.... ......+...+..+.+|+.+||..||.+|||+.++++.
T Consensus       291 ~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        291 TEDQLKEMNPNYAD------IKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             CHHHHHHhchhhhc------ccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence            11110  0000000      00000000 00000001233467899999999999999999999843

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=8.4e-37  Score=299.44  Aligned_cols=218  Identities=19%  Similarity=0.218  Sum_probs=171.2

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ...++|.+.+.||+|+||.||+|++..+++.||||++....  ......+.+|+.++..++|+||+++            
T Consensus        29 ~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         29 EQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNP  108 (496)
T ss_pred             ccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCc
Confidence            34578999999999999999999999999999999987542  2334567889999999999988752            


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEc
Q 039228          135 -------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIG  177 (356)
Q Consensus       135 -------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~  177 (356)
                                                           ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~---IiHrDLKP~NILl~~~~~vkL~  185 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKH---MIHRDIKSANILLCSNGLVKLG  185 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEeCCCCEEEE
Confidence                                                 236789999999999999   9999999999999999999999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF  257 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~  257 (356)
                      |||+++.......  ........||+.|+|||++.+..++.++|||||||++|||++|+.||...     .......   
T Consensus       186 DFGls~~~~~~~~--~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~-----~~~~~~~---  255 (496)
T PTZ00283        186 DFGFSKMYAATVS--DDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGE-----NMEEVMH---  255 (496)
T ss_pred             ecccCeecccccc--ccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC-----CHHHHHH---
Confidence            9999986543221  11223467899999999999999999999999999999999999999632     1111111   


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                               ..+......               .+...+..+.+++..||+.||.+||++.+++..
T Consensus       256 ---------~~~~~~~~~---------------~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        256 ---------KTLAGRYDP---------------LPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             ---------HHhcCCCCC---------------CCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence                     111111000               001234467899999999999999999999864

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.3e-36  Score=277.58  Aligned_cols=233  Identities=21%  Similarity=0.302  Sum_probs=170.7

Q ss_pred             CCccccceecCceEEEEEEE----CCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      |++.+.||+|+||+||++..    ..++..||+|.+..... .....+.+|+.+++.++||||+++              
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            38889999999999988754    34578999999875432 334678899999999999999986              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              +.++.+++.||.|||+.+   |+||||||+||+++.++.++|+|||+++.......
T Consensus        86 v~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~  162 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHE  162 (283)
T ss_pred             EecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccChheEEEcCCCcEEEeecccccccCCcch
Confidence                                    457889999999999999   99999999999999999999999999986543221


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l  269 (356)
                      . ........++..|+|||.+.+..++.++||||||+++|+|++|..||.................. ...+.+.++...
T Consensus       163 ~-~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (283)
T cd05080         163 Y-YRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGM  241 (283)
T ss_pred             h-hccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCC
Confidence            1 11112233466799999998888999999999999999999999998643221111110000000 011111121111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      ...                  .+..++..+.+++..||+.+|++|||+++|++.|+.+.
T Consensus       242 ~~~------------------~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         242 RLP------------------CPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             CCC------------------CCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            100                  01134557899999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1.4e-36  Score=275.12  Aligned_cols=218  Identities=19%  Similarity=0.319  Sum_probs=168.2

Q ss_pred             CCCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ++|++.+.||+|+||.||+|.+.   ..+..||+|.++.... .....+.+|+.++++++||||+++             
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            46899999999999999999875   3467899999875432 334578899999999999999986             


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.|++.||+|||+.+   ++||||||+||+++.++.++++|||.+.......
T Consensus        85 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~---iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~  161 (266)
T cd05064          85 TEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMG---YVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEA  161 (266)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeeccccHhhEEEcCCCcEEECCCcccccccccc
Confidence                                     568889999999999999   9999999999999999999999999876432211


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                         ........++..|+|||++.+..++.++|||||||++||+++ |..||......  ..........           
T Consensus       162 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~--~~~~~~~~~~-----------  225 (266)
T cd05064         162 ---IYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQ--DVIKAVEDGF-----------  225 (266)
T ss_pred             ---hhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHH--HHHHHHHCCC-----------
Confidence               111112334678999999999999999999999999999775 99999643211  1111110000           


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ...                   .+..++..+.+++..||+.+|.+||++.+|++.|..+
T Consensus       226 ~~~-------------------~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         226 RLP-------------------APRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             CCC-------------------CCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            000                   0113455788999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=2e-36  Score=276.81  Aligned_cols=236  Identities=23%  Similarity=0.252  Sum_probs=164.3

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhc---CCCChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNI---CHRNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l-------------  134 (356)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+....  ......+.+|+.+++.+   +||||+++             
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4888999999999999999999999999999987432  22234556777777665   79999875             


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++..
T Consensus        81 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~kl~dfg~~~~  157 (288)
T cd07863          81 KVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARI  157 (288)
T ss_pred             eEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccCcccc
Confidence                                          347789999999999999   99999999999999999999999999976


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      .....     ......++..|+|||++.+..++.++|||||||++|+|++|.+||......+ .+..............+
T Consensus       158 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~-~~~~~~~~~~~~~~~~~  231 (288)
T cd07863         158 YSCQM-----ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGLPPEDDW  231 (288)
T ss_pred             ccCcc-----cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHH-HHHHHHHHhCCCChhhC
Confidence            53221     1223567889999999998899999999999999999999999986432211 11111111100000000


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      - ...................    .........+.+++.+||+.||++|||+.+++.
T Consensus       232 ~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         232 P-RDVTLPRGAFSPRGPRPVQ----SVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             c-ccccccccccCCCCCCchH----HhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0 0000000000000000000    001123446789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=2.6e-36  Score=278.65  Aligned_cols=242  Identities=21%  Similarity=0.333  Sum_probs=179.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCe----EEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRA----VVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~----~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .++|+..+.||+|+||.||+|.+..++.    .||+|.+..... .....+.+|+.+++.++||||+++           
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~   85 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQL   85 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCcee
Confidence            3568889999999999999999876665    578888764432 223468899999999999999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+|+||||+||+++.++.+||+|||+++.....
T Consensus        86 v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~  162 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERR---LVHRDLAARNVLVKSPNHVKITDFGLARLLEGD  162 (303)
T ss_pred             eehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcC---eeccccccceeeecCCCceEEccccccccccCc
Confidence                                      457789999999999999   999999999999999999999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..  ........++..|+|||++.+..++.++||||||+++|||++ |..||......  ....+            +..
T Consensus       163 ~~--~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~--~~~~~------------~~~  226 (303)
T cd05110         163 EK--EYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTR--EIPDL------------LEK  226 (303)
T ss_pred             cc--ccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH------------HHC
Confidence            21  111223345678999999998899999999999999999997 89998643211  11111            110


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccccCCcCCccc
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRAPK  347 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~~~~~~~~~~  347 (356)
                      .....                  .+..+...+.+++..||..+|++||++.+|++.|.++.+.......+..-.+...|+
T Consensus       227 ~~~~~------------------~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  288 (303)
T cd05110         227 GERLP------------------QPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARDPQRYLVIQGDDRMKLPS  288 (303)
T ss_pred             CCCCC------------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhchhhheeeccCCcCCCCC
Confidence            00000                  001233457899999999999999999999999999876654444444444444444


Q ss_pred             cc
Q 039228          348 LK  349 (356)
Q Consensus       348 ~~  349 (356)
                      ..
T Consensus       289 ~~  290 (303)
T cd05110         289 PN  290 (303)
T ss_pred             Cc
Confidence            43

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.7e-37  Score=286.77  Aligned_cols=217  Identities=18%  Similarity=0.211  Sum_probs=168.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....   ......+..|+.++..++||||+++              
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            46999999999999999999999999999999997542   2234568889999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.....    
T Consensus        81 e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~----  153 (333)
T cd05600          81 EYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELG---YIHRDLKPENFLIDASGHIKLTDFGLSKGIVT----  153 (333)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEEEeCcCCccccc----
Confidence                                   347789999999999999   99999999999999999999999999975432    


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......||+.|+|||++.+..++.++|||||||++|||++|..||....... ..... ... ..    .+......
T Consensus       154 ---~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~~i-~~~-~~----~~~~~~~~  223 (333)
T cd05600         154 ---YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNE-TWENL-KYW-KE----TLQRPVYD  223 (333)
T ss_pred             ---ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHH-HHHHH-Hhc-cc----cccCCCCC
Confidence               2234678999999999999999999999999999999999999997432111 00000 000 00    00000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .                  ........+.+++.+||..+|.+||++.++++.
T Consensus       224 ~------------------~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         224 D------------------PRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             c------------------cccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            0                  001234467899999999999999999999865

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-38  Score=293.05  Aligned_cols=219  Identities=21%  Similarity=0.287  Sum_probs=175.7

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      |+...+....++-||+|+.|.||+|+..  ++.||||.++..       -..+|+-|++|+||||+.|            
T Consensus       119 WeiPFe~IsELeWlGSGaQGAVF~Grl~--netVAVKKV~el-------kETdIKHLRkLkH~NII~FkGVCtqsPcyCI  189 (904)
T KOG4721|consen  119 WEIPFEEISELEWLGSGAQGAVFLGRLH--NETVAVKKVREL-------KETDIKHLRKLKHPNIITFKGVCTQSPCYCI  189 (904)
T ss_pred             ccCCHHHhhhhhhhccCcccceeeeecc--CceehhHHHhhh-------hhhhHHHHHhccCcceeeEeeeecCCceeEE
Confidence            3334444556778999999999999987  789999997522       2347889999999999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               .+|..+||.|+.|||.+.   |||||||.-||||..+..+||+|||.++..... 
T Consensus       190 iMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hK---IIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~-  265 (904)
T KOG4721|consen  190 IMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHK---IIHRDLKSPNILISYDDVVKISDFGTSKELSDK-  265 (904)
T ss_pred             eeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhh---HhhhccCCCceEeeccceEEeccccchHhhhhh-
Confidence                                     457788999999999998   999999999999999999999999999865432 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          .....+.||..|||||++.+.+.+.|+|||||||+|||||||..||.........+     ..-. +       . 
T Consensus       266 ----STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAIIw-----GVGs-N-------s-  327 (904)
T KOG4721|consen  266 ----STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAIIW-----GVGS-N-------S-  327 (904)
T ss_pred             ----hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeEE-----eccC-C-------c-
Confidence                33445889999999999999999999999999999999999999997533221110     0000 0       0 


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                                       .....+..|+..+.-|+.+||+..|..||++.+++..|+-....+..
T Consensus       328 -----------------L~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~HldIa~pell~  374 (904)
T KOG4721|consen  328 -----------------LHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLHLDIASPELLS  374 (904)
T ss_pred             -----------------ccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHHHhhcCHHHhc
Confidence                             11222347888899999999999999999999999999887766543

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-38  Score=266.04  Aligned_cols=215  Identities=19%  Similarity=0.218  Sum_probs=172.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++.|++.+.||+|.|+.||++.+..+|+.+|+|+++..  .....+.+.+|+++-+.|+||||+++             
T Consensus         9 f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv   88 (355)
T KOG0033|consen    9 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   88 (355)
T ss_pred             cchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence            356799999999999999999999999999999998643  34466889999999999999999998             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEccccccccccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a~~~~~  187 (356)
                                              -.++.||+.||.|+|.++   |||||+||+|+++.+   .--+||+|||+|..+..
T Consensus        89 Fe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~---IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~  165 (355)
T KOG0033|consen   89 FDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNG---IVHRDLKPENLLLASKAKGAAVKLADFGLAIEVND  165 (355)
T ss_pred             EecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ceeccCChhheeeeeccCCCceeecccceEEEeCC
Confidence                                    126789999999999999   999999999999953   44689999999987652


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                           .....+..||++|||||++...+|+..+|||+.||+||-++.|.+||.+...                 .++...
T Consensus       166 -----g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~-----------------~rlye~  223 (355)
T KOG0033|consen  166 -----GEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----------------HRLYEQ  223 (355)
T ss_pred             -----ccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccH-----------------HHHHHH
Confidence                 3456678999999999999999999999999999999999999999964211                 122222


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAV  321 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl  321 (356)
                      .+.+.++.        ....|.    ...++..+|+.+||..||.+|.|+.|.+
T Consensus       224 I~~g~yd~--------~~~~w~----~is~~Ak~LvrrML~~dP~kRIta~EAL  265 (355)
T KOG0033|consen  224 IKAGAYDY--------PSPEWD----TVTPEAKSLIRRMLTVNPKKRITADEAL  265 (355)
T ss_pred             HhccccCC--------CCcccC----cCCHHHHHHHHHHhccChhhhccHHHHh
Confidence            22222211        111111    3334557999999999999999998765

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=1.7e-36  Score=284.08  Aligned_cols=224  Identities=22%  Similarity=0.261  Sum_probs=169.8

Q ss_pred             hcCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHHH-------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRFI-------  135 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~-------  135 (356)
                      ..++|++.+.||.|+||.||+|....     +++.||+|++.... ....+.+..|+.++.++ +|+||++++       
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~   84 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG   84 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC
Confidence            34579999999999999999997543     35789999987432 22345678899999999 799998762       


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          136 --------------------------------------------------------------------------------  135 (356)
Q Consensus       136 --------------------------------------------------------------------------------  135 (356)
                                                                                                      
T Consensus        85 ~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (337)
T cd05054          85 GPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDE  164 (337)
T ss_pred             CCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhH
Confidence                                                                                            


Q ss_pred             ------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccc
Q 039228          136 ------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI  203 (356)
Q Consensus       136 ------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~  203 (356)
                                  .++.||+.||.|||+.+   |+||||||+||+++.++.++|+|||++..+.....  ........++.
T Consensus       165 ~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~--~~~~~~~~~~~  239 (337)
T cd05054         165 LYKEPLTLEDLISYSFQVARGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPD--YVRKGDARLPL  239 (337)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEeCCCcEEEeccccchhcccCcc--hhhccCCCCCc
Confidence                        24578999999999998   99999999999999999999999999986533221  11222345567


Q ss_pred             cccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccc
Q 039228          204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSN  282 (356)
Q Consensus       204 ~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  282 (356)
                      .|+|||++.+..++.++|||||||++|||++ |..||....... .+...            +.......          
T Consensus       240 ~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~-~~~~~------------~~~~~~~~----------  296 (337)
T cd05054         240 KWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE-EFCRR------------LKEGTRMR----------  296 (337)
T ss_pred             cccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH-HHHHH------------HhccCCCC----------
Confidence            8999999999999999999999999999998 999986422111 11110            00000000          


Q ss_pred             hhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          283 MLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       283 ~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                              .+......+.+++.+||+.+|++||++.+|++.|+.+.+
T Consensus       297 --------~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         297 --------APEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             --------CCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                    001233467899999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=2.4e-36  Score=276.78  Aligned_cols=223  Identities=22%  Similarity=0.347  Sum_probs=172.9

Q ss_pred             CCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+|.+.+.||+|+||.||++...     .++..+|+|.+........+.+.+|+.++++++||||+++            
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            46889999999999999999852     3456799999876555556789999999999999999986            


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEE
Q 039228          135 --------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHI  176 (356)
Q Consensus       135 --------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl  176 (356)
                                                            +.++.|++.||+|||+.+   ++||||||+||+++.++.++|
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~---i~H~dlkp~Nili~~~~~~kl  161 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI  161 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccCCcEEe
Confidence                                                  236789999999999999   999999999999999999999


Q ss_pred             cccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHH
Q 039228          177 GDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       177 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      +|||+++.......  ........++..|+|||++.+..++.++|||||||++|+|++ |..||.......  ...... 
T Consensus       162 ~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~--~~~~i~-  236 (288)
T cd05093         162 GDFGMSRDVYSTDY--YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE--VIECIT-  236 (288)
T ss_pred             ccCCccccccCCce--eecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHH-
Confidence            99999975432211  112223445778999999998889999999999999999998 999986432111  101000 


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                        .+.        ....                   ...++..+.+++.+||+.||.+|||+.+|++.|+.+....
T Consensus       237 --~~~--------~~~~-------------------~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~  283 (288)
T cd05093         237 --QGR--------VLQR-------------------PRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKAS  283 (288)
T ss_pred             --cCC--------cCCC-------------------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence              000        0000                   0022345789999999999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=1.5e-36  Score=273.55  Aligned_cols=218  Identities=27%  Similarity=0.401  Sum_probs=173.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ...+|++.+.||.|+||.||+|.+.. +..+|+|.+..........+..|+.+++.++||||+++               
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            34569999999999999999999987 78999999986655556788999999999999999986               


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.+++.||.|||+.+   ++|+||+|+||++++++.+||+|||++........
T Consensus        83 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~  159 (261)
T cd05148          83 LMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQN---SIHRDLAARNILVGEDLVCKVADFGLARLIKEDVY  159 (261)
T ss_pred             ecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccCcceEEEcCCceEEEccccchhhcCCccc
Confidence                                    347789999999999999   99999999999999999999999999976533211


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          ......++..|++||.+.+..++.++||||||+++|+|++ |+.||......  .......            ...
T Consensus       160 ----~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~--~~~~~~~------------~~~  221 (261)
T cd05148         160 ----LSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNH--EVYDQIT------------AGY  221 (261)
T ss_pred             ----cccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHH--HHHHHHH------------hCC
Confidence                1123345678999999988889999999999999999998 89999643211  1111110            000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ...                  ....++..+.+++.+||+.||.+|||+.++++.|+.+
T Consensus       222 ~~~------------------~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         222 RMP------------------CPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             cCC------------------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence            000                  0013445678999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=2.7e-36  Score=274.94  Aligned_cols=223  Identities=23%  Similarity=0.346  Sum_probs=170.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCe----EEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRA----VVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~----~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++.    .||+|++..... .....+.+|+.+++.++||||+++           
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l   85 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQL   85 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEE
Confidence            4578999999999999999999866655    489999864432 334678899999999999999864           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+||++++++.+||+|||+++.....
T Consensus        86 ~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~  162 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVR---LVHRDLAARNVLVKSPNHVKITDFGLARLLDID  162 (279)
T ss_pred             EEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEEcCCCcEEECCCCceeecccc
Confidence                                      457889999999999999   999999999999999999999999999866432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ...  .......++..|+|||...+..++.++|||||||++|||++ |..||.....  ..+...            +..
T Consensus       163 ~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~------------~~~  226 (279)
T cd05109         163 ETE--YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPA--REIPDL------------LEK  226 (279)
T ss_pred             cce--eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHH------------HHC
Confidence            211  11122334678999999998889999999999999999998 9999864221  111111            111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ......                  ...+...+.+++.+||+.||+.||++.++++.|+.+...
T Consensus       227 ~~~~~~------------------~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         227 GERLPQ------------------PPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             CCcCCC------------------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence            100000                  012334678999999999999999999999999877543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-36  Score=281.52  Aligned_cols=201  Identities=22%  Similarity=0.217  Sum_probs=157.1

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ||+|+||.||+|.+..+++.||+|++...   .......+..|+.++.+++||||+++                      
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            69999999999999999999999998743   22334567889999999999999987                      


Q ss_pred             ---------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCc
Q 039228          135 ---------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV  199 (356)
Q Consensus       135 ---------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  199 (356)
                                     ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||+++......    ......
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~----~~~~~~  153 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLHKFN---VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDD----DKTNTF  153 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHeEECCCCcEEEEECcccccCccCC----Cccccc
Confidence                           347789999999999999   9999999999999999999999999997532211    122346


Q ss_pred             cccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccccc
Q 039228          200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGT  279 (356)
Q Consensus       200 ~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  279 (356)
                      .||+.|+|||++.+..++.++|||||||++|+|++|+.||....     ..........            ....     
T Consensus       154 ~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~-----~~~~~~~~~~------------~~~~-----  211 (312)
T cd05585         154 CGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN-----VNEMYRKILQ------------EPLR-----  211 (312)
T ss_pred             cCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC-----HHHHHHHHHc------------CCCC-----
Confidence            78999999999999999999999999999999999999996321     1111111111            0000     


Q ss_pred             ccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHH
Q 039228          280 NSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNA  320 (356)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~v  320 (356)
                                 .+......+.+++.+||+.||.+||++.++
T Consensus       212 -----------~~~~~~~~~~~li~~~L~~dp~~R~~~~~~  241 (312)
T cd05585         212 -----------FPDGFDRDAKDLLIGLLSRDPTRRLGYNGA  241 (312)
T ss_pred             -----------CCCcCCHHHHHHHHHHcCCCHHHcCCCCCH
Confidence                       001223356899999999999999865433

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.9e-37  Score=290.68  Aligned_cols=213  Identities=19%  Similarity=0.209  Sum_probs=174.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .+-|++++.||.|+.|.|-+|++..||+.+|||++.+..   ......+.+|+-+|+-+.|||++++             
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylv   90 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLV   90 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEE
Confidence            456999999999999999999999999999999997542   2334568899999999999999998             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.|+.|+|..+   |+||||||+|+|||..+++||+|||+|..-..   
T Consensus        91 lEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~---icHRDLKpENlLLd~~~nIKIADFGMAsLe~~---  164 (786)
T KOG0588|consen   91 LEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFN---ICHRDLKPENLLLDVKNNIKIADFGMASLEVP---  164 (786)
T ss_pred             EEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhc---ceeccCCchhhhhhcccCEeeeccceeecccC---
Confidence                                    458999999999999999   99999999999999999999999999975332   


Q ss_pred             CCccCCCCccccccccchhhhcCCCCC-CccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVS-TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                        .......+|.+.|.+||++.|.+|. .++||||+|||||.||||+.||++     .++.            .++...-
T Consensus       165 --gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdD-----dNir------------~LLlKV~  225 (786)
T KOG0588|consen  165 --GKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDD-----DNIR------------VLLLKVQ  225 (786)
T ss_pred             --CccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCC-----ccHH------------HHHHHHH
Confidence              2345568899999999999999985 789999999999999999999972     2332            2222222


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      .+.+..                +-+.+.+..+|+.+|+..||..|.|+.||++.-
T Consensus       226 ~G~f~M----------------Ps~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP  264 (786)
T KOG0588|consen  226 RGVFEM----------------PSNISSEAQDLLRRMLDVDPSTRITTEEILKHP  264 (786)
T ss_pred             cCcccC----------------CCcCCHHHHHHHHHHhccCccccccHHHHhhCc
Confidence            222211                113344567999999999999999999998753

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=4e-36  Score=272.49  Aligned_cols=217  Identities=20%  Similarity=0.380  Sum_probs=165.6

Q ss_pred             CCccccceecCceEEEEEEECCCCe--EEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRA--VVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      |.+.+.||+|+||.||+|.+..++.  .||+|.++..  .....+.+..|+.+++.++||||+++               
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence            3567889999999999999877654  6899988653  23345678899999999999999874               


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                        ..++.|++.||+|||+++   |+||||||+||+++.++.++|+|||
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKS---FIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhheEEcCCCCEEECCCC
Confidence                                              236778999999999998   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCC
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +++........  .......++..|++||+..+..++.++||||||+++|||++ |..||.....  ..+.....   .+
T Consensus       158 ~~~~~~~~~~~--~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~---~~  230 (272)
T cd05075         158 LSKKIYNGDYY--RQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVEN--SEIYDYLR---QG  230 (272)
T ss_pred             cccccCcccce--ecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHH---cC
Confidence            99865432211  11122345678999999998899999999999999999999 8899864211  11111100   00


Q ss_pred             chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          260 RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .        ....                   ...++..+.+++.+||+.||++|||+.+|++.|+.+
T Consensus       231 ~--------~~~~-------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         231 N--------RLKQ-------------------PPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             C--------CCCC-------------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            0        0000                   012334578999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-37  Score=302.96  Aligned_cols=224  Identities=21%  Similarity=0.314  Sum_probs=181.6

Q ss_pred             cCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      ..+....+.||+|.||.||+|+...     ....||||.++..... ..++|.+|+.+|..|+|||||+|          
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPL  564 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence            4456677899999999999998643     3478999999866555 67889999999999999999998          


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc
Q 039228          135 -----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF  173 (356)
Q Consensus       135 -----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~  173 (356)
                                                               +.|+.|||.|+.||-++.   +|||||...|+||.++..
T Consensus       565 ~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~---FVHRDLATRNCLVge~l~  641 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHH---FVHRDLATRNCLVGENLV  641 (774)
T ss_pred             EEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCc---ccccchhhhhceeccceE
Confidence                                                     569999999999999998   999999999999999999


Q ss_pred             eEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHH
Q 039228          174 AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNF  252 (356)
Q Consensus       174 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~  252 (356)
                      |||+|||+++..-...-  ........-...||+||.+..++++++||||||||+|||+++ |+.||.+....+  ..+.
T Consensus       642 VKIsDfGLsRdiYssDY--Yk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~E--VIe~  717 (774)
T KOG1026|consen  642 VKISDFGLSRDIYSSDY--YKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQE--VIEC  717 (774)
T ss_pred             EEecccccchhhhhhhh--hcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHH--HHHH
Confidence            99999999985432211  112223444778999999999999999999999999999999 999987543321  1111


Q ss_pred             HHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          253 ARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      +           -+..+.                   ..+++|+.++.+||..||+.+|.+||+++||-..|+......
T Consensus       718 i-----------~~g~lL-------------------~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  718 I-----------RAGQLL-------------------SCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQAS  766 (774)
T ss_pred             H-----------HcCCcc-------------------cCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcC
Confidence            1           111111                   223489999999999999999999999999999999876654

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=6.3e-36  Score=270.43  Aligned_cols=221  Identities=21%  Similarity=0.278  Sum_probs=172.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|....++..||||.+....   ......+.+|+.+++.++||||+++              
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            56889999999999999999998889999999886432   2234578899999999999999987              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence                                       346778999999999999   99999999999999999999999999876543


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ...    ......++..|+|||++.+..++.++|+||||+++|+|++|..||.....+   ........     .....+
T Consensus       159 ~~~----~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~-----~~~~~~  226 (267)
T cd08229         159 KTT----AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKKI-----EQCDYP  226 (267)
T ss_pred             CCc----ccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccch---HHHHhhhh-----hcCCCC
Confidence            221    122346788999999998888999999999999999999999998632211   11111100     000000


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      ...                     .......+.+++.+||+.||++|||+.+|++++.+..
T Consensus       227 ~~~---------------------~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         227 PLP---------------------SDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             CCC---------------------cccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            000                     0124446789999999999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.8e-36  Score=276.63  Aligned_cols=218  Identities=21%  Similarity=0.294  Sum_probs=166.6

Q ss_pred             CCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .+|.+.+.||.|+||.||+|.+..+     +..||+|.++..... ....+..|+.++..++||||+++           
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~   84 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS   84 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceE
Confidence            3478889999999999999987543     578999998754332 34568889999999999999865           


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC
Q 039228          135 ------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL  172 (356)
Q Consensus       135 ------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~  172 (356)
                                                                ..++.|++.||.|||+++   |+||||||+||++++++
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~g---i~H~dlkp~Nil~~~~~  161 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKL  161 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhheEecCCC
Confidence                                                      236679999999999999   99999999999999999


Q ss_pred             ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHH
Q 039228          173 FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       173 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~  251 (356)
                      .+||+|||+++.......  ........+++.|+|||.+.+..++.++|||||||++|||++ |..||.....     ..
T Consensus       162 ~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-----~~  234 (283)
T cd05091         162 NVKISDLGLFREVYAADY--YKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-----QD  234 (283)
T ss_pred             ceEecccccccccccchh--eeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH-----HH
Confidence            999999999876533221  111223445778999999988889999999999999999998 8888864211     11


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      .....        .+.... ..                  +..++..+.+++..||+.+|++||++++|+..|+.
T Consensus       235 ~~~~i--------~~~~~~-~~------------------~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         235 VIEMI--------RNRQVL-PC------------------PDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HHHHH--------HcCCcC-CC------------------CCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            11111        010000 00                  01344567899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.8e-36  Score=270.42  Aligned_cols=217  Identities=18%  Similarity=0.350  Sum_probs=166.0

Q ss_pred             CCccccceecCceEEEEEEECCC---CeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      |++.+.||+|+||.||+|....+   +..||+|.++...  ......+.+|+..++.++||||+++              
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            56788999999999999997653   4789999987542  2334578899999999999999875              


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                         ..++.|++.||.|||+.+   ++||||||+||++++++.+||+||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRN---FIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchheEEECCCCeEEECCc
Confidence                                               236789999999999998   999999999999999999999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCC
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      |+++........  .......++..|+|||++.+..++.++|||||||++|||++ |..||.....  .......     
T Consensus       158 g~~~~~~~~~~~--~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~--~~~~~~~-----  228 (273)
T cd05035         158 GLSKKIYSGDYY--RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN--HEIYDYL-----  228 (273)
T ss_pred             cceeeccccccc--cccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHH-----
Confidence            999865432211  11112234668999999988889999999999999999999 8899864221  1111110     


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                                ..+...               ..+..+...+.+++.+||+.||++|||+.+|++.|+.+
T Consensus       229 ----------~~~~~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         229 ----------RHGNRL---------------KQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             ----------HcCCCC---------------CCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                      000000               00113445678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.8e-36  Score=271.95  Aligned_cols=216  Identities=24%  Similarity=0.399  Sum_probs=168.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.... +..||+|.+.... ...+.+.+|+.+++.++|+||+++                
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~-~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNN-STKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY   82 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecC-CceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence            4579999999999999999999764 4779999876432 235678999999999999999986                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.+++.||+|||+.+   ++|+||||+||+++.++.++|+|||++........ 
T Consensus        83 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~-  158 (261)
T cd05072          83 MAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY-  158 (261)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEecCCCcEEECCCccceecCCCce-
Confidence                                   347789999999999998   99999999999999999999999999986543221 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        .......++..|+|||++.+..++.++|||||||++|+|++ |..||......  ...........            
T Consensus       159 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~~~~------------  222 (261)
T cd05072         159 --TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS--DVMSALQRGYR------------  222 (261)
T ss_pred             --eccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH--HHHHHHHcCCC------------
Confidence              11223345678999999988889999999999999999998 99998642211  11111110000            


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      ..                  ....++..+.+++.+||+.+|++||+++++++.|+.
T Consensus       223 ~~------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  260 (261)
T cd05072         223 MP------------------RMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDD  260 (261)
T ss_pred             CC------------------CCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            00                  001233457899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=4.9e-36  Score=273.00  Aligned_cols=218  Identities=26%  Similarity=0.381  Sum_probs=168.1

Q ss_pred             cCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|.+.+.||+|+||.||+|....     ++..||+|.+...... ..+.+.+|+.+++.++|+||+++          
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            3568899999999999999998743     3578999998755443 45689999999999999999987          


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc
Q 039228          135 -----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF  173 (356)
Q Consensus       135 -----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~  173 (356)
                                                               ..++.+++.||.|||+.+   ++||||||+||+++.++.
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~  160 (280)
T cd05049          84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH---FVHRDLATRNCLVGYDLV  160 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eeccccccceEEEcCCCe
Confidence                                                     125778999999999999   999999999999999999


Q ss_pred             eEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHH
Q 039228          174 AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNF  252 (356)
Q Consensus       174 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~  252 (356)
                      ++|+|||++........  ........++..|+|||++.+..++.++|||||||++|||++ |..||......  .....
T Consensus       161 ~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~--~~~~~  236 (280)
T cd05049         161 VKIGDFGMSRDVYTTDY--YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNE--EVIEC  236 (280)
T ss_pred             EEECCcccceecccCcc--eecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHH
Confidence            99999999875432211  111223345778999999999999999999999999999998 99998643211  11111


Q ss_pred             HHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          253 ARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      ...           .... ..                  ....+..+.+++.+||+.||++||++.+|++.|+
T Consensus       237 ~~~-----------~~~~-~~------------------~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~  279 (280)
T cd05049         237 ITQ-----------GRLL-QR------------------PRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ  279 (280)
T ss_pred             HHc-----------CCcC-CC------------------CCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence            110           0000 00                  0123346789999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-36  Score=284.72  Aligned_cols=217  Identities=22%  Similarity=0.240  Sum_probs=169.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|.+.+.||+|+||.||+|.+..+++.||||++....   ......+..|+.++..++||||+++              
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            46999999999999999999999999999999997432   2345678889999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC-
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN-  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-  190 (356)
                                             ..++.||+.||.|||+.+   |+||||||+||+++.++.+||+|||++........ 
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---iiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~  157 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLG---FIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDR  157 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEeecCCCCccCcccCcc
Confidence                                   347789999999999999   99999999999999999999999999976543320 


Q ss_pred             ------------------------CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC
Q 039228          191 ------------------------PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD  246 (356)
Q Consensus       191 ------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~  246 (356)
                                              ..........||+.|+|||++.+..++.++|||||||++|||++|+.||.....  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~--  235 (350)
T cd05573         158 EYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTL--  235 (350)
T ss_pred             cccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCH--
Confidence                                    001223346789999999999999999999999999999999999999974321  


Q ss_pred             ccHHHHHHHhCCCchHHHhh--hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-hHHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVN--LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-VPNAVHD  323 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-~~~vl~~  323 (356)
                         .....        .+..  ..+....                  .......+.+++.+|+. ||.+||+ +.++++.
T Consensus       236 ---~~~~~--------~i~~~~~~~~~p~------------------~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         236 ---QETYN--------KIINWKESLRFPP------------------DPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             ---HHHHH--------HHhccCCcccCCC------------------CCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence               11110        1111  0000000                  00123457889999997 9999999 9999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=3.3e-36  Score=281.09  Aligned_cols=206  Identities=22%  Similarity=0.245  Sum_probs=161.4

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      +.||+|+||.||++.+..+++.||+|++....   ......+.+|+.+++.++||||+++                    
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999999999999999997532   2334577889999999999999986                    


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++.....    .....
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~----~~~~~  153 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGK---IVYRDLKLENLMLDKDGHIKITDFGLCKEGITD----AATMK  153 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeEECCCCcEEEecCcCCccCCCc----ccccc
Confidence                             347889999999999999   999999999999999999999999998753221    11223


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|+.||.....     .......            +.....   
T Consensus       154 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~-----~~~~~~~------------~~~~~~---  213 (328)
T cd05593         154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKLFELI------------LMEDIK---  213 (328)
T ss_pred             cccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH-----HHHHHHh------------ccCCcc---
Confidence            45689999999999988999999999999999999999999964211     1111111            000000   


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVHD  323 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~~  323 (356)
                                   .+......+.+++.+||+.||.+||     ++.++++.
T Consensus       214 -------------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         214 -------------FPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             -------------CCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence                         0002233567899999999999997     88888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=5e-36  Score=275.63  Aligned_cols=226  Identities=21%  Similarity=0.278  Sum_probs=163.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccCccch-----------HHHHHHHHHHhhcCCCChHHH--
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQCQGAS-----------KSFMAECKALKNICHRNLVRF--  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~l~h~niv~l--  134 (356)
                      .++|++.+.||+|+||.||+|.+..+   +..+|+|+.........           .....+...+..+.|+|++++  
T Consensus        11 ~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   90 (294)
T PHA02882         11 GKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYG   90 (294)
T ss_pred             CCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEE
Confidence            46799999999999999999998877   67788887543322110           112233344556778877653  


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEE
Q 039228          135 --------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHI  176 (356)
Q Consensus       135 --------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl  176 (356)
                                                            ..++.|++.||.|||+.+   |+||||||+|||++.++.++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiHrDiKp~Nill~~~~~~~l  167 (294)
T PHA02882         91 CGSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHG---ISHGDIKPENIMVDGNNRGYI  167 (294)
T ss_pred             eeeEecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCcEEE
Confidence                                                  348889999999999998   999999999999999999999


Q ss_pred             cccccccccccCCCC---CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHH
Q 039228          177 GDFELARFRQEVSNP---TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       177 ~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~  253 (356)
                      +|||+++........   .........||+.|+|||+..+..++.++|||||||++|||++|..||....... ......
T Consensus       168 ~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~-~~~~~~  246 (294)
T PHA02882        168 IDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG-NLIHAA  246 (294)
T ss_pred             EEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch-HHHHHh
Confidence            999999866432211   1112233568999999999999999999999999999999999999997543222 111111


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      ..       +++.....+...                 ...++..+.+++..|++.+|++||++.+|++.|
T Consensus       247 ~~-------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        247 KC-------DFIKRLHEGKIK-----------------IKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             HH-------HHHHHhhhhhhc-----------------cCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            10       111111111000                 013345688999999999999999999999876

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=4.3e-36  Score=273.81  Aligned_cols=217  Identities=22%  Similarity=0.268  Sum_probs=169.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+.... ....+.+.+|+.++++++||||+++                
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            36888999999999999999999999999999987542 2334678899999999999999986                


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||++......      ...
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~------~~~  151 (279)
T cd06619          81 MDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSLK---ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS------IAK  151 (279)
T ss_pred             CCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCCHHHEEECCCCCEEEeeCCcceecccc------ccc
Confidence                             347889999999999999   999999999999999999999999999754321      223


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccH--HHHHHHhCCCchHHHhhhhhcccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNL--HNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      ...++..|+|||++.+..++.++|+||||+++|+|++|+.||..........  ......        +.+... .... 
T Consensus       152 ~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~-  221 (279)
T cd06619         152 TYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQC--------IVDEDP-PVLP-  221 (279)
T ss_pred             CCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHH--------HhccCC-CCCC-
Confidence            3568899999999999899999999999999999999999997533221111  010000        000000 0000 


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                      .......+.+++.+||+.+|++||++.++++.
T Consensus       222 ----------------~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         222 ----------------VGQFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             ----------------CCcCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence                            00122357899999999999999999999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.6e-36  Score=281.24  Aligned_cols=205  Identities=20%  Similarity=0.228  Sum_probs=160.1

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      +.||+|+||.||++....++..||+|++....   ......+..|+.+++.++||||+++                    
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            36899999999999999999999999997532   2334567789999999999999987                    


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....    .....
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~----~~~~~  153 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISD----GATMK  153 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEEcCCCCEEecccHHhccccCC----CCccc
Confidence                             347889999999999999   999999999999999999999999998743211    11223


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||.....     .......            ......   
T Consensus       154 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~-----~~~~~~~------------~~~~~~---  213 (323)
T cd05595         154 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFELI------------LMEEIR---  213 (323)
T ss_pred             cccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHH------------hcCCCC---
Confidence            45689999999999999999999999999999999999999964211     1111100            000000   


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                                   .+......+.+++.+||+.||.+||     ++.++++
T Consensus       214 -------------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         214 -------------FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             -------------CCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence                         0002233567999999999999998     7888765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.3e-36  Score=275.01  Aligned_cols=235  Identities=20%  Similarity=0.292  Sum_probs=171.3

Q ss_pred             cCCCCccccceecCceEEEEEEE----CCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..+|++.+.||+|+||.||+|..    ..++..||+|.+........+.+.+|+.+++.++||||+++            
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            35789999999999999999984    34678999999876655556788999999999999999875            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.+++.||.|||+.+   |+||||||+||+++.++.++|+|||++....
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~~~  159 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKR---YVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHhhEEECCCCeEEECCCccccccc
Confidence                                        347789999999999999   9999999999999999999999999998654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC--CchHHH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP--NRVMDI  264 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~~  264 (356)
                      ...... .......++..|+|||++.+..++.++||||||+++|||++|..|+.....   .+.........  .....+
T Consensus       160 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  235 (284)
T cd05081         160 QDKEYY-KVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPA---EFMRMMGNDKQGQMIVYHL  235 (284)
T ss_pred             CCCcce-eecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch---hhhhhcccccccccchHHH
Confidence            322111 111112234569999999988899999999999999999998877542211   11110000000  001111


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .+. +.....              ......++..+.+++.+||+.+|++|||+.+|++.|+.+
T Consensus       236 ~~~-~~~~~~--------------~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         236 IEL-LKNNGR--------------LPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHH-HhcCCc--------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            110 000000              000113445688999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-36  Score=307.33  Aligned_cols=223  Identities=22%  Similarity=0.345  Sum_probs=176.8

Q ss_pred             CCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .+.+....||+|.||.||.|....-     ...||||.++... ......|++|..+|+.++|||||++           
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL  771 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE
Confidence            4466778999999999999998643     2359999987653 4456789999999999999999987           


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                                       +.++.|||+|+.||++++   +|||||..+|+||+....+||+|||+
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~---fvHRDLAaRNCLL~~~r~VKIaDFGl  848 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKH---FVHRDLAARNCLLDERRVVKIADFGL  848 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCC---CcCcchhhhheeecccCcEEEcccch
Confidence                                             668999999999999998   99999999999999999999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCc
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      |+.+....-  ........-...|||||.+..+.++.++|||||||++||++| |..||......               
T Consensus       849 ArDiy~~~y--yr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~---------------  911 (1025)
T KOG1095|consen  849 ARDIYDKDY--YRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNF---------------  911 (1025)
T ss_pred             hHhhhhchh--eeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchH---------------
Confidence            994322111  111111233567999999999999999999999999999999 99998743211               


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                        +++...+.+.               ++..+..|+..+.+||..||+.+|++||++..|++.+..|....
T Consensus       912 --~v~~~~~~gg---------------RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~  965 (1025)
T KOG1095|consen  912 --EVLLDVLEGG---------------RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAA  965 (1025)
T ss_pred             --HHHHHHHhCC---------------ccCCCCCCChHHHHHHHHHccCChhhCccHHHHHhhhhhhhhhh
Confidence              1111111000               12223478999999999999999999999999999999998654

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=295.34  Aligned_cols=224  Identities=19%  Similarity=0.197  Sum_probs=179.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l---------------  134 (356)
                      .-++++.+.|.+|||+.||+|.+...+..||+|++-..+....+.+.+|+.+|+.|+ |+|||.+               
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            446788999999999999999999888999999987777777889999999999998 9999987               


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     +.|+.|+++|+++||.. ++||||||||-+||||+.+|..||||||.|.
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSat  194 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSAT  194 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccccc
Confidence                                           67999999999999998 4889999999999999999999999999986


Q ss_pred             ccccCC-CC-C---ccCCCCccccccccchhhh---cCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH
Q 039228          184 FRQEVS-NP-T---QSSSNGVRRTIGYTALDYD---LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       184 ~~~~~~-~~-~---~~~~~~~~gt~~y~aPE~~---~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      ...... .. .   ....-...-|+.|+|||++   .+..++.|+|||+|||+||-|+....||+....-          
T Consensus       195 t~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~l----------  264 (738)
T KOG1989|consen  195 TKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKL----------  264 (738)
T ss_pred             cccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcce----------
Confidence            422111 00 0   0000112248899999986   4678999999999999999999999999742111          


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                             .|++-    .+.              ....+.....|.+||..||+.||++||++-+|+..+.++...
T Consensus       265 -------aIlng----~Y~--------------~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~  314 (738)
T KOG1989|consen  265 -------AILNG----NYS--------------FPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANK  314 (738)
T ss_pred             -------eEEec----ccc--------------CCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcC
Confidence                   11111    110              000125566789999999999999999999999999999864

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=8.3e-36  Score=269.74  Aligned_cols=220  Identities=20%  Similarity=0.357  Sum_probs=170.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+   ...||+|.+..... .....+..|+.++++++||||+++            
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            35799999999999999999998643   46899999875433 334578899999999999999986            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.+++.||.|||+.+   |+|+||||+||++++++.++|+|||++......
T Consensus        83 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~  159 (266)
T cd05033          83 ITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRLEDS  159 (266)
T ss_pred             EEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCCEEECccchhhccccc
Confidence                                      457889999999999998   999999999999999999999999999876421


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ...  .......++..|+|||.+.+..++.++||||||+++|+|++ |..||......  ..........          
T Consensus       160 ~~~--~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~--~~~~~~~~~~----------  225 (266)
T cd05033         160 EAT--YTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQ--DVIKAVEDGY----------  225 (266)
T ss_pred             ccc--eeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHH--HHHHHHHcCC----------
Confidence            111  11112334678999999998899999999999999999998 99998643211  1111111000          


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                        ....                  ...++..+.+++.+||+.+|++||++.+|++.|+++
T Consensus       226 --~~~~------------------~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         226 --RLPP------------------PMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             --CCCC------------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence              0000                  012344678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=5.5e-36  Score=277.16  Aligned_cols=238  Identities=23%  Similarity=0.306  Sum_probs=168.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|.+.+.||+|+||.||+|++..++..||+|.++.... .....+.+|+.++++++||||+++                
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            579999999999999999999998999999999875432 233467789999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......    
T Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~----  158 (309)
T cd07872          86 LDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAKSVPT----  158 (309)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECccccceecCCCc----
Confidence                                 336789999999999999   9999999999999999999999999997543221    


Q ss_pred             cCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-C-CchH-HHhhhhh
Q 039228          194 SSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-P-NRVM-DIVNLVL  269 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~l  269 (356)
                      .......++..|+|||++.+ ..++.++|||||||++|+|+||+.||......+ .+........ + .... .+....-
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  237 (309)
T cd07872         159 KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVED-ELHLIFRLLGTPTEETWPGISSNDE  237 (309)
T ss_pred             cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCHHHHhhhcchhh
Confidence            11223456889999998865 458899999999999999999999997533211 1111111110 0 0000 0000000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..............     ..........+.+++.+||+.||.+|||+.++++
T Consensus       238 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         238 FKNYNFPKYKPQPL-----INHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             hhhhhcCccCCCch-----hhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            00000000000000     0011123445689999999999999999999987

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=8.9e-36  Score=274.21  Aligned_cols=224  Identities=21%  Similarity=0.287  Sum_probs=169.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCe--EEEEEEeecc-CccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRA--VVAIKVLSIQ-CQGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      ++|++.+.||.|+||.||+|....++.  .+++|.++.. .....+.+.+|+.++.++ +||||+++             
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            578999999999999999999876654  4788887643 233446788999999999 79999976             


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          135 ----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       135 ----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                                                              +.++.|++.||+|||+.+   |+||||||+||+++.++.+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~  158 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQ---FIHRDLAARNVLVGENLAS  158 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCcCCcceEEECCCCeE
Confidence                                                    236678999999999999   9999999999999999999


Q ss_pred             EEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHH
Q 039228          175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~  253 (356)
                      ||+|||++.......     .......+..|+|||++.+..++.++|||||||++|||++ |..||.....     ....
T Consensus       159 kl~dfg~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~-----~~~~  228 (297)
T cd05089         159 KIADFGLSRGEEVYV-----KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTC-----AELY  228 (297)
T ss_pred             EECCcCCCcccccee-----ccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH-----HHHH
Confidence            999999986322110     1111222457999999988889999999999999999997 9999864321     1111


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      ..         +........                  ...+...+.+++.+||+.+|.+||++.++++.|+.+.+....
T Consensus       229 ~~---------~~~~~~~~~------------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~~  281 (297)
T cd05089         229 EK---------LPQGYRMEK------------------PRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKA  281 (297)
T ss_pred             HH---------HhcCCCCCC------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence            10         111000000                  012334678999999999999999999999999999887654


Q ss_pred             cc
Q 039228          334 ET  335 (356)
Q Consensus       334 ~~  335 (356)
                      ..
T Consensus       282 ~~  283 (297)
T cd05089         282 YV  283 (297)
T ss_pred             cc
Confidence            43

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=6.7e-36  Score=274.18  Aligned_cols=223  Identities=22%  Similarity=0.347  Sum_probs=172.8

Q ss_pred             CCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+|.+.+.||+|+||.||+|...     .++..+++|.+........+.+.+|+.++++++||||+++            
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            45888899999999999999864     2456799999876555555778999999999999999875            


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc
Q 039228          135 -----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF  173 (356)
Q Consensus       135 -----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~  173 (356)
                                                               +.++.+|+.||+|||+++   |+||||||+||+++.++.
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nil~~~~~~  161 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQH---FVHRDLATRNCLVGANLL  161 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccCcceEEEccCCc
Confidence                                                     236788999999999999   999999999999999999


Q ss_pred             eEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHH
Q 039228          174 AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNF  252 (356)
Q Consensus       174 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~  252 (356)
                      ++|+|||++........  ........++..|+|||++.+..++.++||||||+++|||+| |..||......  .....
T Consensus       162 ~~l~dfg~a~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~--~~~~~  237 (291)
T cd05094         162 VKIGDFGMSRDVYSTDY--YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNT--EVIEC  237 (291)
T ss_pred             EEECCCCcccccCCCce--eecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH
Confidence            99999999975433211  112233456788999999999999999999999999999999 99998643211  11110


Q ss_pred             HHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          253 ARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ..   .+        ... ..                  ...++..+.+++.+||+.+|++||++.+|+++|+++....
T Consensus       238 ~~---~~--------~~~-~~------------------~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~~  286 (291)
T cd05094         238 IT---QG--------RVL-ER------------------PRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKAT  286 (291)
T ss_pred             Hh---CC--------CCC-CC------------------CccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhhc
Confidence            00   00        000 00                  0123446789999999999999999999999999997753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.9e-35  Score=274.31  Aligned_cols=160  Identities=24%  Similarity=0.318  Sum_probs=131.6

Q ss_pred             cccceecCceEEEEEEECC--CCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           77 INLIGVGSFDAVYQGVFDL--NRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      ...||+|+||.||+|+...  +++.||+|.+....  ....+.+|+.++++++||||+++                    
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE   83 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC
Confidence            4589999999999999753  56899999986432  23457789999999999999976                    


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe----CCCCceEEccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL----DNDLFAHIGDFELAR  183 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll----~~~~~~kl~Dfg~a~  183 (356)
                                                 ..++.|++.||.|||+.+   |+||||||+|||+    +.++.+||+|||+++
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07868          84 HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEecCCCCcCcEEEeecCcee
Confidence                                       236789999999999999   9999999999999    466889999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ........ ........+|+.|+|||++.+ ..++.++||||+||++|+|++|++||...
T Consensus       161 ~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         161 LFNSPLKP-LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             ccCCCCcc-ccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence            65432211 122334678999999999876 45889999999999999999999999643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1e-35  Score=268.47  Aligned_cols=216  Identities=27%  Similarity=0.407  Sum_probs=168.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|++|.||+|.+..+ +.||+|.++... ...+.+.+|+.++++++||||+++                
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~-~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNT-TPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTEL   82 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCC-eEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeec
Confidence            46799999999999999999997654 789999987543 335678899999999999999987                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||+++......  
T Consensus        83 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~--  157 (261)
T cd05068          83 MKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN---YIHRDLAARNVLVGENNICKVADFGLARVIKEDI--  157 (261)
T ss_pred             ccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCcceEEEcCCCCEEECCcceEEEccCCc--
Confidence                                   457789999999999999   9999999999999999999999999998664221  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                       .........+..|+|||++.+..++.++|+||||+++|+|++ |+.||......  .....            ++....
T Consensus       158 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~------------~~~~~~  222 (261)
T cd05068         158 -YEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNA--EVLQQ------------VDQGYR  222 (261)
T ss_pred             -ccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHH------------HHcCCC
Confidence             111122233467999999998899999999999999999999 99998643211  11110            110000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      ...                  ...++..+.+++.+||+.+|++||++.+|++.|+.
T Consensus       223 ~~~------------------~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         223 MPC------------------PPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             CCC------------------CCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence            000                  01234467899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=6e-36  Score=278.87  Aligned_cols=209  Identities=21%  Similarity=0.248  Sum_probs=160.1

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHH---hhcCCCChHHH-------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKAL---KNICHRNLVRF-------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l---~~l~h~niv~l-------------  134 (356)
                      |++.+.||+|+||.||+|.+..+++.||||+++...   ....+.+..|+.++   +.++||||+++             
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            678899999999999999999999999999997432   22345566676654   56789999987             


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++......  
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~--  155 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENK---IVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFG--  155 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCcEEeCcccCCccCCCCC--
Confidence                                   458889999999999999   9999999999999999999999999986432211  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                        .......|++.|+|||++.+..++.++|||||||++|+|++|+.||.....     ....            +.....
T Consensus       156 --~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~-----~~~~------------~~i~~~  216 (324)
T cd05589         156 --DRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE-----EEVF------------DSIVND  216 (324)
T ss_pred             --CcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH-----HHHH------------HHHHhC
Confidence              122346789999999999999999999999999999999999999964221     1111            111000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                      ...                .+......+.+++.+||+.||.+||     ++.++++
T Consensus       217 ~~~----------------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         217 EVR----------------YPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             CCC----------------CCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            000                0002234567899999999999999     4566554

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=2.4e-35  Score=266.34  Aligned_cols=221  Identities=22%  Similarity=0.320  Sum_probs=173.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|....+++.||+|.++..   .....+.+.+|+.++++++|+|++++              
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            5799999999999999999999988999999988642   22335678899999999999999876              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++.....
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKR---IMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCC---EecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence                                       346788999999999999   99999999999999999999999999876533


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..    .......++..|+|||.+.+..++.++|+||||+++|+|++|+.||....   .........            
T Consensus       159 ~~----~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~~~------------  219 (267)
T cd08224         159 KT----TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK---MNLYSLCKK------------  219 (267)
T ss_pred             CC----cccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC---ccHHHHHhh------------
Confidence            21    11223457888999999998889999999999999999999999985322   111111111            


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      ........              .........+.+++.+||..+|++|||+.+|+++|+.+.
T Consensus       220 ~~~~~~~~--------------~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         220 IEKCDYPP--------------LPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             hhcCCCCC--------------CChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            00000000              000133446789999999999999999999999998874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=6.1e-36  Score=292.74  Aligned_cols=213  Identities=18%  Similarity=0.193  Sum_probs=168.0

Q ss_pred             CCCccccceecCceEEEEEEECCC-CeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLN-RAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .|.+.+.||+|+||.||+|....+ +..||+|.+..........+..|+.+|+.++||||+++                 
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            489999999999999999998877 78899998765555555667889999999999999986                 


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.......
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~  224 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK---MMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVS  224 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCcCHHhEEECCCCcEEEEeCcCceecCCccc
Confidence                                    236789999999999999   99999999999999999999999999986543221


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        ........||+.|+|||++.+..++.++|||||||++|+|++|+.||.....     ..            ++...+.
T Consensus       225 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~-----~~------------~~~~~~~  285 (478)
T PTZ00267        225 --LDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQ-----RE------------IMQQVLY  285 (478)
T ss_pred             --cccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH-----HH------------HHHHHHh
Confidence              1223346789999999999999999999999999999999999999963211     11            1111111


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +....               .+..+...+.+++..||..||++||++.+++.
T Consensus       286 ~~~~~---------------~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        286 GKYDP---------------FPCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CCCCC---------------CCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence            11100               00123345789999999999999999999875

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-37  Score=288.70  Aligned_cols=233  Identities=21%  Similarity=0.280  Sum_probs=182.7

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEEECCCC----eEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH-
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNR----AVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF-  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l-  134 (356)
                      ..+.|+...++-.+.+.||+|+||.||+|.....+    ..||+|..+..   .....+++.+|+++|++++|||||++ 
T Consensus       148 ~r~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~y  227 (474)
T KOG0194|consen  148 PRQKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFY  227 (474)
T ss_pred             cccccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            33456667788888899999999999999987542    23899998752   35567889999999999999999997 


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEc
Q 039228          135 -------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIG  177 (356)
Q Consensus       135 -------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~  177 (356)
                                                           +.++.+.+.||+|||+++   +|||||-.+|+|++.++.+||+
T Consensus       228 GVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~---~IHRDIAARNcL~~~~~~vKIS  304 (474)
T KOG0194|consen  228 GVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKN---CIHRDIAARNCLYSKKGVVKIS  304 (474)
T ss_pred             EEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCC---CcchhHhHHHheecCCCeEEeC
Confidence                                                 458889999999999999   9999999999999999999999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHH-HH
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFA-RM  255 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~-~~  255 (356)
                      |||+++.....    ........-...|+|||.+....++.++|||||||++||+++ |..||.+....  .....+ ..
T Consensus       305 DFGLs~~~~~~----~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~--~v~~kI~~~  378 (474)
T KOG0194|consen  305 DFGLSRAGSQY----VMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY--EVKAKIVKN  378 (474)
T ss_pred             ccccccCCcce----eeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH--HHHHHHHhc
Confidence            99998754311    111111234678999999999999999999999999999999 88898754322  111111 11


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                      .++.                              ..+...+..+..++.+||..+|++||+|.++.+.|+.+.....+.
T Consensus       379 ~~r~------------------------------~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~~~  427 (474)
T KOG0194|consen  379 GYRM------------------------------PIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKEAF  427 (474)
T ss_pred             CccC------------------------------CCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccccc
Confidence            1110                              011134456778899999999999999999999999999887654

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=4.3e-36  Score=273.31  Aligned_cols=220  Identities=21%  Similarity=0.341  Sum_probs=166.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..     ++..||+|.+.... ......+.+|+.+++.++||||+++         
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            45679999999999999999998642     35789999986432 2334568899999999999999976         


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEE
Q 039228          135 --------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHI  176 (356)
Q Consensus       135 --------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl  176 (356)
                                                            +.++.+++.||.|||+.+   ++|+||||+||++++++.++|
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCcchheEEEcCCCCEEE
Confidence                                                  225678999999999998   999999999999999999999


Q ss_pred             cccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHH
Q 039228          177 GDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       177 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      +|||+++........  .......++..|+|||++.+..++.++|||||||++|||++ |..||.....     ......
T Consensus       161 ~dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~-----~~~~~~  233 (277)
T cd05062         161 GDFGMTRDIYETDYY--RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN-----EQVLRF  233 (277)
T ss_pred             CCCCCccccCCccee--ecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH-----HHHHHH
Confidence            999998754322211  11122345678999999998889999999999999999999 7889864321     111110


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                              +...... ..                  ...++..+.+++.+||+.||++|||+.++++.|++
T Consensus       234 --------~~~~~~~-~~------------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         234 --------VMEGGLL-DK------------------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             --------HHcCCcC-CC------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence                    0000000 00                  01234467899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1e-35  Score=290.76  Aligned_cols=163  Identities=21%  Similarity=0.317  Sum_probs=133.2

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCC------hHHH-------
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN------LVRF-------  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l-------  134 (356)
                      ....++|++.+.||+|+||.||+|.+..+++.||||+++... .....+..|+.++..++|.+      ++++       
T Consensus       125 ~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~  203 (467)
T PTZ00284        125 DVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNE  203 (467)
T ss_pred             ccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcC
Confidence            345678999999999999999999999899999999986432 22344566777777776543      3332       


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCC-----------
Q 039228          135 ------------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDL-----------  172 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~-----------  172 (356)
                                                    ..++.||+.||.|||+ .+   ||||||||+|||++.++           
T Consensus       204 ~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~g---IiHrDlKP~NILl~~~~~~~~~~~~~~~  280 (467)
T PTZ00284        204 TGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELH---LMHTDLKPENILMETSDTVVDPVTNRAL  280 (467)
T ss_pred             CceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEEEecCCccccccccccc
Confidence                                          3578899999999997 48   99999999999998665           


Q ss_pred             -----ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          173 -----FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       173 -----~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                           .+||+|||.+....       .......||+.|+|||++.+..++.++|||||||++|||++|+.||+.
T Consensus       281 ~~~~~~vkl~DfG~~~~~~-------~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~  347 (467)
T PTZ00284        281 PPDPCRVRICDLGGCCDER-------HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDT  347 (467)
T ss_pred             CCCCceEEECCCCccccCc-------cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                 49999999875321       122346789999999999999999999999999999999999999974

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=1.7e-35  Score=276.85  Aligned_cols=162  Identities=25%  Similarity=0.366  Sum_probs=140.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||.|+||.||+|.+..++..+|+|++..... .....+.+|+++++.++||||+++               
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            4689999999999999999999999999999999875432 334678899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                            ..++.+++.||.|||+. +   |+|+||||+|||++.++.+||+|||++......   
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~---  157 (333)
T cd06650          84 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---  157 (333)
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChhhEEEcCCCCEEEeeCCcchhhhhh---
Confidence                                  34778999999999974 6   999999999999999999999999998754321   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         ......|+..|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       158 ---~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         158 ---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             ---ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence               12235678999999999988899999999999999999999999964

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-36  Score=283.79  Aligned_cols=167  Identities=23%  Similarity=0.257  Sum_probs=141.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|++..+++.||||++....   ......+.+|+.++..++||||+++              
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            47999999999999999999999999999999997532   2334567889999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||+|||+.+   |+||||||+|||++.++.++|+|||+++.+......
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  157 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLG---YIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRT  157 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEeecccceeccccccc
Confidence                                   347889999999999999   999999999999999999999999998754321110


Q ss_pred             C----------------------------------ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCC
Q 039228          192 T----------------------------------QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRK  237 (356)
Q Consensus       192 ~----------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~  237 (356)
                      .                                  ........||+.|+|||++.+..++.++|||||||++|||++|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~  237 (364)
T cd05599         158 EFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYP  237 (364)
T ss_pred             cccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCC
Confidence            0                                  001113468999999999999999999999999999999999999


Q ss_pred             CCCc
Q 039228          238 PIDF  241 (356)
Q Consensus       238 Pf~~  241 (356)
                      ||..
T Consensus       238 Pf~~  241 (364)
T cd05599         238 PFCS  241 (364)
T ss_pred             CCCC
Confidence            9964

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.3e-35  Score=267.30  Aligned_cols=212  Identities=19%  Similarity=0.296  Sum_probs=162.9

Q ss_pred             cceecCceEEEEEEE--CCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           79 LIGVGSFDAVYQGVF--DLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~--~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      .||+|+||.||+|.+  ..++..+|+|++.....  ...+.+..|+.+++.++||||+++                    
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~   81 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGP   81 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCc
Confidence            589999999999975  45678999999864432  234678899999999999999976                    


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCC
Q 039228          135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG  198 (356)
Q Consensus       135 ----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  198 (356)
                                      ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++.......... .....
T Consensus        82 L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~  157 (257)
T cd05116          82 LNKFLQKNKHVTEKNITELVHQVSMGMKYLEETN---FVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYY-KAKTH  157 (257)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchhhEEEcCCCeEEECCCccccccCCCCCee-eecCC
Confidence                            457889999999999999   9999999999999999999999999997654332211 11122


Q ss_pred             ccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       199 ~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ..++..|+|||.+....++.++|+||||+++|||++ |..||......  .....            +........    
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~------------i~~~~~~~~----  219 (257)
T cd05116         158 GKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN--EVTQM------------IESGERMEC----  219 (257)
T ss_pred             CCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH------------HHCCCCCCC----
Confidence            334578999999988889999999999999999998 99999743211  11111            111100000    


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                                    +..++..+.+++.+||+.||++||++.+|.+.|+.
T Consensus       220 --------------~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         220 --------------PQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             --------------CCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence                          01234467899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.2e-35  Score=268.35  Aligned_cols=217  Identities=24%  Similarity=0.391  Sum_probs=169.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+ ..||+|.+..... ..+.+.+|+.+++.++||||+++                
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~-~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~   82 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYM   82 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCC-ceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcC
Confidence            45699999999999999999998766 5699999875332 34678899999999999999875                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+++.||.|||+.+   ++|+||||+||+++.++.++|+|||.+........  
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~--  157 (262)
T cd05071          83 SKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNEY--  157 (262)
T ss_pred             CCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcccEEEcCCCcEEeccCCceeecccccc--
Confidence                                  347789999999999999   99999999999999999999999999976543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......++..|+|||+..+..++.++||||||+++|+|++ |..||......     .....         +......
T Consensus       158 -~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~-----~~~~~---------~~~~~~~  222 (262)
T cd05071         158 -TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-----EVLDQ---------VERGYRM  222 (262)
T ss_pred             -ccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChH-----HHHHH---------HhcCCCC
Confidence             11223445678999999988889999999999999999999 88898643211     00000         0000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .                  ....++..+.+++.+||+.+|++||++.++++.|+..
T Consensus       223 ~------------------~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         223 P------------------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             C------------------CccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence            0                  0113455678999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1e-35  Score=301.69  Aligned_cols=226  Identities=23%  Similarity=0.301  Sum_probs=173.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....   ....+++.+|+.++++++||||+++              
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            57999999999999999999999999999999987432   2234578999999999999999976              


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                        +.++.||+.||+|||+.+   |+||||||+||+++.++.++|+|||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~G---IIHRDLKPeNILLd~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKG---VLHRDLKPDNILLGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchheEEEcCCCCEEEEecC
Confidence                                              235679999999999999   9999999999999999999999999


Q ss_pred             cccccccCCC--------------CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC
Q 039228          181 LARFRQEVSN--------------PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD  246 (356)
Q Consensus       181 ~a~~~~~~~~--------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~  246 (356)
                      +++.......              ..........||+.|+|||++.+..++.++|||||||++|||+||..||.......
T Consensus       159 LAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k  238 (932)
T PRK13184        159 AAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK  238 (932)
T ss_pred             cceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh
Confidence            9986521110              01112234579999999999999999999999999999999999999996421111


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-ChHHHHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-NVPNAVHDLQ  325 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-s~~~vl~~L~  325 (356)
                      ...    ....       .++.-...                   ....+..+.+++.+||+.||++|| +++++++.|+
T Consensus       239 i~~----~~~i-------~~P~~~~p-------------------~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le  288 (932)
T PRK13184        239 ISY----RDVI-------LSPIEVAP-------------------YREIPPFLSQIAMKALAVDPAERYSSVQELKQDLE  288 (932)
T ss_pred             hhh----hhhc-------cChhhccc-------------------cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence            000    0000       00000000                   013344678999999999999996 6888888888


Q ss_pred             Hhhhh
Q 039228          326 SVNNI  330 (356)
Q Consensus       326 ~i~~~  330 (356)
                      .....
T Consensus       289 ~~lq~  293 (932)
T PRK13184        289 PHLQG  293 (932)
T ss_pred             HHHhc
Confidence            87654

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.5e-35  Score=266.68  Aligned_cols=215  Identities=24%  Similarity=0.303  Sum_probs=166.3

Q ss_pred             ccceecCceEEEEEEECCCC---eEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNR---AVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~---~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..++   ..||+|.+..... ...+.+..|+.+++.++||||+++                   
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~   80 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLG   80 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCC
Confidence            46999999999999876554   7899999875433 345678899999999999999986                   


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.|++.||.|||..+   ++|+||||+||+++.++.++|+|||+++......... ....
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~-~~~~  156 (257)
T cd05060          81 PLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKH---FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYY-RATT  156 (257)
T ss_pred             cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcC---eeccCcccceEEEcCCCcEEeccccccceeecCCccc-cccc
Confidence                             458889999999999999   9999999999999999999999999998664433211 1112


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ...++..|+|||.+.+..++.++||||||+++|+|++ |..||.....  ..+........+            ..    
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~--~~~~~~~~~~~~------------~~----  218 (257)
T cd05060         157 AGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG--AEVIAMLESGER------------LP----  218 (257)
T ss_pred             CccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHHcCCc------------CC----
Confidence            2234567999999998899999999999999999998 9999964321  111111111100            00    


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                                    .+..++..+.+++.+||+.+|++||++.+|++.|+.+.
T Consensus       219 --------------~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         219 --------------RPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             --------------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence                          00123446789999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=4.6e-36  Score=281.39  Aligned_cols=210  Identities=22%  Similarity=0.234  Sum_probs=164.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC-eEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR-AVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~-~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++ ..||+|.+...   .....+.+.+|+.+++.++||||+++            
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            457999999999999999999876554 78999998643   22334578899999999999999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++..... 
T Consensus       109 v~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~-  184 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLN---IVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR-  184 (340)
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEecCCCCeecCCC-
Confidence                                     347889999999999999   999999999999999999999999999765321 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                            .....||+.|+|||++.+..++.++|||||||++|||++|..||.....    . .....        +.....
T Consensus       185 ------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~----~-~~~~~--------i~~~~~  245 (340)
T PTZ00426        185 ------TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEP----L-LIYQK--------ILEGII  245 (340)
T ss_pred             ------cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCH----H-HHHHH--------HhcCCC
Confidence                  2235689999999999988899999999999999999999999964211    0 00000        000000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~~  323 (356)
                      .  .+                  ......+.+++.+|++.||.+|+     +++++++.
T Consensus       246 ~--~p------------------~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        246 Y--FP------------------KFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             C--CC------------------CCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            0  00                  01122457899999999999995     78877654

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=9.9e-36  Score=271.25  Aligned_cols=223  Identities=20%  Similarity=0.352  Sum_probs=172.8

Q ss_pred             cCCCCccccceecCceEEEEEEECC----CCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .++|++.+.||+|+||.||+|.+..    ++..|++|.+.... ....+.+.+|+.+++.++||||+++           
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            4679999999999999999999876    35889999986432 3345678899999999999999986           


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                         +.++.+++.||.|||+.+   ++|+||||+||+++.++.+||+||
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kl~d~  161 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRG---VIHKDIAARNCVIDEELQVKITDN  161 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCHhhEEEcCCCcEEECCC
Confidence                                               236779999999999998   999999999999999999999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCC
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      |+++.+.....  ........++..|+|||++.+..++.++||||||+++||+++ |+.||.....  ..+..+..... 
T Consensus       162 g~~~~~~~~~~--~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~-  236 (280)
T cd05043         162 ALSRDLFPMDY--HCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP--FEMAAYLKDGY-  236 (280)
T ss_pred             CCcccccCCce--EEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH--HHHHHHHHcCC-
Confidence            99975532211  111122345678999999998889999999999999999999 9999864211  11111111100 


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                                 ...                  ....++..+.+++.+||..||++|||+.+|++.|+.+.+.
T Consensus       237 -----------~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~~  279 (280)
T cd05043         237 -----------RLA------------------QPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFHAQ  279 (280)
T ss_pred             -----------CCC------------------CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence                       000                  0012344678999999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=1e-35  Score=266.90  Aligned_cols=211  Identities=22%  Similarity=0.309  Sum_probs=162.1

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|.+.... ......+.+|+.+++.++||||+++                      
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            36899999999999999889999999876432 2334678999999999999999986                      


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCC
Q 039228          135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG  198 (356)
Q Consensus       135 ----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  198 (356)
                                      +.++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++........  ......
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~  155 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVY--ASTGGM  155 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEEcCCCcEEECccccCcccccccc--cccCCC
Confidence                            447889999999999999   99999999999999999999999999875432111  111111


Q ss_pred             ccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       199 ~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...+..|+|||.+.+..++.++||||||+++|+|++ |..||......  ..            ...+........    
T Consensus       156 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~--~~------------~~~~~~~~~~~~----  217 (252)
T cd05084         156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQ--QT------------REAIEQGVRLPC----  217 (252)
T ss_pred             CCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHH--HH------------HHHHHcCCCCCC----
Confidence            223457999999998889999999999999999998 88998642211  01            111111100000    


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                                    ...++..+.+++.+||+.+|++|||+.+|+++|+
T Consensus       218 --------------~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  251 (252)
T cd05084         218 --------------PELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ  251 (252)
T ss_pred             --------------cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence                          0123446789999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-35  Score=276.98  Aligned_cols=248  Identities=22%  Similarity=0.202  Sum_probs=173.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+... .......+..|+.++++++||||+++               
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            57899999999999999999999999999999998643 22344668889999999999999987               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++.......
T Consensus        84 ~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~  160 (336)
T cd07849          84 YIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTNCDLKICDFGLARIADPEH  160 (336)
T ss_pred             EEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEECcccceeeccccc
Confidence                                     236778999999999999   9999999999999999999999999997654322


Q ss_pred             CCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC----CchHHH
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP----NRVMDI  264 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~----~~~~~~  264 (356)
                      .. ........++..|+|||.+.+ ..++.++|||||||++|+|++|+.||.....  ..........+.    +....+
T Consensus       161 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~  237 (336)
T cd07849         161 DH-TGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDY--LHQLNLILGVLGTPSQEDLNCI  237 (336)
T ss_pred             cc-cCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHcCCCCHHHHHHh
Confidence            21 112234567899999998754 5688999999999999999999999964211  011111111111    111111


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH--HHHhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD--LQSVN  328 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~--L~~i~  328 (356)
                      .+..............    ........+.....+.+++.+||+.+|++|||+.++++.  +....
T Consensus       238 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~  299 (336)
T cd07849         238 ISLRARNYIKSLPFKP----KVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYH  299 (336)
T ss_pred             hchhhhhHHhhcCcCC----cccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccC
Confidence            1111000000000000    000000011234567899999999999999999999987  55443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=1.8e-35  Score=265.95  Aligned_cols=216  Identities=24%  Similarity=0.317  Sum_probs=166.3

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchH--HHHHHHHHHhhcCCCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~--~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      |++.+.||+|+||+||++....+++.||+|++.........  ....|+.++++++||||+++                 
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            67789999999999999999999999999999866443322  34569999999999999987                 


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.|++.||.+||+.+   |+|+||||+||+++.++.++|+|||.+.....    ...
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~---i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~----~~~  153 (260)
T PF00069_consen   81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKG---IVHRDIKPENILLDENGEVKLIDFGSSVKLSE----NNE  153 (260)
T ss_dssp             TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTT---EEESSBSGGGEEESTTSEEEESSGTTTEESTS----TTS
T ss_pred             cccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc----ccc
Confidence                                568899999999999999   99999999999999999999999999975411    122


Q ss_pred             CCCCccccccccchhhhc-CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          195 SSNGVRRTIGYTALDYDL-GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~-~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                      ......++..|+|||++. +..++.++|+||+|+++|+|++|..||.....  .+......        ......+....
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~--~~~~~~~~--------~~~~~~~~~~~  223 (260)
T PF00069_consen  154 NFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS--DDQLEIIE--------KILKRPLPSSS  223 (260)
T ss_dssp             EBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH--HHHHHHHH--------HHHHTHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc--hhhhhhhh--------hcccccccccc
Confidence            333466788999999998 78899999999999999999999999975410  01111100        00100000000


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .                ........+.+++..||+.||++||++.++++
T Consensus       224 ~----------------~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  224 Q----------------QSREKSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             T----------------SHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             c----------------ccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0                00011257899999999999999999999975

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.5e-35  Score=266.57  Aligned_cols=213  Identities=19%  Similarity=0.344  Sum_probs=164.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ++|++.+.||+|+||.||+|.++.+ ..+|+|.+... ......+.+|+.++++++||||+++                 
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~-~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQ-IKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccC-ceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            4588899999999999999998754 68999987643 2334678899999999999999986                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||.++.......   
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~---  155 (256)
T cd05114          82 ENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNS---FIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEY---  155 (256)
T ss_pred             CCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccCcceEEEcCCCeEEECCCCCccccCCCce---
Confidence                                 457789999999999999   99999999999999999999999999875432211   


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      .......++..|+|||++.+..++.++|+||||+++|+|++ |+.||.....  .........   ..      ..... 
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~--~~~~~~i~~---~~------~~~~~-  223 (256)
T cd05114         156 TSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN--YEVVEMISR---GF------RLYRP-  223 (256)
T ss_pred             eccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHC---CC------CCCCC-
Confidence            11122334568999999988889999999999999999999 8999864211  111111100   00      00000 


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                                          ......+.+++.+||+.+|++||++.++++.|
T Consensus       224 --------------------~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         224 --------------------KLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             --------------------CCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence                                01223578999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2e-35  Score=266.42  Aligned_cols=217  Identities=22%  Similarity=0.336  Sum_probs=161.4

Q ss_pred             ccceecCceEEEEEEECC---CCeEEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..   .+..||+|.+... .....+.+.+|+.+++.++||||+++                   
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            368999999999998643   3468999998533 23345678899999999999999986                   


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          +.++.+++.||.|||+.+   ++||||||+||+++.++.+||+|||+++...........
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~  157 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKK---FVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVH  157 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCccccccccCCcceeec
Confidence                                346779999999999998   999999999999999999999999999754322111111


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcC-CCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                      ......++..|+|||++.+..++.++||||||+++|||++| .+||....     ........            .....
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~-----~~~~~~~~------------~~~~~  220 (262)
T cd05058         158 NHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVD-----SFDITVYL------------LQGRR  220 (262)
T ss_pred             ccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCC-----HHHHHHHH------------hcCCC
Confidence            12234456789999999888899999999999999999995 56664321     11111110            00000


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      .               ......+..+.+++..||+.+|++||++.+|++.|+++..
T Consensus       221 ~---------------~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~~  261 (262)
T cd05058         221 L---------------LQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIFS  261 (262)
T ss_pred             C---------------CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHhc
Confidence            0               0001223467899999999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.6e-35  Score=266.94  Aligned_cols=217  Identities=24%  Similarity=0.380  Sum_probs=168.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|.... ++.||+|.+.... .....+.+|+.++++++|+||+++               
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~-~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~   81 (260)
T cd05067           4 PRETLKLVKKLGAGQFGEVWMGYYNG-HTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEY   81 (260)
T ss_pred             chHHceeeeeeccCccceEEeeecCC-CceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEc
Confidence            34679999999999999999999764 5789999987443 334678899999999999999876               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.+++.||.|||+.+   ++|+||||+||+++.++.++|+|||++........ 
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~-  157 (260)
T cd05067          82 MENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKN---YIHRDLRAANILVSETLCCKIADFGLARLIEDNEY-  157 (260)
T ss_pred             CCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHHhEEEcCCCCEEEccCcceeecCCCCc-
Confidence                                   347889999999999998   99999999999999999999999999976542211 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        .......++..|+|||++.+..++.++||||||+++|||++ |+.||......  .....            +.....
T Consensus       158 --~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~------------~~~~~~  221 (260)
T cd05067         158 --TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP--EVIQN------------LERGYR  221 (260)
T ss_pred             --ccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChH--HHHHH------------HHcCCC
Confidence              11123345678999999998889999999999999999999 99999643211  11111            000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      ...                  ....+..+.+++.+||+.+|++||++++++..|+.
T Consensus       222 ~~~------------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         222 MPR------------------PDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             CCC------------------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            000                  01233468899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.3e-35  Score=267.50  Aligned_cols=216  Identities=25%  Similarity=0.419  Sum_probs=167.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.... +..||+|.+..... ..+.+.+|+.++++++|+|++++                
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~-~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~   82 (260)
T cd05070           5 RESLQLIKKLGNGQFGEVWMGTWNG-NTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYM   82 (260)
T ss_pred             hHHhhhhheeccccCceEEEEEecC-CceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEec
Confidence            4578999999999999999998764 46799999875433 34678999999999999998875                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+++.||.|||+.+   ++|+||||+||++++++.++|+|||++........  
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~--  157 (260)
T cd05070          83 SKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGDGLVCKIADFGLARLIEDNEY--  157 (260)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEEeCCceEEeCCceeeeeccCccc--
Confidence                                  457789999999999999   99999999999999999999999999976543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......++..|+|||+..+..++.++|+||||+++|+|++ |..||......  .....            +......
T Consensus       158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~--~~~~~------------~~~~~~~  222 (260)
T cd05070         158 -TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR--EVLEQ------------VERGYRM  222 (260)
T ss_pred             -ccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHH--HHHHH------------HHcCCCC
Confidence             11122334667999999988889999999999999999999 89998642211  11111            1100000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      ..                  ....+..+.+++.+||..+|++|||+.++.+.|+.
T Consensus       223 ~~------------------~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         223 PC------------------PQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             CC------------------CCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            00                  01233468899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=2e-35  Score=270.77  Aligned_cols=220  Identities=20%  Similarity=0.310  Sum_probs=168.4

Q ss_pred             CCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      +|++.+.||+|+||.||+|....     +...+++|.+..... .....+.+|+.+++.++||||+++            
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            47888999999999999998753     235789998864432 334678899999999999999975            


Q ss_pred             -------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCC
Q 039228          135 -------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSN  165 (356)
Q Consensus       135 -------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~N  165 (356)
                                                                       +.++.+++.||.|||+.+   |+||||||+|
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~---ivH~dikp~n  157 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMK---LVHRDLAARN  157 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCC---eehhhhhhhe
Confidence                                                             246779999999999999   9999999999


Q ss_pred             eEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCcccc
Q 039228          166 VLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFE  244 (356)
Q Consensus       166 Ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~  244 (356)
                      |++++++.++|+|||+++........  .......++..|+|||.+.+..++.++||||||+++|+|++ |..||.....
T Consensus       158 ill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~  235 (290)
T cd05045         158 VLVAEGRKMKISDFGLSRDVYEEDSY--VKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP  235 (290)
T ss_pred             EEEcCCCcEEeccccccccccCccch--hcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            99999999999999999754322211  11122345678999999988889999999999999999998 9999864211


Q ss_pred             CCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          245 GDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                           ..         +.+.+........                  +..+...+.+++..||+.+|++||++.++++.|
T Consensus       236 -----~~---------~~~~~~~~~~~~~------------------~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l  283 (290)
T cd05045         236 -----ER---------LFNLLKTGYRMER------------------PENCSEEMYNLMLTCWKQEPDKRPTFADISKEL  283 (290)
T ss_pred             -----HH---------HHHHHhCCCCCCC------------------CCCCCHHHHHHHHHHccCCcccCCCHHHHHHHH
Confidence                 11         1111111111000                  013344678999999999999999999999999


Q ss_pred             HHhhh
Q 039228          325 QSVNN  329 (356)
Q Consensus       325 ~~i~~  329 (356)
                      +++..
T Consensus       284 ~~~~~  288 (290)
T cd05045         284 EKMMV  288 (290)
T ss_pred             HHHHh
Confidence            98864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=1.2e-35  Score=282.99  Aligned_cols=166  Identities=23%  Similarity=0.277  Sum_probs=139.9

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .|++++.||+|+||.||+|++..+++.||+|++....   ......+..|+.+++.++||||+++               
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            5889999999999999999999999999999997532   2334568899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC-
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP-  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~-  191 (356)
                                            ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++..+...... 
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~  158 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMG---FIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSK  158 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCcHHHEEECCCCCEEEeeCcCCcccccccccc
Confidence                                  336789999999999999   999999999999999999999999997643110000 


Q ss_pred             ------------------------------------------CccCCCCccccccccchhhhcCCCCCCccchHhHHHHH
Q 039228          192 ------------------------------------------TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILL  229 (356)
Q Consensus       192 ------------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l  229 (356)
                                                                .........||+.|+|||++.+..++.++|||||||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il  238 (381)
T cd05626         159 YYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVIL  238 (381)
T ss_pred             cccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHH
Confidence                                                      00011235799999999999988999999999999999


Q ss_pred             HHHHcCCCCCCc
Q 039228          230 LEMVTRRKPIDF  241 (356)
Q Consensus       230 ~elltg~~Pf~~  241 (356)
                      |||++|..||..
T Consensus       239 ~elltG~~Pf~~  250 (381)
T cd05626         239 FEMLVGQPPFLA  250 (381)
T ss_pred             HHHHhCCCCCcC
Confidence            999999999964

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=3e-35  Score=268.56  Aligned_cols=240  Identities=21%  Similarity=0.243  Sum_probs=167.1

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|+||.||+|++..+|..||+|.++...  ......+.+|+.++++++||||+++                
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            4888899999999999999999999999999987532  2233567789999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.||+.||.|||+.+   |+||||||+||+++.++.++|+|||+++......    
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~----  153 (284)
T cd07839          81 CDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHN---VLHRDLKPQNLLINKNGELKLADFGLARAFGIPV----  153 (284)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEcCCCcEEECccchhhccCCCC----
Confidence                                 347889999999999999   9999999999999999999999999997553321    


Q ss_pred             cCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      .......++..|+|||++.+. .++.++|||||||++|+|+||..||.........+..............+.......+
T Consensus       154 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (284)
T cd07839         154 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPD  233 (284)
T ss_pred             CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhccc
Confidence            112234568899999998764 4789999999999999999999986433222111111111111111000000000000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ... .......  ..+..........+.+++.+||+.||.+|||+.+++.
T Consensus       234 ~~~-~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         234 YKP-YPMYPAT--TSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             ccc-cCCCCCc--chhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            000 0000000  0000111234456789999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=6.1e-36  Score=283.79  Aligned_cols=220  Identities=20%  Similarity=0.177  Sum_probs=167.5

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..+++.||+|++....   ......+..|+.+++.++||||+++           
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~  119 (370)
T cd05596          40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY  119 (370)
T ss_pred             CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            34568999999999999999999999999999999996432   2233457789999999999999987           


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++.......
T Consensus       120 lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~  196 (370)
T cd05596         120 MVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANG  196 (370)
T ss_pred             EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEcCCCCEEEEeccceeeccCCC
Confidence                                     346789999999999999   9999999999999999999999999997653221


Q ss_pred             CCCccCCCCccccccccchhhhcCC----CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS----EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                         ........||+.|+|||++.+.    .++.++|||||||++|||++|+.||.....     ....        ..+.
T Consensus       197 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~-----~~~~--------~~i~  260 (370)
T cd05596         197 ---MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTY--------SKIM  260 (370)
T ss_pred             ---cccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH-----HHHH--------HHHH
Confidence               1122346789999999998653    378899999999999999999999964211     1111        1111


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCC--CCChHHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQD--RMNVPNAVHD  323 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~~vl~~  323 (356)
                      +..-....+                ........+.+++.+||+.+|.+  ||++.+++..
T Consensus       261 ~~~~~~~~~----------------~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         261 DHKNSLTFP----------------DDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             cCCCcCCCC----------------CcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence            100000000                00022346688999999999988  9999999764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.5e-35  Score=269.80  Aligned_cols=218  Identities=25%  Similarity=0.350  Sum_probs=166.5

Q ss_pred             cCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..     ++..||+|.+..... .....+..|+.+++.++|+||+++          
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPR   84 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCc
Confidence            4679999999999999999999976     678999999864432 234568899999999999999986          


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC---ceEEc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL---FAHIG  177 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~---~~kl~  177 (356)
                                                        +.++.+|+.||.|||+.+   ++|+||||+||+++.++   .+||+
T Consensus        85 ~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~nil~~~~~~~~~~kl~  161 (277)
T cd05036          85 FILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH---FIHRDIAARNCLLTCKGPGRVAKIA  161 (277)
T ss_pred             EEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccchheEEEeccCCCcceEec
Confidence                                              247889999999999999   99999999999998654   58999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHh
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      |||+++.......  .........+..|+|||++.+..++.++|||||||++|||++ |..||......  ....     
T Consensus       162 dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~--~~~~-----  232 (277)
T cd05036         162 DFGMARDIYRASY--YRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQ--EVME-----  232 (277)
T ss_pred             cCccccccCCccc--eecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH--HHHH-----
Confidence            9999986532111  111112233567999999998899999999999999999997 99998743211  1111     


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                             .+........                  +..++..+.+++.+||+.+|++||++.+|++.|+
T Consensus       233 -------~~~~~~~~~~------------------~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         233 -------FVTGGGRLDP------------------PKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             -------HHHcCCcCCC------------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence                   1110000000                  0123446789999999999999999999999886

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.4e-35  Score=270.70  Aligned_cols=218  Identities=21%  Similarity=0.314  Sum_probs=166.3

Q ss_pred             CCCCccccceecCceEEEEEEEC----CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD----LNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|++.+.||+|+||.||+|.+.    .++..||+|.+.... ......+.+|+.+++.++||||+++            
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            46889999999999999999863    345789999987433 2334678899999999999999876            


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC
Q 039228          135 ------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL  172 (356)
Q Consensus       135 ------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~  172 (356)
                                                                +.++.+++.||.|||+.+   ++||||||+||+++.++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~nili~~~~  161 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQL  161 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcC---eehhccccceEEEcCCC
Confidence                                                      126678999999999999   99999999999999999


Q ss_pred             ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHH
Q 039228          173 FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       173 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~  251 (356)
                      .+||+|||+++.......  ........++..|+|||++.+..++.++|+||||+++|||++ |..||.....  ....+
T Consensus       162 ~~kl~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~--~~~~~  237 (283)
T cd05090         162 HVKISDLGLSREIYSADY--YRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN--QEVIE  237 (283)
T ss_pred             cEEeccccccccccCCcc--eecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHH
Confidence            999999999976533221  111222345678999999988889999999999999999998 9999864211  11111


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      ......           ....                   ...++..+.+++.+||+.||++||++.+|++.|..
T Consensus       238 ~~~~~~-----------~~~~-------------------~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         238 MVRKRQ-----------LLPC-------------------SEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHcCC-----------cCCC-------------------CCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence            111100           0000                   01234467899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=6.1e-36  Score=270.07  Aligned_cols=212  Identities=27%  Similarity=0.418  Sum_probs=160.3

Q ss_pred             ccccceecCceEEEEEEEC----CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           76 LINLIGVGSFDAVYQGVFD----LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        76 ~~~~lg~G~~g~Vy~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +.+.||.|.||.||+|.+.    ..+..|+||.++.... ...+.+.+|++.+++++||||+++                
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            5678999999999999998    4568899999965333 346789999999999999999997                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.|+.||+.||.|||+.+   ++|+||+++||+++.++.+||+|||++........ 
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~---iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~-  158 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNN---IIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSK-  158 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT---EEEST-SGGGEEEETTTEEEEESTTTGEETTTSSS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccc-
Confidence                                   568999999999999998   99999999999999999999999999986522111 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                       ............|+|||.+.+..++.++||||||+++|||++ |+.||....     .......        + .....
T Consensus       159 -~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~-----~~~~~~~--------~-~~~~~  223 (259)
T PF07714_consen  159 -YKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD-----NEEIIEK--------L-KQGQR  223 (259)
T ss_dssp             -EEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC-----HHHHHHH--------H-HTTEE
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccc--------c-ccccc
Confidence             122233456778999999988889999999999999999999 789986431     1111111        0 00000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      .                  ..+..++..+.+++..||+.||++|||+.+|++.|
T Consensus       224 ~------------------~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  224 L------------------PIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             T------------------TSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             c------------------eeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            0                  00113445678999999999999999999999986

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=1.5e-35  Score=280.45  Aligned_cols=167  Identities=22%  Similarity=0.248  Sum_probs=141.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|....+++.||+|++....   ......+..|+.++..++||||+++              
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            47999999999999999999999999999999997532   2234567889999999999999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.+......
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---ivHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~  157 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLG---FIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRT  157 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecCCCHHHeEECCCCCEEEeeccCcccccccccc
Confidence                                   347889999999999999   999999999999999999999999998754321100


Q ss_pred             -------------------------------CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          192 -------------------------------TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       192 -------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                                                     .........||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~  237 (363)
T cd05628         158 EFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (363)
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCC
Confidence                                           0001124579999999999999999999999999999999999999996


Q ss_pred             c
Q 039228          241 F  241 (356)
Q Consensus       241 ~  241 (356)
                      .
T Consensus       238 ~  238 (363)
T cd05628         238 S  238 (363)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=1.2e-35  Score=268.73  Aligned_cols=219  Identities=17%  Similarity=0.203  Sum_probs=167.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||+|++..........+.+|+.++++++||||+++                
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~   87 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEY   87 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeC
Confidence            3579999999999999999999998899999999975544455678889999999999999986                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.|++.||.|||+.+   |+||||+|+||+++.++.++|+|||++.......    
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~----  160 (267)
T cd06646          88 CGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKG---KMHRDIKGANILLTDNGDVKLADFGVAAKITATI----  160 (267)
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCCEEECcCccceeecccc----
Confidence                                 346789999999999998   9999999999999999999999999997653221    


Q ss_pred             cCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          194 SSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                      .......++..|+|||.+.   ...++.++|+|||||++|||++|..||......... .......+.       .+.+.
T Consensus       161 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~-~~~~~~~~~-------~~~~~  232 (267)
T cd06646         161 AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRAL-FLMSKSNFQ-------PPKLK  232 (267)
T ss_pred             cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhh-eeeecCCCC-------CCCCc
Confidence            1122356788999999874   345778999999999999999999998532211100 000000000       00000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                                          ........+.+++.+||..+|++||++++|++.|
T Consensus       233 --------------------~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         233 --------------------DKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             --------------------cccccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence                                0012234678999999999999999999998753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=2.2e-35  Score=272.02  Aligned_cols=242  Identities=21%  Similarity=0.253  Sum_probs=168.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|.+.+.||.|+||.||+|.+..+++.||+|.+..... .....+.+|+.+++.++||||+++               
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e   84 (301)
T cd07873           5 LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE   84 (301)
T ss_pred             ccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEe
Confidence            3579999999999999999999998999999999875432 234567789999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||++.......   
T Consensus        85 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~---  158 (301)
T cd07873          85 YLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPT---  158 (301)
T ss_pred             ccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHHHEEECCCCcEEECcCcchhccCCCC---
Confidence                                  337789999999999999   9999999999999999999999999997543221   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......++..|+|||++.+ ..++.++|||||||++|+|++|++||......  .....................+..
T Consensus       159 -~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
T cd07873         159 -KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVE--EQLHFIFRILGTPTEETWPGILSN  235 (301)
T ss_pred             -CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHcCCCChhhchhhhcc
Confidence             11223456889999998865 45788999999999999999999999743221  111111111111111111111100


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .... ....+.................+.+|+.+||+.||.+|||+.++++
T Consensus       236 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         236 EEFK-SYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             cccc-ccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            0000 0000000000000011123445789999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-35  Score=270.69  Aligned_cols=214  Identities=21%  Similarity=0.202  Sum_probs=164.5

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      +|++.+.||+|+||.||++.+..+++.||+|.+.....   .....+.+|+.+++.++||||+++               
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            48889999999999999999998899999999864321   223457789999999999999987               


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+||++++++.++|+|||++....... 
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-  156 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRER---IVYRDLKPENILLDDYGHIRISDLGLAVEIPEGE-  156 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHEEECCCCCEEEeeCCCceecCCCC-
Confidence                                    347789999999999999   9999999999999999999999999987643211 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......|+..|+|||++.+..++.++|||||||++|+|++|..||....... ......         ..+.... 
T Consensus       157 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~-~~~~~~---------~~~~~~~-  221 (285)
T cd05605         157 ----TIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV-KREEVE---------RRVKEDQ-  221 (285)
T ss_pred             ----ccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh-HHHHHH---------HHhhhcc-
Confidence                1123467899999999998889999999999999999999999997422110 000100         0000000 


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~~  323 (356)
                      ...                  .......+.+++.+||+.||++||     ++.++++.
T Consensus       222 ~~~------------------~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         222 EEY------------------SEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             ccc------------------CcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence            000                  012334578999999999999999     67777543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.1e-36  Score=280.09  Aligned_cols=214  Identities=18%  Similarity=0.246  Sum_probs=176.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      -++|..++.+|+|+||.+++++++..+..+++|.+.....  .......+|+.++++++|||||.+              
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence            3579999999999999999999999999999999975532  233467899999999999999987              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.|++.|+.|||+..   |+|||||+.|||+..++.++|+|||+|+.+...
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~---iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~  159 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENR---VLHRDLKCANIFLTKDKKVKLGDFGLAKILNPE  159 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhh---hhcccchhhhhhccccCceeecchhhhhhcCCc
Confidence                                      568999999999999888   999999999999999999999999999987643


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .    ......+||+.|++||.+.+.+|+.|+|||||||++|||++-+++|...     +....+..            .
T Consensus       160 ~----~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~-----~m~~Li~k------------i  218 (426)
T KOG0589|consen  160 D----SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKAS-----NMSELILK------------I  218 (426)
T ss_pred             h----hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCcc-----chHHHHHH------------H
Confidence            2    2455689999999999999999999999999999999999999999742     22222111            1


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +.....               ..+.....++..++..|++.+|..||++.+|+.+
T Consensus       219 ~~~~~~---------------Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  219 NRGLYS---------------PLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             hhccCC---------------CCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence            111100               0011344468899999999999999999999987

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.7e-35  Score=286.62  Aligned_cols=159  Identities=23%  Similarity=0.314  Sum_probs=137.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ..+|.+.+.||+|+||.||+|.+..+++.||||...      ...+.+|+.+|++++|+||+++                
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~  241 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK  241 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            457999999999999999999999999999999643      2345689999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           +.++.|++.||.|||+.+   ||||||||+|||++.++.++|+|||+++.......  .
T Consensus       242 ~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~--~  316 (461)
T PHA03211        242 YRSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEG---IIHRDIKTENVLVNGPEDICLGDFGAACFARGSWS--T  316 (461)
T ss_pred             cCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECcCCHHHEEECCCCCEEEcccCCceecccccc--c
Confidence                                 458899999999999999   99999999999999999999999999986533211  1


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                      .......||..|+|||++.+..++.++|||||||++|||++|..|+.
T Consensus       317 ~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf  363 (461)
T PHA03211        317 PFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLF  363 (461)
T ss_pred             ccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence            12234678999999999999999999999999999999999887653

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=6e-35  Score=262.08  Aligned_cols=212  Identities=21%  Similarity=0.306  Sum_probs=168.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|++|.||+|.+..++..|++|.+...  .......+.+|+.+++.++||||+++                
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            478889999999999999999999999999998643  23445678899999999999999987                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||+++....... 
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~---i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~-  156 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKK---ILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN-  156 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEeCCCCEEEcccccceeccCccc-
Confidence                                   347889999999999998   99999999999999999999999999886543221 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......++..|+|||+..+..++.++|+||||+++|+|++|+.||......     ....            .....
T Consensus       157 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~------------~~~~~  216 (256)
T cd08529         157 ---FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQG-----ALIL------------KIIRG  216 (256)
T ss_pred             ---hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH-----HHHH------------HHHcC
Confidence               122346788999999999988999999999999999999999999643211     1000            00000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...               .........+.+++.+||+.+|++||++.++++.
T Consensus       217 ~~~---------------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         217 VFP---------------PVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             CCC---------------CCccccCHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence            000               0001233467899999999999999999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=5.3e-36  Score=279.33  Aligned_cols=206  Identities=20%  Similarity=0.238  Sum_probs=159.7

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      +.||+|+||.||++.+..++..||+|++....   ......+..|+.++..++||||+++                    
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            36899999999999999999999999997532   2234567789999999999999986                    


Q ss_pred             -----------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 -----------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                       ..++.||+.||.|||+ .+   |+||||||+|||++.++.+||+|||+++......    ...
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~---ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~----~~~  153 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG----ATM  153 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCC---EEecCCCCCeEEECCCCCEEEecCCCCeecCCCC----ccc
Confidence                             3478899999999997 67   9999999999999999999999999987432211    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|+|++|..||.....     .......            ....... 
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~-----~~~~~~i------------~~~~~~~-  215 (325)
T cd05594         154 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKLFELI------------LMEEIRF-  215 (325)
T ss_pred             ccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCH-----HHHHHHH------------hcCCCCC-
Confidence            335689999999999999999999999999999999999999964211     1111100            0000000 


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVHD  323 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~~  323 (356)
                                     +......+.+++.+||+.||++|+     ++.++++.
T Consensus       216 ---------------p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         216 ---------------PRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             ---------------CCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence                           001223567899999999999997     88888753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=2.1e-35  Score=269.46  Aligned_cols=217  Identities=23%  Similarity=0.327  Sum_probs=167.1

Q ss_pred             CCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+|...+.||+|+||.||++...     .++..+|+|.+..........+.+|+.+++.++|+||+++            
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            45788899999999999999743     3467899999876655566789999999999999999876            


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          135 ----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       135 ----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                                                              +.++.|++.||+|||+.+   ++||||||+||++++++.+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~nil~~~~~~~  161 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLH---FVHRDLATRNCLVGQGLVV  161 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCC---eecccccHhhEEEcCCCCE
Confidence                                                    236679999999999999   9999999999999999999


Q ss_pred             EEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHH
Q 039228          175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~  253 (356)
                      +|+|||++........  ........+++.|+|||++.+..++.++|||||||++|||++ |.+||......  ..... 
T Consensus       162 kL~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~-  236 (280)
T cd05092         162 KIGDFGMSRDIYSTDY--YRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNT--EAIEC-  236 (280)
T ss_pred             EECCCCceeEcCCCce--eecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHH--HHHHH-
Confidence            9999999875432111  111223345678999999999999999999999999999998 99998642211  11000 


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                                 +.......                  .+..++..+.+++.+||+.||++||++.+|++.|+
T Consensus       237 -----------~~~~~~~~------------------~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~  279 (280)
T cd05092         237 -----------ITQGRELE------------------RPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ  279 (280)
T ss_pred             -----------HHcCccCC------------------CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence                       00000000                  00123446789999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=2.4e-35  Score=275.63  Aligned_cols=215  Identities=20%  Similarity=0.192  Sum_probs=161.1

Q ss_pred             CCCccccceecCceEEEEEEEC---CCCeEEEEEEeecc----CccchHHHHHHHHHHhhcC-CCChHHH----------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQ----CQGASKSFMAECKALKNIC-HRNLVRF----------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~-h~niv~l----------  134 (356)
                      +|++.+.||+|+||.||+++..   .+++.||+|++...    .....+.+..|+.++..++ ||||+++          
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            5889999999999999998874   46799999998643    1223456788999999995 8999986          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++....
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~  157 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLG---IVYRDIKLENILLDSEGHVVLTDFGLSKEFLS  157 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cEecCCCHHHeEECCCCCEEEeeCcCCccccc
Confidence                                       347789999999999999   99999999999999999999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...   .......||+.|+|||++.+. .++.++|||||||++|||++|..||....... ...........      .+
T Consensus       158 ~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~~~~~~~~~~------~~  227 (332)
T cd05614         158 EEK---ERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERN-TQSEVSRRILK------CD  227 (332)
T ss_pred             cCC---CccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCC-CHHHHHHHHhc------CC
Confidence            221   122345789999999999765 47889999999999999999999996432211 11111111000      00


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                      +.+.                      ......+.+++.+||+.||++||     +++++++
T Consensus       228 ~~~~----------------------~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         228 PPFP----------------------SFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             CCCC----------------------CCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            0000                      02233567899999999999999     6667764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-36  Score=281.22  Aligned_cols=208  Identities=25%  Similarity=0.310  Sum_probs=166.7

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      |.-++.||.|+||.||-|++..+.+.||||.++....   +....++.|+..|++++|||++.+                
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEY  107 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEY  107 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHH
Confidence            5556789999999999999999999999999975543   334578999999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..|+.+.+.||+|||+++   .||||||..|||+++.|.|||+|||.|...        
T Consensus       108 ClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~---~IHRDiKAGNILLse~g~VKLaDFGSAsi~--------  176 (948)
T KOG0577|consen  108 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN---RIHRDIKAGNILLSEPGLVKLADFGSASIM--------  176 (948)
T ss_pred             HhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhh---HHhhhccccceEecCCCeeeeccccchhhc--------
Confidence                                 236778999999999999   999999999999999999999999999754        


Q ss_pred             cCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          194 SSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                      ...+.++||+.|||||++.   .+.|+.++||||||++..|+.-.++|+..+..-  .....+...        -.|.+.
T Consensus       177 ~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAM--SALYHIAQN--------esPtLq  246 (948)
T KOG0577|consen  177 APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM--SALYHIAQN--------ESPTLQ  246 (948)
T ss_pred             CchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHH--HHHHHHHhc--------CCCCCC
Confidence            3445699999999999986   467999999999999999999999997654211  110001110        111121


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..                     +-...+.+++..||+.-|.+|||..+++..
T Consensus       247 s~---------------------eWS~~F~~Fvd~CLqKipqeRptse~ll~H  278 (948)
T KOG0577|consen  247 SN---------------------EWSDYFRNFVDSCLQKIPQERPTSEELLKH  278 (948)
T ss_pred             Cc---------------------hhHHHHHHHHHHHHhhCcccCCcHHHHhhc
Confidence            11                     333457899999999999999999988754

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=4.4e-35  Score=274.14  Aligned_cols=248  Identities=19%  Similarity=0.196  Sum_probs=172.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||.|+||.||+|....+++.||+|++....  ....+.+.+|+.+++.++||||+++              
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            367999999999999999999999999999999987542  2345677889999999999999976              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++......
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  160 (334)
T cd07855          84 YVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS  160 (334)
T ss_pred             EEEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEecccccceeeccc
Confidence                                      346789999999999999   999999999999999999999999999765433


Q ss_pred             CCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ............++..|+|||.+.+ ..++.++||||||+++|+|++|+.||......  ................+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~--~~~~~~~~~~g~~~~~~~~~  238 (334)
T cd07855         161 PTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYV--HQLKLILSVLGSPSEEVLNR  238 (334)
T ss_pred             CcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChH--HHHHHHHHHhCCChhHhhhh
Confidence            3222222334578889999998865 45889999999999999999999999643211  11111111111111111110


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .............+......+..........+.+++.+||+.+|++||++.+++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  294 (334)
T cd07855         239 IGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQH  294 (334)
T ss_pred             hchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            00000000000000000000000011335578999999999999999999998873

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.5e-35  Score=274.60  Aligned_cols=205  Identities=20%  Similarity=0.208  Sum_probs=157.7

Q ss_pred             ccceecCceEEEEEEEC---CCCeEEEEEEeeccC----ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           78 NLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQC----QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +.||+|+||.||+++..   .+++.||+|++....    ......+..|+.+++.++||||+++                
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            57999999999999864   467899999987431    2233467789999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++......    
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----  154 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQG---IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEG----  154 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEeeCcCCeecccCC----
Confidence                                 236779999999999999   9999999999999999999999999987432211    


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                      .......||+.|+|||++.+..++.++|||||||++|||++|+.||.....     .......            +....
T Consensus       155 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~-----~~~~~~~------------~~~~~  217 (323)
T cd05584         155 TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR-----KKTIDKI------------LKGKL  217 (323)
T ss_pred             CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH-----HHHHHHH------------HcCCC
Confidence            122335689999999999988899999999999999999999999964211     1111111            11000


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                      .                .+......+.+++.+||+.||++||     ++.++++
T Consensus       218 ~----------------~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         218 N----------------LPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             C----------------CCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence            0                0002233568999999999999999     7787766

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.2e-35  Score=278.74  Aligned_cols=156  Identities=24%  Similarity=0.358  Sum_probs=134.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ...+|++.+.||+|+||.||+|....++..||+|+....      ....|+.++++++||||+++               
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  137 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLP  137 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEE
Confidence            346799999999999999999999989999999985422      23569999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.||+.||.|||+++   |+||||||+|||++.++.++|+|||+++.....    
T Consensus       138 ~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~----  210 (357)
T PHA03209        138 HYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQR---IIHRDVKTENIFINDVDQVCIGDLGAAQFPVVA----  210 (357)
T ss_pred             ccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEecCccccccccC----
Confidence                                  347889999999999999   999999999999999999999999999743221    


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCC
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI  239 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf  239 (356)
                       .......||..|+|||++.+..++.++|||||||++|||+++..|+
T Consensus       211 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        211 -PAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             -cccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence             1223456899999999999999999999999999999999865554

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.5e-35  Score=271.83  Aligned_cols=223  Identities=21%  Similarity=0.300  Sum_probs=169.6

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      ...++|++.+.||+|+||.||+|.....     ...+|+|.+.... ......+.+|+.++.++ +|+||+++       
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            3456799999999999999999997643     3789999987532 23345688999999999 79999865       


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.|++.||.|||+.+   |+||||||+||++
T Consensus        89 ~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~Nil~  165 (293)
T cd05053          89 GPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKK---CIHRDLAARNVLV  165 (293)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCC---ccccccceeeEEE
Confidence                                                          137889999999999998   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~  247 (356)
                      +.++.++|+|||+++........  .......++..|+|||++.+..++.++|||||||++|||++ |..||.....   
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---  240 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYY--RKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV---  240 (293)
T ss_pred             cCCCeEEeCccccccccccccce--eccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCH---
Confidence            99999999999999865432211  11122334677999999988889999999999999999998 9999863211   


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                        .+...         .+.......                  .+..+...+.+|+.+||+.||++|||+.++++.|+.+
T Consensus       241 --~~~~~---------~~~~~~~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~  291 (293)
T cd05053         241 --EELFK---------LLKEGYRME------------------KPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRM  291 (293)
T ss_pred             --HHHHH---------HHHcCCcCC------------------CCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHh
Confidence              11111         111100000                  0113344678999999999999999999999999887


Q ss_pred             h
Q 039228          328 N  328 (356)
Q Consensus       328 ~  328 (356)
                      .
T Consensus       292 ~  292 (293)
T cd05053         292 L  292 (293)
T ss_pred             h
Confidence            4

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=2.8e-35  Score=266.43  Aligned_cols=221  Identities=21%  Similarity=0.386  Sum_probs=168.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCe---EEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRA---VVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~---~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|+..+.||+|+||.||+|....++.   .+|+|.+.... ....+.+..|+.++++++||||+++            
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            3568889999999999999999875543   79999986542 2335678899999999999999876            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.+++.||.|||+.+   ++|+||||+||+++.++.++|+|||++......
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~  160 (268)
T cd05063          84 ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMN---YVHRDLAARNILVNSNLECKVSDFGLSRVLEDD  160 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccccchhhEEEcCCCcEEECCCccceecccc
Confidence                                      457889999999999999   999999999999999999999999999765432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .... ........+..|+|||++.+..++.++|||||||++|||++ |..||.....     ......         +..
T Consensus       161 ~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~-----~~~~~~---------i~~  225 (268)
T cd05063         161 PEGT-YTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN-----HEVMKA---------IND  225 (268)
T ss_pred             cccc-eeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH-----HHHHHH---------Hhc
Confidence            2111 11111223457999999988889999999999999999998 9999864221     111111         110


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ......                  ...++..+.+++.+||+.+|++||++.+|++.|+++
T Consensus       226 ~~~~~~------------------~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         226 GFRLPA------------------PMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             CCCCCC------------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            000000                  012344678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=3.2e-35  Score=270.46  Aligned_cols=216  Identities=19%  Similarity=0.203  Sum_probs=170.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ..+|++.+.||+|+||.||+|++..+++.||+|.+........+.+.+|+.+++.++|||++++                
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecc
Confidence            4579999999999999999999988899999999986655556788899999999999999987                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||++.......    .
T Consensus        99 ~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~g---i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~----~  171 (296)
T cd06654          99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ----S  171 (296)
T ss_pred             cCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEECccccchhccccc----c
Confidence                                457789999999999999   9999999999999999999999999987543221    1


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ......+++.|+|||.+.+..++.++|||||||++|+|++|+.||....... .+........         +.+. .  
T Consensus       172 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~-~~~~~~~~~~---------~~~~-~--  238 (296)
T cd06654         172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATNGT---------PELQ-N--  238 (296)
T ss_pred             ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH-hHHHHhcCCC---------CCCC-C--
Confidence            1223467889999999998889999999999999999999999996422111 0000000000         0000 0  


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                       .......+.+++.+||..+|++||++.+|+..
T Consensus       239 -----------------~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         239 -----------------PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             -----------------ccccCHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence                             01233457889999999999999999999973

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=3.6e-35  Score=272.76  Aligned_cols=204  Identities=22%  Similarity=0.218  Sum_probs=155.3

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhh-cCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKN-ICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~-l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|+++...   ....+.+..|..++.. .+||||+++                   
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999999999999999997532   2233455667777764 479999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++......    ...
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~----~~~  153 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKG---IIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE----GKA  153 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC----Ccc
Confidence                              347889999999999999   9999999999999999999999999997542211    223


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|||++|..||.....     .......        ...  ....+  
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~-----~~~~~~i--------~~~--~~~~~--  216 (316)
T cd05592         154 STFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE-----DELFDSI--------LND--RPHFP--  216 (316)
T ss_pred             ccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH-----HHHHHHH--------HcC--CCCCC--
Confidence            346789999999999998999999999999999999999999974321     1111110        000  00000  


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH-HHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP-NAV  321 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~-~vl  321 (356)
                                      ......+.+++.+||+.||.+||++. +++
T Consensus       217 ----------------~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         217 ----------------RWISKEAKDCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             ----------------CCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence                            01233567899999999999999875 453

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=4.5e-35  Score=263.95  Aligned_cols=213  Identities=23%  Similarity=0.327  Sum_probs=162.5

Q ss_pred             cceecCceEEEEEEEC--CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------------
Q 039228           79 LIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~--~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------------  134 (356)
                      .||+|+||.||+|.+.  .++..||+|++..... ...+.+.+|+.++++++||||+++                     
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L   81 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPL   81 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCH
Confidence            4899999999999875  4456799999875433 234568899999999999999976                     


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCC
Q 039228          135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG  198 (356)
Q Consensus       135 ----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  198 (356)
                                      +.++.+++.||.|||+++   ++||||||+||+++.++.+||+|||++.......... .....
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~  157 (257)
T cd05115          82 NKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYY-KARSA  157 (257)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcC---eeecccchheEEEcCCCcEEeccCCccccccCCccce-eccCC
Confidence                            457889999999999999   9999999999999999999999999997554322211 11112


Q ss_pred             ccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       199 ~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ..++..|+|||.+.+..++.++||||||+++|++++ |..||......  ....            .+........    
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~------------~~~~~~~~~~----  219 (257)
T cd05115         158 GKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGP--EVMS------------FIEQGKRLDC----  219 (257)
T ss_pred             CCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHH--HHHH------------HHHCCCCCCC----
Confidence            233568999999988889999999999999999996 99999743211  1111            1111100000    


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                                    +..++..+.+++.+||..+|++||++.+|.+.|+.+
T Consensus       220 --------------~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         220 --------------PAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             --------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence                          013445678999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=3.4e-35  Score=264.22  Aligned_cols=210  Identities=24%  Similarity=0.390  Sum_probs=165.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .+|++.+.||+|+||.||+|...  +..||+|.+...  ...+.+.+|+.++++++|+|++++                 
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~--~~~~~~k~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~   81 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   81 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc--CCcEEEEEeCCC--chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEEC
Confidence            46899999999999999999876  678999998643  234678899999999999999986                 


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.+++.||+|||+++   ++||||||+||+++.++.+||+|||++.......  
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~--  156 (256)
T cd05082          82 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ--  156 (256)
T ss_pred             CCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccccchheEEEcCCCcEEecCCccceeccccC--
Confidence                                   457889999999999999   9999999999999999999999999987543211  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                           ....++..|+|||++.+..++.++|||||||++|+|++ |+.||...     .........         .....
T Consensus       157 -----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~-----~~~~~~~~~---------~~~~~  217 (256)
T cd05082         157 -----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-----PLKDVVPRV---------EKGYK  217 (256)
T ss_pred             -----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHH---------hcCCC
Confidence                 12334567999999998889999999999999999997 99998632     111111110         00000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ..                  ....++..+.+++.+||+.+|++|||+.++++.|+.+
T Consensus       218 ~~------------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         218 MD------------------APDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             CC------------------CCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            00                  0013345678999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=2.4e-35  Score=265.50  Aligned_cols=214  Identities=20%  Similarity=0.329  Sum_probs=165.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ++|++.+.||+|+||.||.|.+... ..+|+|.+.... .....+.+|+.++++++||||+++                 
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~-~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQ-YDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCC-CcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcC
Confidence            4688899999999999999987643 569999886432 334678999999999999999987                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           +.++.+|+.||.|||+.+   ++|+||||+||+++.++.+||+|||.++.......   
T Consensus        82 ~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~---  155 (256)
T cd05113          82 SNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQ---FIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY---  155 (256)
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCCEEECCCccceecCCCce---
Confidence                                 458889999999999999   99999999999999999999999999875532211   


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      .......++..|++||++.+..++.++||||||+++|+|++ |..||......  ......           .. .....
T Consensus       156 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~--~~~~~~-----------~~-~~~~~  221 (256)
T cd05113         156 TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNS--ETVEKV-----------SQ-GLRLY  221 (256)
T ss_pred             eecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHH--HHHHHH-----------hc-CCCCC
Confidence            11122345678999999988889999999999999999999 99998643211  010100           00 00000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      ..                  ......+.+++.+||+.+|.+||++.+|++.|+
T Consensus       222 ~~------------------~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         222 RP------------------HLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             CC------------------CCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            00                  012346789999999999999999999998773

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.9e-35  Score=268.20  Aligned_cols=235  Identities=20%  Similarity=0.296  Sum_probs=173.0

Q ss_pred             CCCCccccceecCceEEEEEEECC----CCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..    ++..||+|.+...... ..+.+.+|+.+++.++||||+++            
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            457888999999999999999753    4789999999755443 45679999999999999999986            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.+++.||.|||+.+   ++|+||||+||+++.++.++|+|||.+....
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  160 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQR---YIHRDLAARNILVESEDLVKISDFGLAKVLP  160 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccccccccc
Confidence                                        347789999999999999   9999999999999999999999999998664


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC-chHHHh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN-RVMDIV  265 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~  265 (356)
                      ..... ........++..|++||.+.+..++.++||||||+++|||++|..|+.........   +....... ....+.
T Consensus       161 ~~~~~-~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~  236 (284)
T cd05038         161 EDKDY-YYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLR---MIGIAQGQMIVTRLL  236 (284)
T ss_pred             cCCcc-eeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcc---ccccccccccHHHHH
Confidence            22211 11111233456799999998888999999999999999999999998643221111   00000000 011111


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      + .+.....              ......++..+.+++.+||+.+|++||||.+|+++|+.+.
T Consensus       237 ~-~~~~~~~--------------~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i~  284 (284)
T cd05038         237 E-LLKEGER--------------LPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRLR  284 (284)
T ss_pred             H-HHHcCCc--------------CCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhcC
Confidence            1 1110000              0001134467889999999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.4e-35  Score=282.55  Aligned_cols=160  Identities=26%  Similarity=0.356  Sum_probs=136.5

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CC-----ChHHH------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HR-----NLVRF------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l------------  134 (356)
                      +|.+.++||+|.||.|.+|.+..|++.||||+++.. .....+...|+.+|..|+ |.     |+|++            
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            578999999999999999999999999999999754 334456678999999997 42     67765            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC--CCceEEcccccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN--DLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~  186 (356)
                                                ..++.||+.||.+||+.+   |||+||||+||||.+  ...+||+|||.+.+..
T Consensus       266 VfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~---IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~  342 (586)
T KOG0667|consen  266 VFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELG---IIHCDLKPENILLKDPKRSRIKVIDFGSSCFES  342 (586)
T ss_pred             eehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCChhheeeccCCcCceeEEecccccccC
Confidence                                      347889999999999999   999999999999964  4479999999998654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccc
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF  243 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~  243 (356)
                      ...       -....+..|+|||++.|.+|+.+.||||||||+.||++|.+.|.+..
T Consensus       343 q~v-------ytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~n  392 (586)
T KOG0667|consen  343 QRV-------YTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDN  392 (586)
T ss_pred             Ccc-------eeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCC
Confidence            321       14667889999999999999999999999999999999988887543

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=4.3e-35  Score=272.70  Aligned_cols=202  Identities=23%  Similarity=0.216  Sum_probs=156.1

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhc-CCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNI-CHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.++.+++.||+|++...   .......+..|..++..+ +||||+++                   
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999999999999999998743   223345677888888876 69999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   |+||||||+|||++.++.++|+|||+++.....    ....
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~---ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~----~~~~  153 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFN----GKTT  153 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeeCCCCeecCcC----CCcc
Confidence                              347789999999999999   999999999999999999999999998753211    1122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|+|++|+.||.....     .......            ....... 
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-----~~~~~~i------------~~~~~~~-  215 (320)
T cd05590         154 STFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE-----DDLFEAI------------LNDEVVY-  215 (320)
T ss_pred             cccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHHHHHH------------hcCCCCC-
Confidence            345789999999999998999999999999999999999999964221     1111111            1000000 


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPN  319 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~  319 (356)
                                     +......+.+++.+||+.||++||++.+
T Consensus       216 ---------------~~~~~~~~~~li~~~L~~dP~~R~~~~~  243 (320)
T cd05590         216 ---------------PTWLSQDAVDILKAFMTKNPTMRLGSLT  243 (320)
T ss_pred             ---------------CCCCCHHHHHHHHHHcccCHHHCCCCCC
Confidence                           0012235689999999999999999833

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=2.6e-35  Score=274.57  Aligned_cols=205  Identities=22%  Similarity=0.235  Sum_probs=158.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCC-hHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRN-LVRF--------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~n-iv~l--------------  134 (356)
                      +|++.+.||+|+||.||+|.+..+++.||+|++....   ....+.+..|..++..++|++ |+++              
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            5889999999999999999999999999999997532   234466788999999998765 5544              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++......   
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~---  154 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDAEGHIKIADFGMCKENIFG---  154 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEEcCCCCEEEeecCcceecCCC---
Confidence                                   347889999999999999   999999999999999999999999998643211   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       ........||+.|+|||++.+..++.++|||||||++|+|++|+.||.....     ......        +.....  
T Consensus       155 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~-----~~~~~~--------i~~~~~--  218 (324)
T cd05587         155 -GKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE-----DELFQS--------IMEHNV--  218 (324)
T ss_pred             -CCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHH--------HHcCCC--
Confidence             1122345689999999999999999999999999999999999999964221     111110        000000  


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      ...                  ......+.+++.+||..||.+||+.
T Consensus       219 ~~~------------------~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         219 SYP------------------KSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             CCC------------------CCCCHHHHHHHHHHhhcCHHHcCCC
Confidence            000                  0122356789999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=2.7e-35  Score=266.43  Aligned_cols=216  Identities=19%  Similarity=0.238  Sum_probs=166.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ++|.+.+.||+|+||.||+|.+..+++.||+|.++.........+.+|+.+++.++||||+++                 
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            468889999999999999999998999999999976654455668889999999999999886                 


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   ++|+||||+||+++.++.++|+|||++.......    .
T Consensus        89 ~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~----~  161 (267)
T cd06645          89 GGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKG---KMHRDIKGANILLTDNGHVKLADFGVSAQITATI----A  161 (267)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEECcceeeeEccCcc----c
Confidence                                347889999999999999   9999999999999999999999999987553221    1


Q ss_pred             CCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          195 SSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ......|+..|+|||++.   ...++.++|+|||||++|+|++|..||....... ...........       .+....
T Consensus       162 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~-~~~~~~~~~~~-------~~~~~~  233 (267)
T cd06645         162 KRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMR-ALFLMTKSNFQ-------PPKLKD  233 (267)
T ss_pred             ccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchh-hHHhhhccCCC-------CCcccc
Confidence            223456889999999874   4568889999999999999999999985322111 00000000000       000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                          .......+.+++.+||+.+|++||++++|++
T Consensus       234 --------------------~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         234 --------------------KMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             --------------------cCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence                                0012235678999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.9e-35  Score=275.09  Aligned_cols=206  Identities=23%  Similarity=0.241  Sum_probs=158.3

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|++..+++.||+|++....   ......+..|..++..+ +||||+++                   
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36899999999999999999999999987532   23345677888888865 79999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......    ...
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~----~~~  153 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHG---VIYRDLKLDNILLDAEGHCKLADFGMCKEGILNG----VTT  153 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeecccceecccCC----ccc
Confidence                              347889999999999999   9999999999999999999999999987532211    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|+|++|+.||.....     ......            .......  
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~-----~~~~~~------------i~~~~~~--  214 (321)
T cd05591         154 TTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE-----DDLFES------------ILHDDVL--  214 (321)
T ss_pred             cccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH-----HHHHHH------------HHcCCCC--
Confidence            345689999999999998999999999999999999999999974321     111111            1110000  


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-------ChHHHHHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-------NVPNAVHD  323 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-------s~~~vl~~  323 (356)
                         .           +......+.+++.+||+.||++||       ++.++++.
T Consensus       215 ---~-----------p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         215 ---Y-----------PVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             ---C-----------CCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence               0           001223567899999999999999       66777643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.1e-35  Score=281.10  Aligned_cols=237  Identities=20%  Similarity=0.201  Sum_probs=167.4

Q ss_pred             cCCCCccccceecCceEEEEEEECC--CCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL--NRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..+|.+.+.||.|+||.||+|....  ++..||+|.+...     ....+|+.+|+.++||||+++              
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~  165 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVM  165 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEe
Confidence            4579999999999999999997643  4678999987633     335689999999999999987              


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.|++.||.|||+.+   |+||||||+|||++.++.++|+|||++........  
T Consensus       166 e~~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~g---ivHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~--  240 (392)
T PHA03207        166 PKYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRG---IIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPD--  240 (392)
T ss_pred             hhcCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEccCccccccCcccc--
Confidence                                  457889999999999999   99999999999999999999999999976543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC--ccHHHHHHHh------CCCch-HH
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD--LNLHNFARMA------FPNRV-MD  263 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~--~~~~~~~~~~------~~~~~-~~  263 (356)
                      ........||+.|+|||++.+..++.++|||||||++|||++|+.||.......  ..+.......      ++... ..
T Consensus       241 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~  320 (392)
T PHA03207        241 TPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTN  320 (392)
T ss_pred             cccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchh
Confidence            122234678999999999999999999999999999999999999996543221  1111111111      11100 00


Q ss_pred             Hhhhhhccccccccc-cccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          264 IVNLVLLNDNKVLAG-TNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +....-.-....+.. ..+..+..      ......+.+++.+||..||++|||+.+++..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        321 LCKHFKQYAIVLRPPYTIPPVIRK------YGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             HHHHHHhhcccccCCccccchhhc------cCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence            000000000000000 00000000      0123356789999999999999999999875

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.5e-35  Score=276.84  Aligned_cols=157  Identities=24%  Similarity=0.343  Sum_probs=133.8

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|++....   ......+..|+.++.++ +||||+++                   
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            36899999999999999999999999997542   23345677888888776 79999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||+++......    ...
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~----~~~  153 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG----DTT  153 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCCEEEeeCCccccccCCC----Ccc
Confidence                              347789999999999999   9999999999999999999999999987432211    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      ....||..|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~  198 (329)
T cd05618         154 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             ccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCcc
Confidence            346789999999999999999999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.6e-35  Score=282.15  Aligned_cols=166  Identities=23%  Similarity=0.282  Sum_probs=139.6

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .|++++.||+|+||.||+|+...+++.||+|++....   ......+.+|+.+++.++||||+++               
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            5889999999999999999999999999999987432   2334568889999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC--
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN--  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~--  190 (356)
                                            ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++..+.....  
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~---ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~  158 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSK  158 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEeECCCCcccccccccc
Confidence                                  346789999999999999   99999999999999999999999999753211000  


Q ss_pred             -----------------------------------------CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHH
Q 039228          191 -----------------------------------------PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILL  229 (356)
Q Consensus       191 -----------------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l  229 (356)
                                                               ..........||+.|+|||++.+..++.++|||||||++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil  238 (382)
T cd05625         159 YYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL  238 (382)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHH
Confidence                                                     000011235789999999999999999999999999999


Q ss_pred             HHHHcCCCCCCc
Q 039228          230 LEMVTRRKPIDF  241 (356)
Q Consensus       230 ~elltg~~Pf~~  241 (356)
                      |||++|+.||..
T Consensus       239 ~elltG~~Pf~~  250 (382)
T cd05625         239 YEMLVGQPPFLA  250 (382)
T ss_pred             HHHHhCCCCCCC
Confidence            999999999964

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.8e-35  Score=263.40  Aligned_cols=217  Identities=18%  Similarity=0.226  Sum_probs=167.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-----cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-----GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|.+.+.||+|++|.||.|....+++.||+|.+.....     ...+.+.+|+.++++++||||+++            
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            579999999999999999999998899999999864321     123567889999999999999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||+++......
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~  158 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC  158 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceeccccc
Confidence                                     347789999999999999   9999999999999999999999999997653321


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                      .. ........++..|+|||.+.+..++.++||||||+++|+|++|+.||.....    .......         .....
T Consensus       159 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~---------~~~~~  224 (263)
T cd06625         159 SS-GTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEA----MAAIFKI---------ATQPT  224 (263)
T ss_pred             cc-cccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccch----HHHHHHH---------hccCC
Confidence            11 1111235577899999999998899999999999999999999999864211    1111000         00000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...                  .+......+.+++.+||..+|++|||+.++++.
T Consensus       225 ~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         225 NPQ------------------LPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             CCC------------------CCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            000                  001233457899999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=7e-35  Score=262.89  Aligned_cols=215  Identities=24%  Similarity=0.397  Sum_probs=167.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ++|.+...||+|+||.||+|.+..+ ..+|+|.+.... ...+.+.+|+.++++++|||++++                 
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~-~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~   83 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGT-TKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMG   83 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCC-ceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCC
Confidence            5688999999999999999998765 469999876432 234678899999999999999876                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   ++|+||+|+||++++++.++|+|||++........   
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~---  157 (260)
T cd05069          84 KGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMN---YIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY---  157 (260)
T ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccCcceEEEcCCCeEEECCCccceEccCCcc---
Confidence                                 357789999999999999   99999999999999999999999999976533221   


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      .......++..|+|||+..+..++.++||||||+++|+|++ |..||......  ...........            ..
T Consensus       158 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~~------------~~  223 (260)
T cd05069         158 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNR--EVLEQVERGYR------------MP  223 (260)
T ss_pred             cccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC------------CC
Confidence            11222345678999999998889999999999999999999 99998643211  11111100000            00


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                                        .....+..+.+++.+||+.||++||++++|++.|+.
T Consensus       224 ------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         224 ------------------CPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             ------------------CCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                              001234467899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=3.2e-35  Score=273.87  Aligned_cols=205  Identities=21%  Similarity=0.227  Sum_probs=157.9

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcC-CCChHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNIC-HRNLVRF--------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h~niv~l--------------  134 (356)
                      +|.+.+.||+|+||.||+|++..+++.||+|++....   ......+..|..++..+. |++|+++              
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            5888999999999999999999999999999987542   223345677888887774 7777765              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....   
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~---  154 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENMWD---  154 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEecCCCHHHeEECCCCcEEEccCCCceecCCC---
Confidence                                   457889999999999999   999999999999999999999999998743211   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       ........||+.|+|||++.+..++.++|||||||++|||++|+.||......     .....        +.....  
T Consensus       155 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~-----~~~~~--------i~~~~~--  218 (323)
T cd05616         155 -GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-----ELFQS--------IMEHNV--  218 (323)
T ss_pred             -CCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHH-----HHHHH--------HHhCCC--
Confidence             11223466899999999999999999999999999999999999999742211     11111        000000  


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      ..+                  ......+.+++.+|++.||.+|++.
T Consensus       219 ~~p------------------~~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         219 AYP------------------KSMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             CCC------------------CcCCHHHHHHHHHHcccCHHhcCCC
Confidence            000                  0223356899999999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.2e-35  Score=279.87  Aligned_cols=169  Identities=23%  Similarity=0.289  Sum_probs=142.8

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      +....++|++.+.||+|+||.||+|.+..+++.||+|++...   .......+..|+.+++.++||||+++         
T Consensus        38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~  117 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKY  117 (370)
T ss_pred             cCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCE
Confidence            344567899999999999999999999999999999998642   12234567789999999999999987         


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++.....
T Consensus       118 ~~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~---IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~  194 (370)
T cd05621         118 LYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMG---LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE  194 (370)
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEEecccceeccc
Confidence                                       347789999999999999   99999999999999999999999999986532


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCC----CCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSE----VSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      ..   ........||+.|+|||++.+..    ++.++|||||||++|+|++|..||..
T Consensus       195 ~~---~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~  249 (370)
T cd05621         195 TG---MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYA  249 (370)
T ss_pred             CC---ceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCC
Confidence            21   11223467899999999987543    78899999999999999999999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1e-35  Score=277.94  Aligned_cols=215  Identities=18%  Similarity=0.162  Sum_probs=164.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|.+.+.||+|+||.||+|.+..+++.||+|+++...   ....+.+..|+.+++.++||||+++              
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            46999999999999999999999999999999997542   2234567889999999999999987              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++........
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~  157 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMG---YVHRDIKPENVLIDRTGHIKLADFGSAARLTANKM  157 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEcccCchHheEECCCCCEEeccCCCCeECCCCCc
Confidence                                    236789999999999999   99999999999999999999999999976543221


Q ss_pred             CCccCCCCccccccccchhhhc------CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          191 PTQSSSNGVRRTIGYTALDYDL------GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                         .......||+.|+|||++.      ...++.++|||||||++|+|++|..||.....     .....        .+
T Consensus       158 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~-----~~~~~--------~i  221 (330)
T cd05601         158 ---VNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS-----AKTYN--------NI  221 (330)
T ss_pred             ---eeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCH-----HHHHH--------HH
Confidence               1222346899999999986      45678999999999999999999999964221     11111        11


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..........                ........+.+|+..|+. +|.+||++.+++.
T Consensus       222 ~~~~~~~~~~----------------~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         222 MNFQRFLKFP----------------EDPKVSSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             HcCCCccCCC----------------CCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence            1000000000                000223356789999997 9999999999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=5.5e-35  Score=269.75  Aligned_cols=221  Identities=21%  Similarity=0.276  Sum_probs=168.6

Q ss_pred             cCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l---------  134 (356)
                      .++|.+.+.||+|+||.||+|.+.     .++..||+|.++... ....+.+.+|+.+++++ +||||+++         
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            346999999999999999999852     345689999987543 23345788999999999 79999987         


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ..++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||+++.
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~l~dfg~~~~  190 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNVLLTHGKIVKICDFGLARD  190 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eehhhhccceEEEcCCCeEEECCCccccc
Confidence                                          347789999999999998   99999999999999999999999999975


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ......  ........++..|+|||.+.+..++.++|||||||++|+|++ |..||....... .+..            
T Consensus       191 ~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~-~~~~------------  255 (302)
T cd05055         191 IMNDSN--YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDS-KFYK------------  255 (302)
T ss_pred             ccCCCc--eeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchH-HHHH------------
Confidence            533221  111223345778999999998889999999999999999998 999986432111 1111            


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .+.........                  ......+.+++.+||+.+|++|||+.+|++.|++.
T Consensus       256 ~~~~~~~~~~~------------------~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         256 LIKEGYRMAQP------------------EHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HHHcCCcCCCC------------------CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            11111100000                  01223578999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-35  Score=262.60  Aligned_cols=217  Identities=20%  Similarity=0.267  Sum_probs=170.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||.|+||.||+|.+..+++.+++|.+........+.+.+|+.++++++||||+++                
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence            3679999999999999999999988889999999986655566789999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......   
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~---  155 (262)
T cd06613          82 CGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETG---KIHRDIKGANILLTEDGDVKLADFGVSAQLTATI---  155 (262)
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC---ceecCCChhhEEECCCCCEEECccccchhhhhhh---
Confidence                                  347889999999999999   9999999999999999999999999987654321   


Q ss_pred             ccCCCCccccccccchhhhcCC---CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDLGS---EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~---~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                       .......++..|+|||.+.+.   .++.++|+||||+++|+|++|..||....... .........+..       .. 
T Consensus       156 -~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~-~~~~~~~~~~~~-------~~-  225 (262)
T cd06613         156 -AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMR-ALFLISKSNFPP-------PK-  225 (262)
T ss_pred             -hccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhccCCC-------cc-
Confidence             122335678889999998776   78899999999999999999999986432111 000000000000       00 


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                         .......+..+.+++.+||..+|.+|||+.+|+.
T Consensus       226 -------------------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         226 -------------------LKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             -------------------ccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                               0011134456889999999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=292.22  Aligned_cols=222  Identities=21%  Similarity=0.373  Sum_probs=180.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCC---eEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNR---AVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~---~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ...+|.++||.|.||.||.|+++..+   ..||||.++....+ ....|+.|+.||.+++||||++|             
T Consensus       629 s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIi  708 (996)
T KOG0196|consen  629 SCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMII  708 (996)
T ss_pred             hheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEE
Confidence            45678899999999999999997654   57999999866544 44679999999999999999987             


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++++|+.|+.||.+.+   +|||||.+.|||++.+..+|++|||+++.+.+..
T Consensus       709 TEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~---YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~  785 (996)
T KOG0196|consen  709 TEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  785 (996)
T ss_pred             hhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcC---chhhhhhhhheeeccceEEEeccccceeecccCC
Confidence                                     568899999999999999   9999999999999999999999999999876554


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .. .....+..-...|.|||.+...+++.+||||||||+|||.++ |..||=++...+  ....            +...
T Consensus       786 ~~-~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQd--VIka------------Ie~g  850 (996)
T KOG0196|consen  786 EA-AYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD--VIKA------------IEQG  850 (996)
T ss_pred             Cc-cccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHH--HHHH------------HHhc
Confidence            22 222233334678999999999999999999999999999887 999985443221  1111            1111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      ..                  ..-+.+|+..|.+||+.||+.|-..||.+.+|+.+|+++..
T Consensus       851 yR------------------LPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIr  893 (996)
T KOG0196|consen  851 YR------------------LPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIR  893 (996)
T ss_pred             cC------------------CCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhc
Confidence            11                  11223899999999999999999999999999999988753

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=4.2e-35  Score=265.54  Aligned_cols=221  Identities=22%  Similarity=0.386  Sum_probs=168.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCe---EEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRA---VVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~---~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..++.   .||+|.+... .....+.+..|+.+++.++||||+++             
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            458889999999999999999876543   6999998754 23345679999999999999999987             


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++.......
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g---~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~  160 (269)
T cd05065          84 TEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT  160 (269)
T ss_pred             EecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccChheEEEcCCCcEEECCCccccccccCc
Confidence                                     457789999999999999   9999999999999999999999999987654322


Q ss_pred             CCCc-cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          190 NPTQ-SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       190 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .... ........+..|+|||++.+..++.++|||||||++|||++ |..||......  ..........          
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~--~~~~~i~~~~----------  228 (269)
T cd05065         161 SDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ--DVINAIEQDY----------  228 (269)
T ss_pred             cccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHH--HHHHHHHcCC----------
Confidence            1111 11111112457999999998899999999999999999887 99998642211  1111111000          


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                        ..                  .....++..+.+++..||+.+|++||++.+|+..|+++
T Consensus       229 --~~------------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         229 --RL------------------PPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             --cC------------------CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence              00                  00013344678999999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=6.9e-35  Score=269.12  Aligned_cols=223  Identities=21%  Similarity=0.300  Sum_probs=169.4

Q ss_pred             cCCCCccccceecCceEEEEEEEC-------CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD-------LNRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      .++|.+.+.||+|+||.||+|...       ..+..||+|.+.... ......+.+|+.+++.+ +||||+++       
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            456889999999999999999752       234579999986432 23446788999999999 79999986       


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.||+.||.|||+++   ++||||||+||++
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nili  170 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQK---CIHRDLAARNVLV  170 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCC---eeecccccceEEE
Confidence                                                          124669999999999999   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~  247 (356)
                      +.++.+||+|||+++........  .......++..|+|||++.+..++.++||||||+++|+|++ |..||....    
T Consensus       171 ~~~~~~kl~D~g~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~----  244 (304)
T cd05101         171 TENNVMKIADFGLARDVNNIDYY--KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP----  244 (304)
T ss_pred             cCCCcEEECCCccceeccccccc--ccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC----
Confidence            99999999999999865432211  11222345678999999988889999999999999999998 788875321    


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                       ........         .......                  ....++..+.+++.+||+.+|++|||+.+|++.|+++
T Consensus       245 -~~~~~~~~---------~~~~~~~------------------~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~  296 (304)
T cd05101         245 -VEELFKLL---------KEGHRMD------------------KPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRI  296 (304)
T ss_pred             -HHHHHHHH---------HcCCcCC------------------CCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHH
Confidence             11111111         0000000                  0013445678999999999999999999999999887


Q ss_pred             hhh
Q 039228          328 NNI  330 (356)
Q Consensus       328 ~~~  330 (356)
                      ...
T Consensus       297 ~~~  299 (304)
T cd05101         297 LTL  299 (304)
T ss_pred             HHh
Confidence            654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=5.9e-35  Score=266.56  Aligned_cols=233  Identities=23%  Similarity=0.266  Sum_probs=165.7

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|++|.||+|+...++..||+|.+....  ....+.+.+|+.+++.++||||+++                
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            4888999999999999999999889999999986442  2234678899999999999999987                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......  
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--  155 (285)
T cd07861          81 LSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR---VLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPV--  155 (285)
T ss_pred             CCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEEcCCCcEEECcccceeecCCCc--
Confidence                                   347889999999999999   9999999999999999999999999997543221  


Q ss_pred             CccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC--Cc----hHHH
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP--NR----VMDI  264 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~--~~----~~~~  264 (356)
                        .......+++.|+|||++.+. .++.++||||||+++|+|+||++||....... ...........  ..    ....
T Consensus       156 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  232 (285)
T cd07861         156 --RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEID-QLFRIFRILGTPTEDVWPGVTSL  232 (285)
T ss_pred             --ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHhCCCChhhhhcchhh
Confidence              112234568889999988654 47889999999999999999999997432211 11111110000  00    0000


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+...  ..       +.+...............+.+++.+||..||++|||+.+|+.
T Consensus       233 ~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         233 PDYKN--TF-------PKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             HHHHh--hc-------cccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            00000  00       000000000001123446689999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.6e-35  Score=263.49  Aligned_cols=213  Identities=22%  Similarity=0.343  Sum_probs=164.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .+|++.+.||+|+||.||+|.+.. +..+|+|.+.... .....+.+|+.+++.++||||+++                 
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~-~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRG-KIDVAIKMIREGA-MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYM   81 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecC-CccEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecC
Confidence            358889999999999999998864 5789999986432 234578889999999999999975                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           +.++.|++.||+|||+.+   ++||||||+||+++.++.+||+|||+++......   .
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~---~  155 (256)
T cd05059          82 ANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQ---Y  155 (256)
T ss_pred             CCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHhhEEECCCCcEEECCcccceeccccc---c
Confidence                                 457889999999999999   9999999999999999999999999997653221   1


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      .......++..|+|||.+.+..++.++||||||+++|+|++ |..||......  ........            .....
T Consensus       156 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~------------~~~~~  221 (256)
T cd05059         156 TSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNS--EVVESVSA------------GYRLY  221 (256)
T ss_pred             cccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHH--HHHHHHHc------------CCcCC
Confidence            11122233567999999998899999999999999999999 89998642211  11111000            00000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      .                  +..++..+.+++.+||+.+|++|||+.+|++.|
T Consensus       222 ~------------------~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         222 R------------------PKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             C------------------CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            0                  012344688999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=3.4e-35  Score=267.72  Aligned_cols=209  Identities=21%  Similarity=0.192  Sum_probs=158.9

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ||+|+||.||++....+++.||+|.+....   ......+..|+.++++++||||+++                      
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999999999999999986432   1223455679999999999999976                      


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.|++.||+|||+.+   |+||||||+||+++.++.++|+|||++.......     ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~-----~~~  152 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMD---IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK-----TIT  152 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC---EEEccCChHhEEEcCCCCEEEeeceeeeecCCCc-----eee
Confidence                             346789999999999999   9999999999999999999999999987654321     112


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...|+..|+|||++.+..++.++|||||||++|||++|+.||....... .............        ....     
T Consensus       153 ~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~--------~~~~-----  218 (277)
T cd05607         153 QRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV-AKEELKRRTLEDE--------VKFE-----  218 (277)
T ss_pred             ccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh-hHHHHHHHhhccc--------cccc-----
Confidence            3457889999999998889999999999999999999999996432111 1111111111000        0000     


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                                    .......+.+++.+||+.||++||++.++++.+
T Consensus       219 --------------~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~  251 (277)
T cd05607         219 --------------HQNFTEESKDICRLFLAKKPEDRLGSREKNDDP  251 (277)
T ss_pred             --------------cccCCHHHHHHHHHHhccCHhhCCCCccchhhh
Confidence                          002233568999999999999999998876443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=6.1e-35  Score=264.85  Aligned_cols=217  Identities=20%  Similarity=0.351  Sum_probs=165.6

Q ss_pred             CCccccceecCceEEEEEEECC---CCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      |.+.+.||+|+||.||+|.+..   ++..||||++....  ....+.+.+|+.+++.++||||+++              
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            5678899999999999998643   57899999986542  3345678899999999999998654              


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                         ..++.|++.||+|||+.+   |+||||||+||+++.++.++|+||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKN---FIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeecccchhhEEEcCCCCEEECcc
Confidence                                               346788999999999998   999999999999999999999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCC
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      |+++.......  ........++..|++||.+.+..++.++||||||+++|+|++ |.+||.....  ..........  
T Consensus       158 g~~~~~~~~~~--~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~~--  231 (273)
T cd05074         158 GLSKKIYSGDY--YRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN--SEIYNYLIKG--  231 (273)
T ss_pred             cccccccCCcc--eecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH--HHHHHHHHcC--
Confidence            99986533211  111122334567999999998889999999999999999999 8899864321  1111111000  


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .        .+.                    .....+..+.+++.+||+.+|++||++.+|++.|+.+
T Consensus       232 ~--------~~~--------------------~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         232 N--------RLK--------------------QPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             C--------cCC--------------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            0        000                    0012334688999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=285.86  Aligned_cols=210  Identities=23%  Similarity=0.317  Sum_probs=168.9

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeecc----CccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ----CQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~----~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +...+||+|+|-+||+|.+..+|..||--.++..    .....++|..|+.+|+.|+||||+++                
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            3456899999999999999999999987665422    33445789999999999999999998                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..|++||+.||.|||++ .+||||||||.+||+|+ ..|.+||+|+|+|..+..   
T Consensus       123 EL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~---  198 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRK---  198 (632)
T ss_pred             ecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhc---
Confidence                                   35999999999999998 48999999999999997 568999999999987643   


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .....+.||+.|||||+.. ..|+..+||||||+.++||+|+..||..................|..+..+-|+   
T Consensus       199 ---s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dP---  271 (632)
T KOG0584|consen  199 ---SHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDP---  271 (632)
T ss_pred             ---cccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCH---
Confidence               2333489999999999987 789999999999999999999999998654333223332222223333333332   


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                                 ++.++|.+|+.. ..+|||+.|||..
T Consensus       272 ---------------------------evr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  272 ---------------------------EVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             ---------------------------HHHHHHHHHhcC-chhccCHHHHhhC
Confidence                                       357899999999 9999999999864

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5e-35  Score=267.39  Aligned_cols=233  Identities=18%  Similarity=0.281  Sum_probs=169.2

Q ss_pred             CCCccccceecCceEEEEEEE----CCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .|++++.||+|+||.||+|.+    ..++..||+|.+.... ......+.+|+.+++.++||||+++             
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            478899999999999999985    3467899999986443 3334678899999999999999876             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.+++.||.|||+.+   ++||||||+||+++.++.++|+|||++.....
T Consensus        85 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~g---i~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             EEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccchheEEEcCCCCEEECCCcccccccc
Confidence                                       457789999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~  266 (356)
                      .... ........++..|+|||++.+..++.++||||||+++|+|+++..|+.....   .+........ .......+.
T Consensus       162 ~~~~-~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd05079         162 DKEY-YTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMT---LFLKMIGPTHGQMTVTRLVR  237 (284)
T ss_pred             Cccc-eeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccc---hhhhhcccccccccHHHHHH
Confidence            2211 1112234567789999999888899999999999999999998776532111   0000000000 000011110


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ....+..               ......++..+.+++.+||+.+|++|||+.++++.|+.+
T Consensus       238 ~~~~~~~---------------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         238 VLEEGKR---------------LPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHcCcc---------------CCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            0000000               000113445789999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=2.3e-35  Score=274.83  Aligned_cols=201  Identities=26%  Similarity=0.257  Sum_probs=154.0

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHH-HHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECK-ALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|++....   ......+..|.. +++.++||||+++                   
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            36899999999999999999999999997432   222344555554 5678999999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....    ....
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~g---ivH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~----~~~~  153 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGIEH----SKTT  153 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHeEECCCCcEEEeccCCCcccccC----CCcc
Confidence                              347889999999999999   999999999999999999999999998743221    1222


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|+|++|..||....     ........        +.....-     
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~-----~~~~~~~i--------~~~~~~~-----  215 (323)
T cd05575         154 STFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD-----TAEMYDNI--------LNKPLRL-----  215 (323)
T ss_pred             ccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC-----HHHHHHHH--------HcCCCCC-----
Confidence            34568999999999999999999999999999999999999996421     11111111        1100000     


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP  318 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  318 (356)
                                     .......+.+++.+||+.||.+||++.
T Consensus       216 ---------------~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         216 ---------------KPNISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             ---------------CCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence                           001233568999999999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=4.8e-35  Score=267.14  Aligned_cols=207  Identities=24%  Similarity=0.250  Sum_probs=158.7

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ||+|+||+||++.+..+++.||+|.+.....   ...+.+..|+.+++.++||||+++                      
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            6999999999999999999999999864322   223567789999999999999976                      


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.||+.||.|||+.+   |+||||||+||+++.++.++|+|||++.......    ..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~----~~  153 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRR---IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQ----SK  153 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCccceecCCCC----cc
Confidence                               347789999999999999   9999999999999999999999999997554322    12


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|+.||....... .............        .  .   
T Consensus       154 ~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~--------~--~---  219 (280)
T cd05608         154 TKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRILNDS--------V--T---  219 (280)
T ss_pred             ccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch-hHHHHHHhhcccC--------C--C---
Confidence            234568999999999999999999999999999999999999996432111 1111111110000        0  0   


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                                     .....+..+.+++.+||+.||++||     +++++++
T Consensus       220 ---------------~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         220 ---------------YPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             ---------------CcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence                           0012344678999999999999999     5556654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=3e-35  Score=274.75  Aligned_cols=157  Identities=24%  Similarity=0.342  Sum_probs=134.4

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|+++...   ......+..|..++..+ +||||+++                   
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            36899999999999999999999999997532   23345678899999988 69999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++.....    ....
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~----~~~~  153 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRP----GDTT  153 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEECcCccccccccC----CCcc
Confidence                              457889999999999999   999999999999999999999999998742211    1122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      ....||+.|+|||++.+..++.++|+|||||++|+|++|+.||+.
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  198 (329)
T cd05588         154 STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  198 (329)
T ss_pred             ccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccc
Confidence            346789999999999999999999999999999999999999964

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.4e-35  Score=266.36  Aligned_cols=218  Identities=23%  Similarity=0.339  Sum_probs=167.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|.+.+.||+|+||.||+|.....     +..||+|.+.... ......+.+|+.+++.++||||+++          
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            45789999999999999999998643     4789999986443 2334578899999999999999976          


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEc
Q 039228          135 -------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIG  177 (356)
Q Consensus       135 -------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~  177 (356)
                                                           +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~di~p~nill~~~~~~kl~  161 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK---FVHRDLAARNCMVAEDLTVKIG  161 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccChheEEEcCCCCEEEC
Confidence                                                 226679999999999998   9999999999999999999999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHh
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      |||+++.......  ........++..|+|||.+.+..++.++|||||||++||+++ |..||......  .......  
T Consensus       162 dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~--~~~~~~~--  235 (277)
T cd05032         162 DFGMTRDIYETDY--YRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNE--EVLKFVI--  235 (277)
T ss_pred             CcccchhhccCcc--cccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHH--HHHHHHh--
Confidence            9999875533221  111223445778999999988889999999999999999998 99998632211  1111110  


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                               +.... ..                  +..++..+.+++.+||+.+|++|||+.+|++.|+
T Consensus       236 ---------~~~~~-~~------------------~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  276 (277)
T cd05032         236 ---------DGGHL-DL------------------PENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK  276 (277)
T ss_pred             ---------cCCCC-CC------------------CCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhc
Confidence                     00000 00                  0123446789999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=3.7e-35  Score=272.84  Aligned_cols=205  Identities=20%  Similarity=0.192  Sum_probs=159.1

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|++....   ......+..|..++..+ +||||+++                   
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999999999999999997542   23345677888898887 69999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||+++......    ...
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~----~~~  153 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERG---IIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGG----VTT  153 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEccCCCHHHeEECCCCcEEecccCCCeecCcCC----Ccc
Confidence                              347789999999999999   9999999999999999999999999986432111    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....|+..|+|||++.+..++.++|||||||++|+|++|+.||.....     .......        ......  .   
T Consensus       154 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~-----~~~~~~i--------~~~~~~--~---  215 (318)
T cd05570         154 STFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE-----DELFQSI--------LEDEVR--Y---  215 (318)
T ss_pred             cceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH-----HHHHHHH--------HcCCCC--C---
Confidence            335689999999999999999999999999999999999999964221     1111110        000000  0   


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh-----HHHHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV-----PNAVH  322 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~-----~~vl~  322 (356)
                                     +......+.+++.+||+.||.+||++     .++++
T Consensus       216 ---------------~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         216 ---------------PRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             ---------------CCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence                           00223357899999999999999999     77765

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=5.3e-35  Score=269.95  Aligned_cols=221  Identities=22%  Similarity=0.306  Sum_probs=166.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCe--EEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRA--VVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++.  .+|+|.+.... ......+.+|+.++.++ +||||+++            
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~l   85 (303)
T cd05088           6 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   85 (303)
T ss_pred             hhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceE
Confidence            3578999999999999999999876664  45777765432 23345788899999999 89999876            


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc
Q 039228          135 -----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF  173 (356)
Q Consensus       135 -----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~  173 (356)
                                                               +.++.|++.||+|||+.+   ++||||||+|||++.++.
T Consensus        86 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dlkp~Nili~~~~~  162 (303)
T cd05088          86 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYV  162 (303)
T ss_pred             EEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchheEEecCCCc
Confidence                                                     135678999999999999   999999999999999999


Q ss_pred             eEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHH
Q 039228          174 AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNF  252 (356)
Q Consensus       174 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~  252 (356)
                      ++|+|||++......     .......++..|+|||++.+..++.++|||||||++|||+| |..||.....     ...
T Consensus       163 ~kl~dfg~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~~  232 (303)
T cd05088         163 AKIADFGLSRGQEVY-----VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AEL  232 (303)
T ss_pred             EEeCccccCcccchh-----hhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh-----HHH
Confidence            999999998632211     11111223567999999988889999999999999999998 9999863221     111


Q ss_pred             HHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          253 ARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ...         +........                  .......+.+++.+||+.+|++||++.+++++|..+.+.-
T Consensus       233 ~~~---------~~~~~~~~~------------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~  284 (303)
T cd05088         233 YEK---------LPQGYRLEK------------------PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER  284 (303)
T ss_pred             HHH---------HhcCCcCCC------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence            110         000000000                  0022335789999999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=7.2e-35  Score=270.27  Aligned_cols=160  Identities=24%  Similarity=0.322  Sum_probs=131.1

Q ss_pred             cccceecCceEEEEEEECC--CCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           77 INLIGVGSFDAVYQGVFDL--NRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      ...||+|+||.||+|+...  ++..||+|.+....  ....+.+|+.+++.++||||+++                    
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            3579999999999999754  56889999986432  23467889999999999999875                    


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe----CCCCceEEccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL----DNDLFAHIGDFELAR  183 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll----~~~~~~kl~Dfg~a~  183 (356)
                                                 ..++.|++.||.|||+.+   |+||||||+||++    +.++.+||+|||+++
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~  160 (317)
T cd07867          84 HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFAR  160 (317)
T ss_pred             CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCC---EEcCCCCHHHEEEccCCCCCCcEEEeecccee
Confidence                                       246789999999999999   9999999999999    567899999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ........ ........+|..|+|||++.+ ..++.++|||||||++|||+||++||...
T Consensus       161 ~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         161 LFNSPLKP-LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             ccCCCccc-ccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence            65432211 122334678999999999876 45789999999999999999999999643

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=9.8e-35  Score=272.85  Aligned_cols=223  Identities=21%  Similarity=0.258  Sum_probs=167.8

Q ss_pred             cCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRFIS-------  136 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~-------  136 (356)
                      .++|++.+.||+|+||.||+|.+.     .+++.||||+++... ......+.+|+.++.++ +||||+++++       
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   85 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence            467999999999999999999852     456899999997543 22345688999999999 6899998721       


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          137 --------------------------------------------------------------------------------  136 (356)
Q Consensus       137 --------------------------------------------------------------------------------  136 (356)
                                                                                                      
T Consensus        86 ~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE  165 (343)
T ss_pred             ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhh
Confidence                                                                                            


Q ss_pred             ------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCC
Q 039228          137 ------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG  198 (356)
Q Consensus       137 ------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  198 (356)
                                        ++.||+.||.|||+.+   |+||||||+||+++.++.++|+|||++........  ......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~  240 (343)
T cd05103         166 AEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSENNVVKICDFGLARDIYKDPD--YVRKGD  240 (343)
T ss_pred             hhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCccCeEEEcCCCcEEEEecccccccccCcc--hhhcCC
Confidence                              3558999999999999   99999999999999999999999999976532211  111222


Q ss_pred             ccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       199 ~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ..++..|+|||.+.+..++.++||||||+++|+|++ |..||....... .+...            +........    
T Consensus       241 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-~~~~~------------~~~~~~~~~----  303 (343)
T cd05103         241 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRR------------LKEGTRMRA----  303 (343)
T ss_pred             CCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH-HHHHH------------HhccCCCCC----
Confidence            345677999999988889999999999999999997 999986432110 11110            000000000    


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                                    +......+.+++..||+.||++|||+.+|++.|+.+.+
T Consensus       304 --------------~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         304 --------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             --------------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                          00112357899999999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=1.4e-35  Score=281.92  Aligned_cols=167  Identities=23%  Similarity=0.271  Sum_probs=139.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++++.||+|+||.||+|++..+++.||+|++....   ......+.+|+.+|+.++||||+++              
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            36999999999999999999999999999999986432   2234567889999999999999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC-
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN-  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-  190 (356)
                                             ..++.||+.||+|||+.+   |+||||||+|||++.++.+||+|||++..+..... 
T Consensus        81 E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~  157 (376)
T cd05598          81 DYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  157 (376)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCCHHHEEECCCCCEEEEeCCCCccccccccc
Confidence                                   336789999999999999   99999999999999999999999999753210000 


Q ss_pred             --------------------------------------CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHH
Q 039228          191 --------------------------------------PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEM  232 (356)
Q Consensus       191 --------------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~el  232 (356)
                                                            ..........||+.|+|||++.+..++.++|||||||++|||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyel  237 (376)
T cd05598         158 KYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM  237 (376)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeeh
Confidence                                                  000111235789999999999999999999999999999999


Q ss_pred             HcCCCCCCc
Q 039228          233 VTRRKPIDF  241 (356)
Q Consensus       233 ltg~~Pf~~  241 (356)
                      ++|+.||..
T Consensus       238 l~G~~Pf~~  246 (376)
T cd05598         238 LVGQPPFLA  246 (376)
T ss_pred             hhCCCCCCC
Confidence            999999964

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=5.8e-35  Score=268.22  Aligned_cols=225  Identities=22%  Similarity=0.322  Sum_probs=167.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC----------------eEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHH
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR----------------AVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVR  133 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~----------------~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~  133 (356)
                      .++|++.+.||+|+||.||+|.+..++                ..||+|.+.... ....+.+.+|+.++++++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            457999999999999999999876533                568999987543 234567889999999999999987


Q ss_pred             H------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCC
Q 039228          134 F------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSN  165 (356)
Q Consensus       134 l------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~N  165 (356)
                      +                                                +.++.|++.||.|||+.+   |+|+||||+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~---i~H~dlkp~N  160 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLN---FVHRDLATRN  160 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC---ccccccchhc
Confidence            5                                                246789999999999999   9999999999


Q ss_pred             eEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc--CCCCCCccc
Q 039228          166 VLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT--RRKPIDFMF  243 (356)
Q Consensus       166 Ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt--g~~Pf~~~~  243 (356)
                      |+++.++.++|+|||+++.......  ........++..|+|||++.+..++.++|||||||++|||++  |..||....
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05051         161 CLVGKNYTIKIADFGMSRNLYSSDY--YRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT  238 (296)
T ss_pred             eeecCCCceEEccccceeecccCcc--eeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC
Confidence            9999999999999999875432211  112223445778999999988889999999999999999998  677876432


Q ss_pred             cCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          244 EGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..  .........+...     .....                  ...+..++..+.+++.+||+.||++|||+.+|++.
T Consensus       239 ~~--~~~~~~~~~~~~~-----~~~~~------------------~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~  293 (296)
T cd05051         239 DQ--QVIENAGHFFRDD-----GRQIY------------------LPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLF  293 (296)
T ss_pred             hH--HHHHHHHhccccc-----ccccc------------------CCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHH
Confidence            11  1111111000000     00000                  00011233568999999999999999999999998


Q ss_pred             HH
Q 039228          324 LQ  325 (356)
Q Consensus       324 L~  325 (356)
                      |+
T Consensus       294 L~  295 (296)
T cd05051         294 LQ  295 (296)
T ss_pred             hc
Confidence            85

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=6e-35  Score=279.10  Aligned_cols=224  Identities=24%  Similarity=0.280  Sum_probs=170.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccCc-cchHHHHHHHHHHhhcC-CCChHHHH-------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQCQ-GASKSFMAECKALKNIC-HRNLVRFI-------  135 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~l~-------  135 (356)
                      ..++|.+.+.||+|+||.||+|.+...     +..||||++..... ...+.+.+|+.+++++. ||||++++       
T Consensus        35 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~  114 (400)
T cd05105          35 PRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSG  114 (400)
T ss_pred             cccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCC
Confidence            356799999999999999999987432     35799999964432 33457899999999996 99999871       


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          136 --------------------------------------------------------------------------------  135 (356)
Q Consensus       136 --------------------------------------------------------------------------------  135 (356)
                                                                                                      
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (400)
T cd05105         115 PIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEI  194 (400)
T ss_pred             ceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhh
Confidence                                                                                            


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC
Q 039228          136 ----------------------------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLD  169 (356)
Q Consensus       136 ----------------------------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~  169 (356)
                                                                    .++.|++.||.|||+.+   |+||||||+|||++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivH~dikp~Nill~  271 (400)
T cd05105         195 KEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKN---CVHRDLAARNVLLA  271 (400)
T ss_pred             hhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChHhEEEe
Confidence                                                          15568999999999998   99999999999999


Q ss_pred             CCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCcc
Q 039228          170 NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLN  248 (356)
Q Consensus       170 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~  248 (356)
                      .++.+||+|||+++.......  ........++..|+|||.+.+..++.++|||||||++|||++ |..||....... .
T Consensus       272 ~~~~~kL~DfGla~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~-~  348 (400)
T cd05105         272 QGKIVKICDFGLARDIMHDSN--YVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDS-T  348 (400)
T ss_pred             CCCEEEEEeCCcceecccccc--ccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhH-H
Confidence            999999999999976533221  112233456778999999998899999999999999999997 999986432211 1


Q ss_pred             HHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          249 LHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      +......            ....                  .....++..+.+++.+||+.||++||++.+|.++|+++.
T Consensus       349 ~~~~~~~------------~~~~------------------~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         349 FYNKIKS------------GYRM------------------AKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             HHHHHhc------------CCCC------------------CCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence            1000000            0000                  001134456789999999999999999999999998765


Q ss_pred             h
Q 039228          329 N  329 (356)
Q Consensus       329 ~  329 (356)
                      +
T Consensus       399 ~  399 (400)
T cd05105         399 P  399 (400)
T ss_pred             C
Confidence            3

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.2e-34  Score=262.78  Aligned_cols=220  Identities=21%  Similarity=0.311  Sum_probs=170.0

Q ss_pred             CCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ++|.+.+.||.|+||.||+|.+...   ...||+|...... ....+.+.+|+.++++++||||+++             
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~   85 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVM   85 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEE
Confidence            4588899999999999999987543   3578999987554 3445678999999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              +.++.+++.||.|||+.+   ++|+||||+||+++.++.++|+|||+++.......
T Consensus        86 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  162 (270)
T cd05056          86 ELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKR---FVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESY  162 (270)
T ss_pred             EcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccChheEEEecCCCeEEccCceeeecccccc
Confidence                                    347789999999999999   99999999999999999999999999976543221


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                         .......++..|+|||.+....++.++||||||+++||+++ |..||.......  .........          .+
T Consensus       163 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~--~~~~~~~~~----------~~  227 (270)
T cd05056         163 ---YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNND--VIGRIENGE----------RL  227 (270)
T ss_pred             ---eecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHH--HHHHHHcCC----------cC
Confidence               11112334567999999988889999999999999999986 999996432211  101000000          00


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                       .                   ....++..+.+++.+||..+|++|||+.++++.|+.+..
T Consensus       228 -~-------------------~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         228 -P-------------------MPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             -C-------------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence             0                   001334467899999999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=5.1e-35  Score=271.73  Aligned_cols=204  Identities=21%  Similarity=0.198  Sum_probs=155.9

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhh-cCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKN-ICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~-l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|++..++..||+|+++...   ......+..|..++.. ++||||+++                   
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999999999999999997532   2234556778888775 489999986                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||+|||+.+   |+||||||+||+++.++.++|+|||+++......    ...
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~  153 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKG---IIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGD----NRA  153 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEeCccCCCeecccCC----Cce
Confidence                              347789999999999999   9999999999999999999999999986432111    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||..|+|||++.+..++.++|||||||++|||++|..||.....     .......         .... ....  
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~-----~~~~~~~---------~~~~-~~~~--  216 (316)
T cd05620         154 STFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE-----DELFESI---------RVDT-PHYP--  216 (316)
T ss_pred             eccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHHH---------HhCC-CCCC--
Confidence            346689999999999999999999999999999999999999964221     1111110         0000 0000  


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH-HHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP-NAV  321 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~-~vl  321 (356)
                                      ......+.+++.+||+.||++||++. +++
T Consensus       217 ----------------~~~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         217 ----------------RWITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             ----------------CCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence                            01223567899999999999999984 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.1e-35  Score=262.03  Aligned_cols=212  Identities=25%  Similarity=0.366  Sum_probs=168.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||.|+||.||+|...  ++.||+|.+..... ..+++.+|+.+++.++|+||+++                
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYR--GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEec--CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEe
Confidence            457899999999999999999976  68999999975543 46789999999999999999986                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||.++....... 
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~---i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~-  157 (256)
T cd05039          82 MAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN---FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD-  157 (256)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccchhcccceEEEeCCCCEEEcccccccccccccc-
Confidence                                   347789999999999999   99999999999999999999999999986532111 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                            ....+..|+|||++....++.++||||||+++|+|++ |..||......  .+......            ...
T Consensus       158 ------~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~------------~~~  217 (256)
T cd05039         158 ------SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPHVEK------------GYR  217 (256)
T ss_pred             ------cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHhc------------CCC
Confidence                  2234567999999988889999999999999999997 99998632111  11111100            000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ..                  .....+..+.+++.+||..+|++|||+.+|+++|+.+
T Consensus       218 ~~------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         218 ME------------------APEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             CC------------------CccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence            00                  0012344678999999999999999999999999764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-35  Score=279.89  Aligned_cols=167  Identities=20%  Similarity=0.221  Sum_probs=139.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|.+.+.||+|+||.||+|....+++.||||++....   ....+.+.+|+.+++.++||||+++              
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            47999999999999999999999999999999986432   2234567889999999999999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC-
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN-  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-  190 (356)
                                             ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++....... 
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~  157 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLG---FIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDS  157 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEECCCCCEEEeeccccccccccccc
Confidence                                   236889999999999999   99999999999999999999999999863211000 


Q ss_pred             -----------CC-------------------------------ccCCCCccccccccchhhhcCCCCCCccchHhHHHH
Q 039228          191 -----------PT-------------------------------QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGIL  228 (356)
Q Consensus       191 -----------~~-------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~  228 (356)
                                 ..                               ........||+.|+|||++.+..++.++|||||||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvi  237 (377)
T cd05629         158 AYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAI  237 (377)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchh
Confidence                       00                               000012468999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCc
Q 039228          229 LLEMVTRRKPIDF  241 (356)
Q Consensus       229 l~elltg~~Pf~~  241 (356)
                      +|||++|..||..
T Consensus       238 l~elltG~~Pf~~  250 (377)
T cd05629         238 MFECLIGWPPFCS  250 (377)
T ss_pred             hhhhhcCCCCCCC
Confidence            9999999999964

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=6.4e-35  Score=262.17  Aligned_cols=212  Identities=17%  Similarity=0.195  Sum_probs=167.1

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      +|++.+.||.|+||.||++.+..+++.||+|.++... ....+.+..|+.+++.++|+||+++                 
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            4888999999999999999999999999999986432 3345678889999999999999876                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||.+.......   
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~---  154 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKR---VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPG---  154 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEECCCCcEEEcccCcceeecccc---
Confidence                                  347889999999999999   9999999999999999999999999997654321   


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                       .......++..|+|||++.+..++.++|+||||+++|+|++|..||....     ........            ....
T Consensus       155 -~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~-----~~~~~~~~------------~~~~  216 (255)
T cd08219         155 -AYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS-----WKNLILKV------------CQGS  216 (255)
T ss_pred             -cccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCC-----HHHHHHHH------------hcCC
Confidence             11223567889999999998889999999999999999999999996321     11111110            0000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...               .+......+.+++.+||+.||++||++.+|+..
T Consensus       217 ~~~---------------~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         217 YKP---------------LPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             CCC---------------CCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            000               001223356799999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=2.2e-34  Score=262.79  Aligned_cols=234  Identities=20%  Similarity=0.224  Sum_probs=167.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++...||+|+||.||+|++..+++.||+|++....  ....+.+.+|+.+++.++|||++++               
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            46889999999999999999999889999999986432  2233567899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++........  
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--  155 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHN---CIHRDVKPENILITKQGQIKLCDFGFARILTGPGD--  155 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCChhhEEEcCCCcEEECccccceecCCCcc--
Confidence                                  458889999999999999   99999999999999999999999999986543221  


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCchHHHhhhh-
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNRVMDIVNLV-  268 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-  268 (356)
                        ......++..|+|||++.+ ..++.++||||||+++|+|++|..||......+ ..........  ........+.. 
T Consensus       156 --~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07847         156 --DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVD-QLYLIRKTLGDLIPRHQQIFSTNQ  232 (286)
T ss_pred             --cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChHHhhhccccc
Confidence              1223456788999999876 457889999999999999999999997533211 1111111000  00000010000 


Q ss_pred             -----hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 -----LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 -----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                           ......    ...     ............+.+++.+||+.+|++||++.+++.
T Consensus       233 ~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         233 FFKGLSIPEPE----TRE-----PLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             ccccccCCCcc----ccc-----CHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence                 000000    000     000001123456789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.1e-35  Score=267.89  Aligned_cols=224  Identities=21%  Similarity=0.306  Sum_probs=164.8

Q ss_pred             CCCCccccceecCceEEEEEEECCC--------------CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH--
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLN--------------RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF--  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~--------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l--  134 (356)
                      ++|++.+.||+|+||.||+|....+              ...||+|.++... ......+.+|++++++++|||++++  
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            5799999999999999999987543              2358999987542 2334568899999999999999876  


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeE
Q 039228          135 -----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVL  167 (356)
Q Consensus       135 -----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIl  167 (356)
                                                                     +.++.+++.||.|||+.+   ++|+||||+||+
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~---i~H~dlkp~Nil  161 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLN---FVHRDLATRNCL  161 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcC---eeccccChhhEE
Confidence                                                           236789999999999999   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc--CCCCCCccccC
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT--RRKPIDFMFEG  245 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt--g~~Pf~~~~~~  245 (356)
                      ++.++.+||+|||++........  ........++..|+|||++.+..++.++|||||||++|+|++  |..||......
T Consensus       162 l~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~  239 (295)
T cd05097         162 VGNHYTIKIADFGMSRNLYSGDY--YRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDE  239 (295)
T ss_pred             EcCCCcEEecccccccccccCcc--eeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChH
Confidence            99999999999999975432211  112223445678999999988889999999999999999988  66777642211


Q ss_pred             CccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          246 DLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                        .........+...     .......                  .....+..+.+++.+||+.||++|||+++|++.|+
T Consensus       240 --~~~~~~~~~~~~~-----~~~~~~~------------------~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         240 --QVIENTGEFFRNQ-----GRQIYLS------------------QTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             --HHHHHHHHhhhhc-----cccccCC------------------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence              1111111000000     0000000                  00123346899999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=5.2e-35  Score=265.16  Aligned_cols=215  Identities=21%  Similarity=0.284  Sum_probs=166.1

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      .+.+.|++.+.||+|+||.||+|.+..+++.||+|.+.... .....+..|+.++.++ +|+||+++             
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            35677999999999999999999999999999999987543 3346788999999998 69999975             


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a  182 (356)
                                                      ..++.|++.||+|||+.+   |+|+||+|+||+++.++.++|+|||++
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivh~dl~~~nili~~~~~~~l~Dfg~~  158 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVS  158 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHEEECCCCCEEEccCCCc
Confidence                                            337789999999999999   999999999999999999999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF  257 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~  257 (356)
                      .......    .......|+..|+|||++.     +..++.++|||||||++|||++|..||......    ....... 
T Consensus       159 ~~~~~~~----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~----~~~~~~~-  229 (272)
T cd06637         159 AQLDRTV----GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM----RALFLIP-  229 (272)
T ss_pred             eeccccc----ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHH----HHHHHHh-
Confidence            7543221    1223466889999999986     345788999999999999999999998632211    1100000 


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...     .....                     ...++..+.+++.+||..+|.+|||+.++++
T Consensus       230 ~~~-----~~~~~---------------------~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         230 RNP-----APRLK---------------------SKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             cCC-----CCCCC---------------------CCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            000     00000                     0023345789999999999999999999975

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=1.6e-34  Score=266.81  Aligned_cols=168  Identities=25%  Similarity=0.361  Sum_probs=139.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|....+++.||||.+....  ......+.+|+.++++++||||+++              
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            467999999999999999999999999999999986432  2223456789999999999999875              


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     ..++.|++.||.|||+++   ++|+||+|+||+++.++.+||+|||++.
T Consensus        91 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~  167 (310)
T cd07865          91 KGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNK---ILHRDMKAANILITKDGILKLADFGLAR  167 (310)
T ss_pred             CceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEECCCCcEEECcCCCcc
Confidence                                           347789999999999999   9999999999999999999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      .................++..|+|||.+.+. .++.++||||||+++|+|++|..||..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~  226 (310)
T cd07865         168 AFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQG  226 (310)
T ss_pred             cccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCC
Confidence            6543322111222345678889999988664 368899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=6.6e-35  Score=268.22  Aligned_cols=224  Identities=18%  Similarity=0.265  Sum_probs=164.7

Q ss_pred             CCCCccccceecCceEEEEEEECC----------------CCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDL----------------NRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~----------------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l  134 (356)
                      ++|++.+.||+|+||.||++.+..                +...||+|++.... ......+.+|+.+++.++|+||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            569999999999999999986432                34579999987543 2334678899999999999999865


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCe
Q 039228          135 ------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNV  166 (356)
Q Consensus       135 ------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NI  166 (356)
                                                                      +.++.+++.||+|||+.+   ++|+||||+||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dlkp~Ni  161 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLN---FVHRDLATRNC  161 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCC---eecccCChheE
Confidence                                                            235778999999999999   99999999999


Q ss_pred             EeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc--CCCCCCcccc
Q 039228          167 LLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT--RRKPIDFMFE  244 (356)
Q Consensus       167 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt--g~~Pf~~~~~  244 (356)
                      +++.++.++|+|||+++.+.....  ........++..|++||...++.++.++|+|||||++|||++  |..||.....
T Consensus       162 li~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~  239 (296)
T cd05095         162 LVGKNYTIKIADFGMSRNLYSGDY--YRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSD  239 (296)
T ss_pred             EEcCCCCEEeccCcccccccCCcc--eeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccCh
Confidence            999999999999999975532221  111222334678999999888889999999999999999998  7788864221


Q ss_pred             CCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          245 GDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      .     +....     .............               ......++..+.+++.+||+.||.+||++.+|++.|
T Consensus       240 ~-----~~~~~-----~~~~~~~~~~~~~---------------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l  294 (296)
T cd05095         240 E-----QVIEN-----TGEFFRDQGRQVY---------------LPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATL  294 (296)
T ss_pred             H-----HHHHH-----HHHHHhhcccccc---------------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            1     11100     0000000000000               000013445688999999999999999999999998


Q ss_pred             H
Q 039228          325 Q  325 (356)
Q Consensus       325 ~  325 (356)
                      +
T Consensus       295 ~  295 (296)
T cd05095         295 L  295 (296)
T ss_pred             h
Confidence            6

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=1.3e-34  Score=262.26  Aligned_cols=217  Identities=19%  Similarity=0.220  Sum_probs=166.3

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..++++.....||+|+||.||+|.+..++..||+|.+........+.+.+|+.+++.++|+||+++              
T Consensus         5 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   84 (268)
T cd06624           5 YEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFM   84 (268)
T ss_pred             cccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEE
Confidence            345666667789999999999999998899999999876665566789999999999999999987              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEccccccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~  187 (356)
                                                ..++.|++.||.|||+.+   |+||||||+||+++. ++.++|+|||++.....
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~  161 (268)
T cd06624          85 EQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAG  161 (268)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCeEEEecchhheeccc
Confidence                                      236679999999999998   999999999999976 67999999999875532


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCC--CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSE--VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ..    .......++..|+|||++.+..  ++.++|+||||+++|+|++|..||.........  .+.....        
T Consensus       162 ~~----~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~--~~~~~~~--------  227 (268)
T cd06624         162 IN----PCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAA--MFKVGMF--------  227 (268)
T ss_pred             CC----CccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhh--Hhhhhhh--------
Confidence            21    1122245788999999986643  788999999999999999999998643211100  0000000        


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                        .....                  .+......+.+++.+||+.+|.+|||+.+|+.
T Consensus       228 --~~~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         228 --KIHPE------------------IPESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             --ccCCC------------------CCcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence              00000                  00123345789999999999999999999986

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-34  Score=263.46  Aligned_cols=213  Identities=20%  Similarity=0.246  Sum_probs=168.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++.+.||.|++|.||+|.+..+++.||+|.+.... ......+.+|+.+++.++|+||+++                
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            46888999999999999999999999999999987543 3344678899999999999999987                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.|++.||.|||+.+   ++|+||+|+||++++++.++|+|||+++......    .
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~----~  153 (274)
T cd06609          81 CGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEG---KIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM----S  153 (274)
T ss_pred             eCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEcccccceeecccc----c
Confidence                                457889999999999999   9999999999999999999999999998665332    1


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ......++..|+|||++.+..++.++||||||+++|+|++|..||......  .....            +.........
T Consensus       154 ~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~--~~~~~------------~~~~~~~~~~  219 (274)
T cd06609         154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPM--RVLFL------------IPKNNPPSLE  219 (274)
T ss_pred             ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchH--HHHHH------------hhhcCCCCCc
Confidence            223356788899999999888999999999999999999999999643211  00000            0000000000


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .                 ...+..+.+++.+||..+|++|||++++++
T Consensus       220 ~-----------------~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         220 G-----------------NKFSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             c-----------------cccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            0                 013345788999999999999999999987

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=7.7e-35  Score=265.75  Aligned_cols=212  Identities=21%  Similarity=0.273  Sum_probs=164.3

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      |++.+.||.|+||.||+|.+..++..+++|.+........+.+.+|+.+++.++||||+++                   
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            6788899999999999999999999999999876555556778899999999999999987                   


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.+++.||.|||+.+   ++||||||+||+++.++.++|+|||++.......    ..
T Consensus        87 ~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~---i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~----~~  159 (282)
T cd06643          87 GAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENK---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI----QR  159 (282)
T ss_pred             CcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEccCCCEEEccccccccccccc----cc
Confidence                               347789999999999999   9999999999999999999999999987543211    12


Q ss_pred             CCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          196 SNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                      .....++..|+|||++.     +..++.++|||||||++|+|++|.+||....... ........ .+        +.+.
T Consensus       160 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~-~~~~~~~~-~~--------~~~~  229 (282)
T cd06643         160 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKS-EP--------PTLA  229 (282)
T ss_pred             cccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHH-HHHHHhhc-CC--------CCCC
Confidence            23356788999999974     3457789999999999999999999986422110 00000000 00        0000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                          .+......+.+++.+||+.||.+||++.++++
T Consensus       230 --------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         230 --------------------QPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             --------------------CccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                00123346789999999999999999998864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=1.3e-34  Score=272.93  Aligned_cols=245  Identities=19%  Similarity=0.140  Sum_probs=172.4

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+...  .......+.+|+.+++.++||||+++             
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            357799999999999999999999999999999998643  22334567889999999999999865             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||+|||+.+   |+||||||+||+++.++.++|+|||+++....
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  170 (353)
T cd07850          94 QDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  170 (353)
T ss_pred             CcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCccceeCCC
Confidence                                       236789999999999999   99999999999999999999999999976533


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCchHHHh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNRVMDIV  265 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~  265 (356)
                      ..     ......++..|+|||.+.+..++.++|||||||++|+|++|+.||...... ...........  +..+...+
T Consensus       171 ~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~  244 (353)
T cd07850         171 SF-----MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHI-DQWNKIIEQLGTPSDEFMSRL  244 (353)
T ss_pred             CC-----CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHHh
Confidence            21     122345788999999999999999999999999999999999999643211 11111111110  01111111


Q ss_pred             hhhhcccccccc----ccccchhhhh-----chhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          266 NLVLLNDNKVLA----GTNSNMLRKT-----KMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       266 ~~~l~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +..+........    ..........     ...........+.+++.+||+.||++|||+.+++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         245 QPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             hhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            111100000000    0000000000     000011234567899999999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=4.8e-35  Score=272.93  Aligned_cols=205  Identities=25%  Similarity=0.256  Sum_probs=155.2

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHH-HHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECK-ALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|++..+++.||+|++....   ......+..|.. +++.++||||+++                   
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36899999999999999999999999987432   122234444544 5678999999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++......    ...
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~g---iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~----~~~  153 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN----GTT  153 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHeEECCCCCEEEccCCCCcccccCC----CCc
Confidence                              337789999999999999   9999999999999999999999999987432211    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|+|++|..||.....     ......        +.......     
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~~~--------i~~~~~~~-----  215 (325)
T cd05602         154 STFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMYDN--------ILNKPLQL-----  215 (325)
T ss_pred             ccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH-----HHHHHH--------HHhCCcCC-----
Confidence            346789999999999999999999999999999999999999964211     111111        11100000     


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                     .......+.+++.+||+.||.+||++.+.+.
T Consensus       216 ---------------~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  246 (325)
T cd05602         216 ---------------KPNITNSARHLLEGLLQKDRTKRLGAKDDFM  246 (325)
T ss_pred             ---------------CCCCCHHHHHHHHHHcccCHHHCCCCCCCHH
Confidence                           0022335688999999999999999875443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=1e-34  Score=262.90  Aligned_cols=220  Identities=20%  Similarity=0.373  Sum_probs=167.9

Q ss_pred             CCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+   +..+|+|.+.... ....+.+..|+.++++++||||+++             
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            5688999999999999999988643   3479999986443 2234678899999999999999986             


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.+++.||.|||+.+   ++||||||+||+++.++.++|+|||++.......
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd05066          84 TEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  160 (267)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeehhhchhcEEECCCCeEEeCCCCccccccccc
Confidence                                     457889999999999999   9999999999999999999999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .. ........++..|++||++.+..++.++|+||||+++|++++ |..||......  ..........           
T Consensus       161 ~~-~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~--~~~~~~~~~~-----------  226 (267)
T cd05066         161 EA-AYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQ--DVIKAIEEGY-----------  226 (267)
T ss_pred             ce-eeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHH--HHHHHHhCCC-----------
Confidence            11 111122233567999999998889999999999999999887 99998643211  1111111000           


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                       ...                  ....++..+.+++.+||+.+|.+||++.++++.|+++
T Consensus       227 -~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         227 -RLP------------------APMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             -cCC------------------CCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence             000                  0012334678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=7.8e-35  Score=266.72  Aligned_cols=223  Identities=20%  Similarity=0.311  Sum_probs=167.9

Q ss_pred             hhcCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------  134 (356)
                      ...++|++.+.||+|+||.||+|..+.     .+..||+|.+..... .....+.+|+.+++.++||||+++        
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   82 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ   82 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            346789999999999999999997642     346899999864432 233467889999999999999986        


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceE
Q 039228          135 ---------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH  175 (356)
Q Consensus       135 ---------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~k  175 (356)
                                                             ..++.|++.||.|||+++   |+||||||+||++++++.++
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dikp~nili~~~~~~~  159 (288)
T cd05061          83 PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKK---FVHRDLAARNCMVAHDFTVK  159 (288)
T ss_pred             CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCCChheEEEcCCCcEE
Confidence                                                   126778999999999999   99999999999999999999


Q ss_pred             EcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHH
Q 039228          176 IGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       176 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~  254 (356)
                      |+|||+++.......  ........++..|+|||.+.+..++.++|+|||||++|||++ |..||.....     .....
T Consensus       160 L~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~-----~~~~~  232 (288)
T cd05061         160 IGDFGMTRDIYETDY--YRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSN-----EQVLK  232 (288)
T ss_pred             ECcCCcccccccccc--ccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHH
Confidence            999999875432211  111122344678999999998889999999999999999998 7889864221     11111


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      .        +.+......                   ...++..+.+++.+||+.||++|||+.++++.|++..
T Consensus       233 ~--------~~~~~~~~~-------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         233 F--------VMDGGYLDQ-------------------PDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             H--------HHcCCCCCC-------------------CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence            0        011000000                   0123346889999999999999999999999987753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.8e-34  Score=262.68  Aligned_cols=212  Identities=21%  Similarity=0.249  Sum_probs=166.8

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .|+..+.||.|+||.||+|.+..++..||+|.+.... ....+.+.+|+.++++++||||+++                 
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            3677788999999999999998889999999987443 3344678899999999999999998                 


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    ..
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~----~~  157 (277)
T cd06642          85 GGGSALDLLKPGPLEETYIATILREILKGLDYLHSER---KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ----IK  157 (277)
T ss_pred             CCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCC---eeccCCChheEEEeCCCCEEEccccccccccCcc----hh
Confidence                               347789999999999998   9999999999999999999999999987654221    11


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .....++..|+|||++.+..++.++|+||||+++|||++|..||.......  ...            .+........  
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~~~------------~~~~~~~~~~--  221 (277)
T cd06642         158 RNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR--VLF------------LIPKNSPPTL--  221 (277)
T ss_pred             hhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh--HHh------------hhhcCCCCCC--
Confidence            223457888999999998889999999999999999999999986432111  000            0000000000  


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                      ...++..+.+++.+||+.+|++||++.+|++.
T Consensus       222 ----------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         222 ----------------EGQYSKPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             ----------------CcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence                            01234467899999999999999999999984

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=8.2e-35  Score=270.32  Aligned_cols=204  Identities=25%  Similarity=0.270  Sum_probs=155.9

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhh-cCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKN-ICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~-l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|+++...   ......+..|..++.. ++||||+++                   
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            36899999999999999999999999997542   2234556678888875 589999986                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++......    ...
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~---ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~  153 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKG---IVYRDLKLDNILLDTDGHIKIADFGMCKENMLGD----AKT  153 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeCCCCHHHEEECCCCCEEEccCCcceECCCCC----Cce
Confidence                              347889999999999999   9999999999999999999999999987432111    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||..|+|||++.+..++.++|||||||++|||++|..||.....  ..........         .+...      
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--~~~~~~i~~~---------~~~~~------  216 (316)
T cd05619         154 CTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE--EELFQSIRMD---------NPCYP------  216 (316)
T ss_pred             eeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC---------CCCCC------
Confidence            345689999999999998999999999999999999999999964211  0111111000         00000      


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH-HHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP-NAV  321 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~-~vl  321 (356)
                                      ......+.+++.+||+.||++||++. ++.
T Consensus       217 ----------------~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         217 ----------------RWLTREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             ----------------ccCCHHHHHHHHHHhccCHhhcCCChHHHH
Confidence                            01223467899999999999999997 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=8.4e-35  Score=267.74  Aligned_cols=238  Identities=20%  Similarity=0.183  Sum_probs=179.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ..+|++.+.||.|+||.||+|.+..+++.||+|.+........+.+.+|+.+++.++||||+++                
T Consensus        18 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          18 KKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             cceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEe
Confidence            3469999999999999999999998999999999976655556788899999999999999987                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    .
T Consensus        98 ~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~---i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~----~  170 (296)
T cd06655          98 LAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQ---VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQ----S  170 (296)
T ss_pred             cCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccchhccccc----c
Confidence                                447788999999999999   9999999999999999999999999987543321    1


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ......++..|+|||.+.+..++.++|+|||||++|+|++|+.||....... .... ......        +.+.    
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~-~~~~-~~~~~~--------~~~~----  236 (296)
T cd06655         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR-ALYL-IATNGT--------PELQ----  236 (296)
T ss_pred             cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHH-HHhcCC--------cccC----
Confidence            1223457889999999988889999999999999999999999996432110 0000 000000        0000    


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccccCCcCCcccccc
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRAPKLKA  350 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~~~~~~~~~~~~~  350 (356)
                                      ........+.+++.+||..||.+||++.+|+..     +-+.....+..++-+-.|+.++
T Consensus       237 ----------------~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~-----~~~~~~~~~~~~~~~~~~~~~~  291 (296)
T cd06655         237 ----------------NPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQH-----PFLKLAKPLSSLTPLILAAKEA  291 (296)
T ss_pred             ----------------CcccCCHHHHHHHHHHhhcChhhCCCHHHHhhC-----hHhhhccccccCCccccchhhh
Confidence                            001233457789999999999999999999842     2222223345555555555443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-35  Score=277.47  Aligned_cols=228  Identities=23%  Similarity=0.364  Sum_probs=187.0

Q ss_pred             HHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           65 ESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      ..|.....+....++||-|.||.||.|+|+.-.-.||||.++.. ....++|+.|+.+|+.++|||+|++          
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPF  338 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPF  338 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCe
Confidence            44555555677888999999999999999988889999998743 5667899999999999999999998          


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                   +.++.||..|+.||..++   +|||||...|+|+.++..+|++|||+++++
T Consensus       339 YIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkkn---FIHRDLAARNCLVgEnhiVKvADFGLsRlM  415 (1157)
T KOG4278|consen  339 YIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHIVKVADFGLSRLM  415 (1157)
T ss_pred             EEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhccccccceEEeeccchhhhh
Confidence                                         346789999999999998   999999999999999999999999999987


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ....   .....+..-.+-|.|||-+..+.++.++|||+|||+|||+.| |-.||.+.     ++.+         +..+
T Consensus       416 tgDT---YTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi-----dlSq---------VY~L  478 (1157)
T KOG4278|consen  416 TGDT---YTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI-----DLSQ---------VYGL  478 (1157)
T ss_pred             cCCc---eecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc-----cHHH---------HHHH
Confidence            6543   222223333567999999999999999999999999999998 88888642     2222         2233


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      +.....                  +..++.|+..+.+||+.||+++|.+||++.|+-+.++.+..+.
T Consensus       479 LEkgyR------------------M~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~s  527 (1157)
T KOG4278|consen  479 LEKGYR------------------MDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSSS  527 (1157)
T ss_pred             Hhcccc------------------ccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccc
Confidence            333222                  2334479999999999999999999999999999999886544

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=1.2e-34  Score=260.04  Aligned_cols=213  Identities=20%  Similarity=0.282  Sum_probs=168.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||.|+||.||+|.+..++..|++|.+.....  .+.+.+|+.+++.++||||+++                
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~   79 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY   79 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence            4679999999999999999999998889999999875432  6789999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........  
T Consensus        80 ~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--  154 (256)
T cd06612          80 CGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNK---KIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--  154 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEECCCCcEEEcccccchhcccCcc--
Confidence                                  347889999999999999   99999999999999999999999999976543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                        ......++..|+|||++.+..++.++||||||+++|+|++|+.||........    . ..         +.......
T Consensus       155 --~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~----~-~~---------~~~~~~~~  218 (256)
T cd06612         155 --KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRA----I-FM---------IPNKPPPT  218 (256)
T ss_pred             --ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhh----h-hh---------hccCCCCC
Confidence              12234568899999999988999999999999999999999999974322110    0 00         00000000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                      ..........+.+++.+||+.||++|||+.+|++
T Consensus       219 ----------------~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         219 ----------------LSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             ----------------CCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence                            0001123346789999999999999999999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=1.6e-34  Score=263.51  Aligned_cols=213  Identities=20%  Similarity=0.287  Sum_probs=160.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHH-HhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKA-LKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~-l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++.... .....+..|+.+ ++.++||||+++               
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            478999999999999999999999999999999875432 233456666664 667789999975               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 -------------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                               +.++.|++.||.|||++ +   ++||||||+||+++.++.+||+|||++......
T Consensus        81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~---i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  157 (283)
T cd06617          81 VMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLS---VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS  157 (283)
T ss_pred             hhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecccccccccc
Confidence                                     35788999999999987 7   999999999999999999999999998755321


Q ss_pred             CCCCccCCCCccccccccchhhhcC----CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG----SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      .     ......++..|+|||.+.+    ..++.++|+||||+++|+|++|+.||......   ....         ...
T Consensus       158 ~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~---------~~~  220 (283)
T cd06617         158 V-----AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTP---FQQL---------KQV  220 (283)
T ss_pred             c-----ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccC---HHHH---------HHH
Confidence            1     1223457888999998865    45688999999999999999999998632211   1111         011


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +..... ...                 ....+..+.+++.+||..+|++||++.+|++
T Consensus       221 ~~~~~~-~~~-----------------~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         221 VEEPSP-QLP-----------------AEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             HhcCCC-CCC-----------------ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            110000 000                 0023346789999999999999999999987

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=267.79  Aligned_cols=210  Identities=18%  Similarity=0.220  Sum_probs=170.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      -+|++.+.||+|.||.|-+|.....|+.||||.+++..-   .+.-.+.+|+++|+.|+||||+.+              
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            368999999999999999999988899999999975533   334467899999999999999988              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..+++||..|+.|+|.++   ++|||||.+|||+|.++++||+|||++..+..    
T Consensus       133 EYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknr---VvHRDLKLENILLD~N~NiKIADFGLSNly~~----  205 (668)
T KOG0611|consen  133 EYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNR---VVHRDLKLENILLDQNNNIKIADFGLSNLYAD----  205 (668)
T ss_pred             EecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhcc---ceecccchhheeecCCCCeeeeccchhhhhcc----
Confidence                                   348899999999999999   99999999999999999999999999986643    


Q ss_pred             CccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                       ......++|++.|.+||++.+.+| ++.+|.|||||+||.|+.|..||++.     +...++++.-.+           
T Consensus       206 -~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~-----Dhk~lvrQIs~G-----------  268 (668)
T KOG0611|consen  206 -KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR-----DHKRLVRQISRG-----------  268 (668)
T ss_pred             -ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc-----hHHHHHHHhhcc-----------
Confidence             234456899999999999999887 47899999999999999999999853     333333332211           


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       .+..                 ++-+-...-||.+||..||++|.|+.+|...
T Consensus       269 -aYrE-----------------P~~PSdA~gLIRwmLmVNP~RRATieDiAsH  303 (668)
T KOG0611|consen  269 -AYRE-----------------PETPSDASGLIRWMLMVNPERRATIEDIASH  303 (668)
T ss_pred             -cccC-----------------CCCCchHHHHHHHHHhcCcccchhHHHHhhh
Confidence             1110                 0111123468999999999999999998754

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=3.8e-35  Score=273.55  Aligned_cols=207  Identities=26%  Similarity=0.257  Sum_probs=156.5

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHH-HHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECK-ALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..+++.||+|++....   ......+..|.. +++.++||||+++                   
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            36899999999999999999999999987432   223345556655 5678999999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....    ....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~g---ivH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~----~~~~  153 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSIN---IVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQ----SDTT  153 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEEeecCCcccCCCC----CCCc
Confidence                              347889999999999999   999999999999999999999999998743221    1122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||..|+|||++.+..++.++|||||||++|+|++|..||....     ........        ....+...    
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~-----~~~~~~~~--------~~~~~~~~----  216 (325)
T cd05604         154 TTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRD-----VAEMYDNI--------LHKPLVLR----  216 (325)
T ss_pred             ccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCC-----HHHHHHHH--------HcCCccCC----
Confidence            34668999999999999999999999999999999999999996321     11111111        11000000    


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                                      +.....+.+++.+|++.+|.+||++.+.++.+
T Consensus       217 ----------------~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i  248 (325)
T cd05604         217 ----------------PGASLTAWSILEELLEKDRQRRLGAKEDFLEI  248 (325)
T ss_pred             ----------------CCCCHHHHHHHHHHhccCHHhcCCCCCCHHHH
Confidence                            01223567899999999999999986444433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.9e-34  Score=270.73  Aligned_cols=244  Identities=20%  Similarity=0.197  Sum_probs=170.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|.+...||+|+||.||+|++..+++.||+|.+....  ......+.+|+.+++.++||||+++              
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            478999999999999999999998889999999986432  2234567899999999999999876              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||+++.... 
T Consensus        94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~-  169 (342)
T cd07879          94 DFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAG---IIHRDLKPGNLAVNEDCELKILDFGLARHADA-  169 (342)
T ss_pred             eEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEeeCCCCcCCCC-
Confidence                                      226778999999999999   99999999999999999999999999875422 


Q ss_pred             CCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC---chHHH
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN---RVMDI  264 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~  264 (356)
                            ......++..|+|||.+.+ ..++.++|||||||++|||++|+.||...... ..+..... ....   ...+.
T Consensus       170 ------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~-~~~~~~~~-~~~~~~~~~~~~  241 (342)
T cd07879         170 ------EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILK-VTGVPGPEFVQK  241 (342)
T ss_pred             ------CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHH-hcCCCCHHHHHH
Confidence                  1223566888999999876 46889999999999999999999999742211 01111111 1110   11111


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH--HHHhhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD--LQSVNN  329 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~--L~~i~~  329 (356)
                      +.........   ...+.................+.+++.+||+.||++||++.+++..  ++.+.+
T Consensus       242 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         242 LEDKAAKSYI---KSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             hcccchHHHH---hhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence            1000000000   0000000000000011233457899999999999999999999854  555543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=8.7e-35  Score=275.95  Aligned_cols=171  Identities=23%  Similarity=0.275  Sum_probs=143.9

Q ss_pred             HHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------
Q 039228           65 ESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------  134 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------  134 (356)
                      .++....++|++.+.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.+++.++||||+++       
T Consensus        36 ~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~  115 (371)
T cd05622          36 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  115 (371)
T ss_pred             hhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcC
Confidence            344556689999999999999999999999999999999986421   2233457789999999999999987       


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                   ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++...
T Consensus       116 ~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDLkp~NIll~~~~~ikL~DfG~a~~~  192 (371)
T cd05622         116 RYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (371)
T ss_pred             CEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEECCCCCEEEEeCCceeEc
Confidence                                         336789999999999999   999999999999999999999999999865


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcCCC----CCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSE----VSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      ....   ........||+.|+|||++.+..    ++.++|||||||++|||++|..||..
T Consensus       193 ~~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~  249 (371)
T cd05622         193 NKEG---MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYA  249 (371)
T ss_pred             CcCC---cccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCC
Confidence            4221   11223467899999999987543    78899999999999999999999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.8e-34  Score=262.93  Aligned_cols=222  Identities=23%  Similarity=0.371  Sum_probs=170.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCe----EEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRA----VVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~----~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+|++.+.||+|+||.||+|.+..++.    .||+|.+..... .....+.+|+.++++++||||+++            
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v   86 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLI   86 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEE
Confidence            568899999999999999999876543    689998865533 334678899999999999999875            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.|++.||+|||+.+   ++|+||||+||+++.++.++|+|||+++......
T Consensus        87 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          87 TQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE  163 (279)
T ss_pred             EecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecccCcceEEEcCCCeEEECCCcccccccCcc
Confidence                                     457889999999999998   9999999999999999999999999998665322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      ...  ......++..|+|||.+....++.++|+||||+++||+++ |..||......  .+........           
T Consensus       164 ~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~~-----------  228 (279)
T cd05057         164 KEY--HAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAV--EIPDLLEKGE-----------  228 (279)
T ss_pred             cce--ecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhCCC-----------
Confidence            211  1112223567999999988889999999999999999999 99998643211  1111111000           


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ....                   +..+...+.+++.+||..+|+.||++.++++.|.++...
T Consensus       229 ~~~~-------------------~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         229 RLPQ-------------------PPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             CCCC-------------------CCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence            0000                   002233567899999999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2e-34  Score=260.58  Aligned_cols=215  Identities=21%  Similarity=0.278  Sum_probs=165.8

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc---------chHHHHHHHHHHhhcCCCChHHH---------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---------ASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---------~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      +|.+...||.|+||.||+|.+..+++.||+|.+......         ..+.+.+|+.++++++||||+++         
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            477889999999999999999888899999988643221         12467889999999999999987         


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.+++.||.|||+.+   ++||||+|+||+++.++.++|+|||.++...
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~---ivH~di~p~nil~~~~~~~~l~dfg~~~~~~  157 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRG---IIHRDIKGANILVDNKGGIKISDFGISKKLE  157 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcC---cccccCCHHHEEEcCCCCEEecccCCCcccc
Confidence                                        357889999999999998   9999999999999999999999999998664


Q ss_pred             cCCCCC--ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          187 EVSNPT--QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       187 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ......  ........++..|+|||.+.+..++.++|+||||+++|+|++|+.||.....    .....         .+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~----~~~~~---------~~  224 (267)
T cd06628         158 ANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQ----LQAIF---------KI  224 (267)
T ss_pred             cccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccH----HHHHH---------HH
Confidence            321110  1112234578899999999988899999999999999999999999974311    11100         00


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ... .....                  +......+.+++.+||+.||.+||++.+|++
T Consensus       225 ~~~-~~~~~------------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         225 GEN-ASPEI------------------PSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             hcc-CCCcC------------------CcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            000 00000                  0123346789999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.3e-34  Score=262.86  Aligned_cols=234  Identities=21%  Similarity=0.255  Sum_probs=167.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+.....  ...+.+.+|+.+++.++||||+++               
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            468899999999999999999998899999999864322  234568899999999999999988               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||+|||+.+   ++|+||+|+||++++++.++|+|||++.......   
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~---  154 (286)
T cd07846          81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG---  154 (286)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEECCCCcEEEEeeeeeeeccCCc---
Confidence                                  347789999999999999   9999999999999999999999999987653322   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH--hCCCchHHHhh---
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM--AFPNRVMDIVN---  266 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~--~~~~~~~~~~~---  266 (356)
                       .......++..|+|||++.+ ..++.++||||||+++|||++|++||...... .........  .+........+   
T Consensus       155 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07846         155 -EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDI-DQLYHIIKCLGNLIPRHQEIFQKNP  232 (286)
T ss_pred             -cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchH-HHHHHHHHHhCCCchhhHHHhccch
Confidence             11223457889999999875 34678999999999999999999998642210 111111100  01111111111   


Q ss_pred             ---hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          267 ---LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       267 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                         ........     .    ...........+..+.+++.+||+.+|++||++.++++
T Consensus       233 ~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         233 LFAGMRLPEVK-----E----IEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             Hhhcccccccc-----C----cchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence               00000000     0    00000001134557889999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=1.3e-34  Score=265.01  Aligned_cols=212  Identities=20%  Similarity=0.224  Sum_probs=163.4

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      |++.+.||+|+||.||+|.+..+++.||+|.+.....   .....+..|+.++++++|+|++++                
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            7778899999999999999999999999999864322   223457789999999999999876                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++.......  
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~--  156 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ--  156 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHEEECCCCCEEEeeccceeecCCCc--
Confidence                                   347789999999999998   9999999999999999999999999987543221  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......|+..|+|||++.+..++.++||||||+++|+|++|+.||....... ..... ..... .    ...... 
T Consensus       157 ---~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~-~~~~~-~~~~~-~----~~~~~~-  225 (285)
T cd05630         157 ---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEV-ERLVK-E----VQEEYS-  225 (285)
T ss_pred             ---cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccc-hHHHH-Hhhhh-h----hhhhcC-
Confidence               1123468999999999999899999999999999999999999997432111 00000 00000 0    000000 


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                                           ......+.+|+..||+.||++|||     +.++++
T Consensus       226 ---------------------~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         226 ---------------------EKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             ---------------------ccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence                                 022335679999999999999999     778776

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.1e-34  Score=260.63  Aligned_cols=166  Identities=22%  Similarity=0.303  Sum_probs=140.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-----ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+|+..+.||+|+||.||+|.+..++..||+|.+....     ......+.+|+.+++.++||||+++            
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            47999999999999999999999899999999986432     1233568889999999999999876            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++.....
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~  158 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQT  158 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEccCCCcccccc
Confidence                                       347889999999999998   99999999999999999999999999875532


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      .... ........++..|+|||++.+..++.++|+|||||++|+|++|+.||..
T Consensus       159 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~  211 (266)
T cd06651         159 ICMS-GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAE  211 (266)
T ss_pred             cccc-CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccc
Confidence            2111 1112234578899999999988899999999999999999999999964

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.1e-34  Score=268.51  Aligned_cols=227  Identities=19%  Similarity=0.269  Sum_probs=169.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++.+.||+|+||.||++.+..++..+|+|.+..... .....+.+|++++++++||||+++                
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            469999999999999999999999999999999875422 234568899999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                           ..++.+++.||.|||+ .+   ++|+||||+||+++.++.++|+|||++......    
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~----  153 (308)
T cd06615          81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----  153 (308)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCC---EEECCCChHHEEEecCCcEEEccCCCccccccc----
Confidence                                 3578899999999997 46   999999999999999999999999998654221    


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC-------------
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN-------------  259 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-------------  259 (356)
                        ......++..|+|||.+.+..++.++|+||||+++|+|++|+.||.....  .............             
T Consensus       154 --~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (308)
T cd06615         154 --MANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDA--KELEAMFGRPVSEGEAKESHRPVSGH  229 (308)
T ss_pred             --ccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcch--hhHHHhhcCccccccccCCcccccCC
Confidence              12335678899999999888899999999999999999999999864321  1111111110000             


Q ss_pred             --------chHHHhhhhhccccccccccccchhhhhchhhH-HHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          260 --------RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSR-LECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       260 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                              ...+..+.......               +..+ ......+.+++.+||..+|++|||+.+|+..-
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         230 PPDSPRPMAIFELLDYIVNEPP---------------PKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             CCCccchhhHHHHHHHHhcCCC---------------ccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence                    00111111110000               0000 01344678999999999999999999998763

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.5e-34  Score=262.39  Aligned_cols=237  Identities=25%  Similarity=0.282  Sum_probs=165.8

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||.|++|.||+|++..+++.||||.+....  ......+.+|++++++++||||+++                
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            5888999999999999999999889999999986442  2233578899999999999999988                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+++.||+|||+.+   ++|+||+|+||+++.++.++|+|||++.......   
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~---i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~---  154 (284)
T cd07860          81 LHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV---  154 (284)
T ss_pred             cccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEeeccchhhcccCc---
Confidence                                  346778999999999999   9999999999999999999999999987553221   


Q ss_pred             ccCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC-chHHHhhhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN-RVMDIVNLVL  269 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l  269 (356)
                       .......++..|+|||++.+.. ++.++||||||+++|+|+||+.||....... ...+...... +. .....+... 
T Consensus       155 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  231 (284)
T cd07860         155 -RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLGTPDEVVWPGVTSL-  231 (284)
T ss_pred             -cccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHhCCCChhhhhhhhHH-
Confidence             1122234578899999887644 5888999999999999999999996432211 1112111111 10 000000000 


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      . .+   ......................+.+++.+||+.||.+|||+.+++.
T Consensus       232 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         232 P-DY---KPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             H-HH---HhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence            0 00   0000000000000001122345679999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.6e-34  Score=264.90  Aligned_cols=166  Identities=28%  Similarity=0.430  Sum_probs=139.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++++|.+.+.||+|+||.||+|....++..||+|.+..... .....+.+|+.+++.++|+||+++              
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            46789999999999999999999998899999999865432 223467789999999999999876              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||+++......  
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~--  157 (291)
T cd07870          83 EYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQH---ILHRDLKPQNLLISYLGELKLADFGLARAKSIPS--  157 (291)
T ss_pred             ecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChHHEEEcCCCcEEEeccccccccCCCC--
Confidence                                   347789999999999999   9999999999999999999999999987543211  


Q ss_pred             CccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                        .......++..|+|||++.+. .++.++||||||+++|+|++|..||...
T Consensus       158 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~  207 (291)
T cd07870         158 --QTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGV  207 (291)
T ss_pred             --CCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCc
Confidence              112234568899999998753 5788999999999999999999999743

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1.6e-34  Score=270.11  Aligned_cols=242  Identities=21%  Similarity=0.215  Sum_probs=167.0

Q ss_pred             CCCccccceecCceEEEEEEECCC--CeEEEEEEeecc--CccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLN--RAVVAIKVLSIQ--CQGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~--~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      +|++.+.||+|+||.||+|.+..+  +..||+|.+...  .....+.+.+|+.+++++ +||||+++             
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            478899999999999999999877  889999998643  222346788899999999 59999986             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||+++....
T Consensus        81 ~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~  157 (332)
T cd07857          81 LYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSAN---VLHRDLKPGNLLVNADCELKICDFGLARGFSE  157 (332)
T ss_pred             EEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHeEEcCCCCEEeCcCCCceeccc
Confidence                                       347789999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC--chHH
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN--RVMD  263 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~--~~~~  263 (356)
                      .............|+..|+|||++.+ ..++.++||||||+++|+|++|.+||...... ..+.......- +.  ....
T Consensus       158 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~  236 (332)
T cd07857         158 NPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYV-DQLNQILQVLGTPDEETLSR  236 (332)
T ss_pred             ccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHH-HHHHHHHHHhCCCCHHHHHh
Confidence            32222222344678999999998765 46889999999999999999999998643211 01111111100 00  0001


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +.++....................    .......+.+++.+||+.||.+|||+.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         237 IGSPKAQNYIRSLPNIPKKPFESI----FPNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             hhhhhHHHHHHhccccCCcchHhh----CCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            100000000000000000000000    0112346789999999999999999999874

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.6e-34  Score=264.35  Aligned_cols=212  Identities=21%  Similarity=0.218  Sum_probs=162.2

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      |+..+.||.|+||+||+|.+..+++.||+|.+....   ......+.+|+.+++.++|+||+++                
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            677889999999999999999999999999986432   1223457789999999999999876                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++.......  
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~--  156 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHREN---TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGE--  156 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCCHHHEEECCCCCEEEecCCcceecCCCC--
Confidence                                   447889999999999999   9999999999999999999999999986543211  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......|+..|+|||++.+..++.++|+||||+++|+|++|..||....... .............      .... 
T Consensus       157 ---~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~-~~~~~~~~~~~~~------~~~~-  225 (285)
T cd05632         157 ---SIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKV-KREEVDRRVLETE------EVYS-  225 (285)
T ss_pred             ---cccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhhhccc------cccC-
Confidence               1223568999999999998899999999999999999999999997432110 0011100000000      0000 


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                                           ......+.+|+..||+.||++||+     +.+++.
T Consensus       226 ---------------------~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         226 ---------------------AKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             ---------------------ccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence                                 022335678999999999999999     556555

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=1.1e-34  Score=267.00  Aligned_cols=215  Identities=20%  Similarity=0.213  Sum_probs=169.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ..+|++.+.||+|+||.||+|....+++.||+|.+........+.+.+|+.+++.++||||+++                
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecc
Confidence            3679999999999999999999988899999999976555556778899999999999999986                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   ++||||||+||+++.++.++|+|||++.......    .
T Consensus        98 ~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~---i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~----~  170 (297)
T cd06656          98 LAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ----S  170 (297)
T ss_pred             cCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEECcCccceEccCCc----c
Confidence                                357789999999999998   9999999999999999999999999987543221    1


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ......+++.|+|||.+.+..++.++|+|||||++|+|++|..||.......... .......+         .+     
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~-~~~~~~~~---------~~-----  235 (297)
T cd06656         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY-LIATNGTP---------EL-----  235 (297)
T ss_pred             CcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchhee-eeccCCCC---------CC-----
Confidence            1223457889999999998889999999999999999999999996422111000 00000000         00     


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                     ..+......+.+++.+||+.+|++||++.+|++
T Consensus       236 ---------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         236 ---------------QNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             ---------------CCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                           000123345678999999999999999999988

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=2.2e-34  Score=264.19  Aligned_cols=215  Identities=20%  Similarity=0.234  Sum_probs=166.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .+.|++.+.||.|+||.||+|.+..++..|++|.+........+.+..|+.+++.++||||+++                
T Consensus        11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   90 (292)
T cd06644          11 NEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEF   90 (292)
T ss_pred             chhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEec
Confidence            4679999999999999999999999999999999987666666788899999999999999986                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   ++||||+|+||+++.++.++|+|||++.......   
T Consensus        91 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~---  164 (292)
T cd06644          91 CPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMK---IIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTL---  164 (292)
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCC---eeecCCCcceEEEcCCCCEEEccCccceeccccc---
Confidence                                  447889999999999998   9999999999999999999999999986432211   


Q ss_pred             ccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                       .......++..|+|||++.     ...++.++|+|||||++|+|++|..||.....     ...........     .+
T Consensus       165 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~-----~~~~~~~~~~~-----~~  233 (292)
T cd06644         165 -QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP-----MRVLLKIAKSE-----PP  233 (292)
T ss_pred             -cccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccH-----HHHHHHHhcCC-----Cc
Confidence             1122355788999999884     34467899999999999999999999864211     11110000000     00


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+.                    ........+.+++.+||+.+|++||++.++++
T Consensus       234 ~~~--------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         234 TLS--------------------QPSKWSMEFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             cCC--------------------CCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            000                    00123345788999999999999999999975

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-34  Score=260.17  Aligned_cols=217  Identities=23%  Similarity=0.369  Sum_probs=168.0

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|.+.+.||.|+||.||+|.+..+ ..||||.+.... ...+.+.+|+.++++++|+||+++               
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~-~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWNGT-TKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTE   81 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEcCC-ceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEe
Confidence            356799999999999999999998654 789999987443 334678999999999999999987               


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.+++.||.|||+.+   ++|+||+|+||++++++.++|+|||++....... 
T Consensus        82 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~-  157 (261)
T cd05034          82 YMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRN---YIHRDLAARNILVGENLVCKIADFGLARLIEDDE-  157 (261)
T ss_pred             ccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcchheEEEcCCCCEEECccccceeccchh-
Confidence                                    347789999999999999   9999999999999999999999999987654311 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                        .........+..|+|||.+.+..++.++|+||||+++|+|++ |+.||......  ......            ....
T Consensus       158 --~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~------------~~~~  221 (261)
T cd05034         158 --YTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR--EVLEQV------------ERGY  221 (261)
T ss_pred             --hhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHH------------HcCC
Confidence              111112334568999999998889999999999999999998 99998642211  111100            0000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      ....                  +...+..+.+++.+||..+|++||+++++++.|+.
T Consensus       222 ~~~~------------------~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         222 RMPR------------------PPNCPEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             CCCC------------------CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            0000                  01223467899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=2e-34  Score=267.31  Aligned_cols=224  Identities=22%  Similarity=0.298  Sum_probs=168.7

Q ss_pred             cCCCCccccceecCceEEEEEEEC-------CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD-------LNRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      .++|.+.+.||+|+||.||+|...       .....||+|.+.... ......+..|+.+++.+ +||||+++       
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            457889999999999999999863       234679999987432 23345688999999999 59999876       


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.|++.||.|||+++   ++||||||+||++
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill  167 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRR---CIHRDLAARNVLV  167 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeeccccceeEEE
Confidence                                                          124679999999999999   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~  247 (356)
                      +.++.+||+|||+++........  .......++..|+|||++.+..++.++||||||+++|+|++ |..||.....   
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~---  242 (314)
T cd05099         168 TEDNVMKIADFGLARGVHDIDYY--KKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPV---  242 (314)
T ss_pred             cCCCcEEEccccccccccccccc--cccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCH---
Confidence            99999999999999765322111  11111233467999999988889999999999999999999 8899863211   


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                        ......         +.......                  .+..++..+.+++.+||+.+|++|||+.++++.|+++
T Consensus       243 --~~~~~~---------~~~~~~~~------------------~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~  293 (314)
T cd05099         243 --EELFKL---------LREGHRMD------------------KPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKV  293 (314)
T ss_pred             --HHHHHH---------HHcCCCCC------------------CCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence              111111         00000000                  0013344678999999999999999999999999999


Q ss_pred             hhhh
Q 039228          328 NNIL  331 (356)
Q Consensus       328 ~~~~  331 (356)
                      ....
T Consensus       294 ~~~~  297 (314)
T cd05099         294 LAAV  297 (314)
T ss_pred             HHHh
Confidence            7654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=9.6e-35  Score=270.37  Aligned_cols=201  Identities=25%  Similarity=0.249  Sum_probs=153.5

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHH-HHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECK-ALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|++..+++.||+|++....   ......+..|.. +++.++||||+++                   
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36899999999999999999999999987432   122344555654 6788999999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.||+.||.|||+.+   |+||||||+||+++.++.+||+|||+++.....    ....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~----~~~~  153 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLN---IIYRDLKPENILLDSQGHVVLTDFGLCKEGVEP----EETT  153 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEccCCCCccCCCC----CCcc
Confidence                              347789999999999999   999999999999999999999999998743211    1122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|||++|..||....     .......        +....+.  .   
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~~~~~~--------i~~~~~~--~---  215 (321)
T cd05603         154 STFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD-----VSQMYDN--------ILHKPLQ--L---  215 (321)
T ss_pred             ccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC-----HHHHHHH--------HhcCCCC--C---
Confidence            34568999999999998899999999999999999999999996421     1111111        1110000  0   


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP  318 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  318 (356)
                                     +......+.+++.+||+.||.+||++.
T Consensus       216 ---------------~~~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         216 ---------------PGGKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             ---------------CCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence                           002233568999999999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.3e-34  Score=294.82  Aligned_cols=217  Identities=20%  Similarity=0.266  Sum_probs=165.8

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ...++|.+++.||.|+||.||+|.+..++..||+|++....  ......+..|+.+++.++|||||++            
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34678999999999999999999999999999999987432  2334678899999999999999986            


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCC----CcEEecCCCCCCeEeCC---------
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQ----ELILHCDPKPSNVLLDN---------  170 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~----~~iiH~Dlkp~NIll~~---------  170 (356)
                                                     +.|+.||+.||.|||+.+.    .+||||||||+||||+.         
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~  169 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKIT  169 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccccccc
Confidence                                           3478899999999998531    23999999999999964         


Q ss_pred             --------CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          171 --------DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       171 --------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                              .+.+||+|||++.......     ......||+.|+|||++.+  ..++.++|||||||++|+|++|..||.
T Consensus       170 ~~~~n~ng~~iVKLsDFGlAr~l~~~s-----~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~  244 (1021)
T PTZ00266        170 AQANNLNGRPIAKIGDFGLSKNIGIES-----MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFH  244 (1021)
T ss_pred             ccccccCCCCceEEccCCccccccccc-----cccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCC
Confidence                    3458999999997653221     1234568999999999864  458899999999999999999999996


Q ss_pred             ccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHH
Q 039228          241 FMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNA  320 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~v  320 (356)
                      ...    .+..+.......       +.+..                     ......+.+|+..||..+|.+||++.++
T Consensus       245 ~~~----~~~qli~~lk~~-------p~lpi---------------------~~~S~eL~dLI~~~L~~dPeeRPSa~Ql  292 (1021)
T PTZ00266        245 KAN----NFSQLISELKRG-------PDLPI---------------------KGKSKELNILIKNLLNLSAKERPSALQC  292 (1021)
T ss_pred             cCC----cHHHHHHHHhcC-------CCCCc---------------------CCCCHHHHHHHHHHhcCChhHCcCHHHH
Confidence            321    111111111000       00000                     0123357899999999999999999999


Q ss_pred             HH
Q 039228          321 VH  322 (356)
Q Consensus       321 l~  322 (356)
                      +.
T Consensus       293 L~  294 (1021)
T PTZ00266        293 LG  294 (1021)
T ss_pred             hc
Confidence            84

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-34  Score=258.10  Aligned_cols=210  Identities=23%  Similarity=0.329  Sum_probs=161.8

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      +.||.|+||.||+|.+.. ++.||+|.+...... ....+.+|+.++++++|+||+++                      
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l   79 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSL   79 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcH
Confidence            368999999999999987 899999998754333 45678999999999999999875                      


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCC
Q 039228          135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG  198 (356)
Q Consensus       135 ----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  198 (356)
                                      +.++.+++.||.|||+++   ++||||+|+||+++.++.++|+|||++........  ......
T Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~--~~~~~~  154 (251)
T cd05041          80 LTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSREEEGGIY--TVSDGL  154 (251)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---EehhhcCcceEEEcCCCcEEEeeccccccccCCcc--eecccc
Confidence                            447778999999999999   99999999999999999999999999975432111  111112


Q ss_pred             ccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       199 ~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...+..|+|||.+.+..++.++|+||||+++|+|++ |..||......  .....            +........    
T Consensus       155 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~--~~~~~------------~~~~~~~~~----  216 (251)
T cd05041         155 KQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQ--QTRER------------IESGYRMPA----  216 (251)
T ss_pred             CcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHH--HHHHH------------HhcCCCCCC----
Confidence            233567999999988889999999999999999999 88888643211  11111            111000000    


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                                    +...+..+.+++.+||..+|++|||+.+|++.|+
T Consensus       217 --------------~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~  250 (251)
T cd05041         217 --------------PQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ  250 (251)
T ss_pred             --------------CccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence                          0123446889999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=2.5e-34  Score=259.58  Aligned_cols=216  Identities=20%  Similarity=0.280  Sum_probs=168.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|+..+.||.|+||.||+|.+..+++.||+|.+..... .....+.+|+.++++++||||+++                
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            468889999999999999999998899999999876532 344678899999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                            ..++.+++.||.|||+ .+   ++|+||+|+||+++.++.++|+|||.+........ 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~---i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~-  156 (265)
T cd06605          81 MDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHK---IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLA-  156 (265)
T ss_pred             cCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCC---eecCCCCHHHEEECCCCCEEEeecccchhhHHHHh-
Confidence                                  3477899999999999 88   99999999999999999999999999875532211 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                           ....++..|+|||++.+..++.++||||||+++|+|++|..||.............            +...+..
T Consensus       157 -----~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~------------~~~~~~~  219 (265)
T cd06605         157 -----KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFEL------------LQYIVNE  219 (265)
T ss_pred             -----hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHH------------HHHHhcC
Confidence                 11567889999999999899999999999999999999999997543211111111            1111111


Q ss_pred             ccccccccccchhhhhchhhHH-HHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRL-ECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ....               ... .....+.+++.+||..||++|||+.+++..
T Consensus       220 ~~~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         220 PPPR---------------LPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             CCCC---------------CChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            0000               000 134467899999999999999999999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=2.3e-34  Score=259.51  Aligned_cols=217  Identities=22%  Similarity=0.380  Sum_probs=167.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+.. +..+|+|.+... ......+.+|+.+++.++|+||+++               
T Consensus         4 ~~~~~~~~~~lg~g~~~~vy~~~~~~-~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~   81 (260)
T cd05073           4 PRESLKLEKKLGAGQFGEVWMATYNK-HTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEF   81 (260)
T ss_pred             cccceeEEeEecCccceEEEEEEecC-CccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEe
Confidence            35679999999999999999998764 467999988643 2234678899999999999999986               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||.+........ 
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-  157 (260)
T cd05073          82 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIEDNEY-  157 (260)
T ss_pred             CCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCC---ccccccCcceEEEcCCCcEEECCCcceeeccCCCc-
Confidence                                   347789999999999998   99999999999999999999999999976533211 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        .......++..|+|||++.+..++.++|+||||+++|++++ |..||......  .........+..           
T Consensus       158 --~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~~~~~-----------  222 (260)
T cd05073         158 --TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALERGYRM-----------  222 (260)
T ss_pred             --ccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHhCCCCC-----------
Confidence              11222345677999999998889999999999999999999 99998643211  111111110000           


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                       .                  .....+..+.+++.+||+.+|++||++.+|++.|+.
T Consensus       223 -~------------------~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         223 -P------------------RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             -C------------------CcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence             0                  001233467899999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.7e-35  Score=286.66  Aligned_cols=242  Identities=16%  Similarity=0.160  Sum_probs=161.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCC-eEEEEEEe--------------e---ccCccchHHHHHHHHHHhhcCCCCh
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNR-AVVAIKVL--------------S---IQCQGASKSFMAECKALKNICHRNL  131 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~-~~vavK~~--------------~---~~~~~~~~~~~~E~~~l~~l~h~ni  131 (356)
                      ..++|++++.||+|+||.||+|..+... ..+++|.+              .   .........+.+|+.+|++++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            3568999999999999999998764321 12222211              0   0112234567899999999999999


Q ss_pred             HHH-----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC
Q 039228          132 VRF-----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN  170 (356)
Q Consensus       132 v~l-----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~  170 (356)
                      +++                                         ..++.|++.||.|||+++   ||||||||+|||++.
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~g---IiHrDLKP~NILl~~  302 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKK---LIHRDIKLENIFLNC  302 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECC
Confidence            986                                         237789999999999999   999999999999999


Q ss_pred             CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCC-CCccccC-Ccc
Q 039228          171 DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP-IDFMFEG-DLN  248 (356)
Q Consensus       171 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~P-f~~~~~~-~~~  248 (356)
                      ++.+||+|||+++.+.....   .......||..|+|||++.+..++.++|||||||++|||++|..+ +...... ...
T Consensus       303 ~~~vkL~DFGla~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~  379 (501)
T PHA03210        303 DGKIVLGDFGTAMPFEKERE---AFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQ  379 (501)
T ss_pred             CCCEEEEeCCCceecCcccc---cccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHH
Confidence            99999999999986543221   222346789999999999999999999999999999999998754 4322111 111


Q ss_pred             HHHHHHH------hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          249 LHNFARM------AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       249 ~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +......      .++.....+.+.................+...      .....+.+++.+||+.||.+|||+.|+++
T Consensus       380 ~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        380 LLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNL------GLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             HHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhc------CCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence            1111111      12221111111111101100000111111110      12234677899999999999999999987


Q ss_pred             H
Q 039228          323 D  323 (356)
Q Consensus       323 ~  323 (356)
                      .
T Consensus       454 h  454 (501)
T PHA03210        454 L  454 (501)
T ss_pred             C
Confidence            4

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=2.4e-34  Score=269.12  Aligned_cols=223  Identities=22%  Similarity=0.307  Sum_probs=168.5

Q ss_pred             cCCCCccccceecCceEEEEEEECC-------CCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-------NRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      ..+|++.+.||+|+||.||+|.+..       ....||+|.+.... ....+.+.+|+.+++++ +||||+++       
T Consensus        11 ~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (334)
T cd05100          11 RTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   90 (334)
T ss_pred             HhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccC
Confidence            3468999999999999999998642       22478999887432 23356788999999999 79999975       


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.|++.||.|||+.+   ++||||||+||++
T Consensus        91 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---ivH~dlkp~Nill  167 (334)
T cd05100          91 GPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQK---CIHRDLAARNVLV  167 (334)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC---eeccccccceEEE
Confidence                                                          125679999999999999   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~  247 (356)
                      +.++.+||+|||+++.......  ........++..|+|||++.+..++.++||||||+++|||++ |..||....    
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~----  241 (334)
T cd05100         168 TEDNVMKIADFGLARDVHNIDY--YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP----  241 (334)
T ss_pred             cCCCcEEECCcccceecccccc--cccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC----
Confidence            9999999999999976543211  111122334567999999999899999999999999999998 889886421    


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                       ........         ........                  ...+...+.+++.+||+.+|++|||+.+|++.|+.+
T Consensus       242 -~~~~~~~~---------~~~~~~~~------------------~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~  293 (334)
T cd05100         242 -VEELFKLL---------KEGHRMDK------------------PANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRV  293 (334)
T ss_pred             -HHHHHHHH---------HcCCCCCC------------------CCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence             11111110         00000000                  012344678999999999999999999999999998


Q ss_pred             hhh
Q 039228          328 NNI  330 (356)
Q Consensus       328 ~~~  330 (356)
                      ...
T Consensus       294 ~~~  296 (334)
T cd05100         294 LTV  296 (334)
T ss_pred             hhh
Confidence            743

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.3e-34  Score=267.64  Aligned_cols=224  Identities=22%  Similarity=0.298  Sum_probs=168.8

Q ss_pred             cCCCCccccceecCceEEEEEEECC-------CCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-------NRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..       +...+|+|.+.... ......+..|+.+++.+ +||||+++       
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            3579999999999999999998643       23579999987542 23345688899999999 79999876       


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.|++.||+|||+.+   ++||||||+||++
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---i~H~dlkp~Nill  173 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVLV  173 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCC---cccccccHHheEE
Confidence                                                          135789999999999999   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~  247 (356)
                      +.++.++|+|||++.........  .......++..|+|||++.+..++.++|||||||++|+|++ |..||....    
T Consensus       174 ~~~~~~kL~dfg~a~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~----  247 (307)
T cd05098         174 TEDNVMKIADFGLARDIHHIDYY--KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP----  247 (307)
T ss_pred             cCCCcEEECCCcccccccccchh--hccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC----
Confidence            99999999999998754321110  11112234568999999998889999999999999999998 888885321    


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                       .......         +.......                  .+..+...+.+++.+||+.+|++|||+.+|++.|+++
T Consensus       248 -~~~~~~~---------~~~~~~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~  299 (307)
T cd05098         248 -VEELFKL---------LKEGHRMD------------------KPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  299 (307)
T ss_pred             -HHHHHHH---------HHcCCCCC------------------CCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHH
Confidence             1111111         11000000                  0013344678899999999999999999999999998


Q ss_pred             hhhh
Q 039228          328 NNIL  331 (356)
Q Consensus       328 ~~~~  331 (356)
                      ....
T Consensus       300 ~~~~  303 (307)
T cd05098         300 LALT  303 (307)
T ss_pred             HHHh
Confidence            7654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=4.3e-34  Score=256.87  Aligned_cols=212  Identities=20%  Similarity=0.272  Sum_probs=167.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||.|++|.||++.+..+++.||+|.+....  ....+.+.+|+.++++++|+|++++                
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            4889999999999999999999889999999986542  2334568889999999999999976                


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++....... 
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~---i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~-  156 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKH---ILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQC-  156 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCchhEEEecCCcEEEecccceEEecccC-
Confidence                                    357789999999999999   9999999999999999999999999997653322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .......+++.|+|||++.+..++.++|+||||+++|+|++|+.||....     ..........+.        + 
T Consensus       157 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~-----~~~~~~~~~~~~--------~-  219 (257)
T cd08223         157 ---DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD-----MNSLVYRIIEGK--------L-  219 (257)
T ss_pred             ---CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----HHHHHHHHHhcC--------C-
Confidence               12234567889999999999899999999999999999999999986321     111111110000        0 


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...                  .......+.+++.+||+.+|++||++.++++.
T Consensus       220 ~~~------------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         220 PPM------------------PKDYSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             CCC------------------ccccCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            000                  01233467899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=2.6e-34  Score=263.03  Aligned_cols=219  Identities=21%  Similarity=0.305  Sum_probs=167.1

Q ss_pred             cCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|++.+.||+|+||.||+|.+..     ++..||+|++..... ...+.+.+|+.++++++||||+++          
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            4679999999999999999998743     568999999875432 334568899999999999999875          


Q ss_pred             -------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCC
Q 039228          135 -------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSN  165 (356)
Q Consensus       135 -------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~N  165 (356)
                                                                       +.++.+++.||.|||+.+   ++||||||+|
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~---i~H~dl~p~n  160 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERK---FVHRDLATRN  160 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---eecccccHhh
Confidence                                                             147889999999999999   9999999999


Q ss_pred             eEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCcccc
Q 039228          166 VLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFE  244 (356)
Q Consensus       166 Ill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~  244 (356)
                      |+++.++.++|+|||++........  .........+..|+|||.+.+..++.++|||||||++|||++ |..||.....
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~  238 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADY--YKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH  238 (288)
T ss_pred             eEecCCCceEECccccceecccCcc--ccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH
Confidence            9999999999999999875432211  111122234567999999998899999999999999999998 8888853221


Q ss_pred             CCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          245 GDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                           .+.........        ....                   ...++..+.+++.+||+.+|++|||+.||++.|
T Consensus       239 -----~~~~~~~~~~~--------~~~~-------------------~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l  286 (288)
T cd05050         239 -----EEVIYYVRDGN--------VLSC-------------------PDNCPLELYNLMRLCWSKLPSDRPSFASINRIL  286 (288)
T ss_pred             -----HHHHHHHhcCC--------CCCC-------------------CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHh
Confidence                 11111110000        0000                   012344678999999999999999999999998


Q ss_pred             HH
Q 039228          325 QS  326 (356)
Q Consensus       325 ~~  326 (356)
                      +.
T Consensus       287 ~~  288 (288)
T cd05050         287 QR  288 (288)
T ss_pred             hC
Confidence            63

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3e-35  Score=273.42  Aligned_cols=202  Identities=22%  Similarity=0.220  Sum_probs=155.9

Q ss_pred             ccceecCceEEEEEEE---CCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           78 NLIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~---~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      +.||+|+||.||++..   ..+++.||+|++.....  .....+..|+.++++++||||+++                  
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999886   35689999999975322  223457789999999999999987                  


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.||+.||.|||+.+   |+||||||+||+++.++.++|+|||++.......    ..
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~----~~  154 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE----KK  154 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHeEECCCCcEEEeeccCCcccCCCC----Cc
Confidence                               447889999999999999   9999999999999999999999999987543221    12


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .....|++.|+|||.+.+..++.++|||||||++|||++|+.||.....     ......        +......  .  
T Consensus       155 ~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~-----~~~~~~--------i~~~~~~--~--  217 (318)
T cd05582         155 AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR-----KETMTM--------ILKAKLG--M--  217 (318)
T ss_pred             eecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH-----HHHHHH--------HHcCCCC--C--
Confidence            2345689999999999988899999999999999999999999964211     111111        0000000  0  


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPN  319 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~  319 (356)
                                      +......+.+++.+||+.||++||++.+
T Consensus       218 ----------------p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         218 ----------------PQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             ----------------CCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence                            0022335678999999999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.6e-34  Score=264.08  Aligned_cols=224  Identities=20%  Similarity=0.253  Sum_probs=170.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++.+.||+|+||+||+|.+..+++.||+|++.... ....+.+.+|+.+++.++||||+++                
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            56899999999999999999999889999999986543 3345678899999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                           ..++.+++.||.|||+ .+   ++|+||+|+||+++.++.++|+|||++......    
T Consensus        85 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~----  157 (284)
T cd06620          85 MDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHR---IMHRDIKPSNILVNSRGQIKLCDFGVSGELINS----  157 (284)
T ss_pred             CCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcC---eeccCCCHHHEEECCCCcEEEccCCcccchhhh----
Confidence                                 3477889999999997 56   999999999999999999999999998644221    


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                        ......++..|+|||++.+..++.++|+|||||++|+|++|..||.........      ...+..+.+.+.......
T Consensus       158 --~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  229 (284)
T cd06620         158 --IADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDG------QDDPMGILDLLQQIVQEP  229 (284)
T ss_pred             --ccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhh------hhhhhHHHHHHHHHhhcc
Confidence              112356889999999998888999999999999999999999999754322110      000011112222211111


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      ...    .          .....+..+.+++.+||+.||++|||+.+|+++.
T Consensus       230 ~~~----~----------~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~  267 (284)
T cd06620         230 PPR----L----------PSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMP  267 (284)
T ss_pred             CCC----C----------CchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCc
Confidence            000    0          0002445678999999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=4e-34  Score=256.15  Aligned_cols=209  Identities=23%  Similarity=0.332  Sum_probs=159.8

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ++||+|+||.||+|... ++..||+|.+..... .....+.+|+.+++.++||||+++                      
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   79 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDF   79 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcH
Confidence            36899999999999875 568999999875432 233468899999999999999986                      


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCC
Q 039228          135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG  198 (356)
Q Consensus       135 ----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  198 (356)
                                      +.++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........   .....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~---~~~~~  153 (250)
T cd05085          80 LSFLRKKKDELKTKQLVKFALDAAAGMAYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIY---SSSGL  153 (250)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccChheEEEcCCCeEEECCCccceecccccc---ccCCC
Confidence                            457789999999999999   99999999999999999999999999875432211   11112


Q ss_pred             ccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       199 ~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ..++..|+|||++.+..++.++||||||+++|++++ |..||......  ........            ......    
T Consensus       154 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~--~~~~~~~~------------~~~~~~----  215 (250)
T cd05085         154 KQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQ--QAREQVEK------------GYRMSC----  215 (250)
T ss_pred             CCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHHc------------CCCCCC----
Confidence            233567999999998889999999999999999998 99998643211  11111100            000000    


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                                    ...++..+.+++.+||+.+|++||++.++++.|.
T Consensus       216 --------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         216 --------------PQKCPDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             --------------CCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence                          0123446789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-34  Score=264.95  Aligned_cols=217  Identities=23%  Similarity=0.240  Sum_probs=166.6

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc---chHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---ASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|....+++.||+|.+......   ..+.+..|+.+++.++||||+++              
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            3688999999999999999999988999999999754322   34568899999999999999998              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||++.......
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~  157 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLG---IVYRDLKPENILLHESGHIMLSDFDLSKQSDVEP  157 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChHHeEEcCCCCEEEeecchhhcccccc
Confidence                                     336789999999999999   9999999999999999999999999987543221


Q ss_pred             CCC-------------------------ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcccc
Q 039228          190 NPT-------------------------QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFE  244 (356)
Q Consensus       190 ~~~-------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~  244 (356)
                      ...                         ........|+..|+|||++.+..++.++||||||+++|+|++|..||.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~  237 (316)
T cd05574         158 PPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR  237 (316)
T ss_pred             cccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch
Confidence            100                         1112235678899999999988899999999999999999999999964321


Q ss_pred             CCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC----hHHH
Q 039228          245 GDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN----VPNA  320 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs----~~~v  320 (356)
                      .. .+            ..+......-.                  ........+.+++.+||..||++||+    +.++
T Consensus       238 ~~-~~------------~~~~~~~~~~~------------------~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~l  286 (316)
T cd05574         238 DE-TF------------SNILKKEVTFP------------------GSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEI  286 (316)
T ss_pred             HH-HH------------HHHhcCCccCC------------------CccccCHHHHHHHHHHccCCHhHCCCchhhHHHH
Confidence            10 11            11111100000                  00013446789999999999999999    5555


Q ss_pred             HH
Q 039228          321 VH  322 (356)
Q Consensus       321 l~  322 (356)
                      +.
T Consensus       287 l~  288 (316)
T cd05574         287 KQ  288 (316)
T ss_pred             Hc
Confidence            54

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=4.6e-34  Score=262.36  Aligned_cols=213  Identities=18%  Similarity=0.210  Sum_probs=165.9

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      |.....||.|+||.||++....++..||||.+........+.+.+|+.+++.++||||+++                   
T Consensus        24 ~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~  103 (292)
T cd06658          24 LDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEG  103 (292)
T ss_pred             HhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCC
Confidence            4445679999999999999988899999999876555556678899999999999999997                   


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.+|+.||.|||+.+   |+||||||+||+++.++.++|+|||++.......    ....
T Consensus       104 ~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~----~~~~  176 (292)
T cd06658         104 GALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEV----PKRK  176 (292)
T ss_pred             CcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEcCCCCEEEccCcchhhccccc----ccCc
Confidence                             347889999999999999   9999999999999999999999999987543221    1123


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...++..|+|||++.+..++.++|+||||+++|||++|+.||.....  ..........        +.+.+...     
T Consensus       177 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~~~~~~~~--------~~~~~~~~-----  241 (292)
T cd06658         177 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP--LQAMRRIRDN--------LPPRVKDS-----  241 (292)
T ss_pred             eeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhc--------CCCccccc-----
Confidence            35678899999999888899999999999999999999999863211  0100000000        01111000     


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                     ......+.+++..||..||.+|||+.++++.
T Consensus       242 ---------------~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         242 ---------------HKVSSVLRGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             ---------------cccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence                           0223356789999999999999999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=6.7e-34  Score=263.45  Aligned_cols=168  Identities=27%  Similarity=0.356  Sum_probs=140.8

Q ss_pred             CCCccccceecCceEEEEEEECC--CCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDL--NRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .|.+.+.||+|+||.||+|.+..  ++..||+|.+....   ......+.+|+.+++.++||||+++             
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            47888999999999999999988  78999999997632   3445678889999999999999987             


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC----CCceEEcccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN----DLFAHIGDFE  180 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~----~~~~kl~Dfg  180 (356)
                                                    ..++.|++.||.|||+.+   |+||||||+||+++.    ++.+||+|||
T Consensus        81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg  157 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLG  157 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCC---EeeCCCCHHHEEEcCCCCccceEEECCCc
Confidence                                          247789999999999999   999999999999999    9999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCcccc
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFE  244 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~  244 (356)
                      ++......... ........++..|+|||++.+. .++.++||||||+++|+|++|++||.....
T Consensus       158 ~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~  221 (316)
T cd07842         158 LARLFNAPLKP-LADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREA  221 (316)
T ss_pred             cccccCCCccc-ccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcc
Confidence            99865433221 1223345678899999988764 578999999999999999999999975433

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=3.7e-34  Score=257.43  Aligned_cols=213  Identities=22%  Similarity=0.304  Sum_probs=163.6

Q ss_pred             ccceecCceEEEEEEECC-CC--eEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDL-NR--AVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~-~~--~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|++|.||+|.+.. ++  ..||+|.+..... ...+.+.+|+.++++++||||+++                   
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~   80 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLG   80 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCC
Confidence            368999999999999865 22  3699999976555 556789999999999999999976                   


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         +.++.|++.||.|||+.+   ++|+||+|+||+++.++.+||+|||+++........ ...
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~---i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~  156 (257)
T cd05040          81 SLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKR---FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH-YVM  156 (257)
T ss_pred             cHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCC---ccccccCcccEEEecCCEEEeccccccccccccccc-eec
Confidence                               346779999999999999   999999999999999999999999999876442221 111


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      .....++..|+|||++.+..++.++|||||||++|+|++ |..||.......  ........  .       ..+ .   
T Consensus       157 ~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~--~~~~~~~~--~-------~~~-~---  221 (257)
T cd05040         157 EEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQ--ILKKIDKE--G-------ERL-E---  221 (257)
T ss_pred             ccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHhc--C-------CcC-C---
Confidence            223456788999999998889999999999999999999 999986432111  11110000  0       000 0   


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                                      .....+..+.+++.+||+.+|++||++.+|++.|.
T Consensus       222 ----------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~  256 (257)
T cd05040         222 ----------------RPEACPQDIYNVMLQCWAHNPADRPTFAALREFLP  256 (257)
T ss_pred             ----------------CCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhc
Confidence                            00123446789999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=7.9e-35  Score=275.23  Aligned_cols=167  Identities=22%  Similarity=0.254  Sum_probs=141.2

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|....+++.||+|++....   ......+..|+.++..++||||+++              
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46899999999999999999999999999999997432   2334567889999999999999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+|||++.++.++|+|||++..+......
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~g---ivHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~  157 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLG---FIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRT  157 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEccCCCHHHEEECCCCCEEEeeccCCccccccccc
Confidence                                   347889999999999999   999999999999999999999999998754321100


Q ss_pred             -------------------------------CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          192 -------------------------------TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       192 -------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                                                     .........||+.|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~  237 (360)
T cd05627         158 EFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC  237 (360)
T ss_pred             ccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCC
Confidence                                           0001123578999999999999999999999999999999999999996


Q ss_pred             c
Q 039228          241 F  241 (356)
Q Consensus       241 ~  241 (356)
                      .
T Consensus       238 ~  238 (360)
T cd05627         238 S  238 (360)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.1e-33  Score=255.84  Aligned_cols=219  Identities=19%  Similarity=0.232  Sum_probs=167.3

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc------cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ------GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      +|+..+.||+|++|.||+|....+++.||+|.+.....      ...+.+.+|+.++++++|+||+++            
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            47888999999999999999998999999999874321      134678899999999999999998            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEcccccccccccC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~  188 (356)
                                               ..++.|++.||.|||+.+   ++|+||+|+||+++.++ .++|+|||.+......
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~---i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~  157 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQ---IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAK  157 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEcccccccccccc
Confidence                                     347789999999999999   99999999999998776 5999999999766443


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      ............++..|+|||.+.+..++.++|+||+|+++|+|++|..||......  ........        .....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~--------~~~~~  227 (268)
T cd06630         158 GTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHS--NHLALIFK--------IASAT  227 (268)
T ss_pred             cccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCc--chHHHHHH--------HhccC
Confidence            221122223456788999999998888999999999999999999999998632211  11111000        00000


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....                  .+......+.+++.+||..+|++||++.+++.
T Consensus       228 ~~~~------------------~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         228 TAPS------------------IPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             CCCC------------------CchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            0000                  11134456788999999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=9.6e-34  Score=259.37  Aligned_cols=221  Identities=20%  Similarity=0.194  Sum_probs=168.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|...+.||.|++|.||+|.+..+++.||+|.+..... .....+.+|++++++++||||+++                
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            468889999999999999999998999999999875433 345678999999999999999886                


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||.|||+.+   ++|+||+|+||++++++.++|+|||++.....
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~---i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  157 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRK---IIHRDIKPSNILLTRKGQVKLCDFGVSGELVN  157 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecCCeEEEeeccccccccc
Confidence                                       247788999999999999   99999999999999999999999999865432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..      .....++..|++||.+.+..++.++||||||+++|+|++|..||...........+..........     +
T Consensus       158 ~~------~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-----~  226 (287)
T cd06621         158 SL------AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPN-----P  226 (287)
T ss_pred             cc------cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCc-----h
Confidence            11      123456788999999998899999999999999999999999997542211111111111000000     0


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+.....                ........+.+++.+||+.+|.+|||+.||++
T Consensus       227 ~~~~~~~----------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         227 ELKDEPG----------------NGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             hhccCCC----------------CCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            0000000                00022346789999999999999999999987

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=4.1e-34  Score=259.43  Aligned_cols=211  Identities=23%  Similarity=0.328  Sum_probs=159.0

Q ss_pred             ccceecCceEEEEEEECCCCe--EEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRA--VVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..++.  .+++|.+.... ....+.+.+|+.++.++ +||||+++                   
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            368999999999999987764  46888876432 33446788999999999 79999865                   


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                        ..++.+++.||+|||+.+   ++||||||+||+++.++.+||+|||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nili~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccccceEEEcCCCeEEECCCC
Confidence                                              236678999999999998   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCC
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      ++......     ........+..|+|||++.+..++.++||||||+++|||++ |..||.....     ......    
T Consensus       158 l~~~~~~~-----~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-----~~~~~~----  223 (270)
T cd05047         158 LSRGQEVY-----VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AELYEK----  223 (270)
T ss_pred             Cccccchh-----hhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH-----HHHHHH----
Confidence            98532211     11111223567999999988889999999999999999997 9999864221     111111    


Q ss_pred             chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          260 RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                           +........                  ...+...+.+++.+||+.+|.+|||+.+++..|+.+.
T Consensus       224 -----~~~~~~~~~------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         224 -----LPQGYRLEK------------------PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             -----HhCCCCCCC------------------CCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence                 100000000                  0123345789999999999999999999999998875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=3.7e-34  Score=261.56  Aligned_cols=240  Identities=19%  Similarity=0.260  Sum_probs=170.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++...  ....+.+.+|+++++.++|+||+++               
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            36899999999999999999999999999999986432  3334678999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........  
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~--  155 (288)
T cd07833          81 YVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN---IIHRDIKPENILVSESGVLKLCDFGFARALRARPA--  155 (288)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEEeeecccccCCCcc--
Confidence                                  347789999999999999   99999999999999999999999999976543321  


Q ss_pred             ccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh--CCCchHHHh--hh
Q 039228          193 QSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA--FPNRVMDIV--NL  267 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~  267 (356)
                       .......++..|+|||++.+. .++.++|+||||+++|+|++|..||......+ .+.......  .+.......  +.
T Consensus       156 -~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  233 (288)
T cd07833         156 -SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDID-QLYLIQKCLGPLPPSHQELFSSNP  233 (288)
T ss_pred             -ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHhhhcccCc
Confidence             122335678889999999887 78999999999999999999999996432111 111111100  000000000  00


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ........ ............   +..+...+.+++.+||..+|++||++++|++
T Consensus       234 ~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         234 RFAGVAFP-EPSQPESLERRY---PGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             cccccccC-CCCCcHHHHHhc---CCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence            00000000 000000000000   0123567899999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=3.7e-34  Score=262.30  Aligned_cols=165  Identities=29%  Similarity=0.423  Sum_probs=137.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||.|++|.||+|....+++.||+|.+..... .....+.+|+.+++.++|+||+++               
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFE   83 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEe
Confidence            4679999999999999999999998899999999875432 223456789999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||+++......   
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~---  157 (291)
T cd07844          84 YLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRR---VLHRDLKPQNLLISERGELKLADFGLARAKSVPS---  157 (291)
T ss_pred             cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccCCHHHEEEcCCCCEEECccccccccCCCC---
Confidence                                  346779999999999999   9999999999999999999999999987542211   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                       .......++..|+|||++.+ ..++.++||||||+++|+|++|+.||...
T Consensus       158 -~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~  207 (291)
T cd07844         158 -KTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGS  207 (291)
T ss_pred             -ccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence             11122345788999999875 45788999999999999999999999643

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=2.1e-34  Score=263.61  Aligned_cols=217  Identities=20%  Similarity=0.259  Sum_probs=164.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcC-CCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNIC-HRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~l---------------  134 (356)
                      ++|...+.||+|+||.||++.+..+++.||+|.+.... ......+.+|+.++.++. |+||+++               
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME   83 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence            35677889999999999999999999999999987543 234457889999999996 9999985               


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                ..++.+++.||+|||+. +   ++||||||+||+++.++.++|+|||++.....
T Consensus        84 ~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  160 (288)
T cd06616          84 LMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK---IIHRDVKPSNILLDRNGNIKLCDFGISGQLVD  160 (288)
T ss_pred             cccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC---eeccCCCHHHEEEccCCcEEEeecchhHHhcc
Confidence                                      23677899999999974 7   99999999999999999999999999975532


Q ss_pred             CCCCCccCCCCccccccccchhhhcCC---CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGS---EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ..     ......++..|+|||++.+.   .++.++|||||||++|+|++|+.||....    .............    
T Consensus       161 ~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~----~~~~~~~~~~~~~----  227 (288)
T cd06616         161 SI-----AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN----SVFDQLTQVVKGD----  227 (288)
T ss_pred             CC-----ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc----hHHHHHhhhcCCC----
Confidence            21     11223578889999998766   68899999999999999999999986422    1111111110000    


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       .+.+....                  .......+.+++.+||+.+|++|||+.+|+..
T Consensus       228 -~~~~~~~~------------------~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         228 -PPILSNSE------------------EREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             -CCcCCCcC------------------CCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             00010000                  01344568899999999999999999999874

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=5.1e-34  Score=267.31  Aligned_cols=246  Identities=22%  Similarity=0.209  Sum_probs=172.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|.+.+.||+|+||.||+|++..++..||||.+...  .......+..|+.+++.++|+||+++              
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            45799999999999999999999999999999998643  22334567889999999999999876              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+.+   ++|+||||+||+++.++.+||+|||++.....
T Consensus        84 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          84 VYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSAN---VLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             EEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence                                       336789999999999999   99999999999999999999999999975532


Q ss_pred             CCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC----CCchH
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF----PNRVM  262 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~----~~~~~  262 (356)
                      ..    .......++..|+|||.+.+ ..++.++|||||||++|+|++|+.||.....  ...........    +....
T Consensus       161 ~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~  234 (337)
T cd07858         161 KG----DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDY--VHQLKLITELLGSPSEEDLG  234 (337)
T ss_pred             Cc----ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCh--HHHHHHHHHHhCCCChHHhh
Confidence            21    11223457889999998865 4688999999999999999999999964321  11111111110    00000


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH--HHHhhh
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD--LQSVNN  329 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~--L~~i~~  329 (356)
                      .+.+.......... ..   ............+...+.+++.+||+.+|++|||+.++++.  +..+..
T Consensus       235 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~  299 (337)
T cd07858         235 FIRNEKARRYIRSL-PY---TPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHD  299 (337)
T ss_pred             hcCchhhhHHHHhc-Cc---ccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcC
Confidence            00000000000000 00   00000000011345567899999999999999999999987  655543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=3.5e-34  Score=266.92  Aligned_cols=206  Identities=22%  Similarity=0.241  Sum_probs=158.2

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCC-CChHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICH-RNLVRF--------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h-~niv~l--------------  134 (356)
                      +|...+.||+|+||.||+|.+..+++.||+|++....   ....+.+..|..++..+.| ++|+++              
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            4778899999999999999999999999999997532   2334567788999988875 566655              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+|||++.++.++|+|||+++......  
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~---ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~--  155 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDG--  155 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEeccccccccCCCC--
Confidence                                   457889999999999999   9999999999999999999999999987432211  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                        .......||+.|+|||++.+..++.++|||||||++|+|++|..||.....     ......        +.....  
T Consensus       156 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~-----~~~~~~--------i~~~~~--  218 (323)
T cd05615         156 --VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE-----DELFQS--------IMEHNV--  218 (323)
T ss_pred             --ccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH-----HHHHHH--------HHhCCC--
Confidence              122335689999999999998999999999999999999999999974321     111111        110000  


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP  318 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  318 (356)
                      ...                  ......+.+++.+||+.+|.+|++..
T Consensus       219 ~~p------------------~~~~~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05615         219 SYP------------------KSLSKEAVSICKGLMTKHPSKRLGCG  247 (323)
T ss_pred             CCC------------------ccCCHHHHHHHHHHcccCHhhCCCCC
Confidence            000                  02233567899999999999999853

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=8e-34  Score=259.48  Aligned_cols=214  Identities=20%  Similarity=0.251  Sum_probs=163.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..++..||+|.+.... ......+.+|+.++++++||||+++                
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            36889999999999999999999889999999987542 2334678899999999999999988                


Q ss_pred             ------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 ------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                              ..++.+++.||.|||+ .+   |+|+||||+||+++.++.++|+|||++...... 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~-  156 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHN---IIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVAS-  156 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCC---EeeCCCCHHHEEECCCCCEEEeecCCcccccCC-
Confidence                                    3367789999999997 47   999999999999999999999999998754321 


Q ss_pred             CCCccCCCCccccccccchhhhcCCC------CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSE------VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                           ......++..|+|||.+.+..      ++.++|+|||||++|+|++|..||......  ......        ..
T Consensus       157 -----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~--~~~~~~--------~~  221 (286)
T cd06622         157 -----LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYA--NIFAQL--------SA  221 (286)
T ss_pred             -----ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchh--hHHHHH--------HH
Confidence                 122345678899999985543      478999999999999999999999642111  110000        01


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +.+.    ...               .....+...+.+++.+||+.+|++||++.+++..
T Consensus       222 ~~~~----~~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         222 IVDG----DPP---------------TLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             Hhhc----CCC---------------CCCcccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence            1110    000               0011344567899999999999999999999873

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3e-34  Score=259.49  Aligned_cols=218  Identities=23%  Similarity=0.255  Sum_probs=171.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc---chHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---ASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..++|++++.||.|.-|+||+++...++..+|+|++.+....   ...+...|..||+.++||.++++            
T Consensus        75 ~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl  154 (459)
T KOG0610|consen   75 GLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCL  154 (459)
T ss_pred             CHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEE
Confidence            345789999999999999999999999999999999865433   34567789999999999999998            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||+|||..|   ||+|||||+||||.++|++.|+||.++.....
T Consensus       155 ~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlG---ivYRDLKPENILvredGHIMLsDFDLS~~~~~  231 (459)
T KOG0610|consen  155 VMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLG---IVYRDLKPENILVREDGHIMLSDFDLSLRCPV  231 (459)
T ss_pred             EEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhc---eeeccCCcceeEEecCCcEEeeeccccccCCC
Confidence                                       237788999999999999   99999999999999999999999988743210


Q ss_pred             ---------------------------------C-C------------------CCCccCCCCccccccccchhhhcCCC
Q 039228          188 ---------------------------------V-S------------------NPTQSSSNGVRRTIGYTALDYDLGSE  215 (356)
Q Consensus       188 ---------------------------------~-~------------------~~~~~~~~~~~gt~~y~aPE~~~~~~  215 (356)
                                                       . .                  .+.......++||..|.|||++.|..
T Consensus       232 ~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~G  311 (459)
T KOG0610|consen  232 SPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEG  311 (459)
T ss_pred             CCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCC
Confidence                                             0 0                  01112335678999999999999999


Q ss_pred             CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHH
Q 039228          216 VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLEC  295 (356)
Q Consensus       216 ~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      .+.++|+|+|||++|||+.|..||.+.....             .+..++...+.-..                  ..+.
T Consensus       312 HgsAVDWWtfGIflYEmLyG~TPFKG~~~~~-------------Tl~NIv~~~l~Fp~------------------~~~v  360 (459)
T KOG0610|consen  312 HGSAVDWWTFGIFLYEMLYGTTPFKGSNNKE-------------TLRNIVGQPLKFPE------------------EPEV  360 (459)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCcCCCCchh-------------hHHHHhcCCCcCCC------------------CCcc
Confidence            9999999999999999999999998643221             22333333221000                  0133


Q ss_pred             HHHHHHHHHhhcCCCcCCCCC----hHHHH
Q 039228          296 LIFMVRIGAACSMGSSQDRMN----VPNAV  321 (356)
Q Consensus       296 ~~~l~~l~~~Cl~~dP~~RPs----~~~vl  321 (356)
                      .-.+.+||.+.|..||.+|-.    +.||-
T Consensus       361 s~~akDLIr~LLvKdP~kRlg~~rGA~eIK  390 (459)
T KOG0610|consen  361 SSAAKDLIRKLLVKDPSKRLGSKRGAAEIK  390 (459)
T ss_pred             hhHHHHHHHHHhccChhhhhccccchHHhh
Confidence            446789999999999999998    66554

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.7e-34  Score=259.46  Aligned_cols=209  Identities=25%  Similarity=0.414  Sum_probs=163.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ++|++.+.||+|+||.||++..  +++.||+|.+....  ....+.+|+.++++++|||++++                 
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~--~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~   81 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY--TGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMS   81 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc--CCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCC
Confidence            5689999999999999999975  46889999986432  34678899999999999999986                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           +.++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++.......    
T Consensus        82 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~----  154 (254)
T cd05083          82 KGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKK---LVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV----  154 (254)
T ss_pred             CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccccCcceEEEcCCCcEEECCCccceeccccC----
Confidence                                 447889999999999998   9999999999999999999999999987543211    


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                         .....+..|+|||++.+..++.++|+||||+++|+|++ |..||....     ......         .+.......
T Consensus       155 ---~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~-----~~~~~~---------~~~~~~~~~  217 (254)
T cd05083         155 ---DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMS-----LKEVKE---------CVEKGYRME  217 (254)
T ss_pred             ---CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCC-----HHHHHH---------HHhCCCCCC
Confidence               12233567999999988899999999999999999997 999986422     111111         111110000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      .                  ...++..+.+++.+||+.+|+.||++++|++.|+.
T Consensus       218 ~------------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         218 P------------------PEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             C------------------CCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            0                  01334567899999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=7e-34  Score=255.37  Aligned_cols=211  Identities=25%  Similarity=0.380  Sum_probs=165.4

Q ss_pred             ccceecCceEEEEEEECCC---CeEEEEEEeeccCccc-hHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQCQGA-SKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+...   +..|++|.+....... .+.+..|+..++.++|+||+++                   
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            4689999999999999865   8899999997554333 5788899999999999999986                   


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||.+.....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~---i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKK---FVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCC---cccCccCcceEEECCCCcEEEccccccccccc
Confidence                                       246788999999999999   99999999999999999999999999986643


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...  ........++..|+|||.+....++.++||||||+++|+|++ |..||.....     ......        +.+
T Consensus       158 ~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~--------~~~  222 (262)
T cd00192         158 DDY--YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN-----EEVLEY--------LRK  222 (262)
T ss_pred             ccc--cccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHH--------HHc
Confidence            321  122334556888999999988889999999999999999999 6999875311     111111        000


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      ....                   .....++..+.+++.+||+.+|.+|||+.++++.|+
T Consensus       223 ~~~~-------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         223 GYRL-------------------PKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             CCCC-------------------CCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            0000                   001133456889999999999999999999999873

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=4.4e-34  Score=257.92  Aligned_cols=221  Identities=22%  Similarity=0.290  Sum_probs=170.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++.+.||.|+||.||+|....++..+|+|++.... ....+.+.+|+.+++.++|+||+++                
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            47999999999999999999998888999999986443 2345778999999999999999876                


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   ++|+||+|+||++++++.++|+|||++........
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~---i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~  157 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNG---QIHRDIKAGNILLGEDGSVKIADFGVSASLADGGD  157 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHhEEEcCCCCEEEcccchHHHhccCcc
Confidence                                    346789999999999999   99999999999999999999999999976654332


Q ss_pred             CCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                      ..........++..|++||++... .++.++|+||||+++|+|++|+.||....... .+....... +.        .+
T Consensus       158 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~-~~~~~~~~~-~~--------~~  227 (267)
T cd06610         158 RTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK-VLMLTLQND-PP--------SL  227 (267)
T ss_pred             ccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhh-hHHHHhcCC-CC--------Cc
Confidence            211223445678899999998776 78899999999999999999999996432211 111111100 00        00


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....                 .....+..+.+++.+||+.||++||++.+|+.
T Consensus       228 ~~~~-----------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         228 ETGA-----------------DYKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             CCcc-----------------ccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            0000                 00133456789999999999999999999986

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=5.6e-34  Score=256.60  Aligned_cols=212  Identities=19%  Similarity=0.220  Sum_probs=167.5

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||.|+||.||+|.+..++..||+|.+....  ....+.+..|+.+++.++||||+++                
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            4888999999999999999999999999999987432  2334578899999999999999986                


Q ss_pred             ---------------------------HHHHHHHHHHHHHHh-----hcCCCcEEecCCCCCCeEeCCCCceEEcccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLH-----HHCQELILHCDPKPSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH-----~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a  182 (356)
                                                 +.++.+++.||.|||     +.+   ++|+||+|+||+++.++.++|+|||++
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~---i~h~dl~p~nili~~~~~~kl~d~g~~  157 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNT---VLHRDLKPANIFLDANNNVKLGDFGLA  157 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCc---ceecCCCHHHEEEecCCCEEEeccccc
Confidence                                       347789999999999     766   999999999999999999999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ........    ......++..|+|||.+.+..++.++|+||||+++|+|++|..||....     ........      
T Consensus       158 ~~~~~~~~----~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~------  222 (265)
T cd08217         158 KILGHDSS----FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN-----QLQLASKI------  222 (265)
T ss_pred             ccccCCcc----cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC-----HHHHHHHH------
Confidence            86543221    1223567889999999998889999999999999999999999997432     11111111      


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                         ........                  .......+.+++.+||+.+|++||++.+|+++
T Consensus       223 ---~~~~~~~~------------------~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         223 ---KEGKFRRI------------------PYRYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             ---hcCCCCCC------------------ccccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence               00000000                  01334467899999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=271.21  Aligned_cols=216  Identities=21%  Similarity=0.232  Sum_probs=173.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc---chHHHHHHHHHHhhcC-CCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---ASKSFMAECKALKNIC-HRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~-h~niv~l------------  134 (356)
                      ...|++.+.||+|.||.||+++.+.+|+.+|+|.+.+....   ....+.+|+.+|+++. |||||.+            
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            45699999999999999999999999999999999765443   3457899999999999 9999987            


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC----CCceEEcccccccccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN----DLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~----~~~~kl~Dfg~a~~~~  186 (356)
                                              ..++.+++.|+.|||+.|   |+||||||+|+|+..    ++.+|++|||++....
T Consensus       114 vmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~g---vvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLG---VVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             EEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCC---ceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence                                    347789999999999999   999999999999963    3579999999998765


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      .     .......+||+.|+|||++....|+..+||||+|+++|.|++|.+||......... .......+         
T Consensus       191 ~-----~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~-~~i~~~~~---------  255 (382)
T KOG0032|consen  191 P-----GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIF-LAILRGDF---------  255 (382)
T ss_pred             C-----CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHH-HHHHcCCC---------
Confidence            4     23445688999999999999999999999999999999999999999754322211 11111110         


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       .+...              .|.    .......+++..|+..||..|+|+.++++.
T Consensus       256 -~f~~~--------------~w~----~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  256 -DFTSE--------------PWD----DISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             -CCCCC--------------Ccc----ccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence             01111              111    334466899999999999999999999993

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=3.7e-34  Score=267.14  Aligned_cols=164  Identities=19%  Similarity=0.250  Sum_probs=132.6

Q ss_pred             ccccceec--CceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           76 LINLIGVG--SFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        76 ~~~~lg~G--~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ++++||+|  +||+||++....+++.||+|.+....  ....+.+..|+.+++.++||||+++                 
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            46789999  78999999999999999999997542  2334567789999999999999986                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC-
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP-  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~-  191 (356)
                                            ..++.|++.||.|||+.+   |+||||||+||+++.++.++++||+.+......... 
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~  158 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRL  158 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCChhhEEEecCCcEEEcccchhhccccccccc
Confidence                                  347889999999999999   999999999999999999999999875433211110 


Q ss_pred             --CccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          192 --TQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       192 --~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                        .........++..|+|||++.+  ..++.++|||||||++|||++|+.||...
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         159 RVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             cccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence              0111122356778999999876  45889999999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-34  Score=261.32  Aligned_cols=216  Identities=21%  Similarity=0.285  Sum_probs=168.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||.|+||.||+|.+..++..||+|.+........+.+..|+.++++++||||+++                
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence            4679999999999999999999988899999999986655566788999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++.......   
T Consensus        84 ~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~---i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~---  157 (280)
T cd06611          84 CDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHK---VIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTL---  157 (280)
T ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEECCCCCEEEccCccchhhcccc---
Confidence                                  447889999999999999   9999999999999999999999999986543221   


Q ss_pred             ccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                       .......++..|++||.+.     ...++.++|+||||+++|+|++|+.||....... ....... ..+        +
T Consensus       158 -~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~-~~~--------~  226 (280)
T cd06611         158 -QKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMR-VLLKILK-SEP--------P  226 (280)
T ss_pred             -cccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHH-HHHHHhc-CCC--------C
Confidence             1223356788999999875     3456789999999999999999999986431110 0100000 000        0


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .+.                    ........+.+++..||+.+|.+||++.++++.
T Consensus       227 ~~~--------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         227 TLD--------------------QPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             CcC--------------------CcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            000                    001233457889999999999999999999764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1.1e-33  Score=255.08  Aligned_cols=218  Identities=23%  Similarity=0.309  Sum_probs=168.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc--chHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG--ASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|+||.||+|....+++.||+|.+......  ..+.+..|+.+++.++|+||+++                
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            488889999999999999999888999999999765443  56788999999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   |+|+||+|+||++++++.+||+|||++...........
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~  157 (264)
T cd06626          81 CSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHG---IVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMG  157 (264)
T ss_pred             CCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEcccccccccCCCCCccc
Confidence                                 347889999999999999   99999999999999999999999999987644332222


Q ss_pred             cCCCCccccccccchhhhcCCC---CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSE---VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~---~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                      .......++..|++||++.+..   ++.++||||||+++|+|++|..||.......   ........ ..     .+.+.
T Consensus       158 ~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~---~~~~~~~~-~~-----~~~~~  228 (264)
T cd06626         158 EEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEF---QIMFHVGA-GH-----KPPIP  228 (264)
T ss_pred             ccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchH---HHHHHHhc-CC-----CCCCC
Confidence            1122356788999999998766   8899999999999999999999996432111   00000000 00     00000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .                    .......+.+++.+||+.+|.+||++.+++.
T Consensus       229 ~--------------------~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         229 D--------------------SLQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             c--------------------ccccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            0                    0022445679999999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=7.5e-34  Score=258.66  Aligned_cols=213  Identities=21%  Similarity=0.245  Sum_probs=168.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ..|+..+.||.|+||.||+|.+..++..||+|.+.... ......+.+|+.+++.++||||+++                
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            35788899999999999999999889999999987543 3345678899999999999999987                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    .
T Consensus        84 ~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~---ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~----~  156 (277)
T cd06640          84 LGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEK---KIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ----I  156 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCcCCChhhEEEcCCCCEEEcccccceeccCCc----c
Confidence                                357789999999999998   9999999999999999999999999997553221    1


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ......++..|+|||++.+..++.++|+||||+++|||++|..||.......  ...            .+......   
T Consensus       157 ~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~~~------------~~~~~~~~---  219 (277)
T cd06640         157 KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMR--VLF------------LIPKNNPP---  219 (277)
T ss_pred             ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHh--Hhh------------hhhcCCCC---
Confidence            1223457888999999988889999999999999999999999986432110  000            00000000   


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                     .....++..+.+++.+||+.+|++||++.+++..
T Consensus       220 ---------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         220 ---------------TLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             ---------------CCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence                           0112455678899999999999999999999776

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=267.48  Aligned_cols=220  Identities=19%  Similarity=0.250  Sum_probs=177.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc--chHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG--ASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .+-|.+.+.||+|.|..|-+|++.-+|..||||++.+....  ....+.+|++.|+-++|||||++              
T Consensus        17 AGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiL   96 (864)
T KOG4717|consen   17 AGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLIL   96 (864)
T ss_pred             eeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEE
Confidence            45588999999999999999999999999999999765433  34578999999999999999998              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEcccccccccccCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                              ..++.||+.|+.|+|+..   +|||||||+|+.+- .-|-+||+|||++..+..+ 
T Consensus        97 ELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLH---VVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG-  172 (864)
T KOG4717|consen   97 ELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLH---VVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPG-  172 (864)
T ss_pred             EecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhh---hhcccCCcceeEEeeecCceEeeeccccccCCCc-
Confidence                                    347889999999999988   99999999999775 5688999999999765433 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCC-CccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVS-TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                          ......+|++.|.|||++.+..|+ +++||||||||||.|++|++||+...+..             .+..++|-.
T Consensus       173 ----~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSE-------------TLTmImDCK  235 (864)
T KOG4717|consen  173 ----KKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSE-------------TLTMIMDCK  235 (864)
T ss_pred             ----chhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchh-------------hhhhhhccc
Confidence                334568899999999999999987 67899999999999999999998654432             223333332


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH--HHHhhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD--LQSVNNIL  331 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~--L~~i~~~~  331 (356)
                      ..                    .+.....++.+||..||..||.+|.+.++|...  |+.+.+.+
T Consensus       236 Yt--------------------vPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~~~  280 (864)
T KOG4717|consen  236 YT--------------------VPSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGDRGL  280 (864)
T ss_pred             cc--------------------CchhhhHHHHHHHHHHHhcCchhhccHHHHhccccccCCCCCc
Confidence            21                    112455567899999999999999999988753  44444433

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.6e-34  Score=269.70  Aligned_cols=207  Identities=21%  Similarity=0.268  Sum_probs=156.7

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|....+++.||+|++....   ....+.+..|+.++.++ +||||+++                   
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            36999999999999999999999999997542   23345678899999888 59999886                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++......    ...
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~----~~~  153 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERG---IIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPG----DTT  153 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEeCCCCEEEeccccceeccCCC----Cce
Confidence                              347889999999999999   9999999999999999999999999987432111    122


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC-ccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-LNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      ....||+.|+|||++.+..++.++|||||||++|+|++|..||....... ..........       +......     
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~-------~~~~~~~-----  221 (327)
T cd05617         154 STFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQV-------ILEKPIR-----  221 (327)
T ss_pred             ecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHH-------HHhCCCC-----
Confidence            34678999999999999999999999999999999999999996432211 1111111000       0000000     


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP  318 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  318 (356)
                                     .+......+.+++.+||+.||.+||++.
T Consensus       222 ---------------~p~~~~~~~~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         222 ---------------IPRFLSVKASHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             ---------------CCCCCCHHHHHHHHHHhccCHHHcCCCC
Confidence                           0001223567899999999999999853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=1e-33  Score=258.44  Aligned_cols=241  Identities=19%  Similarity=0.191  Sum_probs=168.6

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||.|+||.||+|.+..++..||+|++....  ....+.+.+|+.++++++||||+++                
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            4888999999999999999999889999999987543  3335678899999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.||+.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........   
T Consensus        81 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~---  154 (286)
T cd07832          81 MPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANG---IMHRDLKPANLLISADGVLKIADFGLARLFSEEEP---  154 (286)
T ss_pred             cCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC---
Confidence                                 347789999999999999   99999999999999999999999999976543221   


Q ss_pred             cCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC-CchHHHhhhhhcc
Q 039228          194 SSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP-NRVMDIVNLVLLN  271 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~  271 (356)
                      .......++..|+|||++.+. .++.++||||+|+++|+|++|.+||.....  ..........+. .....+-.-.-..
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07832         155 RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGEND--IEQLAIVFRTLGTPNEETWPGLTSLP  232 (286)
T ss_pred             CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCH--HHHHHHHHHHcCCCChHHHhhccCcc
Confidence            122335678899999988654 468899999999999999999888754221  111111111111 0000000000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +..  .................+....+.+++.+||+.+|++||++++++..
T Consensus       233 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         233 DYN--KITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             hhh--cccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            000  00000000000000111334678899999999999999999999863

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-33  Score=299.22  Aligned_cols=231  Identities=19%  Similarity=0.307  Sum_probs=181.2

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ..|....+||+|+||.||+|.+..++..||||.+......    ...|+..+++++|||||++                 
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~  765 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYI  765 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCC
Confidence            4577788999999999999999888999999998643221    2346889999999999987                 


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.|++.||+|||..+.++|+||||||+||+++.++..++. ||.......        ..
T Consensus       766 ~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~--------~~  836 (968)
T PLN00113        766 EGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT--------DT  836 (968)
T ss_pred             CCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc--------CC
Confidence                             4578899999999996544559999999999999998888775 665432211        11


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC-chHHHhhhhhccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN-RVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  276 (356)
                      ...++..|+|||++.+..++.++|||||||++|||+||+.||+...........|.+..+.. ....++++.+.....  
T Consensus       837 ~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  914 (968)
T PLN00113        837 KCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVS--  914 (968)
T ss_pred             CccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCC--
Confidence            23578899999999999999999999999999999999999976555555677776665533 344455554432211  


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                                    ...++...+.+++.+||+.||++||||.+|+++|+++....
T Consensus       915 --------------~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~  955 (968)
T PLN00113        915 --------------VNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSS  955 (968)
T ss_pred             --------------ccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhccc
Confidence                          12355667889999999999999999999999999987754

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=9.1e-34  Score=266.49  Aligned_cols=246  Identities=20%  Similarity=0.223  Sum_probs=171.8

Q ss_pred             HHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------
Q 039228           64 YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------  134 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------  134 (356)
                      ..++....++|.+.+.||+|+||.||+|.+..+++.||+|++....  ....+.+.+|+.++++++||||+++       
T Consensus         9 ~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~   88 (345)
T cd07877           9 NKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPA   88 (345)
T ss_pred             HHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeec
Confidence            3455567899999999999999999999998889999999986432  2234567889999999999999875       


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                        ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||
T Consensus        89 ~~~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIll~~~~~~kl~dfg  165 (345)
T cd07877          89 RSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFG  165 (345)
T ss_pred             ccccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEcCCCCEEEeccc
Confidence                                              237789999999999999   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--  257 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--  257 (356)
                      ++.....       ......++..|+|||.+.+ ..++.++|||||||++|+|++|+.||...... ..+........  
T Consensus       166 ~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~-~~~~~~~~~~~~~  237 (345)
T cd07877         166 LARHTDD-------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTP  237 (345)
T ss_pred             ccccccc-------cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCC
Confidence            9875422       1223467888999998866 56788999999999999999999999642211 11111111110  


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +......+.......+..   ..+.................+.+++.+|++.||.+||++.+++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  300 (345)
T cd07877         238 GAELLKKISSESARNYIQ---SLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  300 (345)
T ss_pred             CHHHHhhcccHhHHHHHH---HhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcC
Confidence            011110000000000000   000000000000000123357899999999999999999998865

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=4.4e-34  Score=260.63  Aligned_cols=221  Identities=20%  Similarity=0.250  Sum_probs=168.4

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      +..++..+.+.|++.+.||.|+||.||+|.+..+++.||+|++.... .....+..|+.++.++ +|+||+++       
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            33455556788999999999999999999999899999999986543 2345678899999988 69998864       


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEE
Q 039228          135 --------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHI  176 (356)
Q Consensus       135 --------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl  176 (356)
                                                            ..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---ivH~dl~~~nili~~~~~~~l  162 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHK---VIHRDIKGQNVLLTENAEVKL  162 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEE
Confidence                                                  336778999999999999   999999999999999999999


Q ss_pred             cccccccccccCCCCCccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHH
Q 039228          177 GDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       177 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~  251 (356)
                      +|||++.......    .......++..|+|||.+.     +..++.++|+|||||++|+|++|..||......    ..
T Consensus       163 ~dfg~~~~~~~~~----~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~----~~  234 (282)
T cd06636         163 VDFGVSAQLDRTV----GRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPM----RA  234 (282)
T ss_pred             eeCcchhhhhccc----cCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHH----hh
Confidence            9999987543211    1223456888999999875     346788999999999999999999999642211    00


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..         .+..... ...                 ....++..+.+++.+||+.||.+|||+.+|++
T Consensus       235 ~~---------~~~~~~~-~~~-----------------~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         235 LF---------LIPRNPP-PKL-----------------KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             hh---------hHhhCCC-CCC-----------------cccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            00         0000000 000                 00123446789999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.2e-33  Score=260.24  Aligned_cols=213  Identities=20%  Similarity=0.208  Sum_probs=165.6

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      |.....||.|+||.||+|.+..+++.||+|.+........+.+.+|+.+++.++||||+++                   
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            4445579999999999999988899999999976555556678899999999999999987                   


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    ....
T Consensus       103 ~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~----~~~~  175 (297)
T cd06659         103 GALTDIVSQTRLNEEQIATVCESVLQALCYLHSQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV----PKRK  175 (297)
T ss_pred             CCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHeEEccCCcEEEeechhHhhccccc----cccc
Confidence                             347889999999999999   9999999999999999999999999987543221    1123


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...++..|+|||++.+..++.++||||||+++|||++|+.||.....  ..............        ..       
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~~~~~~~~~~~~~--------~~-------  238 (297)
T cd06659         176 SLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKRLRDSPPPK--------LK-------  238 (297)
T ss_pred             ceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHhccCCCC--------cc-------
Confidence            35678999999999988899999999999999999999999863211  01000000000000        00       


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                   ........+.+++.+||+.+|++||++.+|++.
T Consensus       239 -------------~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         239 -------------NAHKISPVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             -------------ccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence                         000223356789999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=4.7e-34  Score=260.91  Aligned_cols=224  Identities=20%  Similarity=0.248  Sum_probs=169.2

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      .+..+....++|++.+.||+|+||.||+|.+..+++.+|+|++... ......+.+|+.+++.+ +||||+++       
T Consensus         9 ~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   87 (286)
T cd06638           9 IFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPI-HDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK   87 (286)
T ss_pred             EeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccc-cchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence            3445566788999999999999999999999999999999997643 22345678899999999 69999975       


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceE
Q 039228          135 ---------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH  175 (356)
Q Consensus       135 ---------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~k  175 (356)
                                                             ..++.+++.||.|||+.+   ++||||||+||+++.++.++
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~nili~~~~~~k  164 (286)
T cd06638          88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNK---TIHRDVKGNNILLTTEGGVK  164 (286)
T ss_pred             ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCC---ccccCCCHHhEEECCCCCEE
Confidence                                                   226778999999999998   99999999999999999999


Q ss_pred             EcccccccccccCCCCCccCCCCccccccccchhhhcC-----CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHH
Q 039228          176 IGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-----SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLH  250 (356)
Q Consensus       176 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~  250 (356)
                      |+|||++.......    .......|+..|+|||++..     ..++.++|||||||++|+|++|+.||.....    ..
T Consensus       165 l~dfg~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~----~~  236 (286)
T cd06638         165 LVDFGVSAQLTSTR----LRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHP----MR  236 (286)
T ss_pred             EccCCceeecccCC----CccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCch----hH
Confidence            99999987653221    12223468899999998753     4478899999999999999999999864311    11


Q ss_pred             HHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          251 NFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      ...... ..     ..+.+. .                   +......+.+++.+||+.||++|||+.+|++.+
T Consensus       237 ~~~~~~-~~-----~~~~~~-~-------------------~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         237 ALFKIP-RN-----PPPTLH-Q-------------------PELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             HHhhcc-cc-----CCCccc-C-------------------CCCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            110000 00     000000 0                   001223578999999999999999999998753

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=3.4e-34  Score=273.88  Aligned_cols=223  Identities=22%  Similarity=0.272  Sum_probs=168.2

Q ss_pred             hcCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcC-CCChHHH--------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNIC-HRNLVRF--------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~l--------  134 (356)
                      ..++|.+.+.||+|+||.||+|++.     .++..||+|+++.... ...+.+..|+.+|.++. ||||+++        
T Consensus        35 ~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~  114 (401)
T cd05107          35 PRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGG  114 (401)
T ss_pred             cHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCC
Confidence            3456888999999999999999964     3457899999975422 23457889999999998 9999876        


Q ss_pred             -----------------H--------------------------------------------------------------
Q 039228          135 -----------------I--------------------------------------------------------------  135 (356)
Q Consensus       135 -----------------~--------------------------------------------------------------  135 (356)
                                       +                                                              
T Consensus       115 ~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (401)
T cd05107         115 PIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQD  194 (401)
T ss_pred             CcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhc
Confidence                             0                                                              


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeE
Q 039228          136 ------------------------------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVL  167 (356)
Q Consensus       136 ------------------------------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIl  167 (356)
                                                                      .++.|++.||.|||+.+   ++||||||+|||
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrdlkp~NiL  271 (401)
T cd05107         195 MKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKN---CVHRDLAARNVL  271 (401)
T ss_pred             chhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCC---cCcccCCcceEE
Confidence                                                            14468999999999998   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCC
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGD  246 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~  246 (356)
                      ++.++.++|+|||+++.......  ........++..|+|||.+.+..++.++||||||+++|||++ |..||.......
T Consensus       272 l~~~~~~kL~DfGla~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~  349 (401)
T cd05107         272 ICEGKLVKICDFGLARDIMRDSN--YISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNE  349 (401)
T ss_pred             EeCCCEEEEEecCcceecccccc--cccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchH
Confidence            99999999999999976432221  111223456788999999998889999999999999999998 899986432111


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                       .+.            ..+........                  +..+...+.+++.+||+.+|.+||++++|++.|+.
T Consensus       350 -~~~------------~~~~~~~~~~~------------------p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~  398 (401)
T cd05107         350 -QFY------------NAIKRGYRMAK------------------PAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGD  398 (401)
T ss_pred             -HHH------------HHHHcCCCCCC------------------CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence             000            11111100000                  01233467899999999999999999999999987


Q ss_pred             hh
Q 039228          327 VN  328 (356)
Q Consensus       327 i~  328 (356)
                      +.
T Consensus       399 ~~  400 (401)
T cd05107         399 LL  400 (401)
T ss_pred             Hh
Confidence            63

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-35  Score=277.17  Aligned_cols=212  Identities=21%  Similarity=0.332  Sum_probs=170.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS---------------  136 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~---------------  136 (356)
                      +.|.|+..||.|+||.||+|..+.++...|.|++.....+..+.++-|+.||...+||+||++++               
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence            45788899999999999999999998888999998877788889999999999999999999832               


Q ss_pred             -----------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          137 -----------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       137 -----------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                             +|.+++.||.|||++.   |||||||..|||++-+|.++|+|||.+....    ...
T Consensus       112 ~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~---iIHRDLKAGNiL~TldGdirLADFGVSAKn~----~t~  184 (1187)
T KOG0579|consen  112 GGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQN---IIHRDLKAGNILLTLDGDIRLADFGVSAKNK----STR  184 (1187)
T ss_pred             CCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcc---hhhhhccccceEEEecCcEeeecccccccch----hHH
Confidence                                   7889999999999998   9999999999999999999999999985332    223


Q ss_pred             cCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCchHHHhh
Q 039228          194 SSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNRVMDIVN  266 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~  266 (356)
                      .....+.||+.|||||+..     ..+|+.++||||||++|.||..+.+|-.....    +.-......  |..+   + 
T Consensus       185 qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnp----MRVllKiaKSePPTL---l-  256 (1187)
T KOG0579|consen  185 QKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNP----MRVLLKIAKSEPPTL---L-  256 (1187)
T ss_pred             hhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccch----HHHHHHHhhcCCCcc---c-
Confidence            3445689999999999864     46799999999999999999999999643211    111111110  1111   1 


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                         .+                     ..-...+.+++..||..||..||++.+|++
T Consensus       257 ---qP---------------------S~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  257 ---QP---------------------SHWSRSFSDFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             ---Cc---------------------chhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence               11                     122335678999999999999999999875

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.4e-34  Score=266.03  Aligned_cols=164  Identities=24%  Similarity=0.280  Sum_probs=138.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+++...+++.||+|++...   .....+.+..|+.++..++|+||+++              
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            4799999999999999999999999999999999742   22234567889999999999999986              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||++........
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  157 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLG---YVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGT  157 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEECCCCHHHEEECCCCCEEEEECCceeecCCCCC
Confidence                                    347789999999999999   99999999999999999999999999875433221


Q ss_pred             CCccCCCCccccccccchhhhcC-----CCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLG-----SEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         .......||+.|+|||++..     ..++.++|||||||++|+|++|+.||..
T Consensus       158 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  210 (331)
T cd05597         158 ---VQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             ---ccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCC
Confidence               11223468999999999863     4578899999999999999999999963

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=5.5e-34  Score=258.00  Aligned_cols=212  Identities=24%  Similarity=0.343  Sum_probs=160.6

Q ss_pred             ccceecCceEEEEEEECCCC------eEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNR------AVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~------~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +.||+|+||.||+|......      ..+|+|.+.... ......+.+|+.+++.++||||+++                
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            36899999999999986543      789999886442 2345678899999999999999976                


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-----ceEEccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-----FAHIGDFEL  181 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-----~~kl~Dfg~  181 (356)
                                                  +.++.+++.||.|||+.+   ++|+||+|+||+++.++     .++|+|||+
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMH---FIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCC---cccCCCChheEEEecCCCCCCcceEECCccc
Confidence                                        236779999999999998   99999999999999877     899999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCc
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      +........  ........++..|+|||++.+..++.++|||||||++|+|++ |..||.....  ......        
T Consensus       158 ~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~--~~~~~~--------  225 (269)
T cd05044         158 ARDIYKSDY--YRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN--QEVLQH--------  225 (269)
T ss_pred             ccccccccc--cccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH--HHHHHH--------
Confidence            975532211  111222345678999999999999999999999999999998 9999863221  111111        


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                          +.......                  .....+..+.+++.+||+.+|.+||++.+|++.|++
T Consensus       226 ----~~~~~~~~------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         226 ----VTAGGRLQ------------------KPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             ----HhcCCccC------------------CcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence                00000000                  001344567899999999999999999999999863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=7.2e-34  Score=256.91  Aligned_cols=202  Identities=18%  Similarity=0.273  Sum_probs=153.1

Q ss_pred             ccceecCceEEEEEEECC------------CCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           78 NLIGVGSFDAVYQGVFDL------------NRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~------------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      +.||+|+||.||+|....            ....|++|.+..........+..|+.+++.++||||+++           
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            368999999999998642            234689998876555555678889999999999999987           


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc-------eEEcccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF-------AHIGDFE  180 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~-------~kl~Dfg  180 (356)
                                                 +.++.||+.||+|||+.+   |+||||||+|||++.++.       ++++|||
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g  157 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKD---LVHGNVCTKNILLAREGIDGECGPFIKLSDPG  157 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCC---eECCCCCcccEEEecCCccCCCCceeEeCCCC
Confidence                                       458889999999999999   999999999999986654       8999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhc-CCCCCCccchHhHHHHHHHHH-cCCCCCCccccCCccHHHHHHHhCC
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDL-GSEVSTNGDAYNYGILLLEMV-TRRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~sDiwSlG~~l~ell-tg~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      ++.....        .....++..|+|||++. +..++.++|||||||++|||+ +|..||......  .....      
T Consensus       158 ~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~--~~~~~------  221 (262)
T cd05077         158 IPITVLS--------RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLA--EKERF------  221 (262)
T ss_pred             CCccccC--------cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchh--HHHHH------
Confidence            9864421        12245678899999886 466889999999999999997 588887632111  00000      


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                            ........                    ......+.+|+.+||+.||++||++.+|++.|
T Consensus       222 ------~~~~~~~~--------------------~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         222 ------YEGQCMLV--------------------TPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             ------HhcCccCC--------------------CCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence                  00000000                    01123578999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=8.5e-34  Score=254.90  Aligned_cols=211  Identities=20%  Similarity=0.238  Sum_probs=167.2

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|+||.||++....+++.||+|.+....  ....+.+.+|+.++++++||||+++                
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            4888999999999999999999899999999987432  2334578899999999999999987                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........ 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~-  156 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE-  156 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEEeeccceeecCcchh-
Confidence                                   457889999999999998   99999999999999999999999999975533211 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......++..|+|||+..+..++.++|+||||+++|+|++|..||....     ..            +.+...+.+
T Consensus       157 ---~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~-----~~------------~~~~~~~~~  216 (256)
T cd08218         157 ---LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN-----MK------------NLVLKIIRG  216 (256)
T ss_pred             ---hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCC-----HH------------HHHHHHhcC
Confidence               1123457888999999988889999999999999999999999986321     11            111111111


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....               ........+.+++.+||+.+|++||++.+|++
T Consensus       217 ~~~~---------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         217 SYPP---------------VSSHYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             CCCC---------------CcccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            1100               00133446789999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.5e-33  Score=255.43  Aligned_cols=215  Identities=18%  Similarity=0.267  Sum_probs=154.9

Q ss_pred             ccceecCceEEEEEEECC--CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDL--NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      +.||+|+||.||+|.+..  ++..+|+|.+..... .....+.+|+.++++++||||+++                    
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            368999999999998653  456899998865432 233578889999999999999986                    


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   ++|+||||+||+++.++.++|+|||+++.......  
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~--  155 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNN---FIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDY--  155 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC---EeccccCcceEEEcCCCcEEECCccccccccCcce--
Confidence                                  236779999999999999   99999999999999999999999999874332111  


Q ss_pred             ccCCCCccccccccchhhhcCC-------CCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          193 QSSSNGVRRTIGYTALDYDLGS-------EVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~-------~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ........++..|+|||++.+.       .++.++||||||+++|||++ |..||.......  .....   .......+
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~--~~~~~---~~~~~~~~  230 (269)
T cd05087         156 YVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQ--VLTYT---VREQQLKL  230 (269)
T ss_pred             eecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHH--HHHHH---hhcccCCC
Confidence            1122334567889999998642       35789999999999999996 999996432211  11110   00000000


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      .++.+..                      .....+.+++..|| .+|++|||+++|+..|+
T Consensus       231 ~~~~~~~----------------------~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         231 PKPRLKL----------------------PLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCCccCC----------------------CCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            1111100                      12234678999999 68999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.2e-33  Score=255.40  Aligned_cols=215  Identities=19%  Similarity=0.219  Sum_probs=164.2

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-----ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+|++.+.||+|+||.||.|.+..++..||+|.+....     ....+.+.+|+.++++++||||+++            
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            47999999999999999999999999999999986321     1224578889999999999999975            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.....
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~  158 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRLQT  158 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEecCCCCEEECcCcccccccc
Confidence                                       447889999999999999   99999999999999999999999999875532


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .... ........++..|+|||.+.+..++.++|+||||+++|+|++|+.||....    ............        
T Consensus       159 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~----~~~~~~~~~~~~--------  225 (265)
T cd06652         159 ICLS-GTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE----AMAAIFKIATQP--------  225 (265)
T ss_pred             cccc-ccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc----hHHHHHHHhcCC--------
Confidence            2111 111223457889999999988889999999999999999999999986321    111111100000        


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       ...                  ..+......+.+++.+|+. +|++||++++|++
T Consensus       226 -~~~------------------~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         226 -TNP------------------VLPPHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             -CCC------------------CCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence             000                  0011333456788889984 9999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.2e-33  Score=253.71  Aligned_cols=211  Identities=21%  Similarity=0.257  Sum_probs=164.5

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-----ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      +|+..+.||+|+||.||+|....++..|++|.+....     ....+.+.+|+.+++.++|+||+++             
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            4777889999999999999998888999999986543     2244678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.+++.||.|||+.+   ++|+||+|+||+++.++.+||+|||++....... 
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~-  156 (258)
T cd06632          81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS-  156 (258)
T ss_pred             EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEccCccceeccccc-
Confidence                                    347789999999999999   9999999999999999999999999987653322 


Q ss_pred             CCccCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          ......++..|++||.+.... ++.++|+||||+++|+|++|..||.....    ............        .
T Consensus       157 ----~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~----~~~~~~~~~~~~--------~  220 (258)
T cd06632         157 ----FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG----VAAVFKIGRSKE--------L  220 (258)
T ss_pred             ----cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH----HHHHHHHHhccc--------C
Confidence                123356788899999987766 88999999999999999999999964321    100000000000        0


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       ..                  ........+.+++.+||+.+|++||++.+++.
T Consensus       221 -~~------------------~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         221 -PP------------------IPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             -CC------------------cCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence             00                  00122345678999999999999999999975

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=9.9e-34  Score=254.46  Aligned_cols=213  Identities=17%  Similarity=0.237  Sum_probs=168.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|+..+.||.|+||.||.+....++..+++|.+....  ....+.+.+|+.++++++|+||+++                
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            5888999999999999999999999999999986542  3445678899999999999999987                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   ++|+||+|+||+++.++.+||+|||++........ 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~-  156 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAG---ILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS-  156 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChHhEEEeCCCCEEECcCcceEEcccccc-
Confidence                                   346788999999999998   99999999999999999999999999976533221 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......++..|+|||++.+..++.++|+||||+++|+|++|..||....     .......            ....
T Consensus       157 ---~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~-----~~~~~~~------------~~~~  216 (256)
T cd08221         157 ---MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATN-----PLNLVVK------------IVQG  216 (256)
T ss_pred             ---cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHH------------HHcC
Confidence               2234567899999999988888999999999999999999999986321     1111111            1111


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      ....               ........+.+++.+||+.+|++||++.++++.+
T Consensus       217 ~~~~---------------~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         217 NYTP---------------VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             CCCC---------------CccccCHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence            0000               0012344678999999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=8.2e-34  Score=254.99  Aligned_cols=213  Identities=21%  Similarity=0.361  Sum_probs=163.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .+|++.+.||+|+||.||+|.+.. +..+|+|.+.... .....+..|+.++++++|||++++                 
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~~~~k~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLE-KRKVAIKTIREGA-MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeC-CCeEEEEECCCCC-CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            468889999999999999998864 5789999886432 234678899999999999999987                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   ++|+||||+||+++.++.++|+|||++.......   .
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~---~  155 (256)
T cd05112          82 EHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQ---Y  155 (256)
T ss_pred             CCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccccceEEEcCCCeEEECCCcceeecccCc---c
Confidence                                 347788999999999999   9999999999999999999999999987543221   1


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      .......++..|+|||++.+..++.++||||||+++|||++ |..||.....     .......         .......
T Consensus       156 ~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-----~~~~~~~---------~~~~~~~  221 (256)
T cd05112         156 TSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSN-----SEVVETI---------NAGFRLY  221 (256)
T ss_pred             cccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCH-----HHHHHHH---------hCCCCCC
Confidence            11122334678999999998889999999999999999998 9999864221     1111110         0000000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      ..                  ...+..+.+|+.+||+.+|++|||+.++++.|
T Consensus       222 ~~------------------~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         222 KP------------------RLASQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             CC------------------CCCCHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence            00                  01234678999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.5e-33  Score=252.90  Aligned_cols=213  Identities=23%  Similarity=0.389  Sum_probs=164.9

Q ss_pred             CCccccceecCceEEEEEEECCCC----eEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNR----AVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      |++.+.||.|+||.||+|.+...+    ..||+|.+...... ..+.+..|+.++..++|+||+++              
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            456789999999999999998765    89999999755433 46788999999999999999987              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||+|||+.+   ++|+||+|+||++++++.++|+|||++.......
T Consensus        81 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~---~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  157 (258)
T smart00219       81 EYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKN---FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD  157 (258)
T ss_pred             eccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCC---eeecccccceEEEccCCeEEEcccCCceeccccc
Confidence                                     347788999999999999   9999999999999999999999999997654332


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      ...   .....++..|+|||.+.+..++.++|+||||+++|+|++ |..||....  ............           
T Consensus       158 ~~~---~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~--~~~~~~~~~~~~-----------  221 (258)
T smart00219      158 YYK---KKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS--NEEVLEYLKKGY-----------  221 (258)
T ss_pred             ccc---cccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHhcCC-----------
Confidence            111   112336788999999988889999999999999999998 888886421  111111110000           


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                       ...                  .....+..+.+++.+||..+|++|||+.++++.|
T Consensus       222 -~~~------------------~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      222 -RLP------------------KPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             -CCC------------------CCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence             000                  0012344678999999999999999999999864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=5.3e-34  Score=261.38  Aligned_cols=223  Identities=22%  Similarity=0.251  Sum_probs=169.0

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      ...++..++++|.+.+.||+|+||.||+|....+++.+|+|.+.... .....+..|+.+++++ +|||++++       
T Consensus        13 ~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~   91 (291)
T cd06639          13 GLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYKA   91 (291)
T ss_pred             hcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEec
Confidence            33455667889999999999999999999999999999999986432 2345677899999998 79999875       


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceE
Q 039228          135 ---------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH  175 (356)
Q Consensus       135 ---------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~k  175 (356)
                                                             ..++.+++.||.|||+.+   ++|+||||+||+++.++.++
T Consensus        92 ~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~dlkp~nili~~~~~~k  168 (291)
T cd06639          92 DKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNR---IIHRDVKGNNILLTTEGGVK  168 (291)
T ss_pred             cccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEE
Confidence                                                   236788999999999998   99999999999999999999


Q ss_pred             EcccccccccccCCCCCccCCCCccccccccchhhhcCC-----CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHH
Q 039228          176 IGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-----EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLH  250 (356)
Q Consensus       176 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~  250 (356)
                      |+|||++........    ......++..|+|||++...     .++.++|||||||++|+|++|+.||......    .
T Consensus       169 l~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~----~  240 (291)
T cd06639         169 LVDFGVSAQLTSTRL----RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPV----K  240 (291)
T ss_pred             Eeecccchhcccccc----cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHH----H
Confidence            999999876532211    12234578899999987543     3678999999999999999999998643211    1


Q ss_pred             HHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          251 NFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ....... ...     +.+.                    ........+.+++.+||+.+|++||++.++++.
T Consensus       241 ~~~~~~~-~~~-----~~~~--------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         241 TLFKIPR-NPP-----PTLL--------------------HPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             HHHHHhc-CCC-----CCCC--------------------cccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            1100000 000     0000                    001223357899999999999999999999863

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=2.4e-33  Score=259.05  Aligned_cols=244  Identities=23%  Similarity=0.250  Sum_probs=168.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRFI-------------  135 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~-------------  135 (356)
                      .++|++.+.||.|+||.||+|.+..+++.||+|.+.....  .....+.+|+.+++.++||||++++             
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            5789999999999999999999999999999999864422  2234577899999999999999862             


Q ss_pred             --------------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          136 --------------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       136 --------------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                      .++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||++.
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~  163 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENH---ILHRDIKAANILIDNQGILKIADFGLAR  163 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECcCccch
Confidence                                            36778999999999999   9999999999999999999999999997


Q ss_pred             ccccCCCC-------CccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH
Q 039228          184 FRQEVSNP-------TQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       184 ~~~~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      ........       .........+++.|+|||.+.+. .++.++|||||||++|+|++|++||....... ........
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~-~~~~~~~~  242 (311)
T cd07866         164 PYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDID-QLHLIFKL  242 (311)
T ss_pred             hccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHH
Confidence            65432211       11122334668889999987654 57899999999999999999999996432211 11111111


Q ss_pred             hCCCchHHHhhhhhccccc--cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          256 AFPNRVMDIVNLVLLNDNK--VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ........+.+........  ......+.....    ........+.+++.+||+.||.+|||+.+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         243 CGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEE----RFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             hCCCChhhchhhhhcccccccccCCCCCccHHH----HcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            1000000000000000000  000000000000    01122356789999999999999999999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.8e-33  Score=252.55  Aligned_cols=211  Identities=19%  Similarity=0.281  Sum_probs=165.0

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|+||.||+|....+++.+|+|.+....  ....+.+.+|+.+++.++|||++++                
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            4888999999999999999999999999999987542  2345678899999999999999986                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.+++.||.|||+++   ++|+||+|+||+++.+ +.++|+|||++....... 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~-  156 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKL---ILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS-  156 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEEccCCCceecCCCc-
Confidence                                   347789999999999999   9999999999999854 568999999998654321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......++..|+|||.+.+..++.++||||||+++|+|++|..||.....     ........        .....
T Consensus       157 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~-----~~~~~~~~--------~~~~~  219 (256)
T cd08220         157 ----KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANL-----PALVLKIM--------SGTFA  219 (256)
T ss_pred             ----cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCch-----HHHHHHHH--------hcCCC
Confidence                12235678899999999988889999999999999999999999864211     11111100        00000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       ..                  .......+.+++.+||+.+|++|||+.+++..
T Consensus       220 -~~------------------~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         220 -PI------------------SDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             -CC------------------CCCcCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence             00                  00233457899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.6e-34  Score=258.76  Aligned_cols=232  Identities=22%  Similarity=0.333  Sum_probs=186.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHh--hcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALK--NICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~--~l~h~niv~l---------------  134 (356)
                      ....+.+.||+|.||+||+|.|.  |+.||||+|..   .+...+.+|.++.+  .|+|+||+.|               
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wr--Ge~VAVKiF~s---rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWR--GEDVAVKIFSS---RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             heeEEEEEecCccccceeecccc--CCceEEEEecc---cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            45778899999999999999998  88999999973   33466778887776  4799999998               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhh-----cCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 -------------------------ISIAIDVASALDYLHH-----HCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~-----~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                               +.++..++.||++||.     +|++.|.|||||+.|||+..++.+-|+|+|+|..
T Consensus       286 LvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~  365 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  365 (513)
T ss_pred             EeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEE
Confidence                                     5688899999999995     4667799999999999999999999999999987


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCC----C--CCccchHhHHHHHHHHHcC----------CCCCCccccCCcc
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSE----V--STNGDAYNYGILLLEMVTR----------RKPIDFMFEGDLN  248 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~--~~~sDiwSlG~~l~elltg----------~~Pf~~~~~~~~~  248 (356)
                      .....+.-....+..+||..|||||++...-    +  -..+||||||.++||+.-.          ++||......+.+
T Consensus       366 h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs  445 (513)
T KOG2052|consen  366 HDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPS  445 (513)
T ss_pred             ecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCC
Confidence            7666555556677789999999999986432    1  1457999999999999752          5788877777777


Q ss_pred             HHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          249 LHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      +.++..-....++...++..+..+                     +++..+.++|..||..||..|-|+-.+-+.|.++.
T Consensus       446 ~eeMrkVVCv~~~RP~ipnrW~s~---------------------~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~  504 (513)
T KOG2052|consen  446 FEEMRKVVCVQKLRPNIPNRWKSD---------------------PALRVMAKLMKECWYANPAARLTALRIKKTLAKLS  504 (513)
T ss_pred             HHHHhcceeecccCCCCCcccccC---------------------HHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHh
Confidence            766654433333333333333222                     67888999999999999999999999999998886


Q ss_pred             h
Q 039228          329 N  329 (356)
Q Consensus       329 ~  329 (356)
                      +
T Consensus       505 ~  505 (513)
T KOG2052|consen  505 N  505 (513)
T ss_pred             c
Confidence            5

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.7e-33  Score=260.38  Aligned_cols=239  Identities=23%  Similarity=0.263  Sum_probs=167.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.....  .....+.+|+.++++++|+||+++              
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            5679999999999999999999999999999999874432  223356789999999999999976              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   ++||||||+||+++.++.++|+|||++.......
T Consensus        86 v~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~  162 (309)
T cd07845          86 VMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPA  162 (309)
T ss_pred             EEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEECccceeeecCCcc
Confidence                                     347889999999999999   9999999999999999999999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH---h
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI---V  265 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~---~  265 (356)
                      .    ......++..|+|||.+.+ ..++.++|||||||++|+|++|.+||.....  .................+   +
T Consensus       163 ~----~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~  236 (309)
T cd07845         163 K----PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSE--IEQLDLIIQLLGTPNESIWPGF  236 (309)
T ss_pred             C----CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHhcCCCChhhchhh
Confidence            1    1122344778999999865 4578999999999999999999999974321  111111111111000000   0


Q ss_pred             hh-hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          266 NL-VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       266 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .. ................ .    .........+.+++.+||+.||++|||+.+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         237 SDLPLVGKFTLPKQPYNNL-K----HKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             hcccccccccccCCCCCch-H----HhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            00 0000000000000000 0    0001124456789999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=1e-33  Score=260.06  Aligned_cols=216  Identities=20%  Similarity=0.214  Sum_probs=169.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|.+.+.||+|+||.||+|....++..||+|.+........+.+.+|+.+++.++|||++++                
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence            3579999999999999999999988889999999876555556778999999999999999987                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    .
T Consensus        98 ~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~g---i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~----~  170 (293)
T cd06647          98 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ----S  170 (293)
T ss_pred             CCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---EeeccCCHHHEEEcCCCCEEEccCcceecccccc----c
Confidence                                347789999999999999   9999999999999999999999999987543222    1


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ......+++.|++||.+.+..++.++|+||||+++|++++|+.||........ ....   .....      +.+.    
T Consensus       171 ~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~-~~~~---~~~~~------~~~~----  236 (293)
T cd06647         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA-LYLI---ATNGT------PELQ----  236 (293)
T ss_pred             ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh-eeeh---hcCCC------CCCC----
Confidence            22234578889999999888899999999999999999999999964321110 0000   00000      0000    


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                      ........+.+++.+||..+|++||++.+++.+
T Consensus       237 ----------------~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         237 ----------------NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             ----------------CccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                            001233457889999999999999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.4e-33  Score=261.73  Aligned_cols=251  Identities=20%  Similarity=0.204  Sum_probs=174.0

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||.|+||.||+|....++..||+|.+....  ....+.+..|+.+++.++||||+++                
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4888999999999999999999889999999987543  3445678999999999999999887                


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||++.......
T Consensus        81 lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~g---i~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~  157 (330)
T cd07834          81 IVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSAN---VIHRDLKPSNILVNSNCDLKICDFGLARGVDPDE  157 (330)
T ss_pred             EEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccCceEeecccc
Confidence                                     237788999999999999   9999999999999999999999999998654432


Q ss_pred             CCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .. ........++..|+|||++.+. .++.++|+||||+++|+|++|.+||......  ...............+.....
T Consensus       158 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~~~~  234 (330)
T cd07834         158 DE-KGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYI--DQLNLIVEVLGTPSEEDLKFI  234 (330)
T ss_pred             cc-cccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHH--HHHHHHHHhcCCCChhHhhhc
Confidence            11 1122335678899999999887 7899999999999999999999999754321  111111111100000000000


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH--HHHhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD--LQSVNN  329 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~--L~~i~~  329 (356)
                      ..............................+.+++.+||+.+|++||++.+++..  ++.+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         235 TSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             cccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence            0000000000000000000000011234567899999999999999999999974  555543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.5e-33  Score=260.55  Aligned_cols=211  Identities=24%  Similarity=0.263  Sum_probs=164.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ...|.+.+.||+|+||.||+|....+++.||+|.+.....   ...+.+.+|+.+++.++||||+++             
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence            4568889999999999999999988899999999864322   233568899999999999999876             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++......  
T Consensus        94 ~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~---i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~--  168 (307)
T cd06607          94 MEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHE---RIHRDIKAGNILLTEPGTVKLADFGSASLVSPA--  168 (307)
T ss_pred             HHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEECCCCCEEEeecCcceecCCC--
Confidence                                    347789999999999999   999999999999999999999999998754321  


Q ss_pred             CCccCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                            ....++..|+|||++.   ...++.++||||||+++|||++|..||......     .....        +...
T Consensus       169 ------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~-----~~~~~--------~~~~  229 (307)
T cd06607         169 ------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-----SALYH--------IAQN  229 (307)
T ss_pred             ------CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHH-----HHHHH--------HhcC
Confidence                  2345678899999874   356888999999999999999999998632110     00000        0000


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      . .....                 .......+.+++.+||+.+|++||++.+|+..
T Consensus       230 ~-~~~~~-----------------~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  267 (307)
T cd06607         230 D-SPTLS-----------------SNDWSDYFRNFVDSCLQKIPQDRPSSEELLKH  267 (307)
T ss_pred             C-CCCCC-----------------chhhCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            0 00000                 01234567899999999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.8e-34  Score=258.73  Aligned_cols=202  Identities=18%  Similarity=0.229  Sum_probs=152.9

Q ss_pred             ccceecCceEEEEEEECCCCe-------EEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRA-------VVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~-------~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +.||+|+||.||+|.....+.       .||+|.+........+.+..|+.+++.++|||++++                
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            368999999999999865443       488888865555555678899999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc--------eEEcccccccc
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF--------AHIGDFELARF  184 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~--------~kl~Dfg~a~~  184 (356)
                                            +.++.||+.||.|||+.+   |+||||||+||+++.++.        ++++|||++..
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~  157 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKG---LTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISIT  157 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEEEecccccccCCCceEEecccccccc
Confidence                                  447889999999999999   999999999999987665        68999998864


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCC-CCCCccccCCccHHHHHHHhCCCchH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRR-KPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~-~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ...        .....++..|+|||++.+ ..++.++||||||+++|+|++|. .||......  ....           
T Consensus       158 ~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~--~~~~-----------  216 (258)
T cd05078         158 VLP--------KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQ--KKLQ-----------  216 (258)
T ss_pred             cCC--------chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHH--HHHH-----------
Confidence            321        123456788999999976 45789999999999999999985 555421110  0000           


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                       ......  ..+                  ......+.+++.+||+.||++|||++++++.|
T Consensus       217 -~~~~~~--~~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         217 -FYEDRH--QLP------------------APKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             -HHHccc--cCC------------------CCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence             000000  000                  01123578999999999999999999999987

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-34  Score=270.87  Aligned_cols=218  Identities=21%  Similarity=0.366  Sum_probs=177.1

Q ss_pred             CCccccceecCceEEEEEEECC----CCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ....+.||.|.||.||+|++..    .+-.||||..+... .+..+.|+.|.-+|++++||||+++              
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmE  470 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVME  470 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEe
Confidence            4456789999999999999743    24569999988654 3456789999999999999999998              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             .-++.||+.||+|||+..   +|||||...|||+.....+||+|||+++.+....-.
T Consensus       471 L~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkr---fVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yY  547 (974)
T KOG4257|consen  471 LAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKR---FVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYY  547 (974)
T ss_pred             cccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhc---hhhhhhhhhheeecCcceeeecccchhhhccccchh
Confidence                                   337889999999999998   999999999999999999999999999988654422


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         ......-..-|||||.+....++.+||||-|||.+||++. |..||.+....+....              +.   .
T Consensus       548 ---kaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~--------------iE---n  607 (974)
T KOG4257|consen  548 ---KASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGH--------------IE---N  607 (974)
T ss_pred             ---hccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccceEEE--------------ec---C
Confidence               2223344667999999999999999999999999999987 9999986544332110              00   0


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                                     -..+.-+++|+..|..|+.+||.++|.+||.+.++...|..+..
T Consensus       608 ---------------GeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  608 ---------------GERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             ---------------CCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence                           01122344899999999999999999999999999999999875

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=9.9e-34  Score=255.88  Aligned_cols=216  Identities=19%  Similarity=0.268  Sum_probs=163.2

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc------cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ------GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      +|++.+.||.|+||.||+|... +++.+|+|.+.....      .....+.+|+.+++.++|+||+++            
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l   79 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTN-QGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISI   79 (265)
T ss_pred             CccccceEeccCCeEEEEEEEc-CCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEE
Confidence            4788899999999999999874 678999999864321      123468889999999999999886            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||+|||+.+   |+|+||+|+||+++.++.++|+|||++.......
T Consensus        80 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  156 (265)
T cd06631          80 FMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVG  156 (265)
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHhEEECCCCeEEeccchhhHhhhhcc
Confidence                                     347789999999999999   9999999999999999999999999987653211


Q ss_pred             C--CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          190 N--PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       190 ~--~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .  ..........++..|+|||++.+..++.++|+||||+++|+|++|..||....... ........  ...     .+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~-~~~~~~~~--~~~-----~~  228 (265)
T cd06631         157 LHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLA-AMFYIGAH--RGL-----MP  228 (265)
T ss_pred             ccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHH-HHHHhhhc--cCC-----CC
Confidence            1  11122234567889999999998889999999999999999999999996432110 00000000  000     00


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+.                      ......+.+++.+||+.+|++||++.+++.
T Consensus       229 ~~~----------------------~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         229 RLP----------------------DSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCC----------------------CCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            000                      123345789999999999999999999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-35  Score=295.05  Aligned_cols=221  Identities=24%  Similarity=0.259  Sum_probs=172.8

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHHHH----------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRFIS----------  136 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~----------  136 (356)
                      ..+-++.-..+||.|.||.||.|.+.++|...|+|-+....  ....+.+.+|..++..++|||+|++++          
T Consensus      1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~I 1311 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYI 1311 (1509)
T ss_pred             cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHH
Confidence            34556788889999999999999999999999999886432  344567889999999999999999821          


Q ss_pred             ---------------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          137 ---------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       137 ---------------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                                 +..|++.|++|||++|   ||||||||.||+++.+|.+|++|||.|..+....
T Consensus      1312 FMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~g---IVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~ 1388 (1509)
T KOG4645|consen 1312 FMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHG---IVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNA 1388 (1509)
T ss_pred             HHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcC---ceecCCCccceeeecCCcEEeecccceeEecCch
Confidence                                       4568999999999999   9999999999999999999999999998775543


Q ss_pred             CCCccCCCCccccccccchhhhcCC---CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS---EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...........||+.|||||++.+.   ....+.||||+||++.||+||+.||.....+....-.......         
T Consensus      1389 ~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~--------- 1459 (1509)
T KOG4645|consen 1389 QTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHK--------- 1459 (1509)
T ss_pred             hcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCC---------
Confidence            2223344568899999999999763   3567889999999999999999999764333211111111111         


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                            ++.+.....+-.+++..||..||..|+++.||++.
T Consensus      1460 ----------------------Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~ 1494 (1509)
T KOG4645|consen 1460 ----------------------PQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEH 1494 (1509)
T ss_pred             ----------------------CCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHh
Confidence                                  11222334455789999999999999999887764

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.3e-33  Score=264.41  Aligned_cols=241  Identities=20%  Similarity=0.230  Sum_probs=170.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++..+|+|.+...  .......+.+|+.+++++ +||||+++             
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            56799999999999999999999988999999988532  223345677899999999 99999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++........
T Consensus        86 lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~  162 (337)
T cd07852          86 LVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGN---VIHRDLKPSNILLNSDCRVKLADFGLARSLSELEE  162 (337)
T ss_pred             EEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCcEEEeeccchhccccccc
Confidence                                    237789999999999999   99999999999999999999999999986543322


Q ss_pred             C-CccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CC-chHHH-
Q 039228          191 P-TQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PN-RVMDI-  264 (356)
Q Consensus       191 ~-~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~-~~~~~-  264 (356)
                      . .........++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||....... .........-  +. ....+ 
T Consensus       163 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  241 (337)
T cd07852         163 NPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLN-QLEKIIEVIGPPSAEDIESIK  241 (337)
T ss_pred             cccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCHHHHHHHH
Confidence            1 1122334568899999998754 457889999999999999999999996432211 1111111100  00 00000 


Q ss_pred             ---hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          265 ---VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       265 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                         .+..+.........    ..    ..........+.+++.+||+.||++|||+.++++.
T Consensus       242 ~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         242 SPFAATMLDSLPSRPRK----PL----DELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             hhhHHHhhhhccccccc----ch----hhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence               00000000000000    00    00011235578899999999999999999999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.5e-33  Score=254.19  Aligned_cols=219  Identities=21%  Similarity=0.298  Sum_probs=163.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc----------cchHHHHHHHHHHhhcCCCChHHH--------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ----------GASKSFMAECKALKNICHRNLVRF--------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----------~~~~~~~~E~~~l~~l~h~niv~l--------  134 (356)
                      +|.+.+.||.|+||.||+|....+++.||+|.+.....          ...+.+..|+.+++.++|||++++        
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            47788999999999999999988899999998863211          112457789999999999999886        


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                   ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++...
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~~~nil~~~~~~~~l~d~~~~~~~  158 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKG---ILHRDLKADNLLVDADGICKISDFGISKKS  158 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCC---eeecCCChhhEEEcCCCeEEEeeccccccc
Confidence                                         336789999999999998   999999999999999999999999999754


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcCCC--CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSE--VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .....  ........++..|+|||.+....  ++.++|+||||+++|++++|..||....    ....... ........
T Consensus       159 ~~~~~--~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~----~~~~~~~-~~~~~~~~  231 (272)
T cd06629         159 DDIYD--NDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE----AIAAMFK-LGNKRSAP  231 (272)
T ss_pred             ccccc--ccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc----hHHHHHH-hhccccCC
Confidence            32211  11223356788999999987654  7899999999999999999999985321    1111110 00000000


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .+....                      ....+..+.+++.+||..+|++||++.+|++.
T Consensus       232 ~~~~~~----------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         232 PIPPDV----------------------SMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             cCCccc----------------------cccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            000000                      01234567899999999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=3.5e-33  Score=254.34  Aligned_cols=236  Identities=17%  Similarity=0.163  Sum_probs=164.4

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcC-CCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNIC-HRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~l-----------------  134 (356)
                      |++.+.||+|+||.||+|....++..||+|.++.... ........|+.++.++. |+|++++                 
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            6778899999999999999998899999999875422 22234557888898885 9999987                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   ++||||+|+||+++. +.+||+|||++........  
T Consensus        81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~--  154 (282)
T cd07831          81 LMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNG---IFHRDIKPENILIKD-DILKLADFGSCRGIYSKPP--  154 (282)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEcC-CCeEEEecccccccccCCC--
Confidence                                  447889999999999999   999999999999999 9999999999976533221  


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         .....++..|+|||++.. ..++.++|||||||++|||++|..||.....  .................+. ..+..
T Consensus       155 ---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~  228 (282)
T cd07831         155 ---YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNE--LDQIAKIHDVLGTPDAEVL-KKFRK  228 (282)
T ss_pred             ---cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCH--HHHHHHHHHHcCCCCHHHH-Hhhcc
Confidence               122456889999997654 5578899999999999999999999964322  1111111111111111110 00000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .... ....+..............+..+.+++.+||+.+|++||++.++++
T Consensus       229 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         229 SRHM-NYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cccc-cccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            0000 0000000000011111244668899999999999999999999986

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.1e-33  Score=261.34  Aligned_cols=222  Identities=20%  Similarity=0.161  Sum_probs=167.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||++.+..+++.||+|.+.....   .....+.+|+.+++.++||||+++              
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            468999999999999999999999999999999875432   234567889999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   ++||||||+||+++.++.++|+|||+++........
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~  157 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTT  157 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHEEECCCCCEEEeeCCCccccCcCccc
Confidence                                   346789999999999998   999999999999999999999999998742111000


Q ss_pred             -----------CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          192 -----------TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       192 -----------~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                                 .........++..|+|||++.+..++.++|+||||+++|||++|..||.....     .......    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~-----~~~~~~~----  228 (305)
T cd05609         158 NLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTP-----EELFGQV----  228 (305)
T ss_pred             cccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHH----
Confidence                       00111234568889999999888899999999999999999999999863211     1111110    


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                          ...... ..                ......+..+.+++.+||+.||++||++.++.+.|+.
T Consensus       229 ----~~~~~~-~~----------------~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         229 ----ISDDIE-WP----------------EGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             ----HhcccC-CC----------------CccccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence                000000 00                0000233457899999999999999998777777765

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=2.1e-33  Score=252.71  Aligned_cols=211  Identities=22%  Similarity=0.232  Sum_probs=165.7

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      +|++.+.||.|+||.||+|.+..++..||+|.+....   ....+.+.+|+.++++++||||+++               
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            5889999999999999999999889999999997542   2345678999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+++.||.|||+.+   ++|+||+|+||++++++.++|+|||++.......   
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~---i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~---  154 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKG---IIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT---  154 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEEcCCCCEEEeecccccccCCCc---
Confidence                                  347789999999999998   9999999999999999999999999987553321   


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                        ......++..|+|||++.+..++.++|+||||+++|+|++|..||......  ........ .        .. ....
T Consensus       155 --~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~-~--------~~-~~~~  220 (258)
T cd05578         155 --LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT--IRDQIRAK-Q--------ET-ADVL  220 (258)
T ss_pred             --cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc--HHHHHHHH-h--------cc-cccc
Confidence              223355788899999998888999999999999999999999999743321  01111100 0        00 0000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh--HHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV--PNAV  321 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~--~~vl  321 (356)
                                        .+...+..+.+++.+||+.||.+||++  ++++
T Consensus       221 ------------------~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         221 ------------------YPATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             ------------------CcccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence                              011233567899999999999999999  5544

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=7.2e-33  Score=254.66  Aligned_cols=238  Identities=19%  Similarity=0.172  Sum_probs=165.9

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-----chHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-----ASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      +|++.+.||.|+||.||+|.+..+++.||+|.+......     ....+..|+.+++.++|+||+++             
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            478889999999999999999988999999999754322     33557789999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+++   |+|+||+|+||+++.++.++|+|||++........
T Consensus        81 ~e~~~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  157 (298)
T cd07841          81 FEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR  157 (298)
T ss_pred             EcccCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecCCChhhEEEcCCCCEEEccceeeeeccCCCc
Confidence                                    347889999999999999   99999999999999999999999999976543221


Q ss_pred             CCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          ......++..|+|||.+.+ ..++.++|+|||||++|+|++|.+||...... ..+..............+.+...
T Consensus       158 ----~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  232 (298)
T cd07841         158 ----KMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDI-DQLGKIFEALGTPTEENWPGVTS  232 (298)
T ss_pred             ----cccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccH-HHHHHHHHHcCCCchhhhhhccc
Confidence                1122345778999998854 45788999999999999999998887642211 11111111110000000000000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ............    .............+.+++.+||+.+|++|||+.+|+.
T Consensus       233 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         233 LPDYVEFKPFPP----TPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             ccccccccccCC----cchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            000000000000    0000001133457889999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2e-33  Score=252.66  Aligned_cols=202  Identities=20%  Similarity=0.342  Sum_probs=155.7

Q ss_pred             ccceecCceEEEEEEECCCC----------eEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNR----------AVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~----------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      +.||+|+||.||+|.+..++          ..+++|.+...... ...+.+|+.+++.++||||+++             
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~   79 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVE   79 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEE
Confidence            36899999999999998765          45888887644333 5788899999999999999986             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-------ceEEccccccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-------FAHIGDFELAR  183 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-------~~kl~Dfg~a~  183 (356)
                                              +.++.||+.||.|||+.+   |+||||||+||+++.++       .++|+|||++.
T Consensus        80 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~  156 (259)
T cd05037          80 EYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKK---LVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPI  156 (259)
T ss_pred             EcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCC---eecccCccceEEEecCccccCCceeEEeCCCCccc
Confidence                                    347789999999999998   99999999999999887       79999999997


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCC--CCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGS--EVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ....        .....++..|+|||++.+.  .++.++||||||+++|+|++ |..||......  ....+..      
T Consensus       157 ~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~--~~~~~~~------  220 (259)
T cd05037         157 TVLS--------REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSS--EKERFYQ------  220 (259)
T ss_pred             cccc--------ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCch--hHHHHHh------
Confidence            5432        1123456789999998876  78899999999999999999 57777543211  1111100      


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                           .......                     .....+.+++.+||..+|.+|||+.+|++.|.
T Consensus       221 -----~~~~~~~---------------------~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         221 -----DQHRLPM---------------------PDCAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             -----cCCCCCC---------------------CCchHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                 0000000                     00135789999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=249.50  Aligned_cols=216  Identities=16%  Similarity=0.245  Sum_probs=165.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC----cc----chHHHHHHHHHHhhcC-CCChHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC----QG----ASKSFMAECKALKNIC-HRNLVRF-------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~----~~~~~~~E~~~l~~l~-h~niv~l-------  134 (356)
                      -+.|.-.+.||+|..++|-++..+.++..+|+|++....    .+    ..+.-.+|+.+|+++. ||+|+++       
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            345777889999999999999999999999999986321    11    1234567999999975 9999987       


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ..|..++..|+.|||...   ||||||||+|||+|++.+++|+|||++..
T Consensus        96 sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~---IVHRDLKpENILlddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARN---IVHRDLKPENILLDDNMNIKISDFGFACQ  172 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhh---hhhcccChhheeeccccceEEeccceeec
Confidence                                          348899999999999998   99999999999999999999999999987


Q ss_pred             cccCCCCCccCCCCccccccccchhhhc------CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDL------GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      +..+.     .....+||++|+|||.+.      ...|+..+|+|++||++|.++.|.+||-..  ...-          
T Consensus       173 l~~Ge-----kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR--kQml----------  235 (411)
T KOG0599|consen  173 LEPGE-----KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR--KQML----------  235 (411)
T ss_pred             cCCch-----hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH--HHHH----------
Confidence            75533     234588999999999874      346889999999999999999999998421  0000          


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                           ++--.+.+.+.        .-...|.    +......+|+.+||+.||.+|.|++++++.
T Consensus       236 -----MLR~ImeGkyq--------F~speWa----dis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  236 -----MLRMIMEGKYQ--------FRSPEWA----DISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             -----HHHHHHhcccc--------cCCcchh----hccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence                 01111111111        0011111    334456899999999999999999999863

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=2.5e-33  Score=253.93  Aligned_cols=214  Identities=21%  Similarity=0.245  Sum_probs=151.9

Q ss_pred             cceecCceEEEEEEECC--CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------------
Q 039228           79 LIGVGSFDAVYQGVFDL--NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------------  134 (356)
                      .||+|+||.||+|....  ....+|+|.+..... .....+.+|+.+++.++||||+++                     
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            68999999999997543  346788988764332 234568899999999999999986                     


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.||+.||+|||+.+   |+||||||+||+++.++.+||+|||++........  .
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~--~  156 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQAD---FIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDY--Y  156 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcC---EecccccHhheEecCCCcEEEeccccccccccchh--e
Confidence                                 246789999999999999   99999999999999999999999999864322111  1


Q ss_pred             cCCCCccccccccchhhhcC-------CCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          194 SSSNGVRRTIGYTALDYDLG-------SEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      .......++..|+|||++..       ..++.++|||||||++|||++ |..||....... .+........    ..+.
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~-~~~~~~~~~~----~~~~  231 (269)
T cd05042         157 ITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQ-VLKQVVREQD----IKLP  231 (269)
T ss_pred             eccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHH-HHHHHhhccC----ccCC
Confidence            11123445678999998743       356789999999999999999 788886432111 1111111000    0000


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      .+.+                      .......+.+++..|| .||++|||+++|++.|.
T Consensus       232 ~~~~----------------------~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         232 KPQL----------------------DLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             CCcc----------------------cccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            0000                      0123335567888898 59999999999999873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=5.4e-33  Score=251.90  Aligned_cols=214  Identities=17%  Similarity=0.247  Sum_probs=150.9

Q ss_pred             cceecCceEEEEEEECCC--CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------------
Q 039228           79 LIGVGSFDAVYQGVFDLN--RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~~--~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------------  134 (356)
                      .||+|+||.||+|....+  ...+++|.+.... ....+.+.+|+.+++.++||||+++                     
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            689999999999975433  3456777766443 2345678999999999999999986                     


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.||+.||.|||+.+   ++||||||+|||++.++.++|+|||++.......  ...
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~---i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~--~~~  156 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHN---FLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKED--YIE  156 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCC---eeccCCccceEEEcCCccEEecccccccccCcch--hhh
Confidence                                246778999999999998   9999999999999999999999999986422111  111


Q ss_pred             CCCCccccccccchhhhcC-------CCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          195 SSNGVRRTIGYTALDYDLG-------SEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~-------~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ......++..|+|||++..       ..++.++||||||+++|||++ |..||.....     .........+....+.+
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~  231 (268)
T cd05086         157 TEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSD-----REVLNHVIKDQQVKLFK  231 (268)
T ss_pred             cccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHhhcccccCC
Confidence            2223567889999998743       245788999999999999997 5778753221     11111111111111111


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      +.+..                      .....+.+++..|| .+|++||++++|++.|.
T Consensus       232 ~~~~~----------------------~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         232 PQLEL----------------------PYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CccCC----------------------CCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            11111                      11224677889999 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-33  Score=255.80  Aligned_cols=234  Identities=25%  Similarity=0.269  Sum_probs=164.9

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      |++.+.||.|++|.||+|.+..++..||+|++....  ......+.+|+.+++.++|||++++                 
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            677889999999999999999899999999987543  2234568889999999999999987                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           +.++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~---~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~----  153 (283)
T cd07835          81 DLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHR---VLHRDLKPQNLLIDREGALKLADFGLARAFGVPV----  153 (283)
T ss_pred             CcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCcEEEeecccccccCCCc----
Confidence                                 347789999999999998   9999999999999999999999999997543221    


Q ss_pred             cCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CCc-hHHHh--hhh
Q 039228          194 SSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PNR-VMDIV--NLV  268 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~  268 (356)
                      .......++..|+|||++.+. .++.++|+||||+++|+|++|+.||...... ..+........ +.. ....+  .+.
T Consensus       154 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd07835         154 RTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEI-DQLFRIFRTLGTPDEDVWPGVTSLPD  232 (283)
T ss_pred             cccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCChHHhhhhhhchh
Confidence            111223457889999987654 4688999999999999999999999643211 11111111111 110 00000  000


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .......       ................+.+++.+||+.+|.+|||+.++++
T Consensus       233 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         233 YKPTFPK-------WARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             hhhhccc-------ccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            0000000       0000000001123346789999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=1.6e-33  Score=255.91  Aligned_cols=217  Identities=18%  Similarity=0.265  Sum_probs=166.1

Q ss_pred             CCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ++|++...||.|+||.||+|+.+.     +.+.|++|.+...... ..+.+.+|+.++++++|+||+++           
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            568899999999999999999753     3468999988654333 45678999999999999999987           


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                         ..++.|++.||+|||+.+   |+||||||+||+++.++.++|+||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~~~  161 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNAR---FVHRDLAARNCLVSSQREVKVSLL  161 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcC---cccCcCccceEEEeCCCcEEEccc
Confidence                                               236789999999999999   999999999999999999999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCC
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      |++.......   ........++..|+|||.+.+..++.++||||||+++|+|++ |..||......  ........   
T Consensus       162 ~~~~~~~~~~---~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~--~~~~~~~~---  233 (275)
T cd05046         162 SLSKDVYNSE---YYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDE--EVLNRLQA---  233 (275)
T ss_pred             ccccccCccc---ccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchH--HHHHHHHc---
Confidence            9987442211   112233456778999999988888999999999999999998 88898632211  11111000   


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      ..        +....                  ...++..+.+++.+||+.+|++|||+.++++.|.
T Consensus       234 ~~--------~~~~~------------------~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         234 GK--------LELPV------------------PEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             CC--------cCCCC------------------CCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            00        00000                  0123446789999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.8e-33  Score=253.53  Aligned_cols=216  Identities=21%  Similarity=0.272  Sum_probs=171.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++.+.||.|++|.||+|.+..+++.|++|++..... .....+.+|+..+.+++|+||+++                
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            468899999999999999999999999999999876543 345778999999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                           +.++.+++.||.|||+ .+   ++|+||+|+||+++.++.++|+|||++........  
T Consensus        81 ~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~---~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~--  155 (264)
T cd06623          81 MDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRH---IIHRDIKPSNLLINSKGEVKIADFGISKVLENTLD--  155 (264)
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCC---CccCCCCHHHEEECCCCCEEEccCccceecccCCC--
Confidence                                 4588899999999999 98   99999999999999999999999999976543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                        ......++..|+|||.+.+..++.++|+||||+++|+|++|..||.....  ..........        ........
T Consensus       156 --~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~--~~~~~~~~~~--------~~~~~~~~  223 (264)
T cd06623         156 --QCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ--PSFFELMQAI--------CDGPPPSL  223 (264)
T ss_pred             --cccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc--cCHHHHHHHH--------hcCCCCCC
Confidence              11235678899999999988899999999999999999999999975432  1111111111        10000000


Q ss_pred             cccccccccchhhhhchhhHHH-HHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLE-CLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                         ... .+..+.+++.+||+.+|++||++.++++.
T Consensus       224 -------------------~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         224 -------------------PAEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             -------------------CcccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence                               012 34568899999999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=4.6e-33  Score=253.93  Aligned_cols=235  Identities=22%  Similarity=0.268  Sum_probs=168.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      +|++.+.||.|++|.||+|++..++..||+|.+..... .....+.+|+.+++.++||||+++                 
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            58899999999999999999999999999999875533 234567789999999999999987                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   ++|+||+|+||++++++.++|+|||++.......   
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~---  154 (284)
T cd07836          81 DKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENR---VLHRDLKPQNLLINKRGELKLADFGLARAFGIPV---  154 (284)
T ss_pred             CccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEECCCCcEEEeecchhhhhcCCc---
Confidence                                  347889999999999999   9999999999999999999999999997543221   


Q ss_pred             ccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC---chHHHhhh-
Q 039228          193 QSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN---RVMDIVNL-  267 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-  267 (356)
                       .......++..|++||++.+. .++.++|+||||+++|+|++|+.||....... ............   ....+.+. 
T Consensus       155 -~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  232 (284)
T cd07836         155 -NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNED-QLLKIFRIMGTPTESTWPGISQLP  232 (284)
T ss_pred             -cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhHHHHhcCc
Confidence             112234567889999988654 56889999999999999999999997533211 111111111100   11111100 


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+...       .+.................+.+++.+||+.||.+||++.++++
T Consensus       233 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         233 EYKPT-------FPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             hhccc-------ccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            00000       0000000001111234556789999999999999999999875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.3e-33  Score=257.41  Aligned_cols=241  Identities=23%  Similarity=0.238  Sum_probs=166.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||.|+||.||+|.+..+++.+|+|.++....  .....+.+|+.++++++||||+++              
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~l   83 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYM   83 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEE
Confidence            3579999999999999999999998899999999975432  223456789999999999999875              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......
T Consensus        84 v~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~  160 (293)
T cd07843          84 VMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLAREYGSPL  160 (293)
T ss_pred             EehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCcEEEeecCceeeccCCc
Confidence                                     457889999999999999   9999999999999999999999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC--chHHHhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN--RVMDIVN  266 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~  266 (356)
                          .......++..|+|||.+.+. .++.++|+||||+++|+|++|..||....... ............  .......
T Consensus       161 ----~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  235 (293)
T cd07843         161 ----KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEID-QLNKIFKLLGTPTEKIWPGFS  235 (293)
T ss_pred             ----cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCchHHHHHhh
Confidence                112234567889999998764 46889999999999999999999997432211 111111110000  0000000


Q ss_pred             hh-hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          267 LV-LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       267 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .. ............. .+....+..  .....+.+++.+||+.+|++|||+.|++.
T Consensus       236 ~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         236 ELPGAKKKTFTKYPYN-QLRKKFPAL--SLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             ccchhcccccccccch-hhhcccccc--CCChHHHHHHHHHhccCccccCCHHHHhc
Confidence            00 0000000000000 000000000  02446789999999999999999999985

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=1.2e-33  Score=264.35  Aligned_cols=164  Identities=21%  Similarity=0.265  Sum_probs=137.6

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+++++.+++.||+|++...   .......+..|+.++..++|+||+++              
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            4799999999999999999999999999999998642   12223457789999999999999876              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++....... 
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~---iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~-  156 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG-  156 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCHHHEEECCCCCEEEeecchheecccCC-
Confidence                                    347789999999999999   9999999999999999999999999987543221 


Q ss_pred             CCccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                        ........||+.|+|||++.     ...++.++|||||||++|||++|+.||..
T Consensus       157 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~  210 (332)
T cd05623         157 --TVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (332)
T ss_pred             --cceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCC
Confidence              11223356899999999986     34678999999999999999999999963

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=6e-33  Score=260.58  Aligned_cols=238  Identities=20%  Similarity=0.221  Sum_probs=168.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI---------------  135 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~---------------  135 (356)
                      ..+|.+.+.||.|+||.||+|....+++.||+|.+........+.+.+|+.+++.++||||++++               
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            46799999999999999999999999999999999766656667788999999999999999753               


Q ss_pred             ----------------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEcccc
Q 039228          136 ----------------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFE  180 (356)
Q Consensus       136 ----------------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg  180 (356)
                                                        .++.||+.||.|||+.+   |+||||||+||+++ .++.++|+|||
T Consensus        84 ~~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivH~dikp~Nili~~~~~~~kl~dfg  160 (342)
T cd07854          84 SLTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANVFINTEDLVLKIGDFG  160 (342)
T ss_pred             cccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCceEEECCcc
Confidence                                              36678999999999999   99999999999997 56678999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      ++..+...... ........++..|+|||.+.+ ..++.++|||||||++|+|++|+.||....... ....... ..+.
T Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~-~~~~~~~-~~~~  237 (342)
T cd07854         161 LARIVDPHYSH-KGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELE-QMQLILE-SVPV  237 (342)
T ss_pred             cceecCCcccc-ccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-hcCC
Confidence            99765332111 111223456888999998754 567889999999999999999999996432211 1111111 0110


Q ss_pred             c----hHHH---hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 R----VMDI---VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ~----~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .    ....   +...+..........        ...........+.+++.+||..||.+|||+.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         238 VREEDRNELLNVIPSFVRNDGGEPRRP--------LRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             CChHHhhhhhhhhhhhhhhcccccCCC--------HHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence            0    0000   000000000000000        00000123346789999999999999999999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=9.1e-34  Score=265.00  Aligned_cols=164  Identities=22%  Similarity=0.269  Sum_probs=138.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||++++..+++.||+|++...   .......+..|+.++..++|+||+++              
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4799999999999999999999999999999998642   12233457789999999999999876              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++........
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~---iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  157 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLH---YVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGT  157 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCchHHEEEcCCCCEEEEeccceeeccCCCc
Confidence                                    336789999999999999   99999999999999999999999999976533221


Q ss_pred             CCccCCCCccccccccchhhhcC-----CCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLG-----SEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         .......||+.|+|||++.+     ..++.++|||||||++|+|++|+.||..
T Consensus       158 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~  210 (331)
T cd05624         158 ---VQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             ---eeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccC
Confidence               12223568999999999875     4678899999999999999999999963

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=1.2e-33  Score=263.82  Aligned_cols=245  Identities=20%  Similarity=0.219  Sum_probs=170.2

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      +...+++|++.+.||.|+||.||+|.+..++..||+|.+...  .....+.+..|+.+++.++||||+++          
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            345678899999999999999999999999999999988543  22334678899999999999999986          


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.|++.||.|||+.+   |+|+||+|+||+++.++.++|+|||.+..... 
T Consensus        85 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~---iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~-  160 (328)
T cd07856          85 IYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAG---VVHRDLKPSNILINENCDLKICDFGLARIQDP-  160 (328)
T ss_pred             EEEEeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEeECCCCCEEeCccccccccCC-
Confidence                                      336789999999999999   99999999999999999999999999874321 


Q ss_pred             CCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                            ......++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||......  ...............++...
T Consensus       161 ------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~  232 (328)
T cd07856         161 ------QMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHV--NQFSIITDLLGTPPDDVINT  232 (328)
T ss_pred             ------CcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHHhCCCCHHHHHh
Confidence                  1123456788999998765 56889999999999999999999999643210  11111111111001111110


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...............................+.+++.+||+.+|++||++.+++..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         233 ICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             ccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            00000000000000000000000011234578899999999999999999998765

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=2.3e-33  Score=254.10  Aligned_cols=214  Identities=23%  Similarity=0.356  Sum_probs=163.9

Q ss_pred             CCCccccceecCceEEEEEEECC-CCeEEEEEEeeccC----------ccchHHHHHHHHHHhh-cCCCChHHH------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDL-NRAVVAIKVLSIQC----------QGASKSFMAECKALKN-ICHRNLVRF------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~-~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~-l~h~niv~l------  134 (356)
                      +|++.+.||+|+||.||+|.+.. +++.+|+|.+....          ......+..|+.++.+ ++||||+++      
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            48889999999999999999987 67899999885321          2233457788887764 799999986      


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGD  178 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~D  178 (356)
                                                         +.++.+++.||.|||+ .+   ++|+||+|+||+++.++.++|+|
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~---i~H~dl~~~nil~~~~~~~~l~d  157 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKR---IVHRDLTPNNIMLGEDDKVTITD  157 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCc---eeecCCCHHHEEECCCCcEEEec
Confidence                                               3467799999999996 66   99999999999999999999999


Q ss_pred             cccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC
Q 039228          179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       179 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      ||.+.......     ......++..|++||.+.+..++.++|+||||+++|+|++|+.||...     ........   
T Consensus       158 fg~~~~~~~~~-----~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~-----~~~~~~~~---  224 (269)
T cd08528         158 FGLAKQKQPES-----KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYST-----NMLSLATK---  224 (269)
T ss_pred             ccceeeccccc-----ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCccccc-----CHHHHHHH---
Confidence            99997643321     223456788999999999888999999999999999999999998632     11111111   


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                           +.+........                  ......+.+++.+||+.||++||++.+|.++|.
T Consensus       225 -----~~~~~~~~~~~------------------~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         225 -----IVEAVYEPLPE------------------GMYSEDVTDVITSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             -----HhhccCCcCCc------------------ccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhc
Confidence                 01100000000                  012345789999999999999999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-33  Score=255.12  Aligned_cols=216  Identities=22%  Similarity=0.295  Sum_probs=165.9

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      ..+++|++.+.||.|++|.||+|.+..+++.+++|++..... ..+.+.+|+.+++++ +|+||+++             
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            356889999999999999999999988889999999875533 346788999999998 69998764             


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                        ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~---i~H~~l~p~ni~~~~~~~~~l~d~~  158 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENK---VIHRDIKGQNILLTKNAEVKLVDFG  158 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEEccCCeEEECCCc
Confidence                                              237778999999999999   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcC-----CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-----SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      ++.......    .......++..|+|||++..     ..++.++||||||+++|+|++|..||...... ........ 
T Consensus       159 ~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~~~~~-  232 (275)
T cd06608         159 VSAQLDSTL----GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPM-RALFKIPR-  232 (275)
T ss_pred             cceecccch----hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchH-HHHHHhhc-
Confidence            987543221    12233567889999998753     34678899999999999999999999632111 01111000 


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                         ..     .+.+                    .........+.+++.+||..||++|||+.+|++
T Consensus       233 ---~~-----~~~~--------------------~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         233 ---NP-----PPTL--------------------KSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             ---cC-----CCCC--------------------CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence               00     0000                    000123456789999999999999999999986

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-34  Score=266.61  Aligned_cols=155  Identities=27%  Similarity=0.299  Sum_probs=127.4

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhc---CCCChHHH-------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNI---CHRNLVRF-------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l---~h~niv~l-------------------  134 (356)
                      ||+|+||.||+|++..+++.||+|++.....   .....+..|..++...   +||||+++                   
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            6999999999999999999999999864321   2233455677777665   69999876                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.||+.||+|||+.+   |+||||||+|||++.++.++|+|||+++......    ...
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~---ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~----~~~  153 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYD---IVYRDLKPENILLDATGHIALCDFGLSKANLTDN----KTT  153 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeEECCCCCEEEecCCcCcCCCCCC----CCc
Confidence                              347889999999999999   9999999999999999999999999987532211    122


Q ss_pred             CCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          197 NGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      ....||..|+|||++.+. .++.++|||||||++|+|++|..||..
T Consensus       154 ~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~  199 (330)
T cd05586         154 NTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYA  199 (330)
T ss_pred             cCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCC
Confidence            346789999999998754 478999999999999999999999964

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.8e-33  Score=256.03  Aligned_cols=201  Identities=20%  Similarity=0.292  Sum_probs=151.0

Q ss_pred             cceecCceEEEEEEECC------------------------CCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH
Q 039228           79 LIGVGSFDAVYQGVFDL------------------------NRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~------------------------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l  134 (356)
                      .||+|+||.||+|....                        ....||+|++..........+..|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            68999999999998532                        124689999875544445678889999999999999986


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC----
Q 039228          135 --------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL----  172 (356)
Q Consensus       135 --------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~----  172 (356)
                                                            +.++.||+.||+|||+.+   |+||||||+||+++..+    
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---iiH~dlkp~Nill~~~~~~~~  158 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKN---LVHGNVCAKNILLARLGLAEG  158 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCC---ccCCCCCcccEEEeccCcccC
Confidence                                                  458889999999999998   99999999999997543    


Q ss_pred             ---ceEEcccccccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHH-HcCCCCCCccccCCc
Q 039228          173 ---FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEM-VTRRKPIDFMFEGDL  247 (356)
Q Consensus       173 ---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~el-ltg~~Pf~~~~~~~~  247 (356)
                         .++++|||++.....        .....++..|+|||.+.+ ..++.++||||||+++||| ++|..||....... 
T Consensus       159 ~~~~~kl~d~g~~~~~~~--------~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~-  229 (274)
T cd05076         159 TSPFIKLSDPGVSFTALS--------REERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSE-  229 (274)
T ss_pred             ccceeeecCCcccccccc--------ccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHH-
Confidence               479999998753321        112346778999998865 5688999999999999998 47999986432111 


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                       ....            +....... .                   .....+.+++.+||+.+|++|||+.+|++.|
T Consensus       230 -~~~~------------~~~~~~~~-~-------------------~~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         230 -KERF------------YEKKHRLP-E-------------------PSCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             -HHHH------------HHhccCCC-C-------------------CCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence             1111            11100000 0                   1112478899999999999999999999887

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-34  Score=269.90  Aligned_cols=222  Identities=22%  Similarity=0.296  Sum_probs=177.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+...+.+.||+|.||.|++|.|...   ...||||.+...... ....|++|+.+|.+|+|+|++++            
T Consensus       109 ee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV  188 (1039)
T KOG0199|consen  109 EEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMV  188 (1039)
T ss_pred             HHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHH
Confidence            34566778999999999999999753   357999999755443 56789999999999999999987            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                .+++.||+.|+.||..++   +|||||...|+|+.....+||+|||+.+-+...
T Consensus       189 ~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskr---lvHRDLAARNlllasprtVKI~DFGLmRaLg~n  265 (1039)
T KOG0199|consen  189 FELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKR---LVHRDLAARNLLLASPRTVKICDFGLMRALGEN  265 (1039)
T ss_pred             hhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhhhheecccceeeeecccceeccCCC
Confidence                                      348899999999999999   999999999999999999999999999988766


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ...... .....-...|.|||.+....++.++|||+|||++|||+| |..||.+....              .+...+|.
T Consensus       266 ed~Yvm-~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~--------------qIL~~iD~  330 (1039)
T KOG0199|consen  266 EDMYVM-APQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGI--------------QILKNIDA  330 (1039)
T ss_pred             CcceEe-cCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHH--------------HHHHhccc
Confidence            554322 222334678999999999999999999999999999999 88998753211              12222332


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      .-                  ....+..|++.+.+++..||..+|++|||+..|.+.+-...
T Consensus       331 ~e------------------rLpRPk~csedIY~imk~cWah~paDRptFsair~~~~l~e  373 (1039)
T KOG0199|consen  331 GE------------------RLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDLVLAE  373 (1039)
T ss_pred             cc------------------cCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhHHHHh
Confidence            11                  11223379999999999999999999999999986554433

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=6.9e-33  Score=254.28  Aligned_cols=239  Identities=20%  Similarity=0.196  Sum_probs=164.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcC-CCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNIC-HRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~-h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+.....  .....+.+|+.+++.+. ||||+++              
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            468999999999999999999999999999999864422  23457888999999995 5999876              


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEccccc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFEL  181 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~  181 (356)
                                                      ..++.||+.||.|||+.+   |+||||+|+||+++. ++.++|+|||+
T Consensus        81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---i~H~dl~~~nil~~~~~~~~kl~dfg~  157 (295)
T cd07837          81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHG---VMHRDLKPQNLLVDKQKGLLKIADLGL  157 (295)
T ss_pred             EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChHHEEEecCCCeEEEeeccc
Confidence                                            336789999999999999   999999999999998 89999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      +.......    .......+++.|+|||++.+ ..++.++|+||||+++|+|++|..||....... .............
T Consensus       158 ~~~~~~~~----~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~  232 (295)
T cd07837         158 GRAFSIPV----KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQ-QLLHIFKLLGTPT  232 (295)
T ss_pred             ceecCCCc----cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHhCCCC
Confidence            87543221    11122345788999998865 457899999999999999999999996422111 1111111100000


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...+....-...........+....    .........+.+++.+||..||.+||++.+++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         233 EQVWPGVSKLRDWHEFPQWKPQDLS----RAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             hhhCcchhhccchhhcCcccchhHH----HhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            0000000000000000000000000    001134456789999999999999999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=4.2e-33  Score=255.49  Aligned_cols=207  Identities=25%  Similarity=0.230  Sum_probs=163.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||++.+..+++.||+|.+....   ....+.+.+|+.++++++||||+++              
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            46899999999999999999999889999999986432   2334678899999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++......   
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~---i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~---  154 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLD---IVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR---  154 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEeeCCCccccCCC---
Confidence                                   347789999999999999   999999999999999999999999998765322   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                          .....+++.|+|||.+.+..++.++||||||+++|+|++|..||.....     .........+.      ..+. 
T Consensus       155 ----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~------~~~~-  218 (290)
T cd05580         155 ----TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP-----IQIYEKILEGK------VRFP-  218 (290)
T ss_pred             ----CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHHHhcCC------ccCC-
Confidence                2234678899999999888889999999999999999999999864221     11110000000      0000 


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAV  321 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl  321 (356)
                                           ......+.+++.+||..||.+||     ++++++
T Consensus       219 ---------------------~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~  252 (290)
T cd05580         219 ---------------------SFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIK  252 (290)
T ss_pred             ---------------------ccCCHHHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence                                 01223567999999999999999     556655

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.7e-33  Score=261.42  Aligned_cols=241  Identities=21%  Similarity=0.215  Sum_probs=167.6

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..++..||||++....  ......+.+|+.+++.++||||+++             
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            4678999999999999999999999999999999986432  2234568899999999999999865             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++....
T Consensus        93 ~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~g---i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~  169 (343)
T cd07880          93 HDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQTD  169 (343)
T ss_pred             ceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccccccc
Confidence                                        347789999999999999   9999999999999999999999999997543


Q ss_pred             cCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ..       .....++..|++||.+.+ ..++.++|+||||+++|++++|..||...... ............ ....+.
T Consensus       170 ~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~-~~~~~~~~~~~~-~~~~~~  240 (343)
T cd07880         170 SE-------MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHL-DQLMEIMKVTGT-PSKEFV  240 (343)
T ss_pred             cC-------ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCC-CCHHHH
Confidence            21       123456888999999876 45788999999999999999999999743211 011111111000 000100


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .............................+...+.+++.+|++.||++|||+.+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~  297 (343)
T cd07880         241 QKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA  297 (343)
T ss_pred             HhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000000000000000000000000011123446789999999999999999999984

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=6.8e-33  Score=252.77  Aligned_cols=237  Identities=22%  Similarity=0.261  Sum_probs=167.1

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      |++.+.||.|+||.||+|.+..+++.+|+|.+....  ......+.+|+.+++.++|||++++                 
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            677889999999999999999889999999998653  3344678899999999999999876                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.+++.||+|||+.+   ++|+||+|+||++++++.++|+|||++........  
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~---~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~--  155 (287)
T cd07840          81 YMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNG---ILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS--  155 (287)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEEcCCCCEEEccccceeeccCCCc--
Confidence                                  347889999999999999   99999999999999999999999999986544321  


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH--hhhh-
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI--VNLV-  268 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-  268 (356)
                       .......++..|+|||.+.+ ..++.++||||||+++|+|++|+.||...... .................+  .... 
T Consensus       156 -~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  233 (287)
T cd07840         156 -ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTEL-EQLEKIFELCGSPTDENWPGVSKLP  233 (287)
T ss_pred             -ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCchhhccccccch
Confidence             11223456788999997765 45789999999999999999999999643321 111111111100000000  0000 


Q ss_pred             hccccccccccccchhhhhchhhHHH-HHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLE-CLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....... .........    ..... +...+.+++.+||..+|.+||++.++++
T Consensus       234 ~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         234 WFENLKP-KKPYKRRLR----EFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hhhhccc-cccchhHHH----HHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            0000000 000000000    01111 2567899999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=5.6e-33  Score=255.41  Aligned_cols=217  Identities=18%  Similarity=0.229  Sum_probs=162.8

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcC-CCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNIC-HRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||||.++.... .....+..|+.++.+.. ||||+++             
T Consensus        13 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v   92 (296)
T cd06618          13 DLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFIC   92 (296)
T ss_pred             CcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEE
Confidence            34679999999999999999999998899999999975432 23455677887666665 9999998             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 ------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                              ..++.+++.||.|||+ .+   |+||||+|+||+++.++.++|+|||++.......
T Consensus        93 ~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~---i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~  169 (296)
T cd06618          93 MELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHG---VIHRDVKPSNILLDASGNVKLCDFGISGRLVDSK  169 (296)
T ss_pred             eeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCC---EecCCCcHHHEEEcCCCCEEECccccchhccCCC
Confidence                                    2478899999999997 47   9999999999999999999999999987553221


Q ss_pred             CCCccCCCCccccccccchhhhcCCC----CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSE----VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                           ......++..|+|||.+.+..    ++.++||||||+++|+|++|+.||......   .. ...        .++
T Consensus       170 -----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~---~~-~~~--------~~~  232 (296)
T cd06618         170 -----AKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE---FE-VLT--------KIL  232 (296)
T ss_pred             -----cccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH---HH-HHH--------HHh
Confidence                 112234678899999987554    788999999999999999999998642111   10 000        011


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..... ...                ....+...+.+++.+||+.||++||++.+++..
T Consensus       233 ~~~~~-~~~----------------~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         233 QEEPP-SLP----------------PNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             cCCCC-CCC----------------CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            10000 000                000233467899999999999999999999865

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-32  Score=250.41  Aligned_cols=236  Identities=23%  Similarity=0.257  Sum_probs=168.2

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      |++.+.||.|++|.||+|....+++.+++|.+.....  .....+..|+.++++++|+||+++                 
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            5677899999999999999988899999999875432  234678889999999999999987                 


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||.+.......    .
T Consensus        81 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~----~  153 (283)
T cd05118          81 DTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHG---ILHRDLKPENLLINTEGVLKLADFGLARSFGSPV----R  153 (283)
T ss_pred             CCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCC---eeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc----c
Confidence                                347789999999999999   9999999999999999999999999997654322    1


Q ss_pred             CCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC---CchHHHhhhhhc
Q 039228          195 SSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP---NRVMDIVNLVLL  270 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~  270 (356)
                      ......++..|+|||.+.+. .++.++|+||||+++|+|++|+.||......+ .+.........   .....+.+....
T Consensus       154 ~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (283)
T cd05118         154 PYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEID-QLFKIFRTLGTPDPEVWPKFTSLARN  232 (283)
T ss_pred             cccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHcCCCchHhcccchhhhhh
Confidence            11224567889999998776 78899999999999999999999986432111 11111111000   000000000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....     ...-...............+.+++..||+.||.+||++.+++.
T Consensus       233 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         233 YKFS-----FPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhh-----hccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            0000     0000000001112245667899999999999999999999985

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=6.1e-33  Score=260.66  Aligned_cols=242  Identities=19%  Similarity=0.216  Sum_probs=167.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|.+...||+|++|.||+|++..+++.||+|++...  .....+.+.+|+.+++.++||||+++             
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            367899999999999999999999999999999998643  22334567789999999999999876             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++....
T Consensus        93 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~g---i~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851          93 QDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAG---IIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             ccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCCEEEcccccccccc
Confidence                                        236678999999999999   9999999999999999999999999997543


Q ss_pred             cCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ..       .....++..|+|||.+.+ ..++.++||||||+++|+|++|+.||...... ..+.... .........+.
T Consensus       170 ~~-------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~-~~~~~i~-~~~~~~~~~~~  240 (343)
T cd07851         170 DE-------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHI-DQLKRIM-NLVGTPDEELL  240 (343)
T ss_pred             cc-------ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHH-HhcCCCCHHHH
Confidence            21       223456888999998865 36788999999999999999999999642211 0111111 11110001111


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .................................+.+++.+||+.+|++|||+.+|+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         241 QKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             hhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence            1000000000000000000000000011234578899999999999999999998753

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=8.4e-33  Score=252.99  Aligned_cols=212  Identities=18%  Similarity=0.188  Sum_probs=165.1

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      |...+.||.|++|.||+|....+++.+++|.+........+.+.+|+.+++.++||||+++                   
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~  100 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEG  100 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCC
Confidence            4555789999999999999988899999999875555555678899999999999999986                   


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.+++.||+|||+.+   ++||||+|+||+++.++.++|+|||++.......    ....
T Consensus       101 ~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~----~~~~  173 (285)
T cd06648         101 GALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQG---VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEV----PRRK  173 (285)
T ss_pred             CCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChhhEEEcCCCcEEEcccccchhhccCC----cccc
Confidence                             348889999999999999   9999999999999999999999999886543221    1122


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...|+..|+|||.+.+..++.++|+||||+++|+|++|..||.....     ..........     ..+.+.       
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~-----~~~~~~~~~~-----~~~~~~-------  236 (285)
T cd06648         174 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPP-----LQAMKRIRDN-----LPPKLK-------  236 (285)
T ss_pred             cccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHHHHhc-----CCCCCc-------
Confidence            35578899999999888899999999999999999999999863211     1111100000     000000       


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                   ........+.+++.+||..+|++||++.++++
T Consensus       237 -------------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         237 -------------NLHKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             -------------ccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence                         00023346789999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=6.1e-33  Score=249.21  Aligned_cols=212  Identities=21%  Similarity=0.265  Sum_probs=165.1

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|+||.||+|....++..||+|.+....  ....+.+.+|+.+++.++|+||+++                
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4888999999999999999999999999999986542  2334578899999999999999998                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.+++.||.|||+.+   ++|+||+|+||++++++ .++|+|||.+....... 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~-  156 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRK---ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSM-  156 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEcCCCCeEEecccccchhccCCc-
Confidence                                   346788999999999999   99999999999999875 46999999997654321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .......|++.|+|||+..+..++.++|+||||+++|+|++|..||....     ...........        .+.
T Consensus       157 ---~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~--------~~~  220 (257)
T cd08225         157 ---ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN-----LHQLVLKICQG--------YFA  220 (257)
T ss_pred             ---ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-----HHHHHHHHhcc--------cCC
Confidence               11223457889999999988889999999999999999999999986321     11211111111        000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...                   ......+.+++.+||..+|++|||+.+|++.
T Consensus       221 ~~~-------------------~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         221 PIS-------------------PNFSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             CCC-------------------CCCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            000                   0223357899999999999999999999763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.5e-34  Score=266.88  Aligned_cols=216  Identities=18%  Similarity=0.252  Sum_probs=164.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeec--cCccchHHHHHHHHHHhhcC-CCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI--QCQGASKSFMAECKALKNIC-HRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l~-h~niv~l-------------  134 (356)
                      ...|++++.||+||.+.||++..... +.||+|.+..  .+.....-|.+|+..|.+|+ |.+||++             
T Consensus       360 g~~Yeilk~iG~GGSSkV~kV~~s~~-~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmv  438 (677)
T KOG0596|consen  360 GREYEILKQIGSGGSSKVFKVLNSDK-QIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMV  438 (677)
T ss_pred             cchhhHHHhhcCCCcceeeeeecCCC-cchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEE
Confidence            34699999999999999999987654 6777776542  23344567999999999997 8899987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..+..||+.|+.++|.+|   |||.||||.|+|+- .|.+||+|||.|..+.....
T Consensus       439 mE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~g---IVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTT  514 (677)
T KOG0596|consen  439 MECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHG---IVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTT  514 (677)
T ss_pred             eecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhc---eeecCCCcccEEEE-eeeEEeeeechhcccCcccc
Confidence                                    347889999999999999   99999999999986 57899999999987765443


Q ss_pred             CCccCCCCccccccccchhhhcCCC-----------CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSE-----------VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~-----------~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                        ......-+||+.||+||.+....           .+.++||||||||||+|+.|+.||..       +....     .
T Consensus       515 --sI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~-------~~n~~-----a  580 (677)
T KOG0596|consen  515 --SIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQ-------IINQI-----A  580 (677)
T ss_pred             --ceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHH-------HHHHH-----H
Confidence              23344568999999999886432           56789999999999999999999963       11111     1


Q ss_pred             chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+..+.++.-.-.++..                 ....+++.++..||..||++||++.+||+
T Consensus       581 Kl~aI~~P~~~Iefp~~-----------------~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  581 KLHAITDPNHEIEFPDI-----------------PENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             HHHhhcCCCccccccCC-----------------CCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence            12233444222122110                 01112789999999999999999999986

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=6.9e-33  Score=257.45  Aligned_cols=213  Identities=25%  Similarity=0.294  Sum_probs=164.9

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      |...+.||+|+||.||+|++..++..||+|.+.....   .....+.+|+.+++.++|||++++                
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            7778899999999999999998899999999874322   234568889999999999999876                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++.....      
T Consensus       107 ~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~---i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~------  177 (317)
T cd06635         107 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASIASP------  177 (317)
T ss_pred             CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcccEEECCCCCEEEecCCCccccCC------
Confidence                                 347789999999999999   99999999999999999999999999864322      


Q ss_pred             cCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          194 SSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        .....++..|+|||++.   ...++.++|||||||++|+|++|..||....... ....            +......
T Consensus       178 --~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~-~~~~------------~~~~~~~  242 (317)
T cd06635         178 --ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYH------------IAQNESP  242 (317)
T ss_pred             --cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHH-HHHH------------HHhccCC
Confidence              12345788899999974   4568899999999999999999999986421100 0101            1110000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      ...                  .......+.+++.+||+.+|.+||++.+|++.+-...
T Consensus       243 ~~~------------------~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  282 (317)
T cd06635         243 TLQ------------------SNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLR  282 (317)
T ss_pred             CCC------------------CccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhc
Confidence            000                  0123345789999999999999999999998765443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=1.7e-33  Score=246.09  Aligned_cols=168  Identities=29%  Similarity=0.355  Sum_probs=141.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC----eEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR----AVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      ...|+.++.||+|.||.||+|..+.++    ..+|||.++.+  .........+|+.+++.++|||++.+          
T Consensus        23 l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~  102 (438)
T KOG0666|consen   23 LFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKK  102 (438)
T ss_pred             HHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCce
Confidence            456999999999999999999766553    37899999754  33445678899999999999999987          


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC----CceEEcc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND----LFAHIGD  178 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~----~~~kl~D  178 (356)
                                                      ..|+.||+.|+.|||++=   |+||||||.|||+..+    |.+||+|
T Consensus       103 v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NW---vlHRDLKPaNIlvmgdgperG~VKIaD  179 (438)
T KOG0666|consen  103 VWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNW---VLHRDLKPANILVMGDGPERGRVKIAD  179 (438)
T ss_pred             EEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhh---eeeccCCcceEEEeccCCccCeeEeec
Confidence                                            347889999999999987   9999999999999876    9999999


Q ss_pred             cccccccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       179 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ||+++.+.....+ ......++-|..|.|||.+.|. .|+.+.|||++|||+.||+|-.+-|...
T Consensus       180 lGlaR~~~~plkp-l~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~  243 (438)
T KOG0666|consen  180 LGLARLFNNPLKP-LASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGR  243 (438)
T ss_pred             ccHHHHhhccccc-cccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccch
Confidence            9999987654432 2234557789999999999875 5899999999999999999999888653

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=6.3e-33  Score=252.57  Aligned_cols=212  Identities=20%  Similarity=0.243  Sum_probs=165.8

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      -|++.+.||.|+||.||+|.+..++..||+|.+.... ....+.+.+|+.++++++||||+++                 
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            3778889999999999999998889999999986432 2334578899999999999999976                 


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    ..
T Consensus        85 ~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~----~~  157 (277)
T cd06641          85 GGGSALDLLEPGPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ----IK  157 (277)
T ss_pred             CCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCC---eecCCCCHHhEEECCCCCEEEeecccceecccch----hh
Confidence                               457889999999999999   9999999999999999999999999987553221    11


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .....++..|+|||.+.+..++.++|+|||||++|+|++|..||......     .....         +.......   
T Consensus       158 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~-----~~~~~---------~~~~~~~~---  220 (277)
T cd06641         158 RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPM-----KVLFL---------IPKNNPPT---  220 (277)
T ss_pred             hccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchH-----HHHHH---------HhcCCCCC---
Confidence            22345788899999998888899999999999999999999998642111     00000         00000000   


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                     .....+..+.+++.+||+.+|.+||++.+++..
T Consensus       221 ---------------~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         221 ---------------LEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             ---------------CCcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence                           001234467899999999999999999999984

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-33  Score=241.02  Aligned_cols=216  Identities=17%  Similarity=0.220  Sum_probs=163.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc-CccchHHHHHHHHHHhhc-CCCChHHHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNI-CHRNLVRFIS-------------  136 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~-------------  136 (356)
                      ++.+.+..||.|.-|.|++++...+|...|||.+... +.+..++++..++++..- +.|.||+.++             
T Consensus        92 ndl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMe  171 (391)
T KOG0983|consen   92 NDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICME  171 (391)
T ss_pred             HHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHH
Confidence            4566778899999999999999999999999999754 445567888888876654 4899998621             


Q ss_pred             ------------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          137 ------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       137 ------------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                              +...++.||.||.++.  .|||||+||+|||+|+.|++||+|||.+-++...    
T Consensus       172 lMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdS----  245 (391)
T KOG0983|consen  172 LMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDS----  245 (391)
T ss_pred             HHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeecc----
Confidence                                    3345889999998754  3999999999999999999999999999876543    


Q ss_pred             ccCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                       .......|-+.|||||.+.-   ..|+.++||||||++++||.||+.||.....+..-+..... ..|        +.+
T Consensus       246 -kAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln-~eP--------P~L  315 (391)
T KOG0983|consen  246 -KAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLN-EEP--------PLL  315 (391)
T ss_pred             -cccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHh-cCC--------CCC
Confidence             23344667889999998853   46889999999999999999999999864333211211111 111        111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...                    ......+.+++..||..|+.+||...++++.
T Consensus       316 ~~~--------------------~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  316 PGH--------------------MGFSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             Ccc--------------------cCcCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            110                    0123357899999999999999999998864

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-33  Score=249.70  Aligned_cols=215  Identities=18%  Similarity=0.199  Sum_probs=165.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc-----CccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-----CQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .+|.+.+.||+|+||.||+|.+..++..||+|.+...     .......+.+|+.++++++|+||+++            
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4799999999999999999999999999999997532     12234578889999999999999986            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||+++....
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  158 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRIQT  158 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCEEECcccccccccc
Confidence                                       447789999999999999   99999999999999999999999999986532


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .... ........++..|+|||++.+..++.++|+|||||++|+|++|+.||.....    ......         ....
T Consensus       159 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~---------~~~~  224 (264)
T cd06653         159 ICMS-GTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEA----MAAIFK---------IATQ  224 (264)
T ss_pred             cccc-CccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCH----HHHHHH---------HHcC
Confidence            2111 1112235678899999999988899999999999999999999999964211    111100         0000


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ......                  +......+.+++.+||. +|..||++.+++.
T Consensus       225 ~~~~~~------------------p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         225 PTKPML------------------PDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             CCCCCC------------------CcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            000000                  01233467899999999 5799999998875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-33  Score=262.97  Aligned_cols=225  Identities=22%  Similarity=0.289  Sum_probs=180.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +...+.+.||+|.||.|.++.... +..||||+++..... ....|..|+++|.+++||||+++                
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg-~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEG-PLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecC-ceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHH
Confidence            456788999999999999999874 599999999865443 34789999999999999999987                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.||.||+.|++||.+..   +|||||.+.|+|+|.++++||+|||+++-+-...- 
T Consensus       617 mEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~n---fVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~y-  692 (807)
T KOG1094|consen  617 MENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLN---FVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDY-  692 (807)
T ss_pred             HhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhc---hhhccccccceeecCcccEEecCcccccccccCCc-
Confidence                                   569999999999999998   99999999999999999999999999986543322 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc--CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT--RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt--g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                       .......+-...|||+|.+..+++++++|+|+||+++||+++  ...||..+.+++  ..+-....++..-.       
T Consensus       693 -y~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~--vven~~~~~~~~~~-------  762 (807)
T KOG1094|consen  693 -YRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQ--VVENAGEFFRDQGR-------  762 (807)
T ss_pred             -eeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHH--HHHhhhhhcCCCCc-------
Confidence             233345666789999999999999999999999999999865  788987554332  22222222222111       


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                                      ...+..++-|+..+.++++.||..+-.+||++++|...|++.
T Consensus       763 ----------------~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  763 ----------------QVVLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             ----------------ceeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence                            112233347888899999999999999999999999988764

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=9.9e-33  Score=254.10  Aligned_cols=241  Identities=24%  Similarity=0.294  Sum_probs=167.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||.|+||.||+|.+..+++.||+|.++...  ......+.+|+.++++++||||+++             
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            4578999999999999999999999889999999997543  2233567789999999999999974             


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                        ..++.|++.||.|||+.+   |+|+||+|+||++++++.+||+|||
T Consensus        85 ~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---i~H~dl~p~nili~~~~~~kl~dfg  161 (302)
T cd07864          85 KKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKN---FLHRDIKCSNILLNNKGQIKLADFG  161 (302)
T ss_pred             cccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCcEEeCccc
Confidence                                              347789999999999999   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--  257 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--  257 (356)
                      ++........   .......++..|+|||.+.+ ..++.++|||||||++|+|++|++||..... ...+........  
T Consensus       162 ~~~~~~~~~~---~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~-~~~~~~~~~~~~~~  237 (302)
T cd07864         162 LARLYNSEES---RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQE-LAQLELISRLCGSP  237 (302)
T ss_pred             ccccccCCcc---cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhCCC
Confidence            9976543221   11122345778999998865 3578899999999999999999999964221 111111111110  


Q ss_pred             -CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          258 -PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       258 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       +.....+..........     ................+..+.+++.+||+.+|.+||++.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         238 CPAVWPDVIKLPYFNTMK-----PKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             Chhhcccccccccccccc-----cccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence             00000000000000000     0000000000000123456789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=4.7e-33  Score=255.51  Aligned_cols=238  Identities=24%  Similarity=0.271  Sum_probs=164.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|++|.||+|.+..+++.||+|.+.....  ...+.+.+|+.++++++||||+++               
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            579999999999999999999998899999999864322  234568889999999999999986               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.+|+.||.|||+++   ++|+||+|+||+++. ++.+||+|||++....... 
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~-  157 (294)
T PLN00009         82 YLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHR---VLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV-  157 (294)
T ss_pred             cccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCcceEEEECCCCEEEEcccccccccCCCc-
Confidence                                   246789999999999998   999999999999985 5679999999997543221 


Q ss_pred             CCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh-
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV-  268 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  268 (356)
                         .......++..|+|||++.+ ..++.++||||||+++|+|+||..||......+ .+...... .........+.. 
T Consensus       158 ---~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~  232 (294)
T PLN00009        158 ---RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEID-ELFKIFRI-LGTPNEETWPGVT  232 (294)
T ss_pred             ---cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHH-hCCCChhhccccc
Confidence               11223456889999998866 357889999999999999999999996432211 11111100 000000000000 


Q ss_pred             hcccccc-ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKV-LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      -..+... ...........    ........+.+++.+|++.+|++||++.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        233 SLPDYKSAFPKWPPKDLAT----VVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             cchhhhhhcccCCCCCHHH----hCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0000000 00000000000    00122345789999999999999999999986

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=2.4e-32  Score=245.08  Aligned_cols=209  Identities=22%  Similarity=0.248  Sum_probs=166.2

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||.|+||.||++.+..+++.+|+|.+....  ......+..|+.+++.++|+||+++                
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            4888999999999999999999899999999987542  2334567889999999999999987                


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.+++.||.|||+.+   ++|+||+|+||++++++.++|+|||++...... 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~---i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~-  156 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQK---ILHRDLKSANILLVANDLVKIGDLGISKVLKKN-  156 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCcceEEEecCCcEEEeeccchhhhccC-
Confidence                                     246778999999999999   999999999999999999999999999765432 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                           ......++..|++||.+.+..++.++|+||||+++|+|++|+.||......  .+.....               
T Consensus       157 -----~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~--~~~~~~~---------------  214 (256)
T cd08530         157 -----MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ--DLRYKVQ---------------  214 (256)
T ss_pred             -----CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHh---------------
Confidence                 112245678899999999888999999999999999999999999643211  1111100               


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .....               .........+.+++.+||+.+|++||++.++++
T Consensus       215 ~~~~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         215 RGKYP---------------PIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             cCCCC---------------CCchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            00000               001134456789999999999999999999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.5e-32  Score=245.02  Aligned_cols=212  Identities=21%  Similarity=0.263  Sum_probs=167.6

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      +|.+.+.||+|++|.||++.+..++..+++|++........+.+.+|+.+++.++|+|++++                  
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            47888999999999999999998889999999976655456788999999999999999876                  


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||.+........    
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~----  153 (253)
T cd05122          81 GGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA----  153 (253)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCC---EecCCCCHHHEEEccCCeEEEeecccccccccccc----
Confidence                                347889999999999998   99999999999999999999999999876543221    


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                       .....++..|++||.+.+..++.++|+||||+++|+|++|..||......  .......            ........
T Consensus       154 -~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~~~~~~~------------~~~~~~~~  218 (253)
T cd05122         154 -RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPM--KALFKIA------------TNGPPGLR  218 (253)
T ss_pred             -ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchH--HHHHHHH------------hcCCCCcC
Confidence             23456788999999998888999999999999999999999998642110  0000000            00000000


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                      ........+.+++.+||+.||.+|||+.++++
T Consensus       219 ----------------~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         219 ----------------NPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             ----------------cccccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                            00012346789999999999999999999985

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.3e-32  Score=252.68  Aligned_cols=209  Identities=19%  Similarity=0.233  Sum_probs=163.5

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ...||+|+||.||+|....++..||+|.+..........+.+|+.+++.++|+||+++                      
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  104 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence            4579999999999999998999999999865544455678899999999999999987                      


Q ss_pred             --------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCcc
Q 039228          135 --------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR  200 (356)
Q Consensus       135 --------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~  200 (356)
                                    ..++.+++.||+|||+.+   ++|+||+|+||+++.++.++|+|||++.......    .......
T Consensus       105 ~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~g---ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~----~~~~~~~  177 (292)
T cd06657         105 TDIVTHTRMNEEQIAAVCLAVLKALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV----PRRKSLV  177 (292)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCCEEEcccccceeccccc----ccccccc
Confidence                          347889999999999999   9999999999999999999999999987543221    1123356


Q ss_pred             ccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccc
Q 039228          201 RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTN  280 (356)
Q Consensus       201 gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  280 (356)
                      ++..|++||.+.+..++.++|+||||+++|+|++|..||.....  ...........+....        .         
T Consensus       178 ~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~--~~~~~~~~~~~~~~~~--------~---------  238 (292)
T cd06657         178 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPPKLK--------N---------  238 (292)
T ss_pred             cCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhhCCcccC--------C---------
Confidence            78899999999888889999999999999999999999863211  1111111111111000        0         


Q ss_pred             cchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          281 SNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                 .......+.+++.+||+.+|.+||++.+|+.
T Consensus       239 -----------~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         239 -----------LHKVSPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             -----------cccCCHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence                       0022335678999999999999999999887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-32  Score=250.86  Aligned_cols=213  Identities=22%  Similarity=0.291  Sum_probs=164.5

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcC---CCChHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNIC---HRNLVRF--------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~---h~niv~l--------------  134 (356)
                      .|++.+.||+|+||.||+|.+..+++.||+|.+.... ....+.+.+|+.+++.++   |||++++              
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            4788899999999999999999899999999987542 334567888999999987   9999976              


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++.......   
T Consensus        82 e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~---i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~---  155 (277)
T cd06917          82 EYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVG---VIHRDIKAANILVTNTGNVKLCDFGVAALLNQNS---  155 (277)
T ss_pred             ecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCcCHHHEEEcCCCCEEEccCCceeecCCCc---
Confidence                                  457889999999999999   9999999999999999999999999997654322   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......|+..|+|||.+.+ ..++.++|+||||+++|+|++|..||......     .........     ..+.+..
T Consensus       156 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-----~~~~~~~~~-----~~~~~~~  224 (277)
T cd06917         156 -SKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-----RAMMLIPKS-----KPPRLED  224 (277)
T ss_pred             -cccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh-----hhhhccccC-----CCCCCCc
Confidence             12233467889999998865 44688999999999999999999999643211     100000000     0000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +                     ..+..+.+++.+||+.||++||++.+++..
T Consensus       225 ~---------------------~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         225 N---------------------GYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             c---------------------cCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence            0                     123457899999999999999999999863

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.4e-32  Score=251.45  Aligned_cols=216  Identities=20%  Similarity=0.245  Sum_probs=169.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..+.|++...||.|++|.||+|.+..++..|++|.+..... ..+.+..|+.+++.++|+|++++               
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEe
Confidence            46679999999999999999999998889999999975544 45678899999999999999875               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........ 
T Consensus        96 ~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~g---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-  171 (286)
T cd06614          96 YMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQN---VIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS-  171 (286)
T ss_pred             ccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCChhhEEEcCCCCEEECccchhhhhccchh-
Confidence                                   448889999999999998   99999999999999999999999999865432211 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......++..|++||++.+..++.++|+||||+++|+|++|..||.....    ......         +.......
T Consensus       172 ---~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~----~~~~~~---------~~~~~~~~  235 (286)
T cd06614         172 ---KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP----LRALFL---------ITTKGIPP  235 (286)
T ss_pred             ---hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH----HHHHHH---------HHhcCCCC
Confidence               11234467889999999888899999999999999999999999863211    111000         00000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .                 .....++..+.+++.+||+.+|.+||++.+|+..
T Consensus       236 ~-----------------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  270 (286)
T cd06614         236 L-----------------KNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQH  270 (286)
T ss_pred             C-----------------cchhhCCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            0                 0001234567899999999999999999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-32  Score=252.70  Aligned_cols=243  Identities=23%  Similarity=0.298  Sum_probs=170.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHh--hcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALK--NICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~--~l~h~niv~l--------------  134 (356)
                      .....+.++||+|.||.||+|...  ++.||||+++.   ...+.|.+|-+|.+  .++|+||++|              
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL~--~~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~ey  283 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQLD--NRLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEY  283 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhcc--CceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccce
Confidence            456778889999999999999987  69999999973   34567888877766  5789999998              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhc------CCCcEEecCCCCCCeEeCCCCceEEcccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHH------CQELILHCDPKPSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~------~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a  182 (356)
                                                .+++..+++||+|||+.      .+++|+|||||+.|||+.+++++.|+|||+|
T Consensus       284 wLVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLA  363 (534)
T KOG3653|consen  284 WLVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLA  363 (534)
T ss_pred             eEEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeecccee
Confidence                                      34788899999999974      2456999999999999999999999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCC-CC-----CccchHhHHHHHHHHHcCCCCCCccccC--CccHHHHHH
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE-VS-----TNGDAYNYGILLLEMVTRRKPIDFMFEG--DLNLHNFAR  254 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-----~~sDiwSlG~~l~elltg~~Pf~~~~~~--~~~~~~~~~  254 (356)
                      ..+......  .....-+||..|||||++.+.. +.     .+.||||+|.++|||++.-.-+......  ...+..-+.
T Consensus       364 l~~~p~~~~--~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG  441 (534)
T KOG3653|consen  364 LRLEPGKPQ--GDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVG  441 (534)
T ss_pred             EEecCCCCC--cchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhc
Confidence            988644332  2333478999999999997642 11     3579999999999999864433210000  111111111


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                        ....+.++.+-.+....  ++.....|...       ..+..|.+.+..||..||+.|-|+.=+.+.+.++...-
T Consensus       442 --~hPt~e~mq~~VV~kK~--RP~~p~~W~~h-------~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~  507 (534)
T KOG3653|consen  442 --NHPTLEEMQELVVRKKQ--RPKIPDAWRKH-------AGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLW  507 (534)
T ss_pred             --CCCCHHHHHHHHHhhcc--CCCChhhhhcC-------ccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccC
Confidence              11222222221111110  11111112222       34556889999999999999999999999888876544

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-32  Score=248.86  Aligned_cols=234  Identities=24%  Similarity=0.245  Sum_probs=163.8

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhc---CCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNI---CHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l--------------  134 (356)
                      |++.+.||+|+||.||+|.+..+++.||+|.+.....  .....+.+|+.+++++   +|||++++              
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            6778899999999999999998889999999974322  2234566788777665   59998876              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                   ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++...
T Consensus        81 ~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~---i~h~~l~~~nili~~~~~~~l~dfg~~~~~  157 (287)
T cd07838          81 LTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIY  157 (287)
T ss_pred             eEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhEEEccCCCEEEeccCcceec
Confidence                                         347789999999999999   999999999999999999999999999765


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CCchHHH
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PNRVMDI  264 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~  264 (356)
                      ....     ......++..|+|||++.+..++.++|+|||||++|+|++|.+||...... ..+........ +......
T Consensus       158 ~~~~-----~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  231 (287)
T cd07838         158 SFEM-----ALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEA-DQLDKIFDVIGLPSEEEWP  231 (287)
T ss_pred             cCCc-----ccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChH-HHHHHHHHHcCCCChHhcC
Confidence            3321     112234688899999999989999999999999999999999998743221 11111111111 1000000


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ........      ....................+.+++.+||+.||.+||++.+++.
T Consensus       232 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         232 RNVSLPRS------SFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             CCcccchh------hcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence            00000000      00000000001111234456789999999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-33  Score=245.99  Aligned_cols=164  Identities=25%  Similarity=0.324  Sum_probs=143.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      -++|..+++||+|.||.|.+++.+.+++.+|+|++++.--   .....-+.|-++|+..+||.+..+             
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            4679999999999999999999999999999999986532   333456779999999999999877             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..+-.+|+.||.|||+++   ||+||||.+|+|+|.+|++||+|||+++..-..  
T Consensus       247 MeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~---ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~--  321 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRN---IVYRDLKLENLLLDKDGHIKITDFGLCKEEIKY--  321 (516)
T ss_pred             EEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCC---eeeeechhhhheeccCCceEeeecccchhcccc--
Confidence                                    225568999999999998   999999999999999999999999999853222  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                        ......++||+.|+|||++....|+.++|.|.+||++|||++|+.||..
T Consensus       322 --g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn  370 (516)
T KOG0690|consen  322 --GDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYN  370 (516)
T ss_pred             --cceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccc
Confidence              2345569999999999999999999999999999999999999999974

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-33  Score=266.84  Aligned_cols=241  Identities=20%  Similarity=0.216  Sum_probs=173.2

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      +...+.||+|+||.||+|+++.+|+.||||.++... ....+...+|+++|++++|+|||++                  
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            556678999999999999999999999999997543 3456778899999999999999998                  


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC--CCC--ceEEcccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD--NDL--FAHIGDFELA  182 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~--~~~--~~kl~Dfg~a  182 (356)
                                                  +.++.++..||.|||+++   ||||||||.||++.  .+|  ..||+|||.|
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~---IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENG---IVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcC---ceeccCCCCcEEEeecCCCceEEeeeccccc
Confidence                                        558889999999999999   99999999999994  323  5699999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhc-CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC---C
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDL-GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF---P  258 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~---~  258 (356)
                      +.+++..     ....++||..|.+||... ...|+..+|.|||||++|++.||..||-..... .+..+......   +
T Consensus       172 rel~d~s-----~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~p-k~~~~~~~~~~tkkp  245 (732)
T KOG4250|consen  172 RELDDNS-----LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGP-KNNKEIMWHIITKKP  245 (732)
T ss_pred             ccCCCCC-----eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCc-cccchhhhhhhccCC
Confidence            9776533     456689999999999998 488999999999999999999999999643222 11111111111   1


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC--ChHHHHHHHHHhhh
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM--NVPNAVHDLQSVNN  329 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP--s~~~vl~~L~~i~~  329 (356)
                      ....-..++...+...    +...+.-  .-...+.....+-..+..++..+|.+|.  ...+....+..|..
T Consensus       246 ~~v~i~~~~~eNgpv~----~s~~lP~--p~~Ls~~l~~~~~kwLa~~L~~~~~~~~~~~~~~~Fa~~~dIL~  312 (732)
T KOG4250|consen  246 SGVAIGAQEEENGPVE----WSSTLPQ--PNHLSRGLATRLTKWLASMLEWNPRKRGHEGFDRFFAEVDDILN  312 (732)
T ss_pred             CceeEeeecccCCcee----eeccCCC--cccccHHHHhhhhHHHHHHHhhhHHHhCCCCcchHHHHHHHHHh
Confidence            1111111111111100    0000000  0011112333455667777888999999  88888888887764

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=6.7e-32  Score=250.15  Aligned_cols=234  Identities=15%  Similarity=0.171  Sum_probs=155.2

Q ss_pred             CceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH---------------------------
Q 039228           84 SFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF---------------------------  134 (356)
Q Consensus        84 ~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l---------------------------  134 (356)
                      ++|.||.++...+++.||||++...  .....+.+..|+.+++.++|+||+++                           
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~   91 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLK   91 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHH
Confidence            4455666666667899999998754  33455688999999999999999997                           


Q ss_pred             ------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC---CccCCCCc
Q 039228          135 ------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP---TQSSSNGV  199 (356)
Q Consensus       135 ------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~  199 (356)
                                  ..++.|++.||.|||+++   |+||||||+||+++.++.++|+|||.+.........   ........
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~---ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~  168 (314)
T cd08216          92 THFPEGLPELAIAFILKDVLNALDYIHSKG---FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSS  168 (314)
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccc
Confidence                        337789999999999999   999999999999999999999999998754322110   11122334


Q ss_pred             cccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH----HHhhhhhcccc
Q 039228          200 RRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM----DIVNLVLLNDN  273 (356)
Q Consensus       200 ~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~  273 (356)
                      .++..|+|||++..  ..++.++|+|||||++|||++|..||....... ...+......+..+.    ......+....
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (314)
T cd08216         169 VKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQ-MLLEKVRGTVPCLLDKSTYPLYEDSMSQSR  247 (314)
T ss_pred             cccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhccCccccccCchhhhcCCcCccc
Confidence            56778999999876  357899999999999999999999997532211 111111111110000    00000000000


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .  ......................+.+++.+||+.||++|||++++++.
T Consensus       248 ~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         248 S--SNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             c--cccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence            0  00000000000011112334567899999999999999999999874

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=3.2e-32  Score=243.96  Aligned_cols=212  Identities=20%  Similarity=0.319  Sum_probs=167.9

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|.+.+.||.|+||.||++.+..++..||+|.+.....  ...+.+..|+++++.++|||++++                
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            48888999999999999999998899999999875433  455678899999999999999986                


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~---~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  157 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRK---ILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV  157 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHHeEEcCCCcEEECCccceeecccCc
Confidence                                     347789999999999998   9999999999999999999999999997654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          .......+++.|+|||...+..++.++|+||+|+++|+|++|..||....     ............        .
T Consensus       158 ----~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~-----~~~~~~~~~~~~--------~  220 (258)
T cd08215         158 ----DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN-----LLELALKILKGQ--------Y  220 (258)
T ss_pred             ----ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc-----HHHHHHHHhcCC--------C
Confidence                12233567889999999988889999999999999999999999986422     111111110000        0


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      . ..                  +......+.+++.+||..+|++|||+.++++.
T Consensus       221 ~-~~------------------~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         221 P-PI------------------PSQYSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             C-CC------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            0 00                  00223457899999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1.8e-32  Score=253.63  Aligned_cols=212  Identities=25%  Similarity=0.319  Sum_probs=163.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      +.|...+.||.|+||.||+|++..++..||+|.+...   .......+.+|+.+++.++|+|++++              
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence            3477788999999999999999988999999998643   22334567889999999999999886              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   ++||||+|+||+++.++.++|+|||++.....    
T Consensus        95 e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~----  167 (308)
T cd06634          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAP----  167 (308)
T ss_pred             EccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHhEEECCCCcEEECCcccceeecC----
Confidence                                   346788999999999998   99999999999999999999999999875432    


Q ss_pred             CccCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          192 TQSSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                          .....++..|+|||.+.   ...++.++|||||||++|+|++|..||....... ..........+         .
T Consensus       168 ----~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~~~~~~---------~  233 (308)
T cd06634         168 ----ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNESP---------A  233 (308)
T ss_pred             ----cccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHH-HHHHHhhcCCC---------C
Confidence                12345788999999974   3567889999999999999999999986421110 00001000000         0


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      ..                     .......+.+++.+||+.+|++||++.+|+..--
T Consensus       234 ~~---------------------~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~  269 (308)
T cd06634         234 LQ---------------------SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF  269 (308)
T ss_pred             cC---------------------cccccHHHHHHHHHHhhCCcccCCCHHHHhhCcc
Confidence            00                     0123345789999999999999999999987643

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.4e-32  Score=256.66  Aligned_cols=249  Identities=16%  Similarity=0.204  Sum_probs=161.7

Q ss_pred             ccceec--CceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           78 NLIGVG--SFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G--~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      ..||+|  +||+||+|.+..+++.||+|++....  ....+.+.+|+.+++.++||||+++                   
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            356666  99999999999899999999987542  2234678889999999999999975                   


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC--
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT--  192 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~--  192 (356)
                                          ..++.|++.||+|||+.+   |+||||||+||+++.++.++++||+.+..........  
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNG---YIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKV  160 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccc
Confidence                                247889999999999999   9999999999999999999999998654322111100  


Q ss_pred             -ccCCCCccccccccchhhhcCC--CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--------CCch
Q 039228          193 -QSSSNGVRRTIGYTALDYDLGS--EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--------PNRV  261 (356)
Q Consensus       193 -~~~~~~~~gt~~y~aPE~~~~~--~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--------~~~~  261 (356)
                       ........++..|+|||++.+.  .++.++|||||||++|+|++|..||.................+        +...
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (328)
T cd08226         161 VYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEE  240 (328)
T ss_pred             cccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhh
Confidence             0111122345679999998763  4789999999999999999999999754321111000000000        0000


Q ss_pred             HHHhhhh------hccccccccccccchh-hhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH--HHHHhhhh
Q 039228          262 MDIVNLV------LLNDNKVLAGTNSNML-RKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH--DLQSVNNI  330 (356)
Q Consensus       262 ~~~~~~~------l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~--~L~~i~~~  330 (356)
                      ..+.+..      +...... ......+. ..........+...+.+|+.+||+.||++|||+.++++  .+..+.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~~~  317 (328)
T cd08226         241 SRMKNSQSGVDSGIGESVVA-AGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKEQ  317 (328)
T ss_pred             hhhccchhhhhcccccchhc-cccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHHHh
Confidence            0000000      0000000 00000000 00011112346667899999999999999999999974  34444443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=8.6e-32  Score=245.05  Aligned_cols=234  Identities=23%  Similarity=0.247  Sum_probs=166.2

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      |+..+.||+|++|.||+|....+++.||+|.+....  ....+.+..|+.+++.++|+|++++                 
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            566788999999999999999989999999997653  3345678889999999999999987                 


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.||.|||+.+   |+|+||+|+||++++++.++|+|||++........    
T Consensus        81 ~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~----  153 (282)
T cd07829          81 DMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR----  153 (282)
T ss_pred             CcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChheEEEcCCCCEEEecCCcccccCCCcc----
Confidence                                347788999999999999   99999999999999999999999999976543221    


Q ss_pred             CCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC--chHHHhhhh--h
Q 039228          195 SSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN--RVMDIVNLV--L  269 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--l  269 (356)
                      ......++..|+|||.+.+. .++.++||||||+++|||++|..||...... ..+..........  .........  .
T Consensus       154 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (282)
T cd07829         154 TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEI-DQLFKIFQILGTPTEESWPGVTKLPDY  232 (282)
T ss_pred             ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHH-HHHHHHHHHhCCCcHHHHHhhcccccc
Confidence            12223456789999998766 7889999999999999999999998643211 1111111111000  000000000  0


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .....   ..........    .......+.+++.+||..||++||++.+|+.
T Consensus       233 ~~~~~---~~~~~~~~~~----~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         233 KPTFP---KFPPKDLEKV----LPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             ccccc---ccCccchHHh----cccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            00000   0000000001    1122456899999999999999999999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=2.2e-32  Score=244.90  Aligned_cols=215  Identities=21%  Similarity=0.264  Sum_probs=169.0

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|.+.+.||+|++|.||+|.+..++..|++|.+.....  ...+.+.+|+.++++++||||+++                
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            47788999999999999999998899999999875542  445778899999999999999986                


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||.+.........
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~  157 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNG---IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETG  157 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEcCCCCEEEcccccEEeccccccc
Confidence                                   447889999999999998   999999999999999999999999999866443211


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                        .......++..|++||.+.+...+.++||||||+++|+|++|..||....    ........        +.......
T Consensus       158 --~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----~~~~~~~~--------~~~~~~~~  223 (260)
T cd06606         158 --EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG----NPMAALYK--------IGSSGEPP  223 (260)
T ss_pred             --ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----chHHHHHh--------ccccCCCc
Confidence              11234567889999999988889999999999999999999999997533    11111000        00000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .                  ........+.+++.+|++.+|++||++.+++.
T Consensus       224 ~------------------~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         224 E------------------IPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             C------------------CCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            0                  01123456889999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=4.1e-32  Score=251.82  Aligned_cols=208  Identities=25%  Similarity=0.308  Sum_probs=160.5

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      |...+.||+|+||.||+|++..++..|++|.+.....   .....+..|+.+++.++|||++++                
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            6667789999999999999998999999999874322   233567889999999999999986                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++....       
T Consensus       103 ~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~g---i~H~dl~p~nili~~~~~~kL~dfg~~~~~~-------  172 (313)
T cd06633         103 CLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASKSS-------  172 (313)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChhhEEECCCCCEEEeecCCCcccC-------
Confidence                                 347789999999999999   9999999999999999999999999985321       


Q ss_pred             cCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          194 SSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                       ......++..|+|||++.   ...++.++||||||+++|+|++|..||....... ..........+.         ..
T Consensus       173 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~-~~~~~~~~~~~~---------~~  241 (313)
T cd06633         173 -PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNDSPT---------LQ  241 (313)
T ss_pred             -CCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcCCCC---------CC
Confidence             122356788999999974   4568889999999999999999999986432110 000000000000         00


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                           .......+.+++.+||+.+|.+||++.+++..
T Consensus       242 ---------------------~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         242 ---------------------SNEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             ---------------------ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                                 00122357789999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=2.8e-32  Score=245.57  Aligned_cols=212  Identities=19%  Similarity=0.230  Sum_probs=160.9

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ||.|+||.||+|++..+++.|++|.+.....   ...+.+.+|+.++++++||||+++                      
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            6899999999999998899999999865433   345678899999999999999987                      


Q ss_pred             ---------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC----CccC
Q 039228          135 ---------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP----TQSS  195 (356)
Q Consensus       135 ---------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~----~~~~  195 (356)
                                     ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.........    ....
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  157 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSNG---IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKE  157 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC---eecCCCCHHHeEEcCCCCEEEEecccchhcccCccccccccccc
Confidence                           347889999999999999   999999999999999999999999998754322110    0112


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .....++..|++||.......+.++|+||||+++|++++|..||.....     .....            .........
T Consensus       158 ~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-----~~~~~------------~~~~~~~~~  220 (265)
T cd05579         158 DKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP-----EEIFQ------------NILNGKIEW  220 (265)
T ss_pred             ccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH-----HHHHH------------HHhcCCcCC
Confidence            2335577889999999888889999999999999999999999964321     11111            000000000


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                                   + ........+.+++.+||+.+|.+|||+.++.+.|+
T Consensus       221 -------------~-~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         221 -------------P-EDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             -------------C-ccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence                         0 00011346789999999999999999966665553

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6.4e-33  Score=262.12  Aligned_cols=212  Identities=21%  Similarity=0.238  Sum_probs=170.8

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc--chHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG--ASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ....|.+...||+|.|+.|.+|++..++..||||++.+..-.  ....+.+|+++|..++|||||++             
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            457799999999999999999999999999999999765433  23458899999999999999998             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              -.++.|++.|++|||.++   |||||||++||||+.+.++||+|||++.++...  
T Consensus       134 ~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~---ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~--  208 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKN---IVHRDLKAENILLDENMNIKIADFGFSTFFDYG--  208 (596)
T ss_pred             EEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcc---eeccccchhhcccccccceeeeccccceeeccc--
Confidence                                    237889999999999999   999999999999999999999999999987643  


Q ss_pred             CCccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                         ......+|++.|.|||++.+..| ++.+|+||+|+++|-|+.|..||++..-.     .            +-+..+
T Consensus       209 ---~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk-----~------------Lr~rvl  268 (596)
T KOG0586|consen  209 ---LMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLK-----E------------LRPRVL  268 (596)
T ss_pred             ---ccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccc-----c------------ccchhe
Confidence               33445889999999999998876 58899999999999999999999843211     1            111111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+.+.                ++.-....+.+++.+.+-.+|.+|++++++.+
T Consensus       269 ~gk~r----------------Ip~~ms~dce~lLrk~lvl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  269 RGKYR----------------IPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMK  305 (596)
T ss_pred             eeeec----------------ccceeechhHHHHHHhhccCccccCCHHHhhh
Confidence            11111                01112224568899999999999999998865

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=4.7e-32  Score=253.67  Aligned_cols=244  Identities=18%  Similarity=0.179  Sum_probs=164.2

Q ss_pred             cCCCC-ccccceecCceEEEEEEECCCCeEEEEEEeeccCccc--------------hHHHHHHHHHHhhcCCCChHHH-
Q 039228           71 TDGFP-LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--------------SKSFMAECKALKNICHRNLVRF-  134 (356)
Q Consensus        71 ~~~~~-~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~--------------~~~~~~E~~~l~~l~h~niv~l-  134 (356)
                      .++|. +.+.||.|+||.||+|.+..+++.||||.+.......              ...+.+|+.+++.++|+||+++ 
T Consensus         7 ~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (335)
T PTZ00024          7 SERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV   86 (335)
T ss_pred             ccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence            34565 4577999999999999999889999999986432211              1257789999999999999886 


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                         ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+||
T Consensus        87 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~---i~H~dl~~~nill~~~~~~kl~df  163 (335)
T PTZ00024         87 DVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWY---FMHRDLSPANIFINSKGICKIADF  163 (335)
T ss_pred             EEEecCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHeEECCCCCEEECCc
Confidence                                               447889999999999999   999999999999999999999999


Q ss_pred             ccccccccCCC----------CCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCcc
Q 039228          180 ELARFRQEVSN----------PTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN  248 (356)
Q Consensus       180 g~a~~~~~~~~----------~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~  248 (356)
                      |++........          ..........++..|+|||++.+. .++.++|+|||||++|+|++|..||......+ .
T Consensus       164 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~-~  242 (335)
T PTZ00024        164 GLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEID-Q  242 (335)
T ss_pred             cceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-H
Confidence            99976541110          001112233467889999998764 46889999999999999999999997432211 1


Q ss_pred             HHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          249 LHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +..............+-...............+    .............+.+++.+||+.+|++||++.+++.
T Consensus       243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        243 LGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKP----KDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             HHHHHHHhCCCchhhCcchhhcccccccCcCCc----ccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence            111111000000000000000000000000000    0000001123456789999999999999999999986

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=5e-32  Score=242.51  Aligned_cols=211  Identities=26%  Similarity=0.302  Sum_probs=167.0

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      +|++.+.||+|++|.||+|.+..+++.|++|.+.....  .....+.+|++++++++|||++++                
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            47889999999999999999998889999999975543  345678999999999999999876                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   |+|+||+|+||+++.++.++|+|||++........   
T Consensus        81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---  154 (254)
T cd06627          81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQG---VIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK---  154 (254)
T ss_pred             CCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEECCCCCEEEeccccceecCCCcc---
Confidence                                 457889999999999999   99999999999999999999999999986643321   


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                       ......++..|+|||...+..++.++|+||+|+++|+|++|..||....    .........         .... ...
T Consensus       155 -~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~----~~~~~~~~~---------~~~~-~~~  219 (254)
T cd06627         155 -DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN----PMAALFRIV---------QDDH-PPL  219 (254)
T ss_pred             -cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHh---------ccCC-CCC
Confidence             1233567889999999988888999999999999999999999986322    111111000         0000 000


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                        .......+.+++.+||..+|++|||+.+++.
T Consensus       220 ------------------~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         220 ------------------PEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             ------------------CCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence                              0123346789999999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.98  E-value=2.2e-33  Score=256.13  Aligned_cols=211  Identities=21%  Similarity=0.231  Sum_probs=165.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      -+.|..-++||+||||.||-+....||+.+|.|.+.+..   .......++|-.+|.+++.+.||.+             
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            356888999999999999999999999999999986432   2233456789999999999999976             


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.+|+.||.+||+.+   ||+|||||+|||+|+.|+++|+|+|+|..+...
T Consensus       264 LtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~---iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g  340 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRR---IVYRDLKPENILLDDHGHVRISDLGLAVEIPEG  340 (591)
T ss_pred             EEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcc---eeeccCChhheeeccCCCeEeeccceEEecCCC
Confidence                                      558899999999999999   999999999999999999999999999876543


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .     .....+||.+|||||++.++.|+...|.|||||++|||+.|+.||....+.. .             .+-+|..
T Consensus       341 ~-----~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKv-k-------------~eEvdrr  401 (591)
T KOG0986|consen  341 K-----PIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKV-K-------------REEVDRR  401 (591)
T ss_pred             C-----ccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhh-h-------------HHHHHHH
Confidence            3     2233589999999999999999999999999999999999999996432211 0             0112222


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP  318 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  318 (356)
                      ...+...               -+....++..++....|..||.+|-...
T Consensus       402 ~~~~~~e---------------y~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  402 TLEDPEE---------------YSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             Hhcchhh---------------cccccCHHHHHHHHHHHccCHHHhccCC
Confidence            2211110               0013334567788888999999997543

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.98  E-value=1.6e-31  Score=243.69  Aligned_cols=237  Identities=22%  Similarity=0.221  Sum_probs=162.7

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHHHHHHHHHHhhcC-CCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNIC-HRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~-h~niv~l-----------------  134 (356)
                      |++.+.||+|+||.||+|....+++.|+||.+...... ......+|+..+++++ |+||+++                 
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            67788999999999999999888899999998654322 2234567999999999 9999988                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~---i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~----  153 (283)
T cd07830          81 EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHG---FFHRDLKPENLLVSGPEVVKIADFGLAREIRSRP----  153 (283)
T ss_pred             CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCCEEEeecccceeccCCC----
Confidence                                 336778999999999999   9999999999999999999999999997553321    


Q ss_pred             cCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh-hcc
Q 039228          194 SSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV-LLN  271 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~  271 (356)
                       ......++..|+|||++.+ ..++.++|+||||+++++|++|++||......+ .........-+.....+.+.. +..
T Consensus       154 -~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  231 (283)
T cd07830         154 -PYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEID-QLYKICSVLGTPTKQDWPEGYKLAS  231 (283)
T ss_pred             -CcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHH-HHHHHHHhcCCCChhhhhhHhhhhc
Confidence             1223457888999998754 457899999999999999999999986432211 111111100000000000000 000


Q ss_pred             ccc-cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNK-VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ... ..............    ......+.+++.+||+.+|++|||+.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         232 KLGFRFPQFAPTSLHQLI----PNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             cccccccccccccHHHHc----ccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            000 00000000000000    0113467899999999999999999998753

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.98  E-value=6.5e-34  Score=243.89  Aligned_cols=219  Identities=22%  Similarity=0.262  Sum_probs=161.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHh-hcCCCChHHHHHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALK-NICHRNLVRFISIA-----------  138 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~-~l~h~niv~l~~i~-----------  138 (356)
                      ++.+-+..||.|+||+|++-.++.+|+..|||.+..... ...++++.|.+... .-+.||||++++.+           
T Consensus        64 ~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCME  143 (361)
T KOG1006|consen   64 DNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICME  143 (361)
T ss_pred             chHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHH
Confidence            445567789999999999999999999999999976544 45678889988654 45689999994421           


Q ss_pred             ------------------------------HHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          139 ------------------------------IDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       139 ------------------------------~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                    .-.+.||.||-..-  .|||||+||+|||++..|.+||+|||.+..+...
T Consensus       144 LMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~S  221 (361)
T KOG1006|consen  144 LMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDS  221 (361)
T ss_pred             HHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHHHH
Confidence                                          12568999998743  4999999999999999999999999999765432


Q ss_pred             CCCCccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                           ...+.-.|-..|||||.+..  ..|+.+||+||||++|||+.||..|+.....-   +             +-+-
T Consensus       222 -----iAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~sv---f-------------eql~  280 (361)
T KOG1006|consen  222 -----IAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSV---F-------------EQLC  280 (361)
T ss_pred             -----HHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHH---H-------------HHHH
Confidence                 22334567788999998863  35899999999999999999999998743221   1             1111


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ....++++.       ++.   .....+....+..++..|+-.|-.+||...++.++
T Consensus       281 ~Vv~gdpp~-------l~~---~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  281 QVVIGDPPI-------LLF---DKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             HHHcCCCCe-------ecC---cccccccCHHHHHHHHHHhhcccccCcchhhhhcC
Confidence            111111110       000   00112345578899999999999999999998764

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.98  E-value=4.6e-32  Score=247.38  Aligned_cols=206  Identities=21%  Similarity=0.235  Sum_probs=150.8

Q ss_pred             cceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHH---hhcCCCChHHH------------------
Q 039228           79 LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKAL---KNICHRNLVRF------------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l---~~l~h~niv~l------------------  134 (356)
                      .||+|+||.||++.+..+++.||+|.+.....   .....+..|..++   ...+||||+.+                  
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            48999999999999998899999999864322   1122334444433   34478998764                  


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++......      .
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~---ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~------~  151 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKK------K  151 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCCCCCHHHEEECCCCCEEEccCCcceecccc------C
Confidence                               457889999999999999   999999999999999999999999998644321      1


Q ss_pred             CCCccccccccchhhhc-CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          196 SNGVRRTIGYTALDYDL-GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~-~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      .....|+..|+|||.+. +..++.++|+|||||++|+|++|..||........  .........      ....+     
T Consensus       152 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~--~~~~~~~~~------~~~~~-----  218 (279)
T cd05633         152 PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--HEIDRMTLT------VNVEL-----  218 (279)
T ss_pred             ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCH--HHHHHHhhc------CCcCC-----
Confidence            12346789999999986 45688999999999999999999999974332211  111110000      00000     


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVHD  323 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~~  323 (356)
                                       +......+.+++.+||+.||.+||     +++++++.
T Consensus       219 -----------------~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         219 -----------------PDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             -----------------ccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence                             012344678999999999999999     58888764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.98  E-value=6.4e-32  Score=243.67  Aligned_cols=206  Identities=21%  Similarity=0.218  Sum_probs=159.2

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ||.|+||.||+|++..+++.||+|++....   ....+.+.+|+.+++.++||||+++                      
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            699999999999999889999999987542   2334678899999999999999987                      


Q ss_pred             ---------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCc
Q 039228          135 ---------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV  199 (356)
Q Consensus       135 ---------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  199 (356)
                                     ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......     .....
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~---~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~-----~~~~~  152 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNRG---IIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ-----KTWTF  152 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCC---cccCCCCHHHEEEcCCCCEEEeeCCcccccCccc-----ccccc
Confidence                           347789999999999998   9999999999999999999999999997654321     12234


Q ss_pred             cccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccccc
Q 039228          200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGT  279 (356)
Q Consensus       200 ~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  279 (356)
                      .++..|++||.+.+..++.++|+||||+++|+|++|..||.....+.   ......        +.........      
T Consensus       153 ~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~~~--------~~~~~~~~~~------  215 (262)
T cd05572         153 CGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDP---MEIYND--------ILKGNGKLEF------  215 (262)
T ss_pred             cCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCH---HHHHHH--------HhccCCCCCC------
Confidence            57888999999988889999999999999999999999997543211   111110        0100000000      


Q ss_pred             ccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          280 NSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                                  +......+.+++.+||+.+|++||+     +.++++
T Consensus       216 ------------~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         216 ------------PNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             ------------CcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence                        0122446789999999999999999     555554

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.98  E-value=7e-32  Score=245.22  Aligned_cols=215  Identities=25%  Similarity=0.310  Sum_probs=167.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcC-CCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNIC-HRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h~niv~l-------------  134 (356)
                      ++|.+.+.||+|+||.||+|....+++.||+|++....   ......+..|+.++++++ ||||+++             
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            46899999999999999999999899999999986532   233456788999999999 9999988             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.+++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++........
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~---~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~  157 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKG---IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSS  157 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHeEECCCCCEEecCCccccccCCccc
Confidence                                    447889999999999999   99999999999999999999999999986543221


Q ss_pred             CC----------------ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHH
Q 039228          191 PT----------------QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       191 ~~----------------~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~  254 (356)
                      ..                ........++..|+|||......++.++|+||||++++++++|..||.....    ....  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~--  231 (280)
T cd05581         158 PESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE----YLTF--  231 (280)
T ss_pred             cccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH----HHHH--
Confidence            10                1223345678899999999888899999999999999999999999974321    1000  


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh----HHHHH
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV----PNAVH  322 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~----~~vl~  322 (356)
                             ..+.....  ..                  .......+.+++.+||+.+|.+||++    .+++.
T Consensus       232 -------~~~~~~~~--~~------------------~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         232 -------QKILKLEY--SF------------------PPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             -------HHHHhcCC--CC------------------CCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence                   00000000  00                  00223457899999999999999999    66654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.98  E-value=2.8e-34  Score=250.05  Aligned_cols=212  Identities=21%  Similarity=0.293  Sum_probs=171.0

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHHH-----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI-----------------  135 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~-----------------  135 (356)
                      -|.++++||+|+||.||+|.++.+|+.+|||.+...  .+.++++.|+.+|++.+.|++|+++                 
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCG  111 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCG  111 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcC
Confidence            377889999999999999999999999999998754  3468899999999999999999983                 


Q ss_pred             ---------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          136 ---------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       136 ---------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                           .++.+.+.||+|||...   -||||||..|||++.+|..||+|||.|..+..    +..
T Consensus       112 AGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~---KIHRDIKAGNILLNT~G~AKLADFGVAGQLTD----TMA  184 (502)
T KOG0574|consen  112 AGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLK---KIHRDIKAGNILLNTDGIAKLADFGVAGQLTD----TMA  184 (502)
T ss_pred             CCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHH---HHHhhcccccEEEcccchhhhhhccccchhhh----hHH
Confidence                                 26778899999999887   89999999999999999999999999976543    234


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ..+.+.||+.|||||++..-.|+.++||||||++..||..|++||...-.-.    ..  ..+|.+.        .+.  
T Consensus       185 KRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMR----AI--FMIPT~P--------PPT--  248 (502)
T KOG0574|consen  185 KRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMR----AI--FMIPTKP--------PPT--  248 (502)
T ss_pred             hhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccc----ee--EeccCCC--------CCC--
Confidence            4567899999999999999999999999999999999999999996422110    00  0011100        000  


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                    ...++.-...+-+++..||-.+|++|-|+.++++.
T Consensus       249 --------------F~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  249 --------------FKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             --------------CCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence                          01122344467789999999999999999998864

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.98  E-value=7.5e-32  Score=245.49  Aligned_cols=203  Identities=23%  Similarity=0.232  Sum_probs=154.2

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ||+|+||+||+|.+..+++.||+|.+....   ......+..|+.+++.++||||+++                      
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            699999999999999899999999986432   2233456789999999999999987                      


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||.+......     ....
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~-----~~~~  152 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRR---IVYRDLKPENVLLDDHGNVRISDLGLAVELKGG-----KKIK  152 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEECCCCCEEEccCcchhhhccC-----Cccc
Confidence                             346789999999999999   999999999999999999999999998765321     1122


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...++..|++||++.+..++.++||||||+++|+|++|+.||....... ............          ....    
T Consensus       153 ~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~----------~~~~----  217 (277)
T cd05577         153 GRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKV-EKEELKRRTLEM----------AVEY----  217 (277)
T ss_pred             cccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccc-cHHHHHhccccc----------cccC----
Confidence            3456788999999988889999999999999999999999996432211 111111100000          0000    


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPN  319 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~  319 (356)
                                    .......+.+++.+||+.||.+||++.+
T Consensus       218 --------------~~~~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         218 --------------PDKFSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             --------------CccCCHHHHHHHHHHccCChhHccCCCc
Confidence                          0022335689999999999999994444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.98  E-value=2.5e-33  Score=259.69  Aligned_cols=158  Identities=27%  Similarity=0.383  Sum_probs=139.1

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------------
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------------  134 (356)
                      .++||+|.||+||-|.++.+|+.||||++.+..  ......+.+|+.+|+++.||.||.+                    
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            358999999999999999999999999997543  3445678999999999999999986                    


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC---CceEEcccccccccccCCCCCc
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND---LFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                        ..++.||+.||.|||.++   |+|+||||+|||+.+.   -.+||+|||+|+++++.     
T Consensus       649 MLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~kn---IvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk-----  720 (888)
T KOG4236|consen  649 MLEMILSSEKGRLPERITKFLVTQILVALRYLHFKN---IVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK-----  720 (888)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc---eeeccCCchheeeccCCCCCceeeccccceeecchh-----
Confidence                              236779999999999999   9999999999999643   36899999999987653     


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      .....++||+.|+|||++.+..|...-|+||.||++|.-++|..||++.
T Consensus       721 sFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd  769 (888)
T KOG4236|consen  721 SFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED  769 (888)
T ss_pred             hhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc
Confidence            3445689999999999999999999999999999999999999999753

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-31  Score=259.54  Aligned_cols=220  Identities=22%  Similarity=0.353  Sum_probs=176.8

Q ss_pred             CCccccceecCceEEEEEEECCC----CeEEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .+..++||+|+||+||+|.+-..    +.+||+|++... ......+++.|+-+|.+++|||++++              
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq  777 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQ  777 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHH
Confidence            45567899999999999998543    357899998643 34456789999999999999999998              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.|+.||++|+.|||.+.   +|||||...|||+.....+||.|||+++.+......
T Consensus       778 ~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qr---lVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~e  854 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQR---LVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKE  854 (1177)
T ss_pred             hcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcc---hhhhhhhhhheeecCCCeEEEEecchhhccCccccc
Confidence                                   458899999999999998   999999999999999999999999999987654432


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                      ..  .....-.+-|||-|.+....|+.++|||||||++||++| |..|+++...++              +.+++.... 
T Consensus       855 y~--~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~e--------------I~dlle~ge-  917 (1177)
T KOG1025|consen  855 YS--APGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEE--------------IPDLLEKGE-  917 (1177)
T ss_pred             cc--ccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHH--------------hhHHHhccc-
Confidence            21  122233567999999999999999999999999999999 999987654322              112221111 


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                                       ....++.|...+.-++.+||..|++.||+++++...+.+....
T Consensus       918 -----------------RLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  918 -----------------RLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             -----------------cCCCCCCccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence                             1223447888999999999999999999999999998887654

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=4.7e-33  Score=237.02  Aligned_cols=169  Identities=27%  Similarity=0.353  Sum_probs=142.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeec--cCccchHHHHHHHHHHhhcCCCChHHHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI--QCQGASKSFMAECKALKNICHRNLVRFIS------------  136 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~------------  136 (356)
                      .+.|.-..+||+|.||.||+|+.+.+++.||+|++-.  +........++|+++|..|+|+|++.++.            
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~   95 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRD   95 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccc
Confidence            3457778899999999999999999999999987632  23344456789999999999999998733            


Q ss_pred             ---------------------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          137 ---------------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       137 ---------------------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                       +..++..||.|+|...   |+|||+||.|+||+.+|.+||+|||+++
T Consensus        96 r~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~k---ilHRDmKaaNvLIt~dgilklADFGlar  172 (376)
T KOG0669|consen   96 RATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNK---ILHRDMKAANVLITKDGILKLADFGLAR  172 (376)
T ss_pred             cceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhh---HHhhcccHhhEEEcCCceEEeecccccc
Confidence                                             4556899999999998   9999999999999999999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      .+....+.........+-|+.|.+||.+.+. .|+++.|||.-||++.||+||.+-+.+.
T Consensus       173 ~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn  232 (376)
T KOG0669|consen  173 AFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN  232 (376)
T ss_pred             ceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC
Confidence            7766555444445556679999999998874 6899999999999999999999988653

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.97  E-value=3.2e-31  Score=242.64  Aligned_cols=220  Identities=20%  Similarity=0.183  Sum_probs=164.0

Q ss_pred             CCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccC----ccchHHHHHHHHHHhhc-CCCChHHH----------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQC----QGASKSFMAECKALKNI-CHRNLVRF----------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l----------  134 (356)
                      +|++.+.||+|+||.||++...   .++..||||.+....    ....+.+..|+.++.++ +||||+++          
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            4788899999999999999864   356889999986432    22345678899999999 59999987          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.....
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~---~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  157 (288)
T cd05583          81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLG---IIYRDIKLENILLDSEGHVVLTDFGLSKEFLA  157 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHeEECCCCCEEEEECcccccccc
Confidence                                       336779999999999998   99999999999999999999999999876533


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCC--CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSE--VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ..   ........++..|++||...+..  .+.++|+||||+++|+|++|..||...... ..........         
T Consensus       158 ~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~-~~~~~~~~~~---------  224 (288)
T cd05583         158 EE---EERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQ-NSQSEISRRI---------  224 (288)
T ss_pred             cc---ccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCccc-chHHHHHHHH---------
Confidence            21   11122345788999999987655  778999999999999999999998632111 1111111110         


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                         ......                ........+.+++.+||+.||++|||+.++.+.|+..
T Consensus       225 ---~~~~~~----------------~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         225 ---LKSKPP----------------FPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             ---HccCCC----------------CCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence               000000                0012334578899999999999999999888877553

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.97  E-value=6.4e-31  Score=236.86  Aligned_cols=210  Identities=20%  Similarity=0.197  Sum_probs=159.0

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-----ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      +|.+.+.||+|+||.||++.+..++..+++|+++...     ......+..|+.+++.++||||+++             
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            4888999999999999999998776777777765321     2233456789999999999999987             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.+++.||.|||+.+   ++|+||+|+||++++ +.++|+|||++....
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---i~h~~l~~~nili~~-~~~~l~d~g~~~~~~  156 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRR---ILHRDLKAKNIFLKN-NLLKIGDFGVSRLLM  156 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcC---ccccCCChhheEeec-CCEeecccCceeecC
Confidence                                        236678999999999999   999999999999985 569999999987653


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...    .......++..|+|||...+..++.++|+||||+++|+|++|..||....     .........         
T Consensus       157 ~~~----~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~-----~~~~~~~~~---------  218 (260)
T cd08222         157 GSC----DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN-----FLSVVLRIV---------  218 (260)
T ss_pred             CCc----ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-----HHHHHHHHH---------
Confidence            321    12223557888999999988888999999999999999999999986321     111111100         


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                         .....               .........+.+++.+||..+|++||++.++++
T Consensus       219 ---~~~~~---------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         219 ---EGPTP---------------SLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             ---cCCCC---------------CCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence               00000               001134456789999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=3.6e-31  Score=239.93  Aligned_cols=211  Identities=18%  Similarity=0.174  Sum_probs=157.2

Q ss_pred             HHhhcCCCCccccc--eecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhh-cCCCChHHH---------
Q 039228           67 LLKATDGFPLINLI--GVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKN-ICHRNLVRF---------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~l--g~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l---------  134 (356)
                      .....++|.+.+.+  |+|+||.||++....++..+|+|.+........     |+..... .+||||+++         
T Consensus         9 ~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~~~~   83 (267)
T PHA03390          9 LVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTTLKG   83 (267)
T ss_pred             HHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEecCCe
Confidence            33445677777776  999999999999999999999999874422211     2222221 269999876         


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFR  185 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~  185 (356)
                                                  ..++.|++.||.|||+.+   ++||||+|+||+++.++ .++|+|||++...
T Consensus        84 ~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~  160 (267)
T PHA03390         84 HVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHN---IIHNDIKLENVLYDRAKDRIYLCDYGLCKII  160 (267)
T ss_pred             eEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEeCCCCeEEEecCccceec
Confidence                                        458899999999999999   99999999999999888 9999999998754


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ...        ....++..|+|||++.+..++.++||||||+++|+|++|..||............+.... ..      
T Consensus       161 ~~~--------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~------  225 (267)
T PHA03390        161 GTP--------SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQ-QK------  225 (267)
T ss_pred             CCC--------ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhh-cc------
Confidence            321        124578899999999988899999999999999999999999974433322222221111 00      


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-hHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-VPNAVH  322 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-~~~vl~  322 (356)
                        ..    .                ........+.+++.+||+.+|.+||+ ++++++
T Consensus       226 --~~----~----------------~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        226 --KL----P----------------FIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             --cC----C----------------cccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence              00    0                00123345789999999999999996 688874

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.1e-31  Score=240.01  Aligned_cols=207  Identities=19%  Similarity=0.155  Sum_probs=153.5

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccCcc---chHHHHHHHHH-HhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---ASKSFMAECKA-LKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~-l~~l~h~niv~l-------------------  134 (356)
                      +.||.|+||.||+|....+++.||+|.+......   ....+..|..+ ....+|+|++++                   
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            5689999999999999888999999998644221   12234455444 445689999987                   


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                        ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.....        .
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~--------~  150 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRG---IIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE--------N  150 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEECCCCcEEEeecccceeccc--------c
Confidence                              347889999999999998   99999999999999999999999999874322        2


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....++..|++||.+.+..++.++||||||+++|+|++|..||.....     .......        ...... ..   
T Consensus       151 ~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~~~~--------~~~~~~-~~---  213 (260)
T cd05611         151 KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP-----DAVFDNI--------LSRRIN-WP---  213 (260)
T ss_pred             ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHH--------HhcccC-CC---
Confidence            234578889999999888889999999999999999999999964221     1111000        000000 00   


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                                  ......+...+.+++.+||+.+|++||++.++.+.|
T Consensus       214 ------------~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l  249 (260)
T cd05611         214 ------------EEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIK  249 (260)
T ss_pred             ------------CcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence                        000012345678999999999999999887665544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=5e-31  Score=240.39  Aligned_cols=205  Identities=19%  Similarity=0.207  Sum_probs=150.8

Q ss_pred             cceecCceEEEEEEECCCCeEEEEEEeeccCcc---chHHHHHHH---HHHhhcCCCChHHH------------------
Q 039228           79 LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---ASKSFMAEC---KALKNICHRNLVRF------------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~---~~l~~l~h~niv~l------------------  134 (356)
                      .||+|+||.||+|.+..+++.||+|.+......   ....+..|.   ..++...||||+++                  
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999999988999999998654221   112233443   34455679999865                  


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++......      .
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~------~  151 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKK------K  151 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCCCCHHHEEECCCCCEEEccCcCccccCcc------C
Confidence                               447889999999999999   999999999999999999999999998754321      1


Q ss_pred             CCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          196 SNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      .....|+..|+|||++.++ .++.++||||+|+++|+|++|+.||........  .........      ....+.    
T Consensus       152 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~--~~~~~~~~~------~~~~~~----  219 (278)
T cd05606         152 PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--HEIDRMTLT------MAVELP----  219 (278)
T ss_pred             CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccch--HHHHHHhhc------cCCCCC----
Confidence            1234678999999998754 688999999999999999999999975322111  110000000      000000    


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                                        ......+.+++.+|+..+|.+||     ++.++++
T Consensus       220 ------------------~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         220 ------------------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             ------------------CcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence                              01234678999999999999999     8888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=217.10  Aligned_cols=239  Identities=21%  Similarity=0.223  Sum_probs=166.5

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .|...++||+|.||+||+|+...+++.||+|.+....  .......++|+-+|+.++|.|||++                
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            4666789999999999999999999999999987543  3345678999999999999999998                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.|+++||.|+|+++   +.|||+||.|.||+.+|++||+|||+++.++...    
T Consensus        83 cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshn---vlhrdlkpqnllin~ngelkladfglarafgipv----  155 (292)
T KOG0662|consen   83 CDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHN---VLHRDLKPQNLLINRNGELKLADFGLARAFGIPV----  155 (292)
T ss_pred             hhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhh---hhhccCCcceEEeccCCcEEecccchhhhcCCce----
Confidence                                 236678999999999999   9999999999999999999999999998765322    


Q ss_pred             cCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ......+-|..|.+|.++.+.+ |++..|+||-||++.|+.. |++.|.+.. -+..+....+..-...-.++-.-.-.+
T Consensus       156 rcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~d-vddqlkrif~~lg~p~ed~wps~t~lp  234 (292)
T KOG0662|consen  156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND-VDDQLKRIFRLLGTPTEDQWPSMTKLP  234 (292)
T ss_pred             EeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCc-HHHHHHHHHHHhCCCccccCCccccCC
Confidence            2333456699999999998755 8889999999999999988 566565432 222333333332211111111111111


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ++..-+.. +.  .-.|.+..+.....=.+++.+.+.-+|..|.+++..++
T Consensus       235 dyk~yp~y-pa--ttswsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  235 DYKPYPIY-PA--TTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             CCcccCCc-cc--cchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            11100000 00  00011111222223346777777889999999988765

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=6.3e-31  Score=240.90  Aligned_cols=215  Identities=22%  Similarity=0.249  Sum_probs=158.4

Q ss_pred             CCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccC----ccchHHHHHHHHHHhhc-CCCChHHH----------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQC----QGASKSFMAECKALKNI-CHRNLVRF----------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l----------  134 (356)
                      +|++.+.||.|+||.||.|...   .++..||+|++....    ....+.+..|+.++.++ +|+||+++          
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            4788999999999999999874   367899999987432    22345678899999999 58999987          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.|++.||.|||+.+   ++||||+|+||+++.++.++|+|||++.....
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~---i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  157 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFHE  157 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeEECCCCCEEEeeCccceeccc
Confidence                                       235668999999999999   99999999999999999999999999976533


Q ss_pred             CCCCCccCCCCccccccccchhhhcCC--CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGS--EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ..   ........|+..|+|||.+.+.  .++.++||||||+++|+|++|..||...... ........           
T Consensus       158 ~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-~~~~~~~~-----------  222 (290)
T cd05613         158 DE---VERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEK-NSQAEISR-----------  222 (290)
T ss_pred             cc---ccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCcc-ccHHHHHH-----------
Confidence            21   1122235678899999998753  4678899999999999999999998632111 11111111           


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                       ..+.....                .+......+.+++.+||+.||++||     ++.+++.
T Consensus       223 -~~~~~~~~----------------~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         223 -RILKSEPP----------------YPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             -HhhccCCC----------------CCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence             11110000                0002233568999999999999998     5555543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-31  Score=254.94  Aligned_cols=206  Identities=21%  Similarity=0.191  Sum_probs=163.0

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhh-cCCCChHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKN-ICHRNLVRF--------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l--------------  134 (356)
                      .++.|.+...+|.|+|+.|-.+.+..+++..++|++.....    ...+|+.++.. -+||||+++              
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~----~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~  395 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRAD----DNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVM  395 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheecccccc----ccccccchhhhhcCCCcceeecceecCCceeeeee
Confidence            36778999999999999999999999999999999975522    22346655444 469999987              


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe-CCCCceEEcccccccccccCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL-DNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll-~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                            ..|+.+|+.|+.|||.+|   +|||||||+|||+ ++.++++|+|||.++.....   
T Consensus       396 e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~g---vvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~---  469 (612)
T KOG0603|consen  396 ELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQG---VVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS---  469 (612)
T ss_pred             hhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcC---eeecCCChhheeecCCCCcEEEEEechhhhCchh---
Confidence                                  248899999999999999   9999999999999 69999999999999865433   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                          ....+-|..|.|||++....|+.++|+||||++||+|++|+.||.....+ ..+..   ....+...         
T Consensus       470 ----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~ei~~---~i~~~~~s---------  532 (612)
T KOG0603|consen  470 ----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-IEIHT---RIQMPKFS---------  532 (612)
T ss_pred             ----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-HHHHH---hhcCCccc---------
Confidence                22345588899999999999999999999999999999999999754433 11111   11111111         


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                           ........+|+.+||+.||.+||+|.++...
T Consensus       533 ---------------------~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  533 ---------------------ECVSDEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             ---------------------cccCHHHHHHHHHhccCChhhCcChhhhccC
Confidence                                 1333456799999999999999999998753

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=7.7e-32  Score=234.65  Aligned_cols=215  Identities=18%  Similarity=0.160  Sum_probs=163.6

Q ss_pred             hcCCCCcc-ccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           70 ATDGFPLI-NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      .+++|.+. ++||-|-.|.|-.+..+.|++.+|+|++..     .....+|+++.-.. .|||||.+             
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-----s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc  133 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-----SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKC  133 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-----CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence            46778764 579999999999999999999999999752     24566788876665 49999987             


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC---CCCceEEccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD---NDLFAHIGDFEL  181 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~---~~~~~kl~Dfg~  181 (356)
                                                    -.|..||+.|+.|||+.+   |.||||||+|+|..   .+..+||+|||+
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~n---IAHRDlKpENLLyt~t~~na~lKLtDfGF  210 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMN---IAHRDLKPENLLYTTTSPNAPLKLTDFGF  210 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcc---hhhccCChhheeeecCCCCcceEeccccc
Confidence                                          348889999999999999   99999999999996   456799999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCch
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRV  261 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      |+.....     ......+-|+.|.|||++...+|+...|+||+||++|-|++|.+||-..-.  ..+..-.+..+    
T Consensus       211 AK~t~~~-----~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg--~aispgMk~rI----  279 (400)
T KOG0604|consen  211 AKETQEP-----GDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG--LAISPGMKRRI----  279 (400)
T ss_pred             ccccCCC-----ccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCC--ccCChhHHhHh----
Confidence            9865432     223346679999999999999999999999999999999999999964322  11111111000    


Q ss_pred             HHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          262 MDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       262 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                             ..+.+.        +-+++|    .+..+...++|...|+.+|.+|.|+.+++.
T Consensus       280 -------~~gqy~--------FP~pEW----s~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  280 -------RTGQYE--------FPEPEW----SCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             -------hccCcc--------CCChhH----hHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence                   001100        111111    155566788999999999999999999875

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.97  E-value=4.1e-30  Score=229.83  Aligned_cols=200  Identities=25%  Similarity=0.233  Sum_probs=156.7

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      ||.|+||.||++....+++.+|+|.+.....   .....+..|+.+++.++||||+++                      
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            6999999999999988889999999875432   234578899999999999999997                      


Q ss_pred             ---------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCc
Q 039228          135 ---------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV  199 (356)
Q Consensus       135 ---------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  199 (356)
                                     ..++.|++.||.|||+.+   ++|+||+|+||+++.++.++|+|||++.......    ......
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~---~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~  153 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSLG---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEG----SRTNTF  153 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcceEEEcCCCcEEEeecCcceecccCC----CcccCC
Confidence                           347788999999999998   9999999999999999999999999997653321    122345


Q ss_pred             cccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccccc
Q 039228          200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGT  279 (356)
Q Consensus       200 ~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  279 (356)
                      .++..|++||...+...+.++|+||||+++|++++|..||.....     .......        ....+  ..      
T Consensus       154 ~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~-----~~~~~~~--------~~~~~--~~------  212 (250)
T cd05123         154 CGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR-----KEIYEKI--------LKDPL--RF------  212 (250)
T ss_pred             cCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHH--------hcCCC--CC------
Confidence            678899999999888889999999999999999999999964221     1111110        00000  00      


Q ss_pred             ccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHH
Q 039228          280 NSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPN  319 (356)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~  319 (356)
                                  +......+.+++.+||..||++||++.+
T Consensus       213 ------------~~~~~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         213 ------------PEFLSPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             ------------CCCCCHHHHHHHHHHhcCCHhhCCCccc
Confidence                        0022346789999999999999999954

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.7e-31  Score=263.75  Aligned_cols=170  Identities=24%  Similarity=0.289  Sum_probs=147.5

Q ss_pred             HHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeec---cCccchHHHHHHHHHHhhcCCCChHHH-------
Q 039228           65 ESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI---QCQGASKSFMAECKALKNICHRNLVRF-------  134 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l-------  134 (356)
                      .++....++|.++++||+|+||.|.+++.+.+++.||+|++++   .......-|..|-.+|..-+.+-|+.+       
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            4555667899999999999999999999999999999999986   234445678889999998888888877       


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ..++.+|+.||.-||+.|   +|||||||+|||||..|++||+|||.+..
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mg---yVHRDiKPDNvLld~~GHikLADFGsClk  224 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMG---YVHRDIKPDNVLLDKSGHIKLADFGSCLK  224 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcc---ceeccCCcceeEecccCcEeeccchhHHh
Confidence                                          236778999999999999   99999999999999999999999999987


Q ss_pred             cccCCCCCccCCCCccccccccchhhhc----C-CCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDL----G-SEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~-~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                      +...+   .......+|||.|.+||++.    + +.|+..+|+||+||++|||+.|..||.
T Consensus       225 m~~dG---~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFY  282 (1317)
T KOG0612|consen  225 MDADG---TVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFY  282 (1317)
T ss_pred             cCCCC---cEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcch
Confidence            76544   34455688999999999985    3 568999999999999999999999995

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.97  E-value=2.9e-30  Score=255.86  Aligned_cols=233  Identities=19%  Similarity=0.127  Sum_probs=143.8

Q ss_pred             hcCCCCccccceecCceEEEEEEECCC----CeEEEEEEeeccCccch---HHHHHH-----H-----------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQCQGAS---KSFMAE-----C-----------------  120 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~----~~~vavK~~~~~~~~~~---~~~~~E-----~-----------------  120 (356)
                      ..++|.+.+.||+|+||.||+|++..+    +..||+|.+........   ..+...     .                 
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDE  209 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCc
Confidence            567899999999999999999999988    89999998753221110   000000     0                 


Q ss_pred             --------------HHHhhcCCCChH--------------------HHHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCe
Q 039228          121 --------------KALKNICHRNLV--------------------RFISIAIDVASALDYLHHHCQELILHCDPKPSNV  166 (356)
Q Consensus       121 --------------~~l~~l~h~niv--------------------~l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NI  166 (356)
                                    ..+..-.++..+                    .+..++.|++.||.|||+.+   |+||||||+||
T Consensus       210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~g---IiHRDLKP~NI  286 (566)
T PLN03225        210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTG---IVHRDVKPQNI  286 (566)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCC---EEeCcCCHHHE
Confidence                          000000011000                    01357889999999999999   99999999999


Q ss_pred             EeCC-CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCC----------------------CCCCccchH
Q 039228          167 LLDN-DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS----------------------EVSTNGDAY  223 (356)
Q Consensus       167 ll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----------------------~~~~~sDiw  223 (356)
                      |++. ++.+||+|||+++.+.....   .......+++.|+|||.+...                      .++.++|||
T Consensus       287 Ll~~~~~~~KL~DFGlA~~l~~~~~---~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVw  363 (566)
T PLN03225        287 IFSEGSGSFKIIDLGAAADLRVGIN---YIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIY  363 (566)
T ss_pred             EEeCCCCcEEEEeCCCccccccccc---cCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccH
Confidence            9985 68999999999986543221   223346788999999965432                      233456999


Q ss_pred             hHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHH
Q 039228          224 NYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVR  301 (356)
Q Consensus       224 SlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  301 (356)
                      ||||++|||+++..|++.      ....+.....  ......+.... .....      ......  ............+
T Consensus       364 SlGviL~el~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~-~~~~~------~~~~~~--~~~~d~~~~~~~d  428 (566)
T PLN03225        364 SAGLIFLQMAFPNLRSDS------NLIQFNRQLKRNDYDLVAWRKLV-EPRAS------PDLRRG--FEVLDLDGGAGWE  428 (566)
T ss_pred             HHHHHHHHHHhCcCCCch------HHHHHHHHHHhcCCcHHHHHHhh-ccccc------hhhhhh--hhhccccchHHHH
Confidence            999999999997776532      1111111110  00111110000 00000      000000  0000001123458


Q ss_pred             HHHhhcCCCcCCCCChHHHHHH
Q 039228          302 IGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       302 l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      |+.+||+.||.+|||+.++++.
T Consensus       429 Li~~mL~~dP~kR~ta~e~L~H  450 (566)
T PLN03225        429 LLKSMMRFKGRQRISAKAALAH  450 (566)
T ss_pred             HHHHHccCCcccCCCHHHHhCC
Confidence            9999999999999999999873

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=2.5e-30  Score=261.99  Aligned_cols=110  Identities=33%  Similarity=0.470  Sum_probs=98.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||||++....   ......+..|+.++..++||||+++             
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            467999999999999999999999999999999987432   2233578889999999999999986             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                              +.++.||+.||.|||..+   ||||||||+|||++.++.++|+|||+++
T Consensus        83 mEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~g---IiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          83 MEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHG---IIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence                                    457889999999999998   9999999999999999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=4.7e-31  Score=243.69  Aligned_cols=164  Identities=25%  Similarity=0.309  Sum_probs=143.4

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHHHH----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRFIS----------  136 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~----------  136 (356)
                      ...+++++..||-||||.|-++..+.....+|+|++++.   .....+.+..|-.+|...+.|.||+++.          
T Consensus       418 ~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYm  497 (732)
T KOG0614|consen  418 KLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYM  497 (732)
T ss_pred             chhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhh
Confidence            445788888999999999999998876666899988643   4555677899999999999999999833          


Q ss_pred             ---------------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          137 ---------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       137 ---------------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                                 ++..++.|++|||.++   ||+|||||+|+++|.+|.+||.|||+|+.+....
T Consensus       498 LmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~---iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614|consen  498 LMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKG---IIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             hHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcC---ceeccCChhheeeccCCceEEeehhhHHHhccCC
Confidence                                       4455889999999999   9999999999999999999999999999876543


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                           ..-.++||+.|.|||++.+...+.++|.||||+++|||++|.+||..
T Consensus       575 -----KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~  621 (732)
T KOG0614|consen  575 -----KTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSG  621 (732)
T ss_pred             -----ceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCC
Confidence                 23358999999999999999999999999999999999999999974

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.5e-30  Score=218.85  Aligned_cols=241  Identities=19%  Similarity=0.244  Sum_probs=171.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRFIS------------  136 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~------------  136 (356)
                      ..++|++.+.+|+|.+++||.|....+++.++||+++..   ..+.+.+|+.+|+.|. ||||+++++            
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV---kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPV---KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechH---HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            357899999999999999999999888999999999733   3567889999999998 999999833            


Q ss_pred             ------------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEcccccccccccCCCC
Q 039228          137 ------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       137 ------------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                              ++.+++.||.|+|+.|   |+|||+||.|++||. .-.++|+|+|+|.+...... 
T Consensus       113 iFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~G---ImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~e-  188 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMG---IMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKE-  188 (338)
T ss_pred             HhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcC---cccccCCcceeeechhhceeeeeecchHhhcCCCce-
Confidence                                    5668999999999999   999999999999994 56799999999987654332 


Q ss_pred             CccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh--
Q 039228          192 TQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV--  268 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  268 (356)
                          -+..+.+..|..||.+.. ..|+..-|+|||||++..|+..+.||....++...+...+.-.-.+.+...+...  
T Consensus       189 ----YnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i  264 (338)
T KOG0668|consen  189 ----YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQI  264 (338)
T ss_pred             ----eeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHcc
Confidence                223445677889998865 5578889999999999999999999965444444444444333333333322211  


Q ss_pred             -hcccccccc--ccccchhhhhchhhHHH-HHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 -LLNDNKVLA--GTNSNMLRKTKMNSRLE-CLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 -l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       +.+.+...-  ..-..|. .......+. ...+.++++.+.|..|-.+|+|+.|.+.
T Consensus       265 ~Ldp~~~~i~~~~~rk~w~-~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  265 DLDPQFEDILGRHSRKPWS-RFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             CCChhHhhHhhccccccHH-HhCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence             111110000  0000000 000001111 1235678999999999999999999875

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-30  Score=234.21  Aligned_cols=165  Identities=25%  Similarity=0.301  Sum_probs=138.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcC-CCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNIC-HRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h~niv~l------------  134 (356)
                      ..+|..+.+||+|+||.|.+|..+.+.+.+|||++++.-   ..+.+--..|-++|.-.. -|.++++            
T Consensus       348 ~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyF  427 (683)
T KOG0696|consen  348 ATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYF  427 (683)
T ss_pred             ecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheee
Confidence            456999999999999999999999999999999997542   222333445666666553 5677766            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.+|+.||-+||++|   ||+||||.+|||+|.+|++||+|||+++.--.  
T Consensus       428 VMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kg---IiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~--  502 (683)
T KOG0696|consen  428 VMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIF--  502 (683)
T ss_pred             EEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCC---eeeeeccccceEeccCCceEeeeccccccccc--
Confidence                                     347788999999999999   99999999999999999999999999974221  


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                        .......++||+.|+|||++...+|+..+|.|||||+||||+.|++||++.
T Consensus       503 --~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe  553 (683)
T KOG0696|consen  503 --DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  553 (683)
T ss_pred             --CCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC
Confidence              123445689999999999999999999999999999999999999999854

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=6.2e-30  Score=224.54  Aligned_cols=249  Identities=17%  Similarity=0.192  Sum_probs=173.7

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHHHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRFIS--------------------  136 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~--------------------  136 (356)
                      +.||+|+|+.|-.++...++..||||++.+.......++.+|+.++.+.+ |+||++++.                    
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGpl  163 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPL  163 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchH
Confidence            57999999999999999999999999998887777889999999999886 999999833                    


Q ss_pred             -----------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC---ceEEcccccccccccCCC---CCc
Q 039228          137 -----------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL---FAHIGDFELARFRQEVSN---PTQ  193 (356)
Q Consensus       137 -----------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~---~~kl~Dfg~a~~~~~~~~---~~~  193 (356)
                                       +..+|+.||.|||.+|   |.||||||+|||.....   -+||+||.+..-......   ..+
T Consensus       164 LshI~~~~~F~E~EAs~vvkdia~aLdFlH~kg---IAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spast  240 (463)
T KOG0607|consen  164 LSHIQKRKHFNEREASRVVKDIASALDFLHTKG---IAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPAST  240 (463)
T ss_pred             HHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcC---cccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCC
Confidence                             6778999999999999   99999999999996544   479999988754322211   223


Q ss_pred             cCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCch-HHHhhh
Q 039228          194 SSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRV-MDIVNL  267 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  267 (356)
                      ......+|+..|||||+..     ...|+.+.|.|||||++|-|+.|.+||.+....+..+.+-   ..-..- ..+...
T Consensus       241 P~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrG---e~Cr~CQ~~LFes  317 (463)
T KOG0607|consen  241 PELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRG---EVCRVCQNKLFES  317 (463)
T ss_pred             ccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCC---CccHHHHHHHHHH
Confidence            3345577889999999763     2358899999999999999999999998876654332110   000000 001111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH--HHHHhh--hhhccccccccCCcC
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH--DLQSVN--NILLPETVFKSLTNN  343 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~--~L~~i~--~~~~~~~~~~~~~~~  343 (356)
                      .-.+.++        +-++.|.    ....+-.+++...+..++.+|-++.+++.  ....+.  ..++.+..+...+++
T Consensus       318 IQEGkYe--------FPdkdWa----hIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~~~ekalptp~v~~r~~s~  385 (463)
T KOG0607|consen  318 IQEGKYE--------FPDKDWA----HISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRCAPEKALPTPQVLQRNSST  385 (463)
T ss_pred             HhccCCc--------CChhhhH----HhhHHHHHHHHHHHhccHHhhhhhhhccCCccccccchhccCCCCcccccCccc
Confidence            1111111        1122222    22334456777778899999999998887  223322  334555554444443


Q ss_pred             C
Q 039228          344 R  344 (356)
Q Consensus       344 ~  344 (356)
                      +
T Consensus       386 ~  386 (463)
T KOG0607|consen  386 M  386 (463)
T ss_pred             h
Confidence            3

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-29  Score=253.85  Aligned_cols=228  Identities=23%  Similarity=0.312  Sum_probs=173.1

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECC-------CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcC-CCChHHH--
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDL-------NRAVVAIKVLSIQCQ-GASKSFMAECKALKNIC-HRNLVRF--  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~l--  134 (356)
                      .++...++..+.+.||.|.||.|++|....       ....||||.++.... ...+.+..|+.+|+.+. |+||+.+  
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            344455666777899999999999998531       146899999874433 45577899999999985 9999987  


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCC
Q 039228          135 ---------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKP  163 (356)
Q Consensus       135 ---------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp  163 (356)
                                                                         +.++.||+.|++||++..   +|||||..
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~---~vHRDLAa  446 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVP---CVHRDLAA  446 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCC---ccchhhhh
Confidence                                                               347789999999999988   99999999


Q ss_pred             CCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCcc
Q 039228          164 SNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFM  242 (356)
Q Consensus       164 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~  242 (356)
                      .|||+..+..+||+|||+|+................ -...|||||.+....|+.++|||||||+||||+| |..||.+.
T Consensus       447 RNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~-LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~  525 (609)
T KOG0200|consen  447 RNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGT-LPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGI  525 (609)
T ss_pred             hhEEecCCCEEEEccccceeccCCCCceEecCCCCc-cceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCC
Confidence            999999999999999999985433222111111111 2455999999999999999999999999999999 88998642


Q ss_pred             ccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          243 FEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .. ..++.++            +.....                  +..+..|..++.++|..||+.+|++||++.++.+
T Consensus       526 ~~-~~~l~~~------------l~~G~r------------------~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~  574 (609)
T KOG0200|consen  526 PP-TEELLEF------------LKEGNR------------------MEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVE  574 (609)
T ss_pred             Cc-HHHHHHH------------HhcCCC------------------CCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence            10 1111111            111111                  1223367778899999999999999999999999


Q ss_pred             HHHHhh
Q 039228          323 DLQSVN  328 (356)
Q Consensus       323 ~L~~i~  328 (356)
                      .++...
T Consensus       575 ~~~~~l  580 (609)
T KOG0200|consen  575 FFEKHL  580 (609)
T ss_pred             HHHHHH
Confidence            999954

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-30  Score=233.15  Aligned_cols=239  Identities=20%  Similarity=0.222  Sum_probs=166.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCC--CC----hHHH---------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH--RN----LVRF---------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~n----iv~l---------  134 (356)
                      .+++|.+...+|+|.||.|-.+.+..++..||||+++... ...+...-|+++|+++.+  |+    +|++         
T Consensus        87 l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~-kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   87 LTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD-KYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             cccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH-HHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            4788999999999999999999999999999999987432 233556679999999842  21    1111         


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---------------
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---------------  170 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---------------  170 (356)
                                                   ..++.|++.+++|||+.+   ++|-||||+|||+-+               
T Consensus       166 iCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~k---l~HTDLKPENILfvss~~~~~~~~k~~~~~  242 (415)
T KOG0671|consen  166 ICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLK---LTHTDLKPENILFVSSEYFKTYNPKKKVCF  242 (415)
T ss_pred             eEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcc---eeecCCChheEEEeccceEEEeccCCccce
Confidence                                         347889999999999999   999999999999932               


Q ss_pred             -----CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccC
Q 039228          171 -----DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG  245 (356)
Q Consensus       171 -----~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~  245 (356)
                           +..++|+|||.|.+-.+..       ...+.|..|.|||++.+-+++..+||||+||||+|+.||...|....  
T Consensus       243 ~r~~ks~~I~vIDFGsAtf~~e~h-------s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe--  313 (415)
T KOG0671|consen  243 IRPLKSTAIKVIDFGSATFDHEHH-------STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHE--  313 (415)
T ss_pred             eccCCCcceEEEecCCcceeccCc-------ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCC--
Confidence                 3358999999998654322       34677999999999999999999999999999999999999987532  


Q ss_pred             CccHHHHHHH---hCCCchHHHh------hhh-hc--cccccc---cc-cccchhhhhchhhHHHHHHHHHHHHHhhcCC
Q 039228          246 DLNLHNFARM---AFPNRVMDIV------NLV-LL--NDNKVL---AG-TNSNMLRKTKMNSRLECLIFMVRIGAACSMG  309 (356)
Q Consensus       246 ~~~~~~~~~~---~~~~~~~~~~------~~~-l~--~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~  309 (356)
                      +.....+.+.   .+|..+..-.      ... +.  .....+   +. ....-+.. .+.....+...|.+|+.++|..
T Consensus       314 n~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~-~~~~~d~e~~~LfDLl~~mL~f  392 (415)
T KOG0671|consen  314 NLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKK-YMLQDDLEHVQLFDLLRRMLEF  392 (415)
T ss_pred             cHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHH-HhccCcHHHhHHHHHHHHHHcc
Confidence            2221122222   2222111111      000 00  000000   00 00001111 1122235566799999999999


Q ss_pred             CcCCCCChHHHHH
Q 039228          310 SSQDRMNVPNAVH  322 (356)
Q Consensus       310 dP~~RPs~~~vl~  322 (356)
                      ||.+|+|+.|++.
T Consensus       393 DP~~RiTl~EAL~  405 (415)
T KOG0671|consen  393 DPARRITLREALS  405 (415)
T ss_pred             CccccccHHHHhc
Confidence            9999999999875

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-30  Score=221.63  Aligned_cols=163  Identities=25%  Similarity=0.338  Sum_probs=137.5

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRFIS--------------  136 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~--------------  136 (356)
                      +.+--+.||-|+||.||.+.+..+|+.||+|.+...  +-...+++.+|+++|..++|.|++..++              
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            455567899999999999999999999999998633  2334578999999999999999998733              


Q ss_pred             ---------------------------HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          137 ---------------------------IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       137 ---------------------------i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                                 ++.||++||.|||+.+   |+||||||.|.|++++..+||+|||+++.-+...
T Consensus       134 V~TELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~---ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~  210 (449)
T KOG0664|consen  134 VLTELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTAN---ILHRDIKPGNLLVNSNCILKICDFGLARTWDQRD  210 (449)
T ss_pred             HHHHHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcc---hhhccCCCccEEeccCceEEecccccccccchhh
Confidence                                       5678999999999999   9999999999999999999999999998543322


Q ss_pred             CCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         .......+-|..|.|||.++|. .|+.+.||||.||++.|++..+..|..
T Consensus       211 ---~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQA  260 (449)
T KOG0664|consen  211 ---RLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQA  260 (449)
T ss_pred             ---hhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhc
Confidence               1222335568899999999885 589999999999999999999888863

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.96  E-value=6.5e-29  Score=219.90  Aligned_cols=202  Identities=26%  Similarity=0.271  Sum_probs=157.8

Q ss_pred             CceEEEEEEECCCCeEEEEEEeeccCccc-hHHHHHHHHHHhhcCCCChHHH----------------------------
Q 039228           84 SFDAVYQGVFDLNRAVVAIKVLSIQCQGA-SKSFMAECKALKNICHRNLVRF----------------------------  134 (356)
Q Consensus        84 ~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~niv~l----------------------------  134 (356)
                      +||.||+|.+..+++.+|+|++....... .+.+.+|+..+++++|+|++++                            
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999999888999999997654444 6789999999999999999987                            


Q ss_pred             ---------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccc
Q 039228          135 ---------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY  205 (356)
Q Consensus       135 ---------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y  205 (356)
                               +.++.+++.++.|||+.+   ++|+||+|+||+++.++.++|+|||.+.......     ......++..|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~-----~~~~~~~~~~~  152 (244)
T smart00220       81 RGRLSEDEARFYARQILSALEYLHSNG---IIHRDLKPENILLDEDGHVKLADFGLARQLDPGG-----LLTTFVGTPEY  152 (244)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHcC---eecCCcCHHHeEECCCCcEEEccccceeeecccc-----ccccccCCcCC
Confidence                     347788999999999998   9999999999999999999999999998654321     22335568889


Q ss_pred             cchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhh
Q 039228          206 TALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLR  285 (356)
Q Consensus       206 ~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  285 (356)
                      ++||...+..++.++|+||||+++++|++|..||....... ........            .......           
T Consensus       153 ~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~-~~~~~~~~------------~~~~~~~-----------  208 (244)
T smart00220      153 MAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLL-ELFKKIGK------------PKPPFPP-----------  208 (244)
T ss_pred             CCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHhc------------cCCCCcc-----------
Confidence            99999988889999999999999999999999986421111 11111100            0000000           


Q ss_pred             hhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          286 KTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       286 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                           ........+.+++.+||..+|++||++.++++
T Consensus       209 -----~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      209 -----PEWKISPEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             -----ccccCCHHHHHHHHHHccCCchhccCHHHHhh
Confidence                 00003346789999999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5e-31  Score=240.16  Aligned_cols=225  Identities=21%  Similarity=0.278  Sum_probs=167.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-------ccchHHHHHHHHHHhhcCCCChHHH--------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-------QGASKSFMAECKALKNICHRNLVRF--------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-------~~~~~~~~~E~~~l~~l~h~niv~l--------  134 (356)
                      ..++|-++..||+|||+.||+|.+...++.||+|+-....       ....+...+|.++.+.|+||.||++        
T Consensus       461 Ln~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDt  540 (775)
T KOG1151|consen  461 LNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDT  540 (775)
T ss_pred             hHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeecc
Confidence            3457889999999999999999998888999999975332       1223456789999999999999997        


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC---CCCceEEccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD---NDLFAHIGDFEL  181 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~---~~~~~kl~Dfg~  181 (356)
                                                    ..|+.||+.||.||.+.. +||||-||||.|||+-   ..|.+||+|||+
T Consensus       541 dsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEik-pPIIHYDLKPgNILLv~GtacGeIKITDFGL  619 (775)
T KOG1151|consen  541 DSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIK-PPIIHYDLKPGNILLVNGTACGEIKITDFGL  619 (775)
T ss_pred             ccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC-CCeeeeccCCccEEEecCcccceeEeeecch
Confidence                                          348899999999999984 7899999999999994   568999999999


Q ss_pred             ccccccCCCC---CccCCCCccccccccchhhhcCC----CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHH
Q 039228          182 ARFRQEVSNP---TQSSSNGVRRTIGYTALDYDLGS----EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       182 a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~----~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~  254 (356)
                      +++++.....   .........||.+|++||.+.-+    .++.++||||+||++|.++.|+.||.......    ....
T Consensus       620 SKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQ----dILq  695 (775)
T KOG1151|consen  620 SKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQ----DILQ  695 (775)
T ss_pred             hhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHH----HHHh
Confidence            9998665432   23345667899999999988643    47889999999999999999999996432211    1111


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..      .++...-...+.                 -+....+...+|.+||++.-++|.+..++..
T Consensus       696 eN------TIlkAtEVqFP~-----------------KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  696 EN------TILKATEVQFPP-----------------KPVVSSEAKAFIRRCLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             hh------chhcceeccCCC-----------------CCccCHHHHHHHHHHHHhhhhhhhhHHHHcc
Confidence            10      011110000000                 0122224468999999999999998777653

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.96  E-value=2.4e-29  Score=223.95  Aligned_cols=184  Identities=20%  Similarity=0.164  Sum_probs=140.7

Q ss_pred             cCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------------------
Q 039228           83 GSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------------------  134 (356)
Q Consensus        83 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------------------  134 (356)
                      |.+|.||++.+..+++.||+|.+....     .+..|...+....||||+++                            
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            889999999999999999999987542     23345555556679999987                            


Q ss_pred             ---------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccc
Q 039228          135 ---------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY  205 (356)
Q Consensus       135 ---------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y  205 (356)
                               ..++.|++.||.|||+.+   |+||||||+||+++.++.++++|||.+......       .....++..|
T Consensus        79 ~~~l~~~~~~~~~~ql~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~-------~~~~~~~~~y  148 (237)
T cd05576          79 FLNIPEECVKRWAAEMVVALDALHREG---IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS-------CDGEAVENMY  148 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHEEEcCCCCEEEecccchhccccc-------cccCCcCccc
Confidence                     347789999999999999   999999999999999999999999987654321       1123446779


Q ss_pred             cchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhh
Q 039228          206 TALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLR  285 (356)
Q Consensus       206 ~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  285 (356)
                      +|||...+..++.++|+||+|+++|||++|..|+........               ......+.               
T Consensus       149 ~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~~---------------~~~~~~~~---------------  198 (237)
T cd05576         149 CAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGIN---------------THTTLNIP---------------  198 (237)
T ss_pred             cCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhcc---------------cccccCCc---------------
Confidence            999999888899999999999999999999988753211000               00000000               


Q ss_pred             hhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH
Q 039228          286 KTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP  318 (356)
Q Consensus       286 ~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~  318 (356)
                             ......+.+++.+|++.||++||++.
T Consensus       199 -------~~~~~~~~~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         199 -------EWVSEEARSLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             -------ccCCHHHHHHHHHHccCCHHHhcCCC
Confidence                   01223567899999999999999973

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.96  E-value=7.7e-30  Score=211.56  Aligned_cols=181  Identities=22%  Similarity=0.276  Sum_probs=142.9

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc-CccchHHHHHHHHHHhh-cCCCChHHHH---------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKN-ICHRNLVRFI---------  135 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~-l~h~niv~l~---------  135 (356)
                      +....++..-+..||+|++|.|-+-++..+|+..|+|.+... .....+++++|+++..+ ...|.+|+++         
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdv  120 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDV  120 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccE
Confidence            334455667778899999999999999999999999999744 23445678889887554 5689999872         


Q ss_pred             -------------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          136 -------------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       136 -------------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                     .|+..+..||.|||++-  .+||||+||+||||+.+|.+|++|||.+-.
T Consensus       121 wIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~  198 (282)
T KOG0984|consen  121 WICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGY  198 (282)
T ss_pred             EEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEccccccee
Confidence                                           26778999999999953  599999999999999999999999999987


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcC----CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLG----SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~  254 (356)
                      +...-     ..+.-.|-..|||||.+..    ..|+.++||||||+++.||.+++.||+........+.+.+.
T Consensus       199 L~dSi-----Akt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVe  267 (282)
T KOG0984|consen  199 LVDSI-----AKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVE  267 (282)
T ss_pred             ehhhh-----HHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhc
Confidence            64322     1222345678999998753    36899999999999999999999999876555444444443

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.2e-29  Score=220.67  Aligned_cols=166  Identities=23%  Similarity=0.321  Sum_probs=142.5

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhc-CCCChHHH----------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNI-CHRNLVRF----------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l----------  134 (356)
                      ...++|.++.+||+|+|..|.+++++.|.+.+|+|+++++   ..++......|-.+..+. +||.+|-+          
T Consensus       247 l~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrl  326 (593)
T KOG0695|consen  247 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRL  326 (593)
T ss_pred             cccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceE
Confidence            3567899999999999999999999999999999999754   334455666777766654 68998876          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..+..+|..||.|||++|   ||+||||.+|+|+|..|++||+|+|.++..-.
T Consensus       327 ffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rg---iiyrdlkldnvlldaeghikltdygmcke~l~  403 (593)
T KOG0695|consen  327 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERG---IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLG  403 (593)
T ss_pred             EEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcC---eeeeeccccceEEccCCceeecccchhhcCCC
Confidence                                       235567999999999999   99999999999999999999999999985322


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      .    ......++||+.|.|||.+.+..|+..+|.|+|||+++||+.|+.||+-
T Consensus       404 ~----gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdi  453 (593)
T KOG0695|consen  404 P----GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDI  453 (593)
T ss_pred             C----CcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcce
Confidence            2    2344568999999999999999999999999999999999999999974

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-29  Score=227.97  Aligned_cols=231  Identities=20%  Similarity=0.289  Sum_probs=179.0

Q ss_pred             HHHHhhcCCCCccccceecCceEEEEEEECCC-----CeEEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH----
Q 039228           65 ESLLKATDGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF----  134 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l----  134 (356)
                      .++.....+++....+-+|.||.||.|.+.+.     .+.|-+|.++.. +......++.|.-.+..+.|||+.++    
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            45555667788889999999999999987643     244566666533 23345678899999999999999986    


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC
Q 039228          135 ------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL  172 (356)
Q Consensus       135 ------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~  172 (356)
                                                                ..++.|++.|++|||+++   +||.||...|++||+..
T Consensus       357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~---ViHkDiAaRNCvIdd~L  433 (563)
T KOG1024|consen  357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHG---VIHKDIAARNCVIDDQL  433 (563)
T ss_pred             eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcC---cccchhhhhcceehhhe
Confidence                                                      347789999999999999   99999999999999999


Q ss_pred             ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHH
Q 039228          173 FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       173 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~  251 (356)
                      .+||+|=.+++-+....-.  ......-.+..||+||.+.+..|+.++|+|||||++|||+| |+.|+.+..     -.+
T Consensus       434 qVkltDsaLSRDLFP~DYh--cLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeID-----PfE  506 (563)
T KOG1024|consen  434 QVKLTDSALSRDLFPGDYH--CLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEID-----PFE  506 (563)
T ss_pred             eEEeccchhccccCccccc--ccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccC-----HHH
Confidence            9999999999865433221  11122233667999999999999999999999999999999 999986432     112


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      +......+                           ....++.+|+.+|..+|.-||...|++||+++|++..|.+...++
T Consensus       507 m~~ylkdG---------------------------yRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~cLseF~~ql  559 (563)
T KOG1024|consen  507 MEHYLKDG---------------------------YRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVICLSEFHTQL  559 (563)
T ss_pred             HHHHHhcc---------------------------ceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHH
Confidence            11111111                           012233489999999999999999999999999999999987766


Q ss_pred             c
Q 039228          332 L  332 (356)
Q Consensus       332 ~  332 (356)
                      .
T Consensus       560 t  560 (563)
T KOG1024|consen  560 T  560 (563)
T ss_pred             h
Confidence            4

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-30  Score=249.60  Aligned_cols=208  Identities=25%  Similarity=0.293  Sum_probs=159.4

Q ss_pred             CCccccceecCce-EEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH-----------------
Q 039228           74 FPLINLIGVGSFD-AVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g-~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l-----------------  134 (356)
                      |.-.+++|.|..| .||+|...  ++.||||++-.   +...-..+|+..|+.-+ |||||++                 
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye--~R~VAVKrll~---e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC  585 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYE--GREVAVKRLLE---EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELC  585 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeC--CceehHHHHhh---HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHh
Confidence            4445678999887 57999987  78999999753   23345678999998775 9999997                 


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---C--CceEEcccccccccc
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---D--LFAHIGDFELARFRQ  186 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~--~~~kl~Dfg~a~~~~  186 (356)
                                             +.+..|++.||++||+.+   ||||||||.||||+.   +  ..++|+|||+++.+.
T Consensus       586 ~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~---iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~  662 (903)
T KOG1027|consen  586 ACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLK---IVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLA  662 (903)
T ss_pred             hhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcc---cccccCCCceEEEEccCCCcceeEEecccccccccC
Confidence                                   346788999999999998   999999999999975   2  578999999999887


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcC-CCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ........ ..+..||-+|+|||.+....-+.++||||+||++|+.++| ..||......+.++..-..     .+.   
T Consensus       663 ~~~sS~~r-~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~~-----~L~---  733 (903)
T KOG1027|consen  663 GGKSSFSR-LSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGNY-----TLV---  733 (903)
T ss_pred             CCcchhhc-ccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcCcc-----cee---
Confidence            66544333 5678899999999999998888899999999999999995 9999754333222111000     000   


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                        .+...                    .++  +..+||.+|++.+|..||++.+|+.
T Consensus       734 --~L~~~--------------------~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  734 --HLEPL--------------------PDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             --eeccC--------------------chH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence              00000                    122  4578999999999999999999973

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.95  E-value=2.6e-28  Score=226.19  Aligned_cols=243  Identities=20%  Similarity=0.194  Sum_probs=174.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCC------CChHHH---------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH------RNLVRF---------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h------~niv~l---------  134 (356)
                      ...+|.+....|+|-|++|..|.+...|+.||||++..... ..+.=+.|+.+|++|+.      -|+++|         
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~-M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknH  508 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV-MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNH  508 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH-HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcce
Confidence            45679999999999999999999998899999999975432 23455678888888842      245554         


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELAR  183 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~  183 (356)
                                                    ..++.|+..||..|-..+   |+|.||||+|||+++. ..+||||||.|.
T Consensus       509 LClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~---vlHaDIKPDNiLVNE~k~iLKLCDfGSA~  585 (752)
T KOG0670|consen  509 LCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCG---VLHADIKPDNILVNESKNILKLCDFGSAS  585 (752)
T ss_pred             eEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcC---eeecccCccceEeccCcceeeeccCcccc
Confidence                                          237889999999999999   9999999999999864 567999999997


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCc-cHHHHHHHhCCCch-
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL-NLHNFARMAFPNRV-  261 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~-~~~~~~~~~~~~~~-  261 (356)
                      +.....      ...+.-+..|.|||++.|-+|+...|+||.||+|||+.||+..|.+.....+ .+.--+...+|..+ 
T Consensus       586 ~~~ene------itPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~Kml  659 (752)
T KOG0670|consen  586 FASENE------ITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKML  659 (752)
T ss_pred             cccccc------ccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHh
Confidence            654322      2224456779999999999999999999999999999999999987554332 12222222333322 


Q ss_pred             --HHHhhhhhccccccccc---------------------cccchhhh--hchhhHHHHHHHHHHHHHhhcCCCcCCCCC
Q 039228          262 --MDIVNLVLLNDNKVLAG---------------------TNSNMLRK--TKMNSRLECLIFMVRIGAACSMGSSQDRMN  316 (356)
Q Consensus       262 --~~~~~~~l~~~~~~~~~---------------------~~~~~~~~--~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs  316 (356)
                        .+++|..+-.++...+.                     .....+..  ..+.+.....+.|.+|+..|+..||++|.|
T Consensus       660 RKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit  739 (752)
T KOG0670|consen  660 RKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRIT  739 (752)
T ss_pred             hhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCC
Confidence              12333333222111000                     01111111  123445577889999999999999999999


Q ss_pred             hHHHHH
Q 039228          317 VPNAVH  322 (356)
Q Consensus       317 ~~~vl~  322 (356)
                      ..+.|+
T Consensus       740 ~nqAL~  745 (752)
T KOG0670|consen  740 VNQALK  745 (752)
T ss_pred             HHHHhc
Confidence            998875

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.95  E-value=2.8e-27  Score=229.65  Aligned_cols=165  Identities=24%  Similarity=0.296  Sum_probs=119.8

Q ss_pred             hcCCCCccccceecCceEEEEEEEC----------------CCCeEEEEEEeeccCccchHHH--------------HHH
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFD----------------LNRAVVAIKVLSIQCQGASKSF--------------MAE  119 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~----------------~~~~~vavK~~~~~~~~~~~~~--------------~~E  119 (356)
                      ..++|.+.++||+|+||.||+|...                ..++.||||.+........+.|              ..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            4578999999999999999999752                2346799999865433222222              345


Q ss_pred             HHHHhhcCCCCh-----HH-------------------------------------------------------------
Q 039228          120 CKALKNICHRNL-----VR-------------------------------------------------------------  133 (356)
Q Consensus       120 ~~~l~~l~h~ni-----v~-------------------------------------------------------------  133 (356)
                      +.++.+++|.++     ++                                                             
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            666666655543     11                                                             


Q ss_pred             --------HHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccc
Q 039228          134 --------FISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY  205 (356)
Q Consensus       134 --------l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y  205 (356)
                              +..++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++........   .......+++.|
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~~---ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~---~~~~~g~~tp~Y  376 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRIG---IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGIN---FNPLYGMLDPRY  376 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCchHhEEECCCCcEEEEeCcCccccccCCc---cCccccCCCcce
Confidence                    1236778999999999998   99999999999999999999999999975432211   111123347899


Q ss_pred             cchhhhcCCCC----------------------CCccchHhHHHHHHHHHcCCC-CCC
Q 039228          206 TALDYDLGSEV----------------------STNGDAYNYGILLLEMVTRRK-PID  240 (356)
Q Consensus       206 ~aPE~~~~~~~----------------------~~~sDiwSlG~~l~elltg~~-Pf~  240 (356)
                      +|||.+.....                      ..+.||||+||++|+|++|.. ||.
T Consensus       377 ~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~  434 (507)
T PLN03224        377 SPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVA  434 (507)
T ss_pred             eChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence            99998754321                      124699999999999999875 664

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.5e-27  Score=232.94  Aligned_cols=221  Identities=21%  Similarity=0.269  Sum_probs=173.7

Q ss_pred             HHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH--------
Q 039228           64 YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF--------  134 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l--------  134 (356)
                      +..+...++-|++.+.||.|.+|.||+++...+++.+|+|+....... .+++..|..+|+.+. |||++.+        
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~-deEiE~eynil~~~~~hpnv~~fyg~~~k~~   89 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE-EEEIELEYNMLKKYSHHPNVATFYGAFIKKD   89 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc-cHHHHHHHHHHHhccCCCCcceEEEEEEEec
Confidence            344455677899999999999999999999999999999998755433 467788999998875 8999987        


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcc
Q 039228          135 ------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD  178 (356)
Q Consensus       135 ------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~D  178 (356)
                                                          ..|+.+++.||.+||++.   ++|||||-.|||++.++.+||.|
T Consensus        90 ~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nk---viHRDikG~NiLLT~e~~VKLvD  166 (953)
T KOG0587|consen   90 PGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNK---VIHRDIKGQNVLLTENAEVKLVD  166 (953)
T ss_pred             CCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcc---eeeecccCceEEEeccCcEEEee
Confidence                                                347889999999999998   99999999999999999999999


Q ss_pred             cccccccccCCCCCccCCCCccccccccchhhhcCC-----CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHH
Q 039228          179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-----EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       179 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~  253 (356)
                      ||++..++..    ....+...||+.|||||++...     .|+..+|+||||++..||.-|.+|+..+-.    ...+.
T Consensus       167 FGvSaQldsT----~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP----mraLF  238 (953)
T KOG0587|consen  167 FGVSAQLDST----VGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP----MRALF  238 (953)
T ss_pred             eeeeeeeecc----cccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch----hhhhc
Confidence            9999876533    3455668899999999998643     477889999999999999999999864321    11111


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                        .++.+.    .+.                    ...+..-.+.+.++|..||..|-+.||++.++++
T Consensus       239 --~IpRNP----PPk--------------------Lkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  239 --LIPRNP----PPK--------------------LKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             --cCCCCC----Ccc--------------------ccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence              111100    000                    0111244557789999999999999999998875

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-27  Score=217.73  Aligned_cols=95  Identities=33%  Similarity=0.495  Sum_probs=80.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-----CC---ChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-----HR---NLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~---niv~l--------  134 (356)
                      .++|.+.++||.|.|++||+|.+..+.+.||+|+.+.. ....+..+.||++|++++     |+   .||+|        
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            36899999999999999999999999999999998633 344567788999999884     32   45655        


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                        ..|+.||+.||.|||..+  .|||-||||+|||+
T Consensus       156 pNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl  221 (590)
T KOG1290|consen  156 PNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLL  221 (590)
T ss_pred             CCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeee
Confidence                                              348999999999999976  49999999999999

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-27  Score=209.91  Aligned_cols=238  Identities=20%  Similarity=0.181  Sum_probs=169.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..+|.-+..+|.|.- .|-.|.+.-.++.||+|.+...  .....++..+|..++..++|+||+++              
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~   94 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQ   94 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHH
Confidence            446777888999988 7888888888899999987533  23445778899999999999999987              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                -.++.|++.|+.|||+.|   |+||||||+||++..++.+||.|||+|+.-+..
T Consensus        95 e~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~---IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen   95 EVYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSAG---IIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD  171 (369)
T ss_pred             hHHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc---eeecccCcccceecchhheeeccchhhcccCcc
Confidence                                      237889999999999999   999999999999999999999999999754321


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH---hC-CC-chHH
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM---AF-PN-RVMD  263 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~---~~-~~-~~~~  263 (356)
                           ...+..+.|..|.|||++.+..+...+||||+||++.||++|..-|.+.    ..+.+|.+.   .- ++ ...+
T Consensus       172 -----~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~----d~idQ~~ki~~~lgtpd~~F~~  242 (369)
T KOG0665|consen  172 -----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGK----DHIDQWNKIIEQLGTPDPSFMK  242 (369)
T ss_pred             -----cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCc----hHHHHHHHHHHHhcCCCHHHHH
Confidence                 2344577899999999999988999999999999999999999988732    222222211   11 11 1111


Q ss_pred             Hhhhhh------ccccccccccccchhhhhchhhHH---HHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVL------LNDNKVLAGTNSNMLRKTKMNSRL---ECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      -+.+..      .+.+.. ......+-+-.++...+   .......+++.+||-.||++|.++++++.
T Consensus       243 qL~~~~r~yv~~~~~y~~-~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  243 QLQPTVRNYVENRPQYQA-ISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             HhhHHHHHHhhcChHhhc-cchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhc
Confidence            111110      011100 11111111111111111   12234678999999999999999999875

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.94  E-value=6.1e-28  Score=226.19  Aligned_cols=161  Identities=23%  Similarity=0.357  Sum_probs=139.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--------ccchHHHHHHHHHHhhcC---CCChHHHH----
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--------QGASKSFMAECKALKNIC---HRNLVRFI----  135 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---h~niv~l~----  135 (356)
                      ..+|..++.+|.|+||.|++|.++.++..|+||.+.++.        ......+-.|++||..++   |+||++++    
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE  639 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE  639 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee
Confidence            456999999999999999999999999999999987542        111223557999999998   99999983    


Q ss_pred             ----------------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          136 ----------------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       136 ----------------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                                        -|+.|++.|+++||..|   |||||||-+|+.++.+|-+||+|||.
T Consensus       640 ddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~---ivhrdikdenvivd~~g~~klidfgs  716 (772)
T KOG1152|consen  640 DDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQG---IVHRDIKDENVIVDSNGFVKLIDFGS  716 (772)
T ss_pred             cCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccC---ceecccccccEEEecCCeEEEeeccc
Confidence                                              28899999999999999   99999999999999999999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcCCCCC-CccchHhHHHHHHHHHcCCCCCC
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS-TNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                      +.....      .....++||..|.|||++.|.+|- ..-|||++|++||.++....||-
T Consensus       717 aa~~ks------gpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  717 AAYTKS------GPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             hhhhcC------CCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            975432      344568999999999999998874 55799999999999999999985

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1e-27  Score=226.65  Aligned_cols=171  Identities=24%  Similarity=0.262  Sum_probs=141.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .-|..++.||-|+||+|.+++-..|+..||+|.+.+.+   ......+..|-+||...+.+-||+|              
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVM  708 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM  708 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEE
Confidence            34778889999999999999999999999999997543   2334567789999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC---
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV---  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~---  188 (356)
                                             ..++.++..|+++.|..|   +|||||||+|||||.+|++||+|||++.-+...   
T Consensus       709 dYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmG---FIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHds  785 (1034)
T KOG0608|consen  709 DYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMG---FIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  785 (1034)
T ss_pred             eccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcc---ceecccCccceEEccCCceeeeeccccccceecccc
Confidence                                   235678999999999999   999999999999999999999999998532110   


Q ss_pred             -----CC------------------------------CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHH
Q 039228          189 -----SN------------------------------PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMV  233 (356)
Q Consensus       189 -----~~------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ell  233 (356)
                           ++                              .........+||..|+|||++....|+..+|.||.|||||||+
T Consensus       786 kYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~  865 (1034)
T KOG0608|consen  786 KYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEML  865 (1034)
T ss_pred             ccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHh
Confidence                 00                              0112234567999999999999999999999999999999999


Q ss_pred             cCCCCCCccccC
Q 039228          234 TRRKPIDFMFEG  245 (356)
Q Consensus       234 tg~~Pf~~~~~~  245 (356)
                      .|++||-.....
T Consensus       866 ~g~~pf~~~tp~  877 (1034)
T KOG0608|consen  866 VGQPPFLADTPG  877 (1034)
T ss_pred             hCCCCccCCCCC
Confidence            999999654443

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.2e-25  Score=193.80  Aligned_cols=216  Identities=16%  Similarity=0.191  Sum_probs=155.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l----------------  134 (356)
                      +.|.+.+.||+|-||.+-+++++.+++.+++|.++... ...+.|.+|...--.|. |.||+.-                
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch-hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            45999999999999999999999999999999997553 34577888887655554 8899875                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC--CCCceEEcccccccccccCCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD--NDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~--~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                           ..++.|++.||.|||+.+   +||||||.+||||-  +...+||+|||+.+..+.    
T Consensus       103 ~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHskn---lVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~----  175 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKN---LVHRDLKAENILIFDADFYRVKLCDFGLTRKVGT----  175 (378)
T ss_pred             cCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccc---hhhcccccceEEEecCCccEEEeeecccccccCc----
Confidence                                 337888999999999998   99999999999994  455899999999874332    


Q ss_pred             CccCCCCccccccccchhhhcC---C--CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          192 TQSSSNGVRRTIGYTALDYDLG---S--EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~---~--~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                         ......-+..|.+||....   +  ...+.+|+|.||+++|.++||.+||+.....+....+|....-....     
T Consensus       176 ---tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~-----  247 (378)
T KOG1345|consen  176 ---TVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNP-----  247 (378)
T ss_pred             ---eehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCc-----
Confidence               1122333556889997643   2  24678899999999999999999998655555555444332211110     


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       .+...+.                   .....+..+..+-+..+|++|=-..++-++
T Consensus       248 -~~P~~F~-------------------~fs~~a~r~Fkk~lt~~~~drcki~~~kk~  284 (378)
T KOG1345|consen  248 -ALPKKFN-------------------PFSEKALRLFKKSLTPRFKDRCKIWTAKKM  284 (378)
T ss_pred             -cCchhhc-------------------ccCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence             1100100                   122245677888899999999444444433

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.93  E-value=4.4e-25  Score=190.45  Aligned_cols=173  Identities=25%  Similarity=0.395  Sum_probs=147.0

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH------------------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF------------------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l------------------------  134 (356)
                      ||.|++|.||++....+++.+++|++...... ....+.+|+..++.++|++++++                        
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            68999999999999888899999998755332 34678899999999999999876                        


Q ss_pred             --------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEcccccccccccCCCCCccCCCCc
Q 039228          135 --------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELARFRQEVSNPTQSSSNGV  199 (356)
Q Consensus       135 --------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~  199 (356)
                                    ..++.+++.+|.+||+.+   ++|+||+|.||+++. ++.++|+|||.+........    .....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~----~~~~~  153 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLEYLHSNG---IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS----LLKTI  153 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc----hhhcc
Confidence                          347789999999999998   999999999999999 89999999999976543221    12234


Q ss_pred             cccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccc
Q 039228          200 RRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAG  278 (356)
Q Consensus       200 ~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  278 (356)
                      .+...|++||..... .++.++|+|++|+++++|                                              
T Consensus       154 ~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l----------------------------------------------  187 (215)
T cd00180         154 VGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----------------------------------------------  187 (215)
T ss_pred             cCCCCccChhHhcccCCCCchhhhHHHHHHHHHH----------------------------------------------
Confidence            567889999999877 788999999999999999                                              


Q ss_pred             cccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          279 TNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                        ..+.+++..|++.+|++||++.++++.
T Consensus       188 ------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 ------------------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             ------------------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                              035789999999999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.93  E-value=7.3e-26  Score=205.81  Aligned_cols=250  Identities=22%  Similarity=0.277  Sum_probs=170.0

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECC---CCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH--------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF--------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l--------  134 (356)
                      +....+.|..+++||.|.|++||+|.+..   .++.||+|.+....  ...++.+|+++|..+. +.||+.+        
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts--~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS--SPSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc--CchHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            34456679999999999999999999877   78899999986432  3467889999999986 6788776        


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEccccccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~  187 (356)
                                                ..++..++.||.++|..|   ||||||||+|+|.+ ..+.-.|.|||+|...+.
T Consensus       109 ~v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~G---IvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~  185 (418)
T KOG1167|consen  109 QVAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNG---IVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDG  185 (418)
T ss_pred             eeEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccC---ccccCCCccccccccccCCceEEechhHHHHHh
Confidence                                      347788999999999999   99999999999997 456778999999972110


Q ss_pred             CC----------------------------------------CCCccCCCCccccccccchhhhcCC-CCCCccchHhHH
Q 039228          188 VS----------------------------------------NPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYG  226 (356)
Q Consensus       188 ~~----------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG  226 (356)
                      ..                                        ...........||++|.|||++... ..+++.||||.|
T Consensus       186 ~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~G  265 (418)
T KOG1167|consen  186 YQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAG  265 (418)
T ss_pred             hhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeecc
Confidence            00                                        0001112345699999999998764 478899999999


Q ss_pred             HHHHHHHcCCCCCCccccCCccHHHHHHHhC----------CCc--hHHH----hhhhhccccccccccccchhhh----
Q 039228          227 ILLLEMVTRRKPIDFMFEGDLNLHNFARMAF----------PNR--VMDI----VNLVLLNDNKVLAGTNSNMLRK----  286 (356)
Q Consensus       227 ~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~----------~~~--~~~~----~~~~l~~~~~~~~~~~~~~~~~----  286 (356)
                      |+++-+++++.||-...++-..+.+.+...-          .+.  +++-    ..+.+...+....  ...+...    
T Consensus       266 VI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~--~~~~~~~~q~n  343 (418)
T KOG1167|consen  266 VILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLH--IESIYKSRQPN  343 (418)
T ss_pred             ceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccC--hhhcccccccc
Confidence            9999999999999766555444444332221          122  1110    0000000000000  0000000    


Q ss_pred             hchhhHHH-HHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          287 TKMNSRLE-CLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       287 ~~~~~~~~-~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .....-.+ .+..+.+++.+|++.||.+|.|+++.|+.
T Consensus       344 ~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkH  381 (418)
T KOG1167|consen  344 TEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKH  381 (418)
T ss_pred             eeeccccccccHHHHHHHHHHccCChhhcccHHHHhcC
Confidence            01111112 22367899999999999999999998863

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.93  E-value=3.9e-25  Score=187.53  Aligned_cols=156  Identities=17%  Similarity=0.143  Sum_probs=114.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchh
Q 039228          130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD  209 (356)
Q Consensus       130 niv~l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE  209 (356)
                      ..-.++.++.|++.||.|||+.+         ||+||+++.++.+++  ||++......         ...|++.|+|||
T Consensus        15 ~~~~~~~i~~qi~~~L~~lH~~~---------kp~Nil~~~~~~~~~--fG~~~~~~~~---------~~~g~~~y~aPE   74 (176)
T smart00750       15 NEEEIWAVCLQCLRALRELHRQA---------KSGNILLTWDGLLKL--DGSVAFKTPE---------QSRVDPYFMAPE   74 (176)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcC---------CcccEeEcCccceee--ccceEeeccc---------cCCCcccccChH
Confidence            34456789999999999999875         999999999999999  9999765331         125789999999


Q ss_pred             hhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhch
Q 039228          210 YDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKM  289 (356)
Q Consensus       210 ~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  289 (356)
                      ++.+..++.++|||||||++|||+||+.||.........+......            ........             .
T Consensus        75 ~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~------------~~~~~~~~-------------~  129 (176)
T smart00750       75 VIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNG------------MPADDPRD-------------R  129 (176)
T ss_pred             HhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHH------------hccCCccc-------------c
Confidence            9999999999999999999999999999986432211111111111            11000000             0


Q ss_pred             hhHHHHH--HHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          290 NSRLECL--IFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       290 ~~~~~~~--~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .......  ..+.+++.+||+.+|.+||++.++++.+..+...
T Consensus       130 ~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~  172 (176)
T smart00750      130 SNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALFAE  172 (176)
T ss_pred             ccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence            0001122  2588999999999999999999999999877543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.92  E-value=1.7e-26  Score=219.69  Aligned_cols=218  Identities=18%  Similarity=0.243  Sum_probs=171.0

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI--------------  135 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~--------------  135 (356)
                      ..++|.+++.+|.|.+|.||+|+++.++...|+|+++.......+-+..|+-+++..+||||+.++              
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicME   92 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICME   92 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEE
Confidence            356799999999999999999999999999999999988777788888999999999999999982              


Q ss_pred             -----------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          136 -----------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       136 -----------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                             .++++.+.||+|||+.+   =+|||||-.||++++.|.+|++|||.+..+..    .
T Consensus        93 ycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~g---k~hRdiKGanilltd~gDvklaDfgvsaqita----t  165 (829)
T KOG0576|consen   93 YCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQG---KIHRDIKGANILLTDEGDVKLADFGVSAQITA----T  165 (829)
T ss_pred             ecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCC---cccccccccceeecccCceeecccCchhhhhh----h
Confidence                                   26788999999999999   89999999999999999999999999865432    2


Q ss_pred             ccCCCCccccccccchhhh---cCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          193 QSSSNGVRRTIGYTALDYD---LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~---~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                      ......+.||+.|||||+.   ..+.|...+|||++|++..|+-.-++|....    ...+........     ..++.-
T Consensus       166 i~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdl----hpmr~l~LmTkS-----~~qpp~  236 (829)
T KOG0576|consen  166 IAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDL----HPMRALFLMTKS-----GFQPPT  236 (829)
T ss_pred             hhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccccc----chHHHHHHhhcc-----CCCCCc
Confidence            3445568999999999976   3567899999999999999998888874311    111111111000     011111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..+.                   ..-...+-+++..|+-.+|.+||+++.++.
T Consensus       237 lkDk-------------------~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  237 LKDK-------------------TKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             ccCC-------------------ccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence            1110                   122335678999999999999999998875

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=2.4e-24  Score=188.89  Aligned_cols=162  Identities=30%  Similarity=0.404  Sum_probs=138.2

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      |.+.+.||.|++|.||+|....++..+|+|.+...... ..+.+.+|+..+++++|+|++++                  
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            56778999999999999999988899999999866544 56788999999999999999987                  


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.+++.+|.+||+.+   ++|+||+|+||+++.++.++|+|||.+........   .
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~---~  154 (225)
T smart00221       81 GGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLG---IVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA---A  154 (225)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc---c
Confidence                                236778999999999998   99999999999999999999999999986543320   1


Q ss_pred             CCCCccccccccchhhh-cCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          195 SSNGVRRTIGYTALDYD-LGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~-~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                      ......++..|++||.. ....++.++|+|+||+++++|++|+.||..
T Consensus       155 ~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      155 LLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             cccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            22335567889999998 666788899999999999999999999963

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=3.3e-24  Score=222.07  Aligned_cols=156  Identities=14%  Similarity=0.147  Sum_probs=107.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-------------------CCceEEcccccccccccCCC
Q 039228          130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-------------------DLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       130 niv~l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-------------------~~~~kl~Dfg~a~~~~~~~~  190 (356)
                      +...++.++.||+.||.|||+++   |+||||||+||||+.                   ++.+|++|||+++.......
T Consensus        78 ~~~~~~~i~~qi~~al~~lH~~g---IvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~  154 (793)
T PLN00181         78 DAFECFHVFRQIVEIVNAAHSQG---IVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSE  154 (793)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCC---eeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccc
Confidence            45566789999999999999999   999999999999954                   44556666666653211000


Q ss_pred             ------------CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC
Q 039228          191 ------------PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       191 ------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                                  ..........||+.|+|||++.+..++.++|||||||++|||++|.+|+....   ..+........+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~---~~~~~~~~~~~~  231 (793)
T PLN00181        155 RRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS---RTMSSLRHRVLP  231 (793)
T ss_pred             cchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH---HHHHHHHHhhcC
Confidence                        00001122457889999999999999999999999999999999988864211   011111111000


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                              +..                       .........++.+||+.+|.+||+|.+|++
T Consensus       232 --------~~~-----------------------~~~~~~~~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        232 --------PQI-----------------------LLNWPKEASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             --------hhh-----------------------hhcCHHHHHHHHHhCCCChhhCcChHHHhh
Confidence                    000                       011123457888999999999999999976

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.87  E-value=3.2e-22  Score=186.78  Aligned_cols=142  Identities=22%  Similarity=0.124  Sum_probs=113.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECC-CCeEEEEEEeecc-----CccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDL-NRAVVAIKVLSIQ-----CQGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      ..++|.+.+.||+|+||+||+|.+.. +++.||||++...     .......+.+|+.+|++++|+|+++.         
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~L   95 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDGL   95 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcEE
Confidence            45779999999999999999999876 6788899986532     11234568899999999999999841         


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCC-CCCCeEeCCCCceEEcccccccccccCCCCCc--
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDP-KPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ--  193 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dl-kp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~--  193 (356)
                                        ..++.+++.||.|||+.|   |+|||| ||+|||++.++.++|+|||+++.+........  
T Consensus        96 VmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~g---IiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~  172 (365)
T PRK09188         96 VRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRAG---ITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIA  172 (365)
T ss_pred             EEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHCC---CeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhh
Confidence                              357788999999999999   999999 99999999999999999999987644321111  


Q ss_pred             --cCCCCccccccccchhhhcCC
Q 039228          194 --SSSNGVRRTIGYTALDYDLGS  214 (356)
Q Consensus       194 --~~~~~~~gt~~y~aPE~~~~~  214 (356)
                        .......+++.|.|||++...
T Consensus       173 ~~~d~~~~~~~~~~~~pe~~~~~  195 (365)
T PRK09188        173 AYEDLRHLLKHKRTYAPDALTPR  195 (365)
T ss_pred             hhhhhhhhhccCccCCcccCChh
Confidence              111356778889999988643

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.87  E-value=2.3e-21  Score=180.50  Aligned_cols=228  Identities=21%  Similarity=0.199  Sum_probs=162.6

Q ss_pred             CCCccccceecCceEEEEEEECCCC-eEEEEEEeeccCccchHHHHHHHHHHhhcCC----CChHHH-------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNR-AVVAIKVLSIQCQGASKSFMAECKALKNICH----RNLVRF-------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l-------------  134 (356)
                      +|++.+.||+|+||.||.|.+..++ ..+|+|............+..|+.++..+..    +++..+             
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            7999999999999999999988764 6899999875533332367778888877762    111111             


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-----CceEEccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-----LFAHIGDFELAR  183 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-----~~~kl~Dfg~a~  183 (356)
                                                +.|+.|++.+|.+||+.|   ++||||||+|++++..     ..+.|.|||+++
T Consensus        99 VM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G---~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   99 VMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKG---FIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcC---cccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence                                      668999999999999999   9999999999999854     468999999998


Q ss_pred             ccc--cCCCC----CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC
Q 039228          184 FRQ--EVSNP----TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF  257 (356)
Q Consensus       184 ~~~--~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~  257 (356)
                      ...  .....    .........||..|.++....+...+.+.|+||++.++.+++.|..||........ .........
T Consensus       176 ~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~-~~~~~~~~~  254 (322)
T KOG1164|consen  176 RFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDL-KSKFEKDPR  254 (322)
T ss_pred             cccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccch-HHHHHHHhh
Confidence            322  22111    11113456799999999999999999999999999999999999999965432211 111111110


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ...    ... ..                      ...+..+..+...+-..+..++|....+...|.......
T Consensus       255 ~~~----~~~-~~----------------------~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  255 KLL----TDR-FG----------------------DLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             hhc----ccc-cc----------------------CCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            000    000 00                      012234455555566689999999999999998886653

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.85  E-value=8.7e-21  Score=170.26  Aligned_cols=194  Identities=20%  Similarity=0.208  Sum_probs=130.2

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCC-CC----------hHHH-----
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICH-RN----------LVRF-----  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~n----------iv~l-----  134 (356)
                      +.....||.|+++.||.+++..|++.+|+|++.....   ...+.+.+|.-....+.+ .|          ++.+     
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            5667899999999999999999999999999864332   234556666655544433 11          1111     


Q ss_pred             ------------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecC
Q 039228          135 ------------------------------------------------------ISIAIDVASALDYLHHHCQELILHCD  160 (356)
Q Consensus       135 ------------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~D  160 (356)
                                                                            +.+..|++..+++||..|   ++|+|
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~G---lVHgd  170 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYG---LVHGD  170 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT---EEEST
T ss_pred             cCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcc---eEecc
Confidence                                                                  335578899999999999   99999


Q ss_pred             CCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcC--------CCCCCccchHhHHHHHHHH
Q 039228          161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG--------SEVSTNGDAYNYGILLLEM  232 (356)
Q Consensus       161 lkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~sDiwSlG~~l~el  232 (356)
                      |+|+|++++.+|.+.|+||+.....+....     .  ...+..|.+||....        -.++.+.|.|+||+++|.|
T Consensus       171 i~~~nfll~~~G~v~Lg~F~~~~r~g~~~~-----~--~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~l  243 (288)
T PF14531_consen  171 IKPENFLLDQDGGVFLGDFSSLVRAGTRYR-----C--SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSL  243 (288)
T ss_dssp             -SGGGEEE-TTS-EEE--GGGEEETTEEEE-----G--GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHH
T ss_pred             cceeeEEEcCCCCEEEcChHHHeecCceee-----c--cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHH
Confidence            999999999999999999998765433211     0  223467899997643        2468889999999999999


Q ss_pred             HcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcC
Q 039228          233 VTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQ  312 (356)
Q Consensus       233 ltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~  312 (356)
                      ++|..||...........                 .+ ..+                   .+.++.+..||...|+.||+
T Consensus       244 WC~~lPf~~~~~~~~~~~-----------------~f-~~C-------------------~~~Pe~v~~LI~~lL~~~~~  286 (288)
T PF14531_consen  244 WCGRLPFGLSSPEADPEW-----------------DF-SRC-------------------RDMPEPVQFLIRGLLQRNPE  286 (288)
T ss_dssp             HHSS-STCCCGGGSTSGG-----------------GG-TTS-------------------S---HHHHHHHHHHT-SSGG
T ss_pred             HHccCCCCCCCccccccc-----------------cc-hhc-------------------CCcCHHHHHHHHHHccCCcc
Confidence            999999986533221100                 00 011                   14555788999999999999


Q ss_pred             CC
Q 039228          313 DR  314 (356)
Q Consensus       313 ~R  314 (356)
                      +|
T Consensus       287 ~R  288 (288)
T PF14531_consen  287 DR  288 (288)
T ss_dssp             GS
T ss_pred             cC
Confidence            88

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.3e-21  Score=192.27  Aligned_cols=221  Identities=15%  Similarity=0.122  Sum_probs=161.4

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeecc--Ccc----chHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQG----ASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~----~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ....++|.|++|.|+.+........++.|.+...  ...    ....+..|+-+-..+.|||++..              
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            4567899999998888877665565666654311  111    11225567777788899997754              


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            -.++.|++.|+.|+|..|   |.|||+|++|+++..+|.+||+|||.+..+.......
T Consensus       401 E~~~~Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~G---iahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~  477 (601)
T KOG0590|consen  401 EYCPYDLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMG---LAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKN  477 (601)
T ss_pred             hcccHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcC---ceeccCccccEEEecCCceEEeecCcceeeccCcchh
Confidence                                  126778999999999999   9999999999999999999999999998765554444


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCc-cchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTN-GDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~-sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      .......+|+..|+|||++.+..|.+. .||||.|+++..|.+|+.||......+..+..   .....+.....      
T Consensus       478 ~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~---~~~~~~~~~~~------  548 (601)
T KOG0590|consen  478 IHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKT---NNYSDQRNIFE------  548 (601)
T ss_pred             hhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhh---hcccccccccc------
Confidence            456677899999999999999998765 69999999999999999999765544433200   00111100000      


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                     .........+.....++.++|+.||.+|.|+++|++
T Consensus       549 ---------------~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  549 ---------------GPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             ---------------ChHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence                           001111244556678999999999999999999986

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-19  Score=161.00  Aligned_cols=167  Identities=22%  Similarity=0.309  Sum_probs=136.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l----------------  134 (356)
                      -+|++.++||+|+||+++.|...-+++.||||.-+....  ..++..|.+..+.|. .++|..+                
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~--APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSE--APQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccCC--cchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            469999999999999999999999999999998764432  346677777777665 3444433                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-----CceEEcccccccccccC
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-----LFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-----~~~kl~Dfg~a~~~~~~  188 (356)
                                           ..++.|++.-++|+|++.   +|+|||||+|+||...     ..+.|+|||+|+.....
T Consensus       106 LGPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~---LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp  182 (449)
T KOG1165|consen  106 LGPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKD---LIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDP  182 (449)
T ss_pred             hCcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcc---eeecccCccceeecCCCCCCCceEEEEeccchhhhcCc
Confidence                                 447889999999999999   9999999999999743     35889999999976544


Q ss_pred             CCC---CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccc
Q 039228          189 SNP---TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF  243 (356)
Q Consensus       189 ~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~  243 (356)
                      ...   .........||..||+-....+.+.+.+.|+=|||-++++.|-|..||.+..
T Consensus       183 ~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLK  240 (449)
T KOG1165|consen  183 KTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK  240 (449)
T ss_pred             cccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccccc
Confidence            332   1233455779999999999999999999999999999999999999998754

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.83  E-value=5.3e-20  Score=156.56  Aligned_cols=170  Identities=23%  Similarity=0.329  Sum_probs=135.6

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCC----CChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH----RNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l-----------  134 (356)
                      ..+.|.+++.||+|+||.+|.|....+|..||||+-+..  .....+..|.++...|++    |+|-.+           
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~--a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK--AKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeeccc--CCCcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            356799999999999999999999999999999996533  223467778888777764    333332           


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a~~~~~~  188 (356)
                                             +-++-|++.-++|+|.++   +|||||||+|+|..-   ...+.|+|||+|+..-..
T Consensus        91 dLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~---fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~  167 (341)
T KOG1163|consen   91 DLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRN---FIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDI  167 (341)
T ss_pred             eccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhc---cccccCCccceeeccccccceEEEEeccchhhhccc
Confidence                                   346778999999999999   999999999999973   446789999999876443


Q ss_pred             CCC---CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcccc
Q 039228          189 SNP---TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFE  244 (356)
Q Consensus       189 ~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~  244 (356)
                      ...   .........||..|.+-....+...+.+.|+=|+|.++.+..-|..||++...
T Consensus       168 ~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka  226 (341)
T KOG1163|consen  168 RTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA  226 (341)
T ss_pred             cccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence            321   12334457799999998888888888999999999999999999999986543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.82  E-value=1.1e-20  Score=188.61  Aligned_cols=232  Identities=21%  Similarity=0.208  Sum_probs=157.0

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChH----HHHH----HHHHH
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLV----RFIS----IAIDV  141 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv----~l~~----i~~~i  141 (356)
                      ...+|..++.|..|++|.||.++++.+.+.+|+|+ ++...     +.+-  ++.....|.+|    .++.    .-.++
T Consensus        81 ~e~df~~IklisngAygavylvrh~~trqrfa~ki-Nkq~l-----ilRn--ilt~a~npfvvgDc~tllk~~g~lPvdm  152 (1205)
T KOG0606|consen   81 SESDFNTIKLISNGAYGAVYLVRHKETRQRFAMKI-NKQNL-----ILRN--ILTFAGNPFVVGDCATLLKNIGPLPVDM  152 (1205)
T ss_pred             CccccceeEeeccCCCCceeeeeccccccchhhcc-cccch-----hhhc--cccccCCcceechhhhhcccCCCCcchh
Confidence            35689999999999999999999999999999954 32211     1111  44444555553    1111    12345


Q ss_pred             HHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC-----------CCccCCCCccccccccchhh
Q 039228          142 ASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN-----------PTQSSSNGVRRTIGYTALDY  210 (356)
Q Consensus       142 ~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-----------~~~~~~~~~~gt~~y~aPE~  210 (356)
                      +.+++|||+.+   |+|||+||+|.+|..-|++|++|||+.+..-....           ...-....++||+.|.|||+
T Consensus       153 vla~Eylh~yg---ivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeV  229 (1205)
T KOG0606|consen  153 VLAVEYLHSYG---IVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEV  229 (1205)
T ss_pred             hHHhHhhccCC---eecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhh
Confidence            88999999999   99999999999999999999999999975422111           12233456789999999999


Q ss_pred             hcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchh
Q 039228          211 DLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMN  290 (356)
Q Consensus       211 ~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  290 (356)
                      +....|+..+|+|++|+++||.+.|..||.....+                 +++...+..+.             .|++
T Consensus       230 ilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpe-----------------elfg~visd~i-------------~wpE  279 (1205)
T KOG0606|consen  230 ILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE-----------------ELFGQVISDDI-------------EWPE  279 (1205)
T ss_pred             hhhhccCCCccHHHHHHHHHHHheeeeeccCCCHH-----------------HHHhhhhhhhc-------------cccc
Confidence            99999999999999999999999999999753221                 11111111111             0111


Q ss_pred             hHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccccCCcCCc
Q 039228          291 SRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRA  345 (356)
Q Consensus       291 ~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~~~~~~~~  345 (356)
                      .+...+.+..+++.+.|+.+|..|--...   .++--.+.+.....|.+|-.+++
T Consensus       280 ~dea~p~Ea~dli~~LL~qnp~~Rlgt~g---a~evk~h~ff~~LDw~~llRqka  331 (1205)
T KOG0606|consen  280 EDEALPPEAQDLIEQLLRQNPLCRLGTGG---ALEVKQHGFFQLLDWKSLLRQKA  331 (1205)
T ss_pred             cCcCCCHHHHHHHHHHHHhChHhhcccch---hhhhhhccceeecccchhhhhhc
Confidence            12233445678888889999999964332   22222333333444454444443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.82  E-value=6e-19  Score=161.74  Aligned_cols=222  Identities=24%  Similarity=0.334  Sum_probs=162.0

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc---chHHHHHHHHHHhhcCCC-ChHHH---------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---ASKSFMAECKALKNICHR-NLVRF---------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~-niv~l---------------  134 (356)
                      |.+.+.||.|+||.||++.+.   ..+++|.+......   ....+.+|+.++..+.|+ +++++               
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            677889999999999999987   78899998754333   356789999999999988 68776               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEcccccccccccC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~  188 (356)
                                               ..++.+++.++.|+|..+   ++|||+||+||+++..+ .++++|||.++.....
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~---~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~  155 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG---IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDP  155 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeecCCCCeEEEeccCcceecCCC
Confidence                                     346778999999999999   99999999999999888 7999999999855433


Q ss_pred             CCCCc--cCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccC--CccHHHHHHHhCCCch
Q 039228          189 SNPTQ--SSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEG--DLNLHNFARMAFPNRV  261 (356)
Q Consensus       189 ~~~~~--~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~--~~~~~~~~~~~~~~~~  261 (356)
                      .....  .......|+..|++||.+.+   ..++...|+||+|++++++++|..||......  ..............  
T Consensus       156 ~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--  233 (384)
T COG0515         156 GSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP--  233 (384)
T ss_pred             CccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCc--
Confidence            32111  13456788999999999987   57889999999999999999999997543221  01111111111000  


Q ss_pred             HHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          262 MDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       262 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                            ........              .........+.+++..|+..+|..|.++.+....
T Consensus       234 ------~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         234 ------SLASPLSP--------------SNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             ------ccccccCc--------------cccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence                  00000000              0001223456789999999999999998887765

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=6.2e-21  Score=178.76  Aligned_cols=93  Identities=29%  Similarity=0.464  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC--CCccCCCCccccccccchhhhcC
Q 039228          136 SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN--PTQSSSNGVRRTIGYTALDYDLG  213 (356)
Q Consensus       136 ~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~~~~gt~~y~aPE~~~~  213 (356)
                      .++.|++.|+.|   ++   .+|+|+||.||+...+..+||+|||+.........  ........-.||..||+||.+.+
T Consensus       363 ~~~~q~~~~~~y---k~---~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g  436 (516)
T KOG1033|consen  363 DIFKQIAPAVEY---KG---LIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRG  436 (516)
T ss_pred             HHHHhhccchhh---cc---chhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhh
Confidence            367788888888   66   99999999999999999999999999875543321  11223455779999999999999


Q ss_pred             CCCCCccchHhHHHHHHHHHc
Q 039228          214 SEVSTNGDAYNYGILLLEMVT  234 (356)
Q Consensus       214 ~~~~~~sDiwSlG~~l~ellt  234 (356)
                      ..|+.++||||||++++|+++
T Consensus       437 ~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  437 QQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             hhhhhhcchhhHHHHHHHHHH
Confidence            999999999999999999997

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=1.8e-19  Score=180.42  Aligned_cols=214  Identities=16%  Similarity=0.165  Sum_probs=149.6

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccc---hHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGA---SKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~---~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      +|...+.||++.|=.|.+|++.++  .|+||++-+.. .-.   .++.+.|++ ...++|||.+++              
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG--~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvR  100 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREG--LVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVR  100 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCc--eEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHH
Confidence            677888999999999999998754  49999985443 222   234445555 566789999887              


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc--ccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR--QEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~--~~~~~  190 (356)
                                            .-|+.|++.||..+|..|   |+|||||.+||||+.=..+.|+||..-+..  ...+.
T Consensus       101 qyvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~g---VcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNP  177 (1431)
T KOG1240|consen  101 QYVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLG---VCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNP  177 (1431)
T ss_pred             HHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcC---ccccccccceEEEeeechhhhhcccccCCccCCCCCc
Confidence                                  127889999999999999   999999999999999999999999876532  22221


Q ss_pred             C-CccCCCCccccccccchhhhcCC----------C-CCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhC
Q 039228          191 P-TQSSSNGVRRTIGYTALDYDLGS----------E-VSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAF  257 (356)
Q Consensus       191 ~-~~~~~~~~~gt~~y~aPE~~~~~----------~-~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~  257 (356)
                      . ..........-.+|.|||.+...          . .+++-||||+||++.|+++ |++||...     .+..+.... 
T Consensus       178 adf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS-----QL~aYr~~~-  251 (1431)
T KOG1240|consen  178 ADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS-----QLLAYRSGN-  251 (1431)
T ss_pred             ccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH-----HHHhHhccC-
Confidence            1 11111222234579999987542          1 5678899999999999998 78888621     111111111 


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      .......+...-                        +  ..+.++++.|++.||.+|-++++.++.-
T Consensus       252 ~~~~e~~Le~Ie------------------------d--~~~Rnlil~Mi~rdPs~RlSAedyL~~y  292 (1431)
T KOG1240|consen  252 ADDPEQLLEKIE------------------------D--VSLRNLILSMIQRDPSKRLSAEDYLQKY  292 (1431)
T ss_pred             ccCHHHHHHhCc------------------------C--ccHHHHHHHHHccCchhccCHHHHHHhh
Confidence            111111111110                        1  1467899999999999999999999873

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.77  E-value=5.9e-19  Score=159.91  Aligned_cols=152  Identities=18%  Similarity=0.157  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC--CCC--ceEEcccccccccccC--CCCCccCCCCccccccccchhh
Q 039228          137 IAIDVASALDYLHHHCQELILHCDPKPSNVLLD--NDL--FAHIGDFELARFRQEV--SNPTQSSSNGVRRTIGYTALDY  210 (356)
Q Consensus       137 i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~--~~~--~~kl~Dfg~a~~~~~~--~~~~~~~~~~~~gt~~y~aPE~  210 (356)
                      ++.|+++|+.|||.+|   |.|||+|++|||+.  +++  .+.|+|||++---+..  ..+.....-..-|....||||+
T Consensus       346 ~laQlLEav~hL~~hg---vAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi  422 (598)
T KOG4158|consen  346 ILAQLLEAVTHLHKHG---VAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEI  422 (598)
T ss_pred             HHHHHHHHHHHHHHcc---chhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhh
Confidence            7789999999999999   99999999999993  443  4689999998532211  1111222223446677899999


Q ss_pred             hcCCC------CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchh
Q 039228          211 DLGSE------VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNML  284 (356)
Q Consensus       211 ~~~~~------~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  284 (356)
                      ....+      --.++|.|+.|.+.||+++...||-...+...+...+.+..+                           
T Consensus       423 ~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qL---------------------------  475 (598)
T KOG4158|consen  423 ATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQL---------------------------  475 (598)
T ss_pred             hhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhC---------------------------
Confidence            86532      125789999999999999999999642211112221111111                           


Q ss_pred             hhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          285 RKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       285 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          +..+..++..+.+|+...|+.||.+|++..=...
T Consensus       476 ----Palp~~vpp~~rqlV~~lL~r~pskRvsp~iAAN  509 (598)
T KOG4158|consen  476 ----PALPSRVPPVARQLVFDLLKRDPSKRVSPNIAAN  509 (598)
T ss_pred             ----CCCcccCChHHHHHHHHHhcCCccccCCccHHHh
Confidence                1111245556778999999999999998654333

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.77  E-value=3.8e-19  Score=155.16  Aligned_cols=142  Identities=14%  Similarity=0.156  Sum_probs=108.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchH---H------HHHHHHHHhhcCCCChHHH------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK---S------FMAECKALKNICHRNLVRF------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~---~------~~~E~~~l~~l~h~niv~l------  134 (356)
                      ..++|++.++||.|+||.||++..  ++..+|||++.........   .      +.+|+..+.++.|++|..+      
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~  106 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLL  106 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeee
Confidence            357899999999999999999655  3568999999744332222   2      5789999999999987765      


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     -....+++.+|..+|..|   ++|||++|+||+++.+| ++|+|||...
T Consensus       107 ~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~g---i~H~Dikp~Nili~~~g-i~liDfg~~~  182 (232)
T PRK10359        107 AERKTLRYAHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQHG---MVSGDPHKGNFIVSKNG-LRIIDLSGKR  182 (232)
T ss_pred             cccccccccCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHcC---CccCCCChHHEEEeCCC-EEEEECCCcc
Confidence                                           123568999999999999   99999999999999988 9999999886


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMV  233 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ell  233 (356)
                      .......                ...+.....+..++|+||||+++....
T Consensus       183 ~~~e~~a----------------~d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        183 CTAQRKA----------------KDRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             cccchhh----------------HHHHHHHhHhcccccccceeEeehHHH
Confidence            4321110                011344455667899999999876543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=2.9e-19  Score=154.61  Aligned_cols=211  Identities=19%  Similarity=0.264  Sum_probs=150.0

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ..++-+|.....|+.|+|++.  |..+++|+++...  ......|..|...|+-+.||||+.+                 
T Consensus       192 lnl~tkl~e~hsgelwrgrwq--gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~m  269 (448)
T KOG0195|consen  192 LNLITKLAESHSGELWRGRWQ--GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYM  269 (448)
T ss_pred             hhhhhhhccCCCccccccccc--CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeec
Confidence            445557888999999999997  5567788876432  2334678889999999999999987                 


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+|++|++|||+.. +-|.---|.+..++||++.+.+|+ .+-+++.       
T Consensus       270 p~gslynvlhe~t~vvvd~sqav~faldiargmaflhsle-p~ipr~~lns~hvmidedltaris-mad~kfs-------  340 (448)
T KOG0195|consen  270 PFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARIS-MADTKFS-------  340 (448)
T ss_pred             cchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhhee-cccceee-------
Confidence                                  457889999999999974 223344688999999999888764 2222211       


Q ss_pred             ccCCCCccccccccchhhhcCCCCC---CccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVS---TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~---~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                       ....+..-.+.|++||.+...+-+   .++|+|||++++||+.|...||.....-.....-...             .+
T Consensus       341 -fqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkiale-------------gl  406 (448)
T KOG0195|consen  341 -FQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALE-------------GL  406 (448)
T ss_pred             -eeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhc-------------cc
Confidence             111122336789999999765533   4689999999999999999999765433222111110             01


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .                  ..+++.....+..|+.-|.+.||.+||.++.|+-.|++.
T Consensus       407 r------------------v~ippgis~hm~klm~icmnedpgkrpkfdmivpilekm  446 (448)
T KOG0195|consen  407 R------------------VHIPPGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKM  446 (448)
T ss_pred             c------------------ccCCCCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHh
Confidence            1                  011123334567899999999999999999999988875

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.73  E-value=9.3e-19  Score=167.23  Aligned_cols=150  Identities=25%  Similarity=0.217  Sum_probs=120.4

Q ss_pred             cceecCceEEEEEEE---CCCCeEEEEEEeeccCcc--chHHHHHHHHHHhhcC-CCChHHH------------------
Q 039228           79 LIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQCQG--ASKSFMAECKALKNIC-HRNLVRF------------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~---~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~-h~niv~l------------------  134 (356)
                      ++|.|.||.|++++-   ...+..+|+|++++....  .......|..++...+ ||.+|++                  
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            379999999987653   234688999988644221  1124556788888887 8988876                  


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..+..+++.|++++|+.+   |+|||+|++||+++.+|++++.|||+++..-....     
T Consensus        81 gg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~---iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~-----  152 (612)
T KOG0603|consen   81 GGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLG---IAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI-----  152 (612)
T ss_pred             cchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhH---HHHhcccccceeecccCccccCCchhhhHhHhhhh-----
Confidence                               124567899999999999   99999999999999999999999999986543221     


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         .+||..|||||++.  .....+|.||||++++||+||..||..
T Consensus       153 ---~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  153 ---ACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             ---cccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence               27899999999998  567889999999999999999999974

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.72  E-value=7.5e-18  Score=144.67  Aligned_cols=103  Identities=19%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCcc--c-------h-----------------HHHHHHHHHHhhcCCCC
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG--A-------S-----------------KSFMAECKALKNICHRN  130 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~-------~-----------------~~~~~E~~~l~~l~h~n  130 (356)
                      ...||+|+||.||+|... +|+.||||+++.....  .       .                 .....|+..+.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            468999999999999987 7899999999754211  0       0                 12234888888886554


Q ss_pred             hHH-----------------------------------HHHHHHHHHHHHHHH-hhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          131 LVR-----------------------------------FISIAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       131 iv~-----------------------------------l~~i~~~i~~aL~~L-H~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                      +..                                   +..++.|++.+|.++ |+.+   |+||||||+||+++ ++.+
T Consensus        81 v~~p~~~~~~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~g---iiHrDlkP~NIli~-~~~v  156 (190)
T cd05147          81 IPCPEPILLKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCR---LVHADLSEYNLLYH-DGKL  156 (190)
T ss_pred             CCCCcEEEecCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEE-CCcE
Confidence            311                                   145788999999999 6888   99999999999998 4789


Q ss_pred             EEcccccccc
Q 039228          175 HIGDFELARF  184 (356)
Q Consensus       175 kl~Dfg~a~~  184 (356)
                      +|+|||+|..
T Consensus       157 ~LiDFG~a~~  166 (190)
T cd05147         157 YIIDVSQSVE  166 (190)
T ss_pred             EEEEcccccc
Confidence            9999999964

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.72  E-value=2.8e-17  Score=141.37  Aligned_cols=104  Identities=18%  Similarity=0.102  Sum_probs=84.8

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccc--------------------------hHHHHHHHHHHhhcCCCC
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--------------------------SKSFMAECKALKNICHRN  130 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~--------------------------~~~~~~E~~~l~~l~h~n  130 (356)
                      ...||+|+||.||+|.+. +|+.||||+++......                          ...+..|...+.++.|++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            568999999999999987 78999999987542110                          112356888888888776


Q ss_pred             hHHH-----------------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCce
Q 039228          131 LVRF-----------------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       131 iv~l-----------------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                      +...                                   ..++.+++.+|.++|+ .|   |+||||||+||+++ ++.+
T Consensus        81 i~~p~~~~~~~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~g---ivHrDlkP~NIll~-~~~~  156 (190)
T cd05145          81 VPVPEPILLKKNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAG---LVHGDLSEYNILYH-DGKP  156 (190)
T ss_pred             CCCceEEEecCCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCChhhEEEE-CCCE
Confidence            5321                                   4578899999999999 88   99999999999999 8899


Q ss_pred             EEccccccccc
Q 039228          175 HIGDFELARFR  185 (356)
Q Consensus       175 kl~Dfg~a~~~  185 (356)
                      +|+|||++...
T Consensus       157 ~liDFG~a~~~  167 (190)
T cd05145         157 YIIDVSQAVEL  167 (190)
T ss_pred             EEEEcccceec
Confidence            99999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.70  E-value=3.4e-17  Score=140.21  Aligned_cols=163  Identities=16%  Similarity=-0.017  Sum_probs=115.5

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeeccCccc----hHHHHHHHHHHhhcCC-CChHHH---------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA----SKSFMAECKALKNICH-RNLVRF---------------  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----~~~~~~E~~~l~~l~h-~niv~l---------------  134 (356)
                      .+...|++|+||+||.+..  .+..++.+.+.....-.    ...+.+|+++|++|.| ++++++               
T Consensus         5 ~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G   82 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAG   82 (218)
T ss_pred             ccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecC
Confidence            4567899999999997765  46788877776443311    1257889999999964 445443               


Q ss_pred             -----------HHHHHHHHHHHHHHhhcCCCcEEecCC-CCCCeEeCCCCceEEcccccccccccCCCC----Cc-----
Q 039228          135 -----------ISIAIDVASALDYLHHHCQELILHCDP-KPSNVLLDNDLFAHIGDFELARFRQEVSNP----TQ-----  193 (356)
Q Consensus       135 -----------~~i~~~i~~aL~~LH~~~~~~iiH~Dl-kp~NIll~~~~~~kl~Dfg~a~~~~~~~~~----~~-----  193 (356)
                                 ..++.+++.+|.++|..|   |+|||| ||+|||++.++.++|+|||++.........    ..     
T Consensus        83 ~~L~~~~~~~~~~~~~qi~~~L~~lH~~G---IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~  159 (218)
T PRK12274         83 AAMYQRPPRGDLAYFRAARRLLQQLHRCG---VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRH  159 (218)
T ss_pred             ccHHhhhhhhhHHHHHHHHHHHHHHHHCc---CccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHH
Confidence                       346788999999999999   999999 799999999999999999999854322110    00     


Q ss_pred             cCCCCccccccccchhhhcCC-CCC-CccchHhHHHHHHHHHcCCCCCCcc
Q 039228          194 SSSNGVRRTIGYTALDYDLGS-EVS-TNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~-~~~-~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ....-...++.|++|+...-- ..+ ...+.++.|.-+|.++|+..|+-..
T Consensus       160 llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        160 LLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             HHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence            000011235667777643221 222 4568899999999999999987543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.68  E-value=1.2e-16  Score=152.45  Aligned_cols=168  Identities=21%  Similarity=0.293  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCcE-EecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcC
Q 039228          135 ISIAIDVASALDYLHHHCQELI-LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG  213 (356)
Q Consensus       135 ~~i~~~i~~aL~~LH~~~~~~i-iH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  213 (356)
                      ..+.++|+.||.|||+..   | .|+.+++.|+++|....+||+|||+.......  ..............|.|||.+.+
T Consensus        51 ~s~~rdi~~Gl~ylh~s~---i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~--~~~~~~~~~~~~~lw~aPellr~  125 (484)
T KOG1023|consen   51 LSFIRDISKGLAYLHNSP---IGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEET--AEPEAHHPIRKALLWTAPELLRG  125 (484)
T ss_pred             HHHHHHHHHHHHHHhcCc---ceeeeeeccccceeeeeEEEEechhhhccccccc--ccccccchhHHHHhccCHHHhcc
Confidence            457789999999999875   5 89999999999999999999999998876431  11111122234567999999876


Q ss_pred             CC-------CCCccchHhHHHHHHHHHcCCCCCCccccCCcc--HHHHHHHhCCCchHHHhhhhhccccccccccccchh
Q 039228          214 SE-------VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN--LHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNML  284 (356)
Q Consensus       214 ~~-------~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  284 (356)
                      ..       .+.+.||||||++++|+++...||+........  +...+....        ...+.+....         
T Consensus       126 ~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~--------~~~~rP~i~~---------  188 (484)
T KOG1023|consen  126 ALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGG--------SNPFRPSIEL---------  188 (484)
T ss_pred             cccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcC--------CCCcCcchhh---------
Confidence            41       466799999999999999999999864433221  111111100        0001111000         


Q ss_pred             hhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          285 RKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       285 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                            .. +....+..++..||..+|.+||++.++-..++.+....
T Consensus       189 ------~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~  228 (484)
T KOG1023|consen  189 ------LN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGG  228 (484)
T ss_pred             ------hh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcccc
Confidence                  00 22336789999999999999999999999999887754

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.4e-16  Score=161.96  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=124.0

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC---CCChHHH--------
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC---HRNLVRF--------  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l--------  134 (356)
                      +.......|.|.+.||+|+||.||.|.... ++.||+|+-+.....   +|.-=.+++.+|+   -+.|..+        
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~W---EfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~  767 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPW---EFYICLQVMERLKPQMLPSIMHISSAHVFQN  767 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCce---eeeehHHHHHhhchhhhcchHHHHHHHccCC
Confidence            334455679999999999999999999987 899999996543221   1111223333333   1112222        


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-------CCCceEEcc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-------NDLFAHIGD  178 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-------~~~~~kl~D  178 (356)
                                                   +.+..+++.-++.||..+   |||+||||+|+||.       +..-++|+|
T Consensus       768 ~S~lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~---IIHgDiKPDNfll~~~~~~~~~~~~l~lID  844 (974)
T KOG1166|consen  768 ASVLVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMG---IIHGDIKPDNFLLRREICADSDSKGLYLID  844 (974)
T ss_pred             cceeeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcc---eecccCCcceeEeecccCCCCcccceEEEe
Confidence                                         457789999999999999   99999999999994       345689999


Q ss_pred             cccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCC
Q 039228          179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP  238 (356)
Q Consensus       179 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~P  238 (356)
                      ||.+--+.-..+  .......++|-.+-.+|...|.+++...|.|.|+.+++.||.|+.-
T Consensus       845 fG~siDm~lfp~--~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  845 FGRSIDMKLFPD--GTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             cccceeeeEcCC--CcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            999965433222  3455667889999999999999999999999999999999999653

>PRK10345 hypothetical protein; Provisional

Probab=99.62  E-value=1.9e-15  Score=131.21  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=81.0

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-----CCCChHHHH--------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-----CHRNLVRFI--------------  135 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-----~h~niv~l~--------------  135 (356)
                      .-...||+|+||.||.  +..++.. +||++........+.+.+|+.+++.+     +||||++++              
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEE
Confidence            3456899999999995  6666555 69998765444567899999999999     579999871              


Q ss_pred             --------------------------HHHHHHHHHH-HHHhhcCCCcEEecCCCCCCeEeCC----CCceEEcccccc
Q 039228          136 --------------------------SIAIDVASAL-DYLHHHCQELILHCDPKPSNVLLDN----DLFAHIGDFELA  182 (356)
Q Consensus       136 --------------------------~i~~~i~~aL-~~LH~~~~~~iiH~Dlkp~NIll~~----~~~~kl~Dfg~a  182 (356)
                                                .++.+++.++ +|||+++   ||||||||+|||++.    ++.++|+||+.+
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh~~~---IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLLDNR---IVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             EEecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHHHCC---EeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence                                      1356777777 8999999   999999999999973    347999995444

>smart00090 RIO RIO-like kinase

Probab=99.57  E-value=1e-14  Score=129.56  Aligned_cols=115  Identities=18%  Similarity=0.133  Sum_probs=89.5

Q ss_pred             HHhhcCCCCccccceecCceEEEEEE-ECCCCeEEEEEEeeccCcc------------------------chHHHHHHHH
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGV-FDLNRAVVAIKVLSIQCQG------------------------ASKSFMAECK  121 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~-~~~~~~~vavK~~~~~~~~------------------------~~~~~~~E~~  121 (356)
                      +......|.+.+.||.|+||.||+|. +..+|+.||+|++......                        ....+..|+.
T Consensus        23 ~~~~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  102 (237)
T smart00090       23 LLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFR  102 (237)
T ss_pred             HHhcCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHH
Confidence            33444468899999999999999999 6667899999998743210                        0123567999


Q ss_pred             HHhhcCCCChH--H---------------------------------HHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCe
Q 039228          122 ALKNICHRNLV--R---------------------------------FISIAIDVASALDYLHHHCQELILHCDPKPSNV  166 (356)
Q Consensus       122 ~l~~l~h~niv--~---------------------------------l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NI  166 (356)
                      ++.++.+.++.  +                                 ...++.+++.+|.+||..+  .|+||||||+||
T Consensus       103 ~L~~L~~~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g--~iiH~Dikp~NI  180 (237)
T smart00090      103 NLQRLYEAGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEG--ELVHGDLSEYNI  180 (237)
T ss_pred             HHHHHHhcCCCCCeeeEecCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcC--CEEeCCCChhhE
Confidence            98888653221  1                                 1368899999999999876  399999999999


Q ss_pred             EeCCCCceEEcccccccc
Q 039228          167 LLDNDLFAHIGDFELARF  184 (356)
Q Consensus       167 ll~~~~~~kl~Dfg~a~~  184 (356)
                      +++ ++.++|+|||.+..
T Consensus       181 li~-~~~i~LiDFg~a~~  197 (237)
T smart00090      181 LVH-DGKVVIIDVSQSVE  197 (237)
T ss_pred             EEE-CCCEEEEEChhhhc
Confidence            999 88999999999864

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.57  E-value=1.9e-14  Score=124.53  Aligned_cols=116  Identities=23%  Similarity=0.199  Sum_probs=89.6

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc----------------------chHHHHHHHHHH
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG----------------------ASKSFMAECKAL  123 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~----------------------~~~~~~~E~~~l  123 (356)
                      .+......|.+.+.||.|+||.||+|... +++.||||++......                      ....+..|..++
T Consensus         9 ~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           9 TLVKRGVVESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHcCchhhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            33344444888899999999999999875 6799999987643210                      011356788888


Q ss_pred             hhcCCCCh--HH---------------------------HHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          124 KNICHRNL--VR---------------------------FISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       124 ~~l~h~ni--v~---------------------------l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                      ..+.|+++  ..                           ...++.+++.++.++|+.+   |+|+||+|+||+++.++.+
T Consensus        88 ~~l~~~~i~v~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~g---i~H~Dl~p~Nill~~~~~~  164 (198)
T cd05144          88 KALYEEGFPVPKPIDWNRHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKHG---IIHGDLSEFNILVDDDEKI  164 (198)
T ss_pred             HHHHHcCCCCCceeecCCceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHCC---CCcCCCCcccEEEcCCCcE
Confidence            88776632  11                           1347889999999999999   9999999999999999999


Q ss_pred             EEccccccccc
Q 039228          175 HIGDFELARFR  185 (356)
Q Consensus       175 kl~Dfg~a~~~  185 (356)
                      +|+|||.+...
T Consensus       165 ~liDfg~~~~~  175 (198)
T cd05144         165 YIIDWPQMVST  175 (198)
T ss_pred             EEEECCccccC
Confidence            99999999643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.49  E-value=1.1e-13  Score=119.69  Aligned_cols=100  Identities=22%  Similarity=0.245  Sum_probs=80.9

Q ss_pred             cceecCceEEEEEEECCCCeEEEEEEeeccCc--------cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           79 LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .||+|+||.||+|.+.  +..|++|.......        ....++.+|+.++..+.|+++...                
T Consensus         1 ~ig~G~~~~vy~~~~~--~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   78 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFL--GLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEY   78 (199)
T ss_pred             CCCCCceEEEEEeecC--CccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE
Confidence            4899999999999954  67899998643211        112457789999999987764321                


Q ss_pred             ---------H-----HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ---------I-----SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ---------~-----~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                               +     .++.+++.+|.+||+.+   ++|+|++|.||+++ ++.++++|||++..
T Consensus        79 ~~g~~l~~~~~~~~~~~~~~i~~~l~~lH~~g---i~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        79 IEGKPLKDVIEEGNDELLREIGRLVGKLHKAG---IVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             ECCccHHHHHhhcHHHHHHHHHHHHHHHHHCC---eecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence                     1     68899999999999999   99999999999999 88999999999864

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.49  E-value=1.1e-13  Score=120.81  Aligned_cols=100  Identities=21%  Similarity=0.213  Sum_probs=81.7

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccCcc--------chHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG--------ASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      +.||+|++|.||+|.+  .+..|++|+.......        ....+.+|+.++..+.|+++...               
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e   79 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVME   79 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEE
Confidence            5789999999999987  4678999986532211        12357789999999988776532               


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 ------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                        ..++.+++.+|.++|+.+   ++|+|++|.||+++ ++.++|+|||.+.
T Consensus        80 ~~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~Dl~p~Nil~~-~~~~~liDf~~a~  142 (211)
T PRK14879         80 YIEGEPLKDLINSNGMEELELSREIGRLVGKLHSAG---IIHGDLTTSNMILS-GGKIYLIDFGLAE  142 (211)
T ss_pred             EeCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhCC---cccCCCCcccEEEE-CCCEEEEECCccc
Confidence                              267889999999999999   99999999999999 7889999999886

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.48  E-value=1.5e-13  Score=117.65  Aligned_cols=104  Identities=22%  Similarity=0.183  Sum_probs=76.8

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCcc--chHHH----------------------HHHHHHHhhcCCCC--
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG--ASKSF----------------------MAECKALKNICHRN--  130 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~----------------------~~E~~~l~~l~h~n--  130 (356)
                      .+.||+|+||.||+|.+. +++.||||++......  ....+                      ..|...+..+.+..  
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            568999999999999987 6799999998643211  01111                      24454444432221  


Q ss_pred             --------------------------h------HHHHHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEc
Q 039228          131 --------------------------L------VRFISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIG  177 (356)
Q Consensus       131 --------------------------i------v~l~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~  177 (356)
                                                +      -....++.+++.++.++|. .+   |+|+||||+||+++ ++.++|+
T Consensus        81 ~~~~~~~~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~---ivH~Dl~p~Nili~-~~~~~li  156 (187)
T cd05119          81 VPKPIDLNRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAG---LVHGDLSEYNILVD-DGKVYII  156 (187)
T ss_pred             CCceEecCCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccC---cCcCCCChhhEEEE-CCcEEEE
Confidence                                      0      1225588899999999999 88   99999999999999 8999999


Q ss_pred             cccccccc
Q 039228          178 DFELARFR  185 (356)
Q Consensus       178 Dfg~a~~~  185 (356)
                      |||.+...
T Consensus       157 Dfg~a~~~  164 (187)
T cd05119         157 DVPQAVEI  164 (187)
T ss_pred             ECcccccc
Confidence            99999643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.46  E-value=1.2e-13  Score=137.25  Aligned_cols=109  Identities=20%  Similarity=0.165  Sum_probs=84.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEe-ecc-Cc------cchHHHHHHHHHHhhcCCCChHHH-------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVL-SIQ-CQ------GASKSFMAECKALKNICHRNLVRF-------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~-~~~-~~------~~~~~~~~E~~~l~~l~h~niv~l-------  134 (356)
                      ....|...+.||+|+||.||+|.+...  .+++|+. ... ..      ...+++.+|+.++..++|++++..       
T Consensus       331 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~--~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~  408 (535)
T PRK09605        331 VKRRKIPDHLIGKGAEADIKKGEYLGR--DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDP  408 (535)
T ss_pred             cccccCccceeccCCcEEEEEEeecCc--cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeC
Confidence            344566788999999999999988644  3444432 111 11      123467899999999999987653       


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                            ..++.+++.+|.+||+.+   ++||||||+||++ .++.++|+|||+++.
T Consensus       409 ~~~~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~g---iiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        409 EEKTIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKAG---IVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CCCEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhCC---CccCCCChHHEEE-ECCcEEEEeCccccc
Confidence                                  347789999999999999   9999999999999 578899999999974

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=4.7e-15  Score=147.50  Aligned_cols=220  Identities=23%  Similarity=0.226  Sum_probs=156.6

Q ss_pred             cCCCCccccceecCceEEEEEEECC-CCeEEEEEEeeccC--ccchHHHHHHHHHHhhcC-CCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-NRAVVAIKVLSIQC--QGASKSFMAECKALKNIC-HRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l------------  134 (356)
                      ...|.+.+.||.|+|+.|-...... ....+|+|.+....  .........|..+-..+. |+|++.+            
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            3457788889999999998877633 34566777765443  223344556777777777 9999987            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHh-hcCCCcEEecCCCCCCeEeCCCC-ceEEccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLH-HHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFR  185 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH-~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~  185 (356)
                                                 -.++.|+..++.|+| +.+   +.|+||||+|.+++..+ .++++|||+|...
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~---~~h~~ikP~n~~l~~s~~~l~~~df~~At~~  175 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENG---VTHRDIKPSNSLLDESGSALKIADFGLATAY  175 (601)
T ss_pred             ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccc---cccCCCCCccchhccCCCcccCCCchhhccc
Confidence                                       236788999999999 888   99999999999999999 9999999999866


Q ss_pred             ccCCCCCccCCCCccc-cccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          186 QEVSNPTQSSSNGVRR-TIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~g-t~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .... ..........| ++.|+|||...+. ...+..|+||.|+++.-+++|..|++...........|......  .. 
T Consensus       176 ~~~~-g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~-  251 (601)
T KOG0590|consen  176 RNKN-GAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGR--FT-  251 (601)
T ss_pred             cccC-CcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccc--cc-
Confidence            5421 11233344566 9999999999874 45678899999999999999999998665544333333222100  00 


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                         .....                      .......++..+++..+|..|.+.+++-.
T Consensus       252 ---~~~~~----------------------~~~~~~~~~l~k~l~~~~~~r~s~~~~~~  285 (601)
T KOG0590|consen  252 ---QLPWN----------------------SISDQAHDLLHKILKENPSNRLSIEELKL  285 (601)
T ss_pred             ---cCccc----------------------cCChhhhhcccccccCCchhccccccccc
Confidence               00000                      11113457778888889999998777643

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.34  E-value=3.4e-12  Score=113.52  Aligned_cols=102  Identities=16%  Similarity=0.141  Sum_probs=80.4

Q ss_pred             ccce-ecCceEEEEEEECCCCeEEEEEEeeccC-------------ccchHHHHHHHHHHhhcCCCChH--HH-------
Q 039228           78 NLIG-VGSFDAVYQGVFDLNRAVVAIKVLSIQC-------------QGASKSFMAECKALKNICHRNLV--RF-------  134 (356)
Q Consensus        78 ~~lg-~G~~g~Vy~~~~~~~~~~vavK~~~~~~-------------~~~~~~~~~E~~~l~~l~h~niv--~l-------  134 (356)
                      ..|| .||.|+||.+...  +..++||.+....             ......+.+|+.++.+|+|++|.  +.       
T Consensus        37 ~~lg~~~g~gtv~~v~~~--~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP--GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             ceeecCCCCccEEEEEeC--CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            4577 7888899988775  6789999885321             12234678899999999887741  11       


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ...+.+++.+|.+||..|   |+||||||.|||++.++.++|+|||.+..
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~~G---I~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHDAG---VYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHCC---CCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence                                          124668999999999999   99999999999999889999999998863

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.29  E-value=1.3e-11  Score=100.82  Aligned_cols=104  Identities=23%  Similarity=0.226  Sum_probs=83.8

Q ss_pred             ccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCC--ChHHH-------------------
Q 039228           76 LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHR--NLVRF-------------------  134 (356)
Q Consensus        76 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l-------------------  134 (356)
                      +.+.||.|.++.||++....  ..+++|.......  ...+..|+.++..++|.  +++++                   
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~--~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g   77 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD--EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEG   77 (155)
T ss_pred             cceecccccccceEEEEecC--CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCC
Confidence            45689999999999999863  7899999865433  45688899998888753  44433                   


Q ss_pred             -----------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -----------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -----------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                 ..++.+++.+|++||......++|+|++|.||+++..+.+++.|||.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~  137 (155)
T cd05120          78 ETLDEVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAG  137 (155)
T ss_pred             eecccCCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEeccccc
Confidence                       3467789999999998533349999999999999998999999999886

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.21  E-value=2.4e-11  Score=108.53  Aligned_cols=102  Identities=19%  Similarity=0.312  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCC
Q 039228          136 SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE  215 (356)
Q Consensus       136 ~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  215 (356)
                      +|+.||+.||.|||+. .++|+|+++..+.|++..+|-+|++--.....-...............+-++|.+||+-....
T Consensus       180 kw~tqIlsal~yLhs~-~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn  258 (458)
T KOG1266|consen  180 KWCTQILSALSYLHSC-DPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTN  258 (458)
T ss_pred             HHHHHHHhhhhhhhcc-CCccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccc
Confidence            4888999999999997 588999999999999999998887532221110000001111222344567899999877777


Q ss_pred             CCCccchHhHHHHHHHHHcCCCC
Q 039228          216 VSTNGDAYNYGILLLEMVTRRKP  238 (356)
Q Consensus       216 ~~~~sDiwSlG~~l~elltg~~P  238 (356)
                      .+..+|||+||....+|..|..-
T Consensus       259 ~~~a~dIy~fgmcAlemailEiq  281 (458)
T KOG1266|consen  259 TTGASDIYKFGMCALEMAILEIQ  281 (458)
T ss_pred             cccchhhhhhhHHHHHHHHheec
Confidence            78899999999999999988764

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=7.5e-12  Score=120.01  Aligned_cols=164  Identities=25%  Similarity=0.249  Sum_probs=123.5

Q ss_pred             CCCcccccee--cCceEEEEEEE--CCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcC-CCChHHH-----------
Q 039228           73 GFPLINLIGV--GSFDAVYQGVF--DLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNIC-HRNLVRF-----------  134 (356)
Q Consensus        73 ~~~~~~~lg~--G~~g~Vy~~~~--~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~l-----------  134 (356)
                      .|.+.+.+|.  |.+|.||.+..  ..+...+|+|.-+..  ......+=.+|+.....++ |+|.++.           
T Consensus       115 ~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lf  194 (524)
T KOG0601|consen  115 RFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILF  194 (524)
T ss_pred             hcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcce
Confidence            4677888999  99999999998  778899999984322  2222333345555555554 7777764           


Q ss_pred             --------------------------HHHHHHHHH----HHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEccccccc
Q 039228          135 --------------------------ISIAIDVAS----ALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELAR  183 (356)
Q Consensus       135 --------------------------~~i~~~i~~----aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~  183 (356)
                                                +.++.+...    ||.++|+..   ++|-|+||.||++..+ ...+++|||+..
T Consensus       195 iqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~---~~~~~~kp~~i~~~~~~~s~~~~df~~v~  271 (524)
T KOG0601|consen  195 IQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNN---IVHDDLKPANIFTTSDWTSCKLTDFGLVS  271 (524)
T ss_pred             eeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCc---ccccccchhheecccccceeecCCcceeE
Confidence                                      446667777    999999998   9999999999999988 899999999998


Q ss_pred             ccccCCCCCc-cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          184 FRQEVSNPTQ-SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       184 ~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                      .+........ .......|...|++||...+ -++..+|+|++|.++.+..+|..+..
T Consensus       272 ~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~  328 (524)
T KOG0601|consen  272 KISDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLPS  328 (524)
T ss_pred             EccCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhccccc
Confidence            7655442211 11123356778999998854 57889999999999999998877653

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.15  E-value=7.5e-10  Score=107.64  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=103.0

Q ss_pred             EEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHHHH--------------------------------H
Q 039228           90 QGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS--------------------------------I  137 (356)
Q Consensus        90 ~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~--------------------------------i  137 (356)
                      .|..+.++.+|.|...+...........+-++.|+.++||||+++++                                .
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~Pl~~~lk~l~~~~v~~G  109 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRPLETVLKELGKEEVCLG  109 (690)
T ss_pred             ccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccccHHHHHHHhHHHHHHHH
Confidence            46666778899999887665544455777889999999999999832                                3


Q ss_pred             HHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCC
Q 039228          138 AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS  217 (356)
Q Consensus       138 ~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  217 (356)
                      +.||+.||.|||+.+  .++|++|.-+.|+++..|..||++|.++........    .......-..|..|+.+....  
T Consensus       110 l~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~----~~~~~~~~~s~~~P~~~~~s~--  181 (690)
T KOG1243|consen  110 LFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA----PAKSLYLIESFDDPEEIDPSE--  181 (690)
T ss_pred             HHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc----ccccchhhhcccChhhcCccc--
Confidence            568999999999765  499999999999999999999999998864432221    111112223456666543322  


Q ss_pred             CccchHhHHHHHHHHHcCC
Q 039228          218 TNGDAYNYGILLLEMVTRR  236 (356)
Q Consensus       218 ~~sDiwSlG~~l~elltg~  236 (356)
                      ...|.|-||++++|++.|.
T Consensus       182 ~s~D~~~Lg~li~el~ng~  200 (690)
T KOG1243|consen  182 WSIDSWGLGCLIEELFNGS  200 (690)
T ss_pred             cchhhhhHHHHHHHHhCcc
Confidence            3459999999999999993

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=99.05  E-value=5.3e-09  Score=96.80  Aligned_cols=186  Identities=15%  Similarity=0.094  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhc--
Q 039228          135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL--  212 (356)
Q Consensus       135 ~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--  212 (356)
                      +.+++.++.+.+-||++|   .+-+|+.++|+|+++++.+.|.|-..-..-     .+.......+|...|.+||...  
T Consensus       120 lrvaRnlA~aFA~lH~~G---h~vGDVn~~~~lVsd~~~V~LVdsDsfqi~-----~ng~~~~cpVg~~eftPPElQ~~~  191 (637)
T COG4248         120 LRVARNLASAFATLHEHG---HVVGDVNQNSFLVSDDSKVVLVDSDSFQIN-----ANGTLHLCPVGVSEFTPPELQTLP  191 (637)
T ss_pred             HHHHHHHHHHHHHHHhcC---CcccccCccceeeecCceEEEEcccceeec-----cCCceEecccCccccCCHHHhccc
Confidence            668889999999999999   999999999999999999999875443221     1123344567888999999765  


Q ss_pred             ---CCCCCCccchHhHHHHHHHHHcC-CCCCCccccCCc---cHH-HHHHHhCCCchHHHhhhhhccccccccccccchh
Q 039228          213 ---GSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL---NLH-NFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNML  284 (356)
Q Consensus       213 ---~~~~~~~sDiwSlG~~l~elltg-~~Pf~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  284 (356)
                         +..-+...|.|.||+++++++.| +.||.+......   ... ......+...-.  ....+...        +.  
T Consensus       192 sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~--~~~g~~p~--------P~--  259 (637)
T COG4248         192 SFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASD--QRRGLKPP--------PR--  259 (637)
T ss_pred             cccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechh--ccCCCCCC--------CC--
Confidence               34456788999999999999886 999987543221   111 111111110000  00000000        00  


Q ss_pred             hhhchhhHHHHHHHHHHHHHhhcCC--CcCCCCChHHHHHHHHHhhhhhcc--ccccccCCcCC
Q 039228          285 RKTKMNSRLECLIFMVRIGAACSMG--SSQDRMNVPNAVHDLQSVNNILLP--ETVFKSLTNNR  344 (356)
Q Consensus       285 ~~~~~~~~~~~~~~l~~l~~~Cl~~--dP~~RPs~~~vl~~L~~i~~~~~~--~~~~~~~~~~~  344 (356)
                       +...   .-.+..+..+..+|+..  ++.-|||++..+..|.++.+++.+  ...+-.++++.
T Consensus       260 -~~P~---~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~~L~~C~v~a~H~y~~hl  319 (637)
T COG4248         260 -SIPL---SMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQQLKKCTVSAMHVYPVHL  319 (637)
T ss_pred             -CCCh---hhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHHhhhhhhhcccccccCCC
Confidence             0000   01222456677888765  367899999999999999998844  34433355544

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.04  E-value=9.7e-10  Score=106.21  Aligned_cols=47  Identities=21%  Similarity=0.244  Sum_probs=39.0

Q ss_pred             HHHHHHH-HHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          137 IAIDVAS-ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       137 i~~~i~~-aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                      ++..++. .+..+|..|   ++|+|++|.||+++.++.++++|||++..+.
T Consensus       261 ia~~~~~~~l~ql~~~g---~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       261 LAENLARSFLNQVLRDG---FFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             HHHHHHHHHHHHHHhCC---ceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            3444444 467889988   9999999999999999999999999997553

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.00  E-value=9.4e-10  Score=92.30  Aligned_cols=103  Identities=19%  Similarity=0.111  Sum_probs=78.1

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      .+.|+.|.++.||++...  +..|++|+...... ....+..|+.+++.+.+.++++-                      
T Consensus         3 ~~~l~~G~~~~vy~~~~~--~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~   79 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA--NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELL   79 (170)
T ss_pred             eeecCCcccCceEEEEEC--CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCccc
Confidence            457899999999999875  67899999754322 12345678888888765444321                      


Q ss_pred             ------HHHHHHHHHHHHHHhhcC--CCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 ------ISIAIDVASALDYLHHHC--QELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 ------~~i~~~i~~aL~~LH~~~--~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                            ..++.+++.+|+.||..+  ...++|+|++|.||+++ ++.++++|||.+.
T Consensus        80 ~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          80 TEDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             cccccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence                  235678999999999986  11259999999999999 6689999999885

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=4.7e-10  Score=109.39  Aligned_cols=162  Identities=15%  Similarity=0.250  Sum_probs=101.3

Q ss_pred             hhcCCCCccccceecCce---EEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCC-ChHHH----HHHHHH
Q 039228           69 KATDGFPLINLIGVGSFD---AVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHR-NLVRF----ISIAID  140 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g---~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~-niv~l----~~i~~~  140 (356)
                      ....+|+..+.+|..+-|   .+|.+.....+.....|..-.      ..+.....-+++++|. ++.+-    +.=+.+
T Consensus        34 ~~~~~~~~~~~~~~~g~g~~~~ly~~~~~~sk~~~~~~s~~~------~~ld~~~~~~~~lr~~~~vs~aTe~~f~nl~~  107 (700)
T KOG2137|consen   34 KESQSYRSLNQVGSAGPGDAWKLYAGKKSGSKAPTLKKSAVV------WMLDKRASSLQQLRGLDGVSKATEDGFANLGN  107 (700)
T ss_pred             ccccccccccceeecCCCchhhhhhhhccCccCccccceeee------eecChhhhHHHHHhcccchhhcccHhhhhhhc
Confidence            446678887777765544   566666554444432221110      0011112223333331 11111    222334


Q ss_pred             HHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC-----CCccCCCCccccccccchhhhcCCC
Q 039228          141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN-----PTQSSSNGVRRTIGYTALDYDLGSE  215 (356)
Q Consensus       141 i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~-----~~~~~~~~~~gt~~y~aPE~~~~~~  215 (356)
                      ++.||.|+|...  .+||++|.|++|.++.++..||+.|+++........     ..............|.|||++.+..
T Consensus       108 v~dgl~flh~sA--k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~  185 (700)
T KOG2137|consen  108 VADGLAFLHRSA--KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTT  185 (700)
T ss_pred             ccchhhhhccCc--ceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcccc
Confidence            668999999865  499999999999999999999999999865433111     1111222233456799999999988


Q ss_pred             CCCccchHhHHHHHHHHHcCCCC
Q 039228          216 VSTNGDAYNYGILLLEMVTRRKP  238 (356)
Q Consensus       216 ~~~~sDiwSlG~~l~elltg~~P  238 (356)
                      .+.++|+||+|+++|.+..|..+
T Consensus       186 ~~~~sd~fSlG~li~~i~~~gk~  208 (700)
T KOG2137|consen  186 NTPASDVFSLGVLIYTIYNGGKS  208 (700)
T ss_pred             ccccccceeeeeEEEEEecCCcc
Confidence            89999999999999999954443

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.84  E-value=1e-08  Score=100.65  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=30.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeec
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI  107 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~  107 (356)
                      ..|+. +.||+|++|+||+|+.+.+|+.||||+...
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP  154 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRP  154 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCc
Confidence            35776 789999999999999998789999999863

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=2.3e-09  Score=103.13  Aligned_cols=163  Identities=21%  Similarity=0.204  Sum_probs=114.8

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEEC-CCCeEEEEEEeeccCccchHH--HHHHHHHHhhcC-CCChHHH--------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFD-LNRAVVAIKVLSIQCQGASKS--FMAECKALKNIC-HRNLVRF--------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~~~~~~--~~~E~~~l~~l~-h~niv~l--------  134 (356)
                      ....+.+|..+..||.|.|+.|+..... .++..|++|.+.........+  -..|+.+...+. |.+++.+        
T Consensus       260 ~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r  339 (524)
T KOG0601|consen  260 TSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR  339 (524)
T ss_pred             ceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccc
Confidence            3445678999999999999999988765 678899999876443322222  123444444332 4444442        


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEcccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARF  184 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~~  184 (356)
                                                   +.+..+++.++.++|+..   ++|+|++|+||++..+ +..+++|||.+..
T Consensus       340 ~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~---~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  340 QGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKL---FVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             cccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchh---hhcccccccceeeccchhhhhccccccccc
Confidence                                         456778999999999988   9999999999999876 8889999999864


Q ss_pred             cccCCCCCccCCCCccccccc-cchhhhcCCCCCCccchHhHHHHHHHHHcCCCC
Q 039228          185 RQEVSNPTQSSSNGVRRTIGY-TALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP  238 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y-~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~P  238 (356)
                      +......      ....+..| .++.......+..+.|++|||..+.+..+|..-
T Consensus       417 ~~~~~~~------~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~l  465 (524)
T KOG0601|consen  417 LAFSSGV------FHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPL  465 (524)
T ss_pred             cceeccc------ccccccccccchhhccccccccccccccccccccccccCccc
Confidence            3221110      01112233 355555667788999999999999999998654

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.79  E-value=2.2e-08  Score=85.78  Aligned_cols=104  Identities=20%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             cccceecCceEEEEEEECC------CCeEEEEEEeeccC------------c----------cchHHH----HHHHHHHh
Q 039228           77 INLIGVGSFDAVYQGVFDL------NRAVVAIKVLSIQC------------Q----------GASKSF----MAECKALK  124 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~------~~~~vavK~~~~~~------------~----------~~~~~~----~~E~~~l~  124 (356)
                      ...||.|--+.||.|....      .+..+|||+++...            .          ...+.+    .+|++.|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            4578999999999998653      24799999985321            0          001122    26888888


Q ss_pred             hcCCCC-----hH------------------------------HHHHHHHHHHHHHHHH-hhcCCCcEEecCCCCCCeEe
Q 039228          125 NICHRN-----LV------------------------------RFISIAIDVASALDYL-HHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       125 ~l~h~n-----iv------------------------------~l~~i~~~i~~aL~~L-H~~~~~~iiH~Dlkp~NIll  168 (356)
                      ++.--+     ++                              .+..+..+++.+|..| |..+   |||+||++.||++
T Consensus        82 rl~~~Gv~vP~pi~~~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~g---lVHGDLs~~NIL~  158 (197)
T cd05146          82 RMQKAGIPCPEVVVLKKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECN---LVHADLSEYNMLW  158 (197)
T ss_pred             HHHHcCCCCCeEEEecCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEE
Confidence            774211     00                              0134567899999988 8888   9999999999999


Q ss_pred             CCCCceEEcccccccc
Q 039228          169 DNDLFAHIGDFELARF  184 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~  184 (356)
                      + ++.+.|+|||.+..
T Consensus       159 ~-~~~v~iIDF~qav~  173 (197)
T cd05146         159 H-DGKVWFIDVSQSVE  173 (197)
T ss_pred             E-CCcEEEEECCCcee
Confidence            7 46799999998853

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.78  E-value=2.4e-09  Score=108.53  Aligned_cols=170  Identities=21%  Similarity=0.232  Sum_probs=118.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..+++.+.+.+-+|.++.++.+.-..++...++|+.....   ....+....+-.++-...+|.+++.            
T Consensus       802 S~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L  881 (1205)
T KOG0606|consen  802 SPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPL  881 (1205)
T ss_pred             CCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcch
Confidence            4567888889999999999988776666555555543211   1111222222222222233333321            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ......+..+++|||...   ++|+|++|.|+++..++..+++|||.........
T Consensus       882 ~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~---r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~  958 (1205)
T KOG0606|consen  882 VGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSL---RKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIP  958 (1205)
T ss_pred             hhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccch---hhcccccccchhhcccCCcccCcccccccccccc
Confidence                                     124456788999999987   8999999999999999999999998443221100


Q ss_pred             ----------------------CC-----CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          190 ----------------------NP-----TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       190 ----------------------~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                                            ..     .........+|+.|.+||...+......+|+|++|++++|.++|.+||+..
T Consensus       959 p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~ 1038 (1205)
T KOG0606|consen  959 PTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAE 1038 (1205)
T ss_pred             CcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCc
Confidence                                  00     012234567899999999999999999999999999999999999999743

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.46  E-value=9e-07  Score=73.91  Aligned_cols=101  Identities=21%  Similarity=0.235  Sum_probs=72.4

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEe-eccCc--c-----chHHHHHHHHHHhhcCC-----CChHHH----------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVL-SIQCQ--G-----ASKSFMAECKALKNICH-----RNLVRF----------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~-~~~~~--~-----~~~~~~~E~~~l~~l~h-----~niv~l----------  134 (356)
                      ..+++|+-+.+|.+.+.  +..+++|.= ++.-.  .     ...+..+|++++.++.-     |-+.-+          
T Consensus         2 ~~i~~GAEa~i~~~~~~--g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me   79 (204)
T COG3642           2 DLIKQGAEAIIYLTDFL--GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVME   79 (204)
T ss_pred             chhhCCcceeEEeeecc--CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEE
Confidence            35789999999999775  445666653 22111  1     12345678888887642     211110          


Q ss_pred             ---------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ---------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ---------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                     ..++..+-.-+.-||..|   |||+||.++||++..++ +.++|||++.+
T Consensus        80 ~I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~g---ivHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          80 YIEGELLKDALEEARPDLLREVGRLVGKLHKAG---IVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             EeCChhHHHHHHhcchHHHHHHHHHHHHHHhcC---eecCCCccceEEEeCCc-EEEEECCcccc
Confidence                           357788888999999999   99999999999998765 88999999963

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.42  E-value=5.6e-06  Score=78.96  Aligned_cols=130  Identities=18%  Similarity=0.233  Sum_probs=100.5

Q ss_pred             ceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------------------------
Q 039228           85 FDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------------------------  134 (356)
Q Consensus        85 ~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------------------------  134 (356)
                      -.+.|++....+|..|++|+++............-++..+++.|+|+|++                              
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~  368 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDL  368 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHH
Confidence            35789999999999999999964433333334455788999999999998                              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.|+..||.++|+.|   +.-+-|.+.+|+++.+.+++|+..|....+..
T Consensus       369 ~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssG---LAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~  445 (655)
T KOG3741|consen  369 YFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSG---LACKTLDLKKILVTGKMRIRISGCGIMDVLQE  445 (655)
T ss_pred             HccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcC---ceeecccHhHeEeeCcceEEEecccceeeecC
Confidence                                       568899999999999999   88899999999999998999987777654432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCC
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP  238 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~P  238 (356)
                      ...                  +.+..   -.+-|.=.||.+++.|.||..-
T Consensus       446 d~~------------------~~le~---~Qq~D~~~lG~ll~aLAt~~~n  475 (655)
T KOG3741|consen  446 DPT------------------EPLES---QQQNDLRDLGLLLLALATGTEN  475 (655)
T ss_pred             CCC------------------cchhH---HhhhhHHHHHHHHHHHhhcccc
Confidence            210                  11111   1345888999999999999654

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.33  E-value=1.9e-06  Score=71.89  Aligned_cols=103  Identities=27%  Similarity=0.310  Sum_probs=76.2

Q ss_pred             ccccceecCceEEEEEEECCCCeEEEEEEe-eccC-------ccchHHHHHHHHHHhhcC-----CCChHH---------
Q 039228           76 LINLIGVGSFDAVYQGVFDLNRAVVAIKVL-SIQC-------QGASKSFMAECKALKNIC-----HRNLVR---------  133 (356)
Q Consensus        76 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~-~~~~-------~~~~~~~~~E~~~l~~l~-----h~niv~---------  133 (356)
                      ....|-+|+-+.|+++.+.  |+...||.- .+..       .-..++..+|+++|.++.     -|-+.-         
T Consensus        11 ~l~likQGAEArv~~~~~~--Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~   88 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS--GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIY   88 (229)
T ss_pred             cceeeeccceeeEeeeccC--CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEE
Confidence            5678999999999999987  677777753 2221       112356778998888763     222111         


Q ss_pred             ------------H--------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC---ceEEccccccc
Q 039228          134 ------------F--------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL---FAHIGDFELAR  183 (356)
Q Consensus       134 ------------l--------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~---~~kl~Dfg~a~  183 (356)
                                  +              ..++..|-..+.-||..+   |||+||..+||++..++   .+.++|||++.
T Consensus        89 ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~nd---iiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   89 MEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDND---IIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             EEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCC---eecccccccceEEecCCCcCceEEEeecchh
Confidence                        1              357788999999999999   99999999999996544   45899999985

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.23  E-value=1.4e-05  Score=68.08  Aligned_cols=92  Identities=22%  Similarity=0.232  Sum_probs=62.3

Q ss_pred             EEEEEEECCCCeEEEEEEeeccC--------------c-------c-----chHHHHHHHHHHhhcCCCCh--HHH----
Q 039228           87 AVYQGVFDLNRAVVAIKVLSIQC--------------Q-------G-----ASKSFMAECKALKNICHRNL--VRF----  134 (356)
Q Consensus        87 ~Vy~~~~~~~~~~vavK~~~~~~--------------~-------~-----~~~~~~~E~~~l~~l~h~ni--v~l----  134 (356)
                      .||.|.... +..+|||+.....              .       .     ......+|.+.|.++..-++  .+.    
T Consensus         1 ~Vy~~~~~~-~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~   79 (188)
T PF01163_consen    1 DVYHAIDPD-GEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN   79 (188)
T ss_dssp             EEEEEEECT-TEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE
T ss_pred             CEEEEECCC-CCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe
Confidence            389998854 5899999985320              0       0     01245679999999875432  221    


Q ss_pred             -----------------------------HHHHHHHHHHHHH-HhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -----------------------------ISIAIDVASALDY-LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~-LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                   ..++.+++..+.. +|..|   |+|+||.+.||+++++ .+.|+|||.+.
T Consensus        80 ~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~g---ivHGDLs~~NIlv~~~-~~~iIDf~qav  154 (188)
T PF01163_consen   80 RNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAG---IVHGDLSEYNILVDDG-KVYIIDFGQAV  154 (188)
T ss_dssp             TTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTT---EEESS-STTSEEEETT-CEEE--GTTEE
T ss_pred             CCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcC---ceecCCChhhEEeecc-eEEEEecCcce
Confidence                                         3466777775555 57888   9999999999999987 89999999885

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.15  E-value=1.1e-05  Score=70.27  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=77.4

Q ss_pred             ccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCCh--HHH--------------------
Q 039228           78 NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNL--VRF--------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~ni--v~l--------------------  134 (356)
                      +.|+.|.++.||++.... |..+++|....... .....+..|+.++..+.+.++  .++                    
T Consensus         4 ~~l~~G~~n~~~~v~~~~-g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG-GRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             eecCCCccceEEEEEecC-CcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            568999999999998754 47899999764322 134567889998888764221  211                    


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcC-------------------------------------------
Q 039228          135 -------------------ISIAIDVASALDYLHHHC-------------------------------------------  152 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~-------------------------------------------  152 (356)
                                         ..++.+++.+|..||+..                                           
T Consensus        83 ~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (223)
T cd05154          83 DGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLR  162 (223)
T ss_pred             CCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence                               145778888999988531                                           


Q ss_pred             ----------CCcEEecCCCCCCeEeCC--CCceEEccccccc
Q 039228          153 ----------QELILHCDPKPSNVLLDN--DLFAHIGDFELAR  183 (356)
Q Consensus       153 ----------~~~iiH~Dlkp~NIll~~--~~~~kl~Dfg~a~  183 (356)
                                ...++|+|+.|.||+++.  ++.+.|+||+.+.
T Consensus       163 ~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         163 WLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             HHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                      123799999999999998  6678999999885

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.00  E-value=3.7e-05  Score=68.19  Aligned_cols=106  Identities=20%  Similarity=0.129  Sum_probs=75.8

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc----------------------cchHHHHHHHHHHhhcCCC-
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ----------------------GASKSFMAECKALKNICHR-  129 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----------------------~~~~~~~~E~~~l~~l~h~-  129 (356)
                      -..+...||.|.-+.||.|.... +..+|||.-.....                      -......+|.++|.+|... 
T Consensus        92 ve~iG~~IGvGKEsdVY~~~~~~-g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G  170 (304)
T COG0478          92 VEAIGTKIGVGKESDVYVAIDPK-GRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEG  170 (304)
T ss_pred             HHhhccccccCccceEEEEECCC-CCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcC
Confidence            35677899999999999999874 58999997532110                      0112346788888888422 


Q ss_pred             -ChHHH----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          130 -NLVRF----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       130 -niv~l----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                       .+.+.                            -.++..|+.-+.-+-..|   |||+|+++-||+++++|.+.++||=
T Consensus       171 ~~VP~P~~~nRHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~~~~~G---iVHGDlSefNIlV~~dg~~~vIDwP  247 (304)
T COG0478         171 VKVPKPIAWNRHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRKAYRRG---IVHGDLSEFNILVTEDGDIVVIDWP  247 (304)
T ss_pred             CCCCCccccccceeeeehcccceeecccCcccCHHHHHHHHHHHHHHHHHcC---ccccCCchheEEEecCCCEEEEeCc
Confidence             11111                            235556666666555778   9999999999999999999999996


Q ss_pred             cc
Q 039228          181 LA  182 (356)
Q Consensus       181 ~a  182 (356)
                      -+
T Consensus       248 Q~  249 (304)
T COG0478         248 QA  249 (304)
T ss_pred             cc
Confidence            55

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.90  E-value=5.2e-05  Score=68.47  Aligned_cols=45  Identities=27%  Similarity=0.214  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-------CCceEEccccccc
Q 039228          136 SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-------DLFAHIGDFELAR  183 (356)
Q Consensus       136 ~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-------~~~~kl~Dfg~a~  183 (356)
                      .++.+++..+.-||..|   |+|+|++++|||++.       ++.+.|+||+.+.
T Consensus       142 ~ll~~la~~i~~LH~~G---i~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        142 MLIKRVATMVRDMHAAG---INHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             HHHHHHHHHHHHHHHCc---CccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence            35567899999999999   999999999999975       4688999999885

>PRK09902 hypothetical protein; Provisional

Probab=97.88  E-value=4.7e-05  Score=65.67  Aligned_cols=100  Identities=13%  Similarity=0.075  Sum_probs=75.1

Q ss_pred             ceecCceEEEEEEECCCCeEEEEEEeeccC------ccchHHHHHHHHHHhhcCCCChH--HH-----------------
Q 039228           80 IGVGSFDAVYQGVFDLNRAVVAIKVLSIQC------QGASKSFMAECKALKNICHRNLV--RF-----------------  134 (356)
Q Consensus        80 lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv--~l-----------------  134 (356)
                      -|+||.+-|+.....  |..+-+|.-....      .-....|.+|+..|.+|..-++.  +.                 
T Consensus        26 ~~rgG~SgV~r~~~~--g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LV  103 (216)
T PRK09902         26 YRRNGMSGVQCVERN--GKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLV  103 (216)
T ss_pred             cCCCCcceEEEEEeC--CcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEE
Confidence            478999999997765  3467778753110      22456899999999888532222  11                 


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc--eEEcccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF--AHIGDFELARF  184 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~--~kl~Dfg~a~~  184 (356)
                                                 -.++.+++..+.-||..|   +.|+|+.+.||+++..+.  +.++||.-++.
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~G---v~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVN---RQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence                                       146778999999999999   999999999999986666  89999987763

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.61  E-value=0.00057  Score=60.08  Aligned_cols=124  Identities=21%  Similarity=0.192  Sum_probs=81.6

Q ss_pred             hcccCChhhHHHHHhhcCCCCccccce---ecCceEEEEEEECCCCeEEEEEEeeccCccc-------------------
Q 039228           55 LRNAIPKEYYESLLKATDGFPLINLIG---VGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA-------------------  112 (356)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~lg---~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-------------------  112 (356)
                      ...-+...+...+....++..+....|   .|.-+.||+|... ++..+|+|++.......                   
T Consensus        28 ~~~v~D~~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~-~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~  106 (268)
T COG1718          28 VDEVFDKRTLETLRRLLSRGVITELVGCISTGKEANVYLAETG-DGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSN  106 (268)
T ss_pred             hhhhhhhHHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccC-CCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCC
Confidence            334455566666666666666666555   5666689998863 46899999996432111                   


Q ss_pred             hH-----HHHHHHHHHhhcCCC------------ChHH-----------------------HHHHHHHHHHHHHHHhh-c
Q 039228          113 SK-----SFMAECKALKNICHR------------NLVR-----------------------FISIAIDVASALDYLHH-H  151 (356)
Q Consensus       113 ~~-----~~~~E~~~l~~l~h~------------niv~-----------------------l~~i~~~i~~aL~~LH~-~  151 (356)
                      ..     ....|+.-|+++.-.            |++-                       ...+..+++..+.-|-. .
T Consensus       107 rr~lv~~W~~kEf~NL~R~~eAGVrvP~Pi~~~~nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a  186 (268)
T COG1718         107 RRKLVFAWARKEFRNLKRAYEAGVRVPEPIAFRNNVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEA  186 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCceeecCCeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhc
Confidence            01     123466666655211            1110                       03456677777777766 6


Q ss_pred             CCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          152 CQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       152 ~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      +   +||+||+.-|||+. ++.+.|+|||-|.
T Consensus       187 ~---LVHgDLSEyNiL~~-~~~p~iID~~QaV  214 (268)
T COG1718         187 G---LVHGDLSEYNILVH-DGEPYIIDVSQAV  214 (268)
T ss_pred             C---cccccchhhheEEE-CCeEEEEECcccc
Confidence            6   99999999999999 8899999999885

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.58  E-value=1.8e-05  Score=77.33  Aligned_cols=150  Identities=15%  Similarity=0.062  Sum_probs=110.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCC-hHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN-LVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l---------------  134 (356)
                      +..+...+-+++|+++.+++.+...+...+ .+.+...     .....++++|.+++||| .++.               
T Consensus       241 ~kws~~fh~fvK~altknpKkRptaeklL~-h~fvs~~-----l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~  314 (829)
T KOG0576|consen  241 TKWSEFFHNFVKGALTKNPKKRPTAEKLLQ-HPFVSQT-----LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMR  314 (829)
T ss_pred             ccchHHHHHHHHHHhcCCCccCCChhhhee-ceeeccc-----hhhHHHHHHHHHccCCCCcccccccCCcccccchhhh
Confidence            344556667899999999998876553333 5554422     34456889999999999 4433               


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..+++.-+.+|++||+..   =+|+|    ||+..+ +..+.+||+....+.... 
T Consensus       315 i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~~---~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~-  385 (829)
T KOG0576|consen  315 ICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSSY---KVHRD----NILGSE-EEVKLLDFAVPPQLTRTM-  385 (829)
T ss_pred             hhcCCccccccCChhhHhhhhhhhhhhhhhhccccccccccc---ccCcc----cccccc-cccccccccCCcccCccc-
Confidence                                    124445667899999864   48888    777654 678999999887554322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCC
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI  239 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf  239 (356)
                          ......+++.++|||+...+.+....|.|++|+--.+|.-|.+|-
T Consensus       386 ----~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr  430 (829)
T KOG0576|consen  386 ----KPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPR  430 (829)
T ss_pred             ----ccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCC
Confidence                344577899999999999999999999999998777887777764

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.51  E-value=0.00037  Score=68.47  Aligned_cols=36  Identities=28%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             HhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       148 LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                      +-..|   +.|.|..|.||+++.+|.+.+.|||+...+.
T Consensus       281 ~~~dg---ffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~  316 (517)
T COG0661         281 LLRDG---FFHADPHPGNILVRSDGRIVLLDFGIVGRLD  316 (517)
T ss_pred             HHhcC---ccccCCCccceEEecCCcEEEEcCcceecCC
Confidence            33456   9999999999999999999999999987553

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.49  E-value=0.00011  Score=63.87  Aligned_cols=47  Identities=32%  Similarity=0.388  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC---ceEEcccccccc
Q 039228          135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL---FAHIGDFELARF  184 (356)
Q Consensus       135 ~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~---~~kl~Dfg~a~~  184 (356)
                      -.++.+++..+.-||..|   |+|+|+++.|||++.++   .+.|+||+.++.
T Consensus       121 ~~ll~~l~~~i~~lH~~g---i~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  121 RELLRALARLIAKLHDAG---IYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHCc---CCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            567889999999999999   99999999999999877   889999998764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.44  E-value=0.0011  Score=57.57  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHH---------HHHHHHHhhcC---CCChHHH---
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSF---------MAECKALKNIC---HRNLVRF---  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~---------~~E~~~l~~l~---h~niv~l---  134 (356)
                      ..++|.+.+++-......|.+-...  +..+++|..........+.|         .+.+..+.+++   -..+..+   
T Consensus        29 ~~~~~~~~kv~k~~~r~~ValIei~--~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~  106 (229)
T PF06176_consen   29 LDNNYKIIKVFKNTKRNYVALIEID--GKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLA  106 (229)
T ss_pred             HhCCceEEEeecCCCccEEEEEEEC--CcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceee
Confidence            4567888888888877777766654  68899998764332221111         12222222221   1111111   


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     -.+...+..++.-||..|   +.|+|..|.|+++++++ +++.||+..+
T Consensus       107 ~ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~e~~~~ki~~~ikqlH~~G---~~HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  107 AEKKIFRYTSSYVLLMEYIEGVELNDIEDIDEDLAEKIVEAIKQLHKHG---FYHGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             eeeeeccceeEEEEEEEEecCeecccchhcCHHHHHHHHHHHHHHHHcC---CccCCCCcCcEEEECCc-EEEEECcccc
Confidence                                           023456889999999999   99999999999999655 8899998765

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.24  E-value=0.0017  Score=54.19  Aligned_cols=104  Identities=23%  Similarity=0.246  Sum_probs=70.1

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHH-----------H--------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR-----------F--------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------l--------  134 (356)
                      ....+.|++|.+|.||++.+.  |..+|+|+=...  .....+..|+++|..+..-++.+           +        
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~~--~~~~a~Kvrr~d--s~r~~l~kEakiLeil~g~~~~p~vy~yg~~~i~me~i~G~~L   99 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEWR--GGEVALKVRRRD--SPRRNLEKEAKILEILAGEGVTPEVYFYGEDFIRMEYIDGRPL   99 (201)
T ss_pred             hhhhhhhhcccccEEEEeecc--CceEEEEEecCC--cchhhHHHHHHHHHHhhhcCCCceEEEechhhhhhhhhcCcch
Confidence            345678999999999999987  668999985432  33467888999888776433221           1        


Q ss_pred             ---H-----HHHHHHHHHHHHHhhcCCCcEEecCCC-CCCeEeCCCCceEEcccccccc
Q 039228          135 ---I-----SIAIDVASALDYLHHHCQELILHCDPK-PSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ---~-----~i~~~i~~aL~~LH~~~~~~iiH~Dlk-p~NIll~~~~~~kl~Dfg~a~~  184 (356)
                         .     .-...++.+---|-..|   |-|..|. |..++|..++.+.|+||..|+.
T Consensus       100 ~~~~~~~~rk~l~~vlE~a~~LD~~G---I~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112         100 GKLEIGGDRKHLLRVLEKAYKLDRLG---IEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhc---cchhhhcCCceeEEecCCcEEEEEccchhh
Confidence               1     11233444444455666   8888886 4445555555899999999874

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=97.07  E-value=0.0025  Score=54.64  Aligned_cols=101  Identities=25%  Similarity=0.378  Sum_probs=73.1

Q ss_pred             CCCCccccceecCc-eEEEEEEECCCCeEEEEEEeec---cCc------------------cchHHHHHHHHHHhhcC--
Q 039228           72 DGFPLINLIGVGSF-DAVYQGVFDLNRAVVAIKVLSI---QCQ------------------GASKSFMAECKALKNIC--  127 (356)
Q Consensus        72 ~~~~~~~~lg~G~~-g~Vy~~~~~~~~~~vavK~~~~---~~~------------------~~~~~~~~E~~~l~~l~--  127 (356)
                      .+++.++.||.|.. |.||++...  |+.+|+|++..   ...                  ....-|..|.+...+|+  
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I~--g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEID--GRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEEC--CeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            67999999999999 999999987  78999999421   100                  11224667777666554  


Q ss_pred             -CCCh--HHH------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCC
Q 039228          128 -HRNL--VRF------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPK  162 (356)
Q Consensus       128 -h~ni--v~l------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlk  162 (356)
                       +.++  |+.                                          ..-+.+|.+-|..+|..|   |+-+|++
T Consensus       115 ~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~~~~~~~~~~~~~dl~~~~k~g---I~~~Dv~  191 (207)
T PF13095_consen  115 GREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDPPLQIRDIPQMLRDLKILHKLG---IVPRDVK  191 (207)
T ss_pred             cccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCccccchhHHHHHHHHHHHHHHCC---eeeccCc
Confidence             2233  222                                          123456888899999999   9999999


Q ss_pred             CCCeEeCCCCceEEcccccc
Q 039228          163 PSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       163 p~NIll~~~~~~kl~Dfg~a  182 (356)
                      +.|..     .-+|+|||.+
T Consensus       192 ~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  192 PRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             ccccc-----CCEEEecccC
Confidence            99987     3478999865

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=96.99  E-value=0.0037  Score=54.63  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC  127 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  127 (356)
                      ++.|+.|..+.||+.....  ..+++|.....  .....+..|..+++.+.
T Consensus         2 i~~l~~G~~n~~~~v~~~~--~~~vlK~~~~~--~~~~~~~~e~~~~~~l~   48 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD--GRYVLKFYRPP--DAAERLRREAAVLRQLA   48 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT--SEEEEEEESSH--HHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCeeeEEEEEECC--cEEEEEEeCCC--CCHHHHHHHHHHHHHHH
Confidence            4578999999999999874  48899997543  34456777888777764

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=96.97  E-value=0.0036  Score=55.14  Aligned_cols=27  Identities=19%  Similarity=0.026  Sum_probs=24.8

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ++|+|+.|.||++++++ +.|+||+.+.
T Consensus       155 ~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       155 CLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             eEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            78999999999999888 9999999875

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.68  E-value=0.006  Score=54.71  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ++|+|+.|.||++++++ +.|+||+.+.
T Consensus       148 l~H~Dl~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       148 PLHMDVHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             eecCCCCcCcEEEeCCC-CEEEeccccC
Confidence            79999999999999877 7899999885

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=96.54  E-value=0.012  Score=62.06  Aligned_cols=164  Identities=15%  Similarity=0.144  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhcCCCChHHH-----------------------------------------HHHHHHHHHHHHHHhhcCCC
Q 039228          116 FMAECKALKNICHRNLVRF-----------------------------------------ISIAIDVASALDYLHHHCQE  154 (356)
Q Consensus       116 ~~~E~~~l~~l~h~niv~l-----------------------------------------~~i~~~i~~aL~~LH~~~~~  154 (356)
                      ...|...+..+.|+|++.+                                         ..+..++..||.|+|+..  
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~~i~~~~~r~~~~~~~~GL~~~h~~~--  306 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVGSIPLETLRILHQKLLEGLAYLHSLS--  306 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhccccCHHHHHHHHHHHhhhHHHHHHhc--
Confidence            3456777888899999876                                         225567889999999985  


Q ss_pred             cEEecCCCCC---CeEeCCCCceEEc--ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCc--cchHhHHH
Q 039228          155 LILHCDPKPS---NVLLDNDLFAHIG--DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN--GDAYNYGI  227 (356)
Q Consensus       155 ~iiH~Dlkp~---NIll~~~~~~kl~--Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~--sDiwSlG~  227 (356)
                       ..|.-+..+   +.-.+..+.+.++  ||+..+.+......     .....+..+.++|......+..+  .|+|.+|.
T Consensus       307 -l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~-----~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgl  380 (1351)
T KOG1035|consen  307 -LEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKS-----FSDLLAEIRNADEDLKENTAKKSRLTDLWCLGL  380 (1351)
T ss_pred             -cceeEEecccccccccCccceeecchhhhcccccCCCcccc-----hhhcCccccccccccccccchhhhhhHHHHHHH
Confidence             555544444   3444556666666  88887755432211     11222445677777766555444  69999999


Q ss_pred             HHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhc
Q 039228          228 LLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACS  307 (356)
Q Consensus       228 ~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl  307 (356)
                      ....+..|..+-...                .....+++..                          ....+......|+
T Consensus       381 l~~~~~~~~~i~~~~----------------~~~~~~l~~~--------------------------~~~~~~d~~~~~~  418 (1351)
T KOG1035|consen  381 LLLQLSQGEDISEKS----------------AVPVSLLDVL--------------------------STSELLDALPKCL  418 (1351)
T ss_pred             HHhhhhhcCcccccc----------------cchhhhhccc--------------------------cchhhhhhhhhhc
Confidence            999998876652210                0001111110                          0003457788999


Q ss_pred             CCCcCCCCChHHHHHHHHHhhh
Q 039228          308 MGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       308 ~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      ..++++|+++.+++...-.-..
T Consensus       419 ~~~~~~Rl~~~~ll~~~f~~~~  440 (1351)
T KOG1035|consen  419 DEDSEERLSALELLTHPFLRFP  440 (1351)
T ss_pred             chhhhhccchhhhhhchhcccc
Confidence            9999999999999987644333

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.40  E-value=0.018  Score=50.69  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=25.8

Q ss_pred             cEEecCCCCCCeEeCC-CCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDN-DLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~  183 (356)
                      .++|+|+.+.|||++. ++.+.|+||..|.
T Consensus       171 ~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         171 VFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            3899999999999997 5789999998874

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.06  E-value=0.02  Score=52.46  Aligned_cols=28  Identities=36%  Similarity=0.510  Sum_probs=25.6

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ++|+|+.|.||++++++.+.|.||+.+.
T Consensus       177 l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         177 VIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             CCccCcCcccEEEeCCceEEEeehhhhc
Confidence            8999999999999988777899999874

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=95.79  E-value=0.02  Score=52.60  Aligned_cols=106  Identities=19%  Similarity=0.200  Sum_probs=72.4

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-----------------ccc---h--HHHHHHHHHHhhcC---
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----------------QGA---S--KSFMAECKALKNIC---  127 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----------------~~~---~--~~~~~E~~~l~~l~---  127 (356)
                      -+.+++.||-|.-+-||.+.+.. |++.++|.-....                 ...   .  -...+|...|+.|.   
T Consensus        93 v~svGnqIGVGKESDIY~v~d~~-G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~g  171 (465)
T KOG2268|consen   93 VESVGNQIGVGKESDIYVVADEE-GNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERG  171 (465)
T ss_pred             hhhhccccccccccceEEEecCC-CCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            46788899999999999998865 4788888643110                 000   0  12345777777662   


Q ss_pred             -----------CCChHHH---------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          128 -----------HRNLVRF---------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       128 -----------h~niv~l---------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                 |--|..+               -.++..+..-+--|.++|   +||+|..--||++++++.++++||=-
T Consensus       172 fpVPkpiD~~RH~Vvmelv~g~Pl~~v~~v~d~~~ly~~lm~~Iv~la~~G---lIHgDFNEFNimv~dd~~i~vIDFPQ  248 (465)
T KOG2268|consen  172 FPVPKPIDHNRHCVVMELVDGYPLRQVRHVEDPPTLYDDLMGLIVRLANHG---LIHGDFNEFNIMVKDDDKIVVIDFPQ  248 (465)
T ss_pred             CCCCCcccccceeeHHHhhcccceeeeeecCChHHHHHHHHHHHHHHHHcC---ceecccchheeEEecCCCEEEeechH
Confidence                       1112222               124444555566788889   99999999999999999999999954


Q ss_pred             c
Q 039228          182 A  182 (356)
Q Consensus       182 a  182 (356)
                      .
T Consensus       249 m  249 (465)
T KOG2268|consen  249 M  249 (465)
T ss_pred             h
Confidence            4

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=95.74  E-value=0.081  Score=52.23  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=26.9

Q ss_pred             EEecCCCCCCeEeC----CCCceEEccccccccc
Q 039228          156 ILHCDPKPSNVLLD----NDLFAHIGDFELARFR  185 (356)
Q Consensus       156 iiH~Dlkp~NIll~----~~~~~kl~Dfg~a~~~  185 (356)
                      ++|+|=.|.||++.    .++.+.+.|||+...+
T Consensus       322 ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~i  355 (538)
T KOG1235|consen  322 FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVI  355 (538)
T ss_pred             CccCCCCCCcEEEecCCCCCccEEEEcccccccc
Confidence            99999999999998    4778999999998754

>PLN02236 choline kinase

Probab=95.64  E-value=0.06  Score=50.62  Aligned_cols=29  Identities=28%  Similarity=0.324  Sum_probs=25.4

Q ss_pred             cEEecCCCCCCeEeCC-CCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDN-DLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~  183 (356)
                      .++|+|+++.||++++ ++.+.|+||..+.
T Consensus       201 ~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~  230 (344)
T PLN02236        201 GFCHNDLQYGNIMIDEETRAITIIDYEYAS  230 (344)
T ss_pred             eEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence            3899999999999986 5789999999884

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=95.58  E-value=0.093  Score=50.17  Aligned_cols=50  Identities=20%  Similarity=0.054  Sum_probs=35.5

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeecc-----C--ccchHHHHHHHHHHhhc
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-----C--QGASKSFMAECKALKNI  126 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-----~--~~~~~~~~~E~~~l~~l  126 (356)
                      .+.||.|.++.||++....+++.|+||.-...     .  ....++...|...|..+
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l   87 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQ   87 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHH
Confidence            35789999999999998755468999984311     0  12345677788877765

>PRK05231 homoserine kinase; Provisional

Probab=95.54  E-value=0.063  Score=49.75  Aligned_cols=28  Identities=32%  Similarity=0.469  Sum_probs=24.9

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      +||+|+.|.||+++.+...-|+||+.+.
T Consensus       189 liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        189 VIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             cCCCCCCCCcEEEECCceEEEEeccccc
Confidence            9999999999999977666899999884

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.51  E-value=0.08  Score=48.85  Aligned_cols=29  Identities=38%  Similarity=0.509  Sum_probs=26.0

Q ss_pred             cEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      .++|+|+.+.||+++.++.+.|.||+.+.
T Consensus       188 ~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       188 GVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             ccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            39999999999999988877899999874

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=95.17  E-value=0.14  Score=44.14  Aligned_cols=96  Identities=23%  Similarity=0.269  Sum_probs=61.1

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccC----------------ccchHHHHHHHHHHhhcC------CCChHHH
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC----------------QGASKSFMAECKALKNIC------HRNLVRF  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~E~~~l~~l~------h~niv~l  134 (356)
                      ...||+|+.-.||.--..   ....||+.....                ....++..+|+.....+.      +.+|.++
T Consensus         6 ~~~i~~G~~R~cy~HP~d---p~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~   82 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHPDD---PNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRF   82 (199)
T ss_pred             CcccccCCCceEEECCCC---CCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccE
Confidence            457999999999975433   556789886543                223456677777666655      4455554


Q ss_pred             HH----------------------------HH------HHHHHH----HHHHhhcCCCcEEecCCCCCCeEeCC--CC--
Q 039228          135 IS----------------------------IA------IDVASA----LDYLHHHCQELILHCDPKPSNVLLDN--DL--  172 (356)
Q Consensus       135 ~~----------------------------i~------~~i~~a----L~~LH~~~~~~iiH~Dlkp~NIll~~--~~--  172 (356)
                      ++                            ++      ..+..+    ..||-..+   |+.+|++|.||++..  ++  
T Consensus        83 ~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~~~~~~L~~f~~~l~~~~---Iv~~dl~~~NIv~~~~~~~~~  159 (199)
T PF10707_consen   83 YGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTEELRQALDEFKRYLLDHH---IVIRDLNPHNIVVQRRDSGEF  159 (199)
T ss_pred             eEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccHHHHHHHHHHHHHHHHcC---CeecCCCcccEEEEecCCCce
Confidence            11                            11      123333    35777777   999999999999963  22  


Q ss_pred             ceEEcc
Q 039228          173 FAHIGD  178 (356)
Q Consensus       173 ~~kl~D  178 (356)
                      .+.|+|
T Consensus       160 ~lvlID  165 (199)
T PF10707_consen  160 RLVLID  165 (199)
T ss_pred             EEEEEe
Confidence            456665

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=95.17  E-value=0.006  Score=65.91  Aligned_cols=80  Identities=11%  Similarity=-0.017  Sum_probs=68.5

Q ss_pred             EEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcC
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR  235 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg  235 (356)
                      .+|+++|+-|.+|..+..++++++|+.++.    ++.....+...+++.|+.++....-.++.++|+|+.|+.+|+.-.|
T Consensus      1361 ~v~~~Lkf~lpmIVtny~v~~gk~gLdKIk----np~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~ 1436 (2724)
T KOG1826|consen 1361 NVSKSLKFTLPMIVTNYNVKLGKGGLDKIK----NPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDG 1436 (2724)
T ss_pred             chhhhhhhhccceecCCccccccccccccc----CchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcc
Confidence            689999999999999999999999999833    2334455667778889999999888888889999999999999888


Q ss_pred             CCCC
Q 039228          236 RKPI  239 (356)
Q Consensus       236 ~~Pf  239 (356)
                      ..+|
T Consensus      1437 n~~f 1440 (2724)
T KOG1826|consen 1437 NAYF 1440 (2724)
T ss_pred             cHHH
Confidence            8776

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=94.70  E-value=0.064  Score=46.70  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=33.3

Q ss_pred             HHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccc
Q 039228          142 ASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       142 ~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a  182 (356)
                      +.+|.-.|+.. ...+|+|..|+||+-|..|.+||.|-+..
T Consensus       151 i~~L~~fH~~~-~~~lHGD~np~NiM~D~~G~lKlVDP~~L  190 (308)
T PF07387_consen  151 IKDLMDFHSEN-QHCLHGDCNPDNIMCDKFGYLKLVDPVCL  190 (308)
T ss_pred             HHHHHHhhccC-CCeecCCCChhheeecCCCCEEecChhhh
Confidence            56788889542 34999999999999999999999997754

The function of this family is unknown.

>PRK12396 5-methylribose kinase; Reviewed

Probab=94.50  E-value=0.24  Score=47.18  Aligned_cols=50  Identities=18%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEee----c--cCccchHHHHHHHHHHhhc
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLS----I--QCQGASKSFMAECKALKNI  126 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~----~--~~~~~~~~~~~E~~~l~~l  126 (356)
                      ...||.|.-..||++.+..+++.|+||.-.    .  +..-..++..-|...|+.+
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~   89 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLE   89 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHH
Confidence            467899999999999985445679999742    1  1123345666677777765

>PLN02876 acyl-CoA dehydrogenase

Probab=94.09  E-value=0.33  Score=51.23  Aligned_cols=55  Identities=9%  Similarity=0.130  Sum_probs=37.3

Q ss_pred             cccceecCceEEEEEEECCCC--eEEEEEEeeccCc-cchHHHHHHHHHHhhcC-CCCh
Q 039228           77 INLIGVGSFDAVYQGVFDLNR--AVVAIKVLSIQCQ-GASKSFMAECKALKNIC-HRNL  131 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~--~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~ni  131 (356)
                      ...++.|.++.+|+.....++  ..+++|+...... .....+.+|+.+|+.+. |+++
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~v  101 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDV  101 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCC
Confidence            567899999999998775432  4677777643221 22346788999998885 5543

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=93.50  E-value=0.17  Score=43.25  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       130 niv~l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                      ....-.+|+.+++..+.+|++.-...+.-.|++++|+-++++|.+|+.|...+...
T Consensus        57 ~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   57 PWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            33444678999999999999854444888999999999999999999999877543

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=93.44  E-value=0.27  Score=46.20  Aligned_cols=104  Identities=20%  Similarity=0.250  Sum_probs=68.6

Q ss_pred             ccccceecCceEEEEEEECCCCeEEEEEEeecc---------------------Cccc----h-HHHHHHHHHHhhcCCC
Q 039228           76 LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---------------------CQGA----S-KSFMAECKALKNICHR  129 (356)
Q Consensus        76 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---------------------~~~~----~-~~~~~E~~~l~~l~h~  129 (356)
                      +-..|..|.-+.||.|.... |..+|||+++.+                     +...    . -....|++-|.+|+..
T Consensus       148 inGCiSTGKEANVYHat~~d-G~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  148 INGCISTGKEANVYHATEED-GSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             cccccccCccceeEeeecCC-CceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            44567788889999998764 577999998532                     0011    1 1234677778877533


Q ss_pred             ChH-------H-------H---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          130 NLV-------R-------F---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       130 niv-------~-------l---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                      .|.       +       +                     ..+..+++.-+.-|-+.+  .+||.||.--|+|+. +|.+
T Consensus       227 GIP~PePIlLk~hVLVM~FlGrdgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c--~LVHADLSEfN~Lyh-dG~l  303 (520)
T KOG2270|consen  227 GIPCPEPILLKNHVLVMEFLGRDGWAAPKLKDASLSTSKARELYQQCVRIMRRLYQKC--RLVHADLSEFNLLYH-DGKL  303 (520)
T ss_pred             CCCCCCceeeecceEeeeeccCCCCcCcccccccCChHHHHHHHHHHHHHHHHHHHHh--ceeccchhhhhheEE-CCEE
Confidence            221       1       0                     234455666666665544  399999999999987 5678


Q ss_pred             EEccccccc
Q 039228          175 HIGDFELAR  183 (356)
Q Consensus       175 kl~Dfg~a~  183 (356)
                      .|+|.+-+.
T Consensus       304 yiIDVSQSV  312 (520)
T KOG2270|consen  304 YIIDVSQSV  312 (520)
T ss_pred             EEEEccccc
Confidence            899988764

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=93.41  E-value=0.45  Score=44.80  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=32.7

Q ss_pred             cceecCceEEEEEEECCCCeEEEEEEee----c---cCccchHHHHHHHHHHhhc
Q 039228           79 LIGVGSFDAVYQGVFDLNRAVVAIKVLS----I---QCQGASKSFMAECKALKNI  126 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~~~~~vavK~~~----~---~~~~~~~~~~~E~~~l~~l  126 (356)
                      .||.|....||++....+++.|+||.-.    .   ...-...+..-|...|+..
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~   56 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQ   56 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHh
Confidence            5799999999999986544689999742    1   1123345556677777654

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=93.17  E-value=0.27  Score=46.02  Aligned_cols=47  Identities=28%  Similarity=0.335  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                      +.++.+.+.-++-+...  .+.-|||+.-.||||+ +|++.|+||.+++.
T Consensus       324 lsff~s~~sil~~lekk--f~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         324 LSFFWSCISILDILEKK--FPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             HHHHHHHHHHHhhhhhc--CCcccccccccceeee-cCceEEEEeeeeec
Confidence            55666666666655553  4588999999999999 99999999999983

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=92.99  E-value=0.55  Score=43.83  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=24.7

Q ss_pred             EEecCCCCCCeEeCC-CCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDN-DLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~  183 (356)
                      ++|.|+.+.||++++ ++.++++||..|.
T Consensus       184 ~CHnDl~~~NiL~~~~~~~l~lID~EYag  212 (330)
T PLN02421        184 FAHNDLLSGNLMLNEDEGKLYFIDFEYGS  212 (330)
T ss_pred             EEECCCCcccEEEeCCCCcEEEEcccccC
Confidence            689999999999974 5789999999884

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=92.68  E-value=0.1  Score=46.15  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             cEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      .++|+|+.+.||++++++..-|.||+.+.
T Consensus       165 ~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         165 VWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             eEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            38999999999999977666799999875

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=92.53  E-value=0.24  Score=45.45  Aligned_cols=30  Identities=33%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             CcEEecCCCCCCeEeCCC----CceEEccccccc
Q 039228          154 ELILHCDPKPSNVLLDND----LFAHIGDFELAR  183 (356)
Q Consensus       154 ~~iiH~Dlkp~NIll~~~----~~~kl~Dfg~a~  183 (356)
                      ..++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       179 ~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         179 VVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             ceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            348999999999999974    889999999884

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PRK10271 thiK thiamine kinase; Provisional

Probab=92.22  E-value=0.11  Score=44.23  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=24.7

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      .+|+|+.|.||++++++ ++|+||+.+.
T Consensus        79 p~H~D~~~~N~~~~~~~-~~lIDwe~a~  105 (188)
T PRK10271         79 PLHMDVHAGNLVHSASG-LRLIDWEYAG  105 (188)
T ss_pred             eecCCCCCccEEEECCC-EEEEeCCccc
Confidence            68999999999998877 8899999885

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=91.98  E-value=0.13  Score=45.63  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=26.1

Q ss_pred             cEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      .++|+|+.|.||++++++.+.|+||+.+.
T Consensus       164 ~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         164 VVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             EEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            48999999999999998778899999874

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PHA03111 Ser/Thr kinase; Provisional

Probab=91.74  E-value=0.19  Score=46.39  Aligned_cols=49  Identities=27%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHH-hhcCCCcEEecCCCCCCeEeCCCC------------------ceEEccccccccc
Q 039228          137 IAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDL------------------FAHIGDFELARFR  185 (356)
Q Consensus       137 i~~~i~~aL~~L-H~~~~~~iiH~Dlkp~NIll~~~~------------------~~kl~Dfg~a~~~  185 (356)
                      ++.||+.-.-.. ...+-...+|-||||+|||+-+..                  .++|.||.+++..
T Consensus       284 ifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~  351 (444)
T PHA03111        284 IFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQVA  351 (444)
T ss_pred             HHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHHHc
Confidence            555655433222 222223489999999999994332                  3456777777643

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=91.49  E-value=0.092  Score=41.21  Aligned_cols=30  Identities=20%  Similarity=0.107  Sum_probs=26.1

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeec
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSI  107 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~  107 (356)
                      ...||.|+.|.||+|+... |+.||||+.+.
T Consensus        16 ~~PlasASiaQVh~a~l~~-g~~VaVKV~rP   45 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKD-GEEVAVKVQRP   45 (119)
T ss_pred             cchhhheehhhheeeeecc-cchhhhhhcch
Confidence            3589999999999999876 69999999763

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=91.14  E-value=0.35  Score=44.44  Aligned_cols=28  Identities=25%  Similarity=0.222  Sum_probs=24.5

Q ss_pred             cEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      .++|+|+.+.||+++. +.+.|+||+.+.
T Consensus       188 ~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       188 GFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             ceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            3899999999999987 668899999764

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=90.65  E-value=0.17  Score=43.82  Aligned_cols=28  Identities=36%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             EEecCCCCCCeEe-CCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLL-DNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll-~~~~~~kl~Dfg~a~  183 (356)
                      ++|.|+.|.||++ +.++.++|+||..|.
T Consensus       145 ~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  145 FCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             EeeccCccccEEeccCCCeEEEecHHHHh
Confidence            7899999999999 889999999999885

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=90.23  E-value=0.44  Score=43.15  Aligned_cols=28  Identities=32%  Similarity=0.338  Sum_probs=26.4

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ++|+|+.|.|++.++.+.++|+||..|.
T Consensus       155 ~cH~Dl~~~N~l~t~~~~l~LIDWEyAg  182 (269)
T COG0510         155 PCHNDLNPGNLLLTDKGGLFLIDWEYAG  182 (269)
T ss_pred             eecCCCCccceEEcCCCcEEEEecccCC
Confidence            8999999999999999999999998875

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=89.84  E-value=0.83  Score=41.78  Aligned_cols=48  Identities=21%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC  127 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  127 (356)
                      +-.+.++-|....+|+..  .+++.+.||+-.   ......|..|..-|+.|.
T Consensus        20 ~~~~~v~GG~i~~a~~~~--~~~~~~FvK~~~---~~~~~~f~~Ea~gL~~L~   67 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLD--TDGGSYFVKVNS---ESGRDMFEGEAEGLKALA   67 (288)
T ss_dssp             -EEEEE--SSSSEEEEEE--TTS-EEEEEEEE---GGGCCHHHHHHHHHHHHC
T ss_pred             eeeEecCCCChhheEEEE--CCCccEEEEecC---hhhHHHHHHHHHHHHHHH
Confidence            345578889999999877  556889999865   233456777888777773

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=89.24  E-value=0.32  Score=44.20  Aligned_cols=30  Identities=27%  Similarity=0.517  Sum_probs=25.0

Q ss_pred             cEEecCCCCCCeEeCCCCc-eEEcccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLF-AHIGDFELARF  184 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~-~kl~Dfg~a~~  184 (356)
                      .++|+|+.|.||++++++. .-|.||+.+..
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~i  216 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAKV  216 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhccc
Confidence            3899999999999997554 46999998853

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=89.19  E-value=0.27  Score=45.68  Aligned_cols=32  Identities=28%  Similarity=0.571  Sum_probs=24.2

Q ss_pred             cEEecCCCCCCeEeCCC------------------CceEEcccccccccc
Q 039228          155 LILHCDPKPSNVLLDND------------------LFAHIGDFELARFRQ  186 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~------------------~~~kl~Dfg~a~~~~  186 (356)
                      ..+|-||||+|||+-+.                  -.++|.||.+++..+
T Consensus       299 nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~~  348 (434)
T PF05445_consen  299 NFLHVDLKPDNILIFDSKEPIRIKFGNRNYVFKEPIRCCLNDFDFSQVAN  348 (434)
T ss_pred             eeeecccCcCcEEEecCCCceEEEECCeEEEecccceeeecccCHHHhcc
Confidence            48999999999999432                  245788888887543

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=88.89  E-value=0.37  Score=41.35  Aligned_cols=28  Identities=25%  Similarity=0.330  Sum_probs=24.1

Q ss_pred             EEecCCCCCCeEeCCCC-----ceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDL-----FAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~-----~~kl~Dfg~a~  183 (356)
                      ++|||+.+.||++..++     .+.|.||..+.
T Consensus       122 l~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~  154 (196)
T smart00587      122 LNHGDLWANNIMFKYDDEGKPEDVALIDFQLSH  154 (196)
T ss_pred             EeeCCCCccceeeccCCCCCccceEEEecccCC
Confidence            89999999999997543     58899999885

subfamily of choline kinases

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=88.77  E-value=0.31  Score=47.62  Aligned_cols=78  Identities=10%  Similarity=0.007  Sum_probs=44.7

Q ss_pred             CccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC--chHHHhhhhhccccccccccccchhhhhchhhHHHH
Q 039228          218 TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN--RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLEC  295 (356)
Q Consensus       218 ~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (356)
                      +++||||+|.++.++.-|..-+.....  .+........+..  ....+.-..                     ...-++
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~--s~~l~~i~k~~~~d~~~~~~a~e~---------------------~~~~~~  166 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTE--SEYLEILLKYYTDDQELLSTAMEH---------------------LIQLLA  166 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHhccCchhHHHHHHHH---------------------HHHHhh
Confidence            599999999999999998776543211  1111111121211  111111100                     112256


Q ss_pred             HHHHHHHHHhhcCCCcCCCCChH
Q 039228          296 LIFMVRIGAACSMGSSQDRMNVP  318 (356)
Q Consensus       296 ~~~l~~l~~~Cl~~dP~~RPs~~  318 (356)
                      ...+..+...|+-..|..||...
T Consensus       167 d~~~~~~~~~c~~~~~~ir~l~~  189 (725)
T KOG1093|consen  167 DKKRLPLLKKCLWLEPIIRPLPM  189 (725)
T ss_pred             hHhHHHHhccCCccccccccchh
Confidence            66778899999999998877543

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=88.71  E-value=0.34  Score=45.15  Aligned_cols=28  Identities=43%  Similarity=0.583  Sum_probs=25.3

Q ss_pred             EEecCCCCCCeEeCCCCc-eEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLF-AHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~-~kl~Dfg~a~  183 (356)
                      +||+|+.|.||+++.+.. +.+.||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            899999999999998874 8899999875

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=86.70  E-value=0.39  Score=44.36  Aligned_cols=28  Identities=25%  Similarity=0.216  Sum_probs=26.3

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ++|+|+.+.|++++.++.+.++||..+.
T Consensus       198 lcHgD~~~~Nvl~~~~~~~~iIDfd~~~  225 (309)
T TIGR02904       198 LVHGKLSLSHFLYDETRGGYFINFEKAS  225 (309)
T ss_pred             eeCCCCcHHhEEEcCCCCEEEEEhhhcc
Confidence            9999999999999999899999999885

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>PTZ00296 choline kinase; Provisional

Probab=86.40  E-value=3.5  Score=40.15  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.2

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ++|.|+-+.|||.+.++ ++|+||..|.
T Consensus       286 fCHNDl~~~NiL~~~~~-l~LIDfEYAg  312 (442)
T PTZ00296        286 FCHNDLQENNIINTNKC-LRLIDFEYSG  312 (442)
T ss_pred             EEeCCCCccceeecCCC-EEEEeecccc
Confidence            78999999999887554 9999998774

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=86.13  E-value=1.1  Score=42.69  Aligned_cols=31  Identities=35%  Similarity=0.528  Sum_probs=23.9

Q ss_pred             ccceecCceEEEEEEEC---------------CCCeEEEEEEeecc
Q 039228           78 NLIGVGSFDAVYQGVFD---------------LNRAVVAIKVLSIQ  108 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~---------------~~~~~vavK~~~~~  108 (356)
                      ..||.|.-..||+|..+               .+.+.+|+|+.+..
T Consensus       195 ~PIGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~  240 (565)
T KOG1236|consen  195 EPIGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPN  240 (565)
T ss_pred             cccccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCcc
Confidence            36899999999998742               23578999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-18
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		5e-17
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		5e-10
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		6e-10
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-09
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-09
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-09
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		3e-09
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		4e-09
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		4e-09
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		6e-09
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		7e-09
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		8e-09
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		8e-09
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		9e-09
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		9e-09
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		9e-09
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		9e-09
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		9e-09
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		9e-09
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		1e-08
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-08
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		1e-08
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		1e-08
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-08
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-08
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-08
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-08
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		2e-08
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-08
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-08
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-08
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		2e-08
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		2e-08
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		2e-08
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-08
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		2e-08
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-08
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-08
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		2e-08
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		2e-08
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		2e-08
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-08
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		2e-08
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		2e-08
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		2e-08
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		2e-08
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		2e-08
2pl0_A	289	Lck Bound To Imatinib Length = 289		3e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		3e-08
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		3e-08
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-08
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-08
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-08
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		4e-08
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		4e-08
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		4e-08
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-08
4h58_A	275	Braf In Complex With Compound 3 Length = 275		4e-08
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		4e-08
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		4e-08
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		4e-08
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		4e-08
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		4e-08
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		4e-08
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		5e-08
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		5e-08
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		5e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		5e-08
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-08
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		6e-08
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		6e-08
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		7e-08
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		7e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		7e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		8e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		8e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		8e-08
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		8e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		8e-08
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		8e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		8e-08
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		9e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-07
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-07
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		1e-07
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-07
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		1e-07
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-07
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		1e-07
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		1e-07
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-07
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-07
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		2e-07
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-07
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-07
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-07
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-07
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-07
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-07
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-07
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-07
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-07
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-07
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-07
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-07
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-07
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		3e-07
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-07
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		3e-07
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-07
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		4e-07
3a4o_X	286	Lyn Kinase Domain Length = 286		4e-07
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		5e-07
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		6e-07
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-07
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		6e-07
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		6e-07
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		6e-07
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		6e-07
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		6e-07
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		6e-07
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		6e-07
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		7e-07
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		7e-07
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-07
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		7e-07
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		7e-07
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		7e-07
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		8e-07
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		8e-07
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		8e-07
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		8e-07
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		9e-07
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		9e-07
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		9e-07
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		9e-07
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		9e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-06
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-06
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-06
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-06
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-06
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-06
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-06
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		2e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		3e-06
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		3e-06
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		3e-06
1fvr_A	327	Tie2 Kinase Domain Length = 327		4e-06
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		4e-06
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		4e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		5e-06
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		5e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		5e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		5e-06
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		6e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		7e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		9e-06
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		9e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-05
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-05
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-05
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		1e-05
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		1e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-05
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		2e-05
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		2e-05
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		2e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		2e-05
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		2e-05
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		2e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		2e-05
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		2e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-05
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		2e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-05
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		2e-05
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-05
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		2e-05
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		2e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		2e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		2e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-05
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		2e-05
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		3e-05
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-05
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		3e-05
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		3e-05
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		3e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		4e-05
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		4e-05
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		4e-05
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		4e-05
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		4e-05
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		4e-05
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-05
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		4e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		5e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		5e-05
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		5e-05
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		5e-05
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		5e-05
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		5e-05
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		5e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		6e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		6e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		6e-05
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		7e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		8e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		9e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		1e-04
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		1e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		1e-04
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		1e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		1e-04
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		1e-04
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-04
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		2e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		2e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		2e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		2e-04
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		2e-04
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		2e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		2e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		2e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		2e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		2e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		2e-04
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		2e-04
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		3e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		3e-04
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		3e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		3e-04
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		3e-04
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		3e-04
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-04
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		3e-04
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-04
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		3e-04
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-04
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		3e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		3e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		3e-04
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		3e-04
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-04
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		4e-04
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		4e-04
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		5e-04
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		6e-04
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		6e-04
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		8e-04
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		8e-04
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		8e-04
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		8e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		8e-04
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 91/214 (42%), Gaps = 46/214 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICH 128
           A+D F   N++G G F  VY+G    +  +VA+K L  +  QG    F  E + +    H
Sbjct: 36  ASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERXQGGELQFQTEVEMISMAVH 94
Query: 129 RNLVRFIS-----------------------------------------IAIDVASALDY 147
           RNL+R                                            IA+  A  L Y
Sbjct: 95  RNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAY 154
Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
           LH HC   I+H D K +N+LLD +  A +GDF LA+    +          VR TIG+ A
Sbjct: 155 LHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL---MDYKDXHVXXAVRGTIGHIA 211
Query: 208 LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF 241
            +Y    + S   D + YG++LLE++T ++  D 
Sbjct: 212 PEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDL 245

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 46/214 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICH 128
           A+D F   N++G G F  VY+G    +  +VA+K L  +  QG    F  E + +    H
Sbjct: 28  ASDNFXNKNILGRGGFGKVYKGRL-ADGXLVAVKRLKEERTQGGELQFQTEVEMISMAVH 86
Query: 129 RNLVRFIS-----------------------------------------IAIDVASALDY 147
           RNL+R                                            IA+  A  L Y
Sbjct: 87  RNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAY 146
Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
           LH HC   I+H D K +N+LLD +  A +GDF LA+    +          VR  IG+ A
Sbjct: 147 LHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL---MDYKDXHVXXAVRGXIGHIA 203
Query: 208 LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF 241
            +Y    + S   D + YG++LLE++T ++  D 
Sbjct: 204 PEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDL 237

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 46/198 (23%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF- 134
           LI  +G G F  V+ G ++ N  V AIK L      + +SF+ E + +K + H  LV+  
Sbjct: 13  LIKRLGNGQFGEVWMGTWNGNTKV-AIKTLKPGTM-SPESFLEEAQIMKKLKHDKLVQLY 70
Query: 135 -------------------------------------ISIAIDVASALDYLHHHCQELIL 157
                                                + +A  VA+ + Y+        +
Sbjct: 71  AVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN---YI 127
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D + +N+L+ N L   I DF LAR    + +   ++  G +  I +TA +  L    +
Sbjct: 128 HRDLRSANILVGNGLICKIADFGLARL---IEDNEXTARQGAKFPIKWTAPEAALYGRFT 184
Query: 218 TNGDAYNYGILLLEMVTR 235
              D +++GILL E+VT+
Sbjct: 185 IKSDVWSFGILLTELVTK 202

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 60/211 (28%)
Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLS----IQCQGASKSFMAECKALKNICHRNLVR 133
           N +G G F  VY+G   +N   VA+K L+    I  +   + F  E K +    H NLV 
Sbjct: 37  NKMGEGGFGVVYKGY--VNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 94
Query: 134 FIS----------------------------------------IAIDVASALDYLH--HH 151
            +                                         IA   A+ +++LH  HH
Sbjct: 95  LLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH 154
Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL--D 209
                +H D K +N+LLD    A I DF LAR  ++ +     S     R +G TA    
Sbjct: 155 -----IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXS-----RIVGTTAYMAP 204
Query: 210 YDLGSEVSTNGDAYNYGILLLEMVTRRKPID 240
             L  E++   D Y++G++LLE++T    +D
Sbjct: 205 EALRGEITPKSDIYSFGVVLLEIITGLPAVD 235

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 60/211 (28%)
Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLS----IQCQGASKSFMAECKALKNICHRNLVR 133
           N +G G F  VY+G   +N   VA+K L+    I  +   + F  E K +    H NLV 
Sbjct: 37  NKMGEGGFGVVYKGY--VNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 94
Query: 134 FIS----------------------------------------IAIDVASALDYLH--HH 151
            +                                         IA   A+ +++LH  HH
Sbjct: 95  LLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH 154
Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL--D 209
                +H D K +N+LLD    A I DF LAR  ++ +           R +G TA    
Sbjct: 155 -----IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXX-----RIVGTTAYMAP 204
Query: 210 YDLGSEVSTNGDAYNYGILLLEMVTRRKPID 240
             L  E++   D Y++G++LLE++T    +D
Sbjct: 205 EALRGEITPKSDIYSFGVVLLEIITGLPAVD 235

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 46/226 (20%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKN 125
           L + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 126 ICHRNLVRFISI--------------AIDV-----ASAL---------DYLHHHCQEL-- 155
           + H N+V+ + +              ++D+     ASAL          YL    Q L  
Sbjct: 62  LNHPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 121
Query: 156 -----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A + 
Sbjct: 122 CHSHRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEI 177
Query: 211 DLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 LLGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 219

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 46/226 (20%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKN 125
           L + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK 
Sbjct: 1   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 126 ICHRNLVRFISI--------------AIDV-----ASAL---------DYLHHHCQEL-- 155
           + H N+V+ + +              ++D+     ASAL          YL    Q L  
Sbjct: 61  LNHPNIVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAF 120
Query: 156 -----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A + 
Sbjct: 121 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEI 176
Query: 211 DLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 LLGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 218

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 46/226 (20%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKN 125
           L + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 126 ICHRNLVRFISI--------------AIDV-----ASAL---------DYLHHHCQEL-- 155
           + H N+V+ + +              ++D+     ASAL          YL    Q L  
Sbjct: 62  LNHPNIVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAF 121
Query: 156 -----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A + 
Sbjct: 122 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEI 177
Query: 211 DLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 LLGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 219

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 60/211 (28%)
Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLS----IQCQGASKSFMAECKALKNICHRNLVR 133
           N +G G F  VY+G   +N   VA+K L+    I  +   + F  E K +    H NLV 
Sbjct: 31  NKMGEGGFGVVYKGY--VNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVE 88
Query: 134 FIS----------------------------------------IAIDVASALDYLH--HH 151
            +                                         IA   A+ +++LH  HH
Sbjct: 89  LLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHH 148
Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL--D 209
                +H D K +N+LLD    A I DF LAR  ++ +           R +G TA    
Sbjct: 149 -----IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXX-----RIVGTTAYMAP 198
Query: 210 YDLGSEVSTNGDAYNYGILLLEMVTRRKPID 240
             L  E++   D Y++G++LLE++T    +D
Sbjct: 199 EALRGEITPKSDIYSFGVVLLEIITGLPAVD 229

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 83/211 (39%), Gaps = 60/211 (28%)
Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLS----IQCQGASKSFMAECKALKNICHRNLVR 133
           N  G G F  VY+G   +N   VA+K L+    I  +   + F  E K      H NLV 
Sbjct: 28  NKXGEGGFGVVYKGY--VNNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVE 85
Query: 134 FIS----------------------------------------IAIDVASALDYLH--HH 151
            +                                         IA   A+ +++LH  HH
Sbjct: 86  LLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHENHH 145
Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
                +H D K +N+LLD    A I DF LAR  ++ +     S     R +G TA    
Sbjct: 146 -----IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXS-----RIVGTTAYXAP 195
Query: 212 --LGSEVSTNGDAYNYGILLLEMVTRRKPID 240
             L  E++   D Y++G++LLE++T    +D
Sbjct: 196 EALRGEITPKSDIYSFGVVLLEIITGLPAVD 226

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 46/224 (20%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 128 HRNLVRFISI--------------AIDV-----ASAL---------DYLHHHCQEL---- 155
           H N+V+ + +              ++D+     ASAL          YL    Q L    
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 121
Query: 156 ---ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  L
Sbjct: 122 SHRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEILL 177
Query: 213 GSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           G +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 GCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 217

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 63  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 121
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 177
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 XKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 10  ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 70  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 128
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 129 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 184
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 185 XKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 223

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 48/227 (21%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKN 125
           L + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 126 ICHRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL- 155
           + H N+V+ + +                     +D ASAL          YL    Q L 
Sbjct: 62  LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLA 120
Query: 156 ------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
                 +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +
Sbjct: 121 FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPE 176
Query: 210 YDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
             LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 ILLGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 219

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 48/227 (21%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKN 125
           L + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK 
Sbjct: 3   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 62
Query: 126 ICHRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL- 155
           + H N+V+ + +                     +D ASAL          YL    Q L 
Sbjct: 63  LNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLA 121
Query: 156 ------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
                 +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +
Sbjct: 122 FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPE 177
Query: 210 YDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
             LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 ILLGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 220

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEIL 176
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 217

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 10  ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 70  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 128
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 129 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 184
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 185 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 223

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 63  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLSFCHS 121
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 177
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 63  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 121
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 177
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 63  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 121
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 177
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 176
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 215

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 176
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 215

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 95/222 (42%), Gaps = 46/222 (20%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 130 NLVRFISIA--------------IDVASALD--------------YLHHHCQEL------ 155
           N+V+ + +                D+ + +D              YL    Q L      
Sbjct: 62  NIVKLLDVIHTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH 121
Query: 156 -ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG 
Sbjct: 122 RVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLGC 177
Query: 215 E-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 KYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 215

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 7   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 67  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 125
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 126 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 181
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 182 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 220

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 46/224 (20%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 128 HRNLVRFISIA------------IDV-------ASAL---------DYLHHHCQEL---- 155
           H N+V+ + +             +D        ASAL          YL    Q L    
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 123
Query: 156 ---ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  L
Sbjct: 124 SHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEILL 179
Query: 213 GSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           G +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 180 GCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 219

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 63  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 177
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 218

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 63  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 177
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 218

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 63  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 122 HSHRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 177
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 218

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 176
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 217

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 175
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 176 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 76/197 (38%), Gaps = 42/197 (21%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           IG GSF  VY+G +  + AV  +KV+    +   ++F  E   L+   H N++ F     
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKILKVVDPTPE-QFQAFRNEVAVLRKTRHVNILLFMGYMT 102
Query: 135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPK 162
                                           I IA   A  +DYLH    + I+H D K
Sbjct: 103 KDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMK 159
Query: 163 PSNVLLDNDLFAHIGDFELARFRQEVSNPTQ-SSSNGVRRTIGYTALDYDLGSEVSTNGD 221
            +N+ L   L   IGDF LA  +   S   Q     G    +    +     +  S   D
Sbjct: 160 SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSD 219
Query: 222 AYNYGILLLEMVTRRKP 238
            Y+YGI+L E++T   P
Sbjct: 220 VYSYGIVLYELMTGELP 236

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 175
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 176 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 62  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 121 HSHRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 176
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 217

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 7   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 64
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 65  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 124
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 125 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEXTAREGAKFPIK 181
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 182 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 239

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 175
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 176 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFLHQDLKDFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 120 HSHRVLHRDLKPENLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 175
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 176 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 178
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 179 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 219

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 48/225 (21%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 128 HRNLVRFISIA--------------------IDVASAL---------DYLHHHCQEL--- 155
           H N+V+ + +                     +D ASAL          YL    Q L   
Sbjct: 61  HPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEIL 175
Query: 212 LGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 176 LGCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  LG
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEILLG 176
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 215

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  LG
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEILLG 176
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 215

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 46/224 (20%)
Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNIC 127
           + + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + 
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 128 HRNLVRFISIA--------------IDVASALD--------------YLHHHCQEL---- 155
           H N+V+ + +                D+ + +D              YL    Q L    
Sbjct: 64  HPNIVKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCH 123
Query: 156 ---ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  L
Sbjct: 124 SHRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEILL 179
Query: 213 GSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           G +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 180 GCKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 219

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 9   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 66
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 67  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 126
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 127 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEXTAREGAKFPIK 183
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 184 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 241

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 10  KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 67
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 68  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 127
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 128 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEXTAREGAKFPIK 184
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 185 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 242

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K   L  + +G   + + E   LK + H 
Sbjct: 4   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 64  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 122
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++  + V  T+ Y A +  LG
Sbjct: 123 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYXHEV-VTLWYRAPEILLG 178
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 179 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 217

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 1   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 58
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 59  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 118
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 119 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEXTAREGAKFPIK 175
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 233

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 7   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 64
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 65  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 124
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 125 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIK 181
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 182 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 239

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 3   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 60
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 61  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 120
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 121 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEXTAREGAKFPIK 177
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 178 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 235

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 2   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 59
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 60  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 119
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 120 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEXTAREGAKFPIK 176
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 177 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 234

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 6   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 63
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 64  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 123
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 124 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIK 180
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 181 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 238

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 11  KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 68
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 69  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 128
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 129 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIK 185
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 186 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 243

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 23  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 80
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     ++  S LD+L     + +                        +H D + +
Sbjct: 81  EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAA 140
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 141 NILVGENLVCKVADFGLARL---IEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 197
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 198 FGILLTELTTK 208

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 1   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 58
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 59  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 118
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 119 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEXTAREGAKFPIK 175
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 233

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 43  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 99
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 100 STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 156
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 157 LKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 216
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 217 SDVYAFGIVLYELMTGQLP 235

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 44  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 100
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 101 STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 157
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 158 LKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 217
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 218 SDVYAFGIVLYELMTGQLP 236

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 21  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 77
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 78  STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 134
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 135 LKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 194
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 195 SDVYAFGIVLYELMTGQLP 213

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 1   KPWWEDEWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 58
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 59  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 118
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 119 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIK 175
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 233

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 21  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 77
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 78  STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 134
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 135 LKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 194
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 195 SDVYAFGIVLYELMTGQLP 213

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +  +   VA+K+L++      +  +F  E   L+   H N       
Sbjct: 18  IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 74
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 75  STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 131
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 132 LKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 191
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 192 SDVYAFGIVLYELMTGQLP 210

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 43/233 (18%)
Query: 63  YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV-LSIQCQGASKSFMAECK 121
           Y++ L++    +  +  +G G++  VY+      R V   ++ L  + +G   + + E  
Sbjct: 15  YFQGLMEK---YQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREIS 71
Query: 122 ALKNICHRNLVRFISI--------------AIDVASALD-------------YLHH---- 150
            LK + H N+V  I +                D+   LD             YL+     
Sbjct: 72  LLKELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRG 131
Query: 151 --HC-QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
             HC Q  ILH D KP N+L+++D    + DF LAR       P +S ++ V  T+ Y A
Sbjct: 132 VAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR---AFGIPVRSYTHEV-VTLWYRA 187
Query: 208 LDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN 259
            D  +GS + ST+ D ++ G +  EM+T +     + + D     F+ +  PN
Sbjct: 188 PDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPN 240

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 16  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 73  STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 129
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 130 LKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 189
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 190 SDVYAFGIVLYELMTGQLP 208

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 43/233 (18%)
Query: 63  YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV-LSIQCQGASKSFMAECK 121
           Y++ L++    +  +  +G G++  VY+      R V   ++ L  + +G   + + E  
Sbjct: 15  YFQGLMEK---YQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREIS 71
Query: 122 ALKNICHRNLVRFISI--------------AIDVASALD-------------YLHH---- 150
            LK + H N+V  I +                D+   LD             YL+     
Sbjct: 72  LLKELHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRG 131
Query: 151 --HC-QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
             HC Q  ILH D KP N+L+++D    + DF LAR       P +S ++ V  T+ Y A
Sbjct: 132 VAHCHQHRILHRDLKPQNLLINSDGALKLADFGLAR---AFGIPVRSYTHEV-VTLWYRA 187
Query: 208 LDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN 259
            D  +GS + ST+ D ++ G +  EM+T +     + + D     F+ +  PN
Sbjct: 188 PDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPN 240

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K I H  LV+  ++  
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKIRHEKLVQLYAVVS 83
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 84  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 144 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 200
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 201 FGILLTELTTK 211

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 43/222 (19%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE   +K + H+ LVR  
Sbjct: 12  LVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY 69
Query: 136 SIA-----------IDVASALDYLHHHC------------------------QELILHCD 160
           ++            ++  S +D+L                            +   +H D
Sbjct: 70  AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 129
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
            + +N+L+ + L   I DF LAR    + +   ++  G +  I +TA +       +   
Sbjct: 130 LRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 186
Query: 221 DAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 187 DVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 228

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAI-KV-LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+ K+ L  + +G   + + E   LK + H 
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 63  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 121
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 177
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 178 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 216

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 48/223 (21%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAI-KV-LSIQCQGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+ K+ L  + +G   + + E   LK + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 130 NLVRFISIA--------------------IDVASAL---------DYLHHHCQEL----- 155
           N+V+ + +                     +D ASAL          YL    Q L     
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMD-ASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++ +    + DF LAR       P ++ ++ V  T+ Y A +  LG
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLAR---AFGVPVRTYTHEV-VTLWYRAPEILLG 176
Query: 214 SE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +  ST  D ++ G +  EMVTRR     +F GD  +    R+
Sbjct: 177 CKYYSTAVDIWSLGCIFAEMVTRRA----LFPGDSEIDQLFRI 215

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 16  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 73  STAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 129
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 130 LKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 189
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 190 SDVYAFGIVLYELMTGQLP 208

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 23  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 80
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     ++  S LD+L     + +                        +H D + +
Sbjct: 81  EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAA 140
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 141 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 197
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 198 FGILLTELTTK 208

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 16  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 73
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 74  EEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 133
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 134 NILVGENLVCKVADFGLARL---IEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 190
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 191 FGILLTELTTK 201

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 36  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 92
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 93  STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 149
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 150 LKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 209
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 210 SDVYAFGIVLYELMTGQLP 228

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 44  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 100
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 101 STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 157
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 158 LKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 217
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 218 SDVYAFGIVLYELMTGQLP 236

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+      
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 135 ---ISIAIDV---ASALDYLHHHCQELI------------------------LHCDPKPS 164
              I I I+     S LD+L     + +                        +H D + +
Sbjct: 84  EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 144 NILVGENLVCKVADFGLARL---IEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 200
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 201 FGILLTELTTK 211

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G F  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 78  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 134
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 135 LAARNCLVGENHLVKVADFGLSRL---MTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKS 191
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 192 DVWAFGVLLWEIAT 205

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE-V 188
            +++ + +   +AS + YL        +H D    N+L++++L   + DF L+RF +E  
Sbjct: 116 TVIQLVGMLRGIASGMRYLAEMS---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEENS 172
Query: 189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
           S+PT++SS G +  I +TA +     + ++  DA++YGI++ E+++
Sbjct: 173 SDPTETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMS 218

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 45/229 (19%)
Query: 53  LTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQ 108
           LT     P +    +LK T+    + ++G G+F  VY+G++    +  +  VAIK+L+ +
Sbjct: 20  LTPSGTAPNQAQLRILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILN-E 77
Query: 109 CQG--ASKSFMAECKALKNICHRNLVRFISIAIDV-----------ASALDYLHHH---- 151
             G  A+  FM E   + ++ H +LVR + + +                L+Y+H H    
Sbjct: 78  TTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNI 137
Query: 152 --------CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
                   C ++           ++H D    NVL+ +     I DF LAR  +   +  
Sbjct: 138 GSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLE--GDEK 195
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           + +++G +  I + AL+     + +   D ++YG+ + E++T   KP D
Sbjct: 196 EYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 244

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRN------- 130
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N       
Sbjct: 16  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 131 ------------------------------LVRFISIAIDVASALDYLHHHCQELILHCD 160
                                         +++ I IA   A  +DYLH      I+H D
Sbjct: 73  STKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRD 129
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  DL   IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 130 LKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQ 189
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 190 SDVYAFGIVLYELMTGQLP 208

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 19  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 76
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 77  EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 136
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 137 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 193
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 194 FGILLTELTTK 204

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 41/199 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 275 LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 332
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 333 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 392
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 393 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 449
Query: 225 YGILLLEMVTR-RKPIDFM 242
           +GILL E+ T+ R P   M
Sbjct: 450 FGILLTELTTKGRVPYPGM 468

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 192 LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 310 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 366
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 367 FGILLTELTTK 377

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 192 LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 310 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 366
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 367 FGILLTELTTK 377

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+      
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 135 ---ISIAIDV---ASALDYLHHHCQELI------------------------LHCDPKPS 164
              I I I+     S LD+L     + +                        +H D + +
Sbjct: 84  EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 144 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 200
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 201 FGILLTELTTK 211

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 17  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 74
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 75  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 134
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 135 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 191
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 192 FGILLTELTTK 202

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 192 LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 250 EEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 309
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 310 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 366
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 367 FGILLTELTTK 377

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 84  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 144 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 200
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 201 FGILLTELTTK 211

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 15  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 72
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 73  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 132
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 133 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 189
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 190 FGILLTELTTK 200

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 44/238 (18%)
Query: 61  KEYYESLLKAT-DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE 119
           K ++E   +   +   L+  +G G    V+ G ++     VA+K L  Q   +  +F+AE
Sbjct: 1   KPWWEDAWEVPRETLKLVERLGAGQAGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAE 58
Query: 120 CKALKNICHRNLVRFISIA-----------IDVASALDYLHHHC---------------- 152
              +K + H+ LVR  ++            ++  S +D+L                    
Sbjct: 59  ANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI 118
Query: 153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
                   +   +H D + +N+L+ + L   I DF LAR    + +   ++  G +  I 
Sbjct: 119 AEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARL---IEDAEXTAREGAKFPIK 175
Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           +TA +       +   D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 176 WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 233

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 84  EEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 144 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 200
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 201 FGILLTELTTK 211

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIAI 139
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 140 D--VASALDYLHHHC---------------QELI------------------LHCDPKPS 164
           +  +   ++Y+   C                +L+                  +H D + +
Sbjct: 84  EEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 143
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 144 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 200
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 201 FGILLTELTTK 211

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNI-------- 126
           +IG G F  VY G +     NR   AIK LS I      ++F+ E   ++ +        
Sbjct: 28  VIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLAL 87
Query: 127 ------------------CHRNLVRFI-------------SIAIDVASALDYLHHHCQEL 155
                             CH +L++FI             S  + VA  ++YL    ++ 
Sbjct: 88  IGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYL---AEQK 144
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +       R  + +TAL+      
Sbjct: 145 FVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYR 204
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 205 FTTKSDVWSFGVLLWELLTRGAP 227

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 81  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 137
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 138 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKS 194
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 195 DVWAFGVLLWEIAT 208

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 81  REPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 137
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 138 LAARNCLVGENHLVKVADFGLSRL---MTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKS 194
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 195 DVWAFGVLLWEIAT 208

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 138
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKS 195
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 196 DVWAFGVLLWEIAT 209

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE-V 188
            +++ + +   +AS + YL        +H D    N+L++++L   + DF L+RF +E  
Sbjct: 114 TVIQLVGMLRGIASGMRYLAEMS---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEENS 170
Query: 189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
           S+PT +SS G +  I +TA +     + ++  DA++YGI++ E+++
Sbjct: 171 SDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMS 216

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 141
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRL---MTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKS 198
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 199 DVWAFGVLLWEIAT 212

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 34  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 92
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 93  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 149
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 150 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 206
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 207 DVWAFGVLLWEIAT 220

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 141
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 198
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 199 DVWAFGVLLWEIAT 212

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 43/222 (19%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE   +K + H+ LVR  
Sbjct: 13  LVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY 70
Query: 136 SIA-----------IDVASALDYLHHHC------------------------QELILHCD 160
           ++            ++  S +D+L                            +   +H +
Sbjct: 71  AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRN 130
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
            + +N+L+ + L   I DF LAR    + +   ++  G +  I +TA +       +   
Sbjct: 131 LRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKS 187
Query: 221 DAYNYGILLLEMVTR-RKPIDFMFEGDL--NLHNFARMAFPN 259
           D +++GILL E+VT  R P   M   ++  NL    RM  P+
Sbjct: 188 DVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPD 229

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 138
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 195
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 196 DVWAFGVLLWEIAT 209

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 141
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 198
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 199 DVWAFGVLLWEIAT 212

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 78  REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 134
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 135 LAARNCLVGENHLVKVADFGLSRL---MTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKS 191
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 192 DVWAFGVLLWEIAT 205

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 83
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 84  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 140
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 141 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 197
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 198 DVWAFGVLLWEIAT 211

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 136
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 193
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 194 DVWAFGVLLWEIAT 207

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 85  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 141
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 198
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 199 DVWAFGVLLWEIAT 212

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+      
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDP 161
                                            + +A  +AS + Y+        +H D 
Sbjct: 84  EEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDL 140
Query: 162 KPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGD 221
           + +N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D
Sbjct: 141 RAANILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSD 197
Query: 222 AYNYGILLLEMVTR 235
            +++GILL E+ T+
Sbjct: 198 VWSFGILLTELTTK 211

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 82  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 138
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 139 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 195
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 196 DVWAFGVLLWEIAT 209

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 85  REPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 141
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 142 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 198
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 199 DVWAFGVLLWEIAT 212

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 26  LGQGCFGEVWMGTWN-GTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D   +
Sbjct: 84  EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLAAA 143
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 144 NILVGENLVCKVADFGLARL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 200
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 201 FGILLTELTTK 211

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 80  REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 136
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 193
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 194 DVWAFGVLLWEIAT 207

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 136
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 193
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 194 DVWAFGVLLWEIAT 207

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRD 136
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 193
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 194 DVWAFGVLLWEIAT 207

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 80  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 136
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 193
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 194 DVWAFGVLLWEIAT 207

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 80  REPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 136
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 137 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 193
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 194 DVWAFGVLLWEIAT 207

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQG--AS 113
           P +    +LK T+    + ++G G+F  VY+G++    +  +  VAIK+L+ +  G  A+
Sbjct: 4   PNQAQLRILKETE-LKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILN-ETTGPKAN 61
Query: 114 KSFMAECKALKNICHRNLVRFISIAIDV-----------ASALDYLHHH----------- 151
             FM E   + ++ H +LVR + + +                L+Y+H H           
Sbjct: 62  VEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLN 121
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+ +     I DF LAR  +   +  + +++G 
Sbjct: 122 WCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLE--GDEKEYNADGG 179
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+     + +   D ++YG+ + E++T   KP D
Sbjct: 180 KMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 221

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 78  REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRD 134
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 135 LAARNCLVGENHLVKVADFGLSRL---MTGDTFTAHAGAKFPIKWTAPESLAYNKFSIKS 191
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 192 DVWAFGVLLWEIAT 205

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRNLVRF--- 134
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N++ F   
Sbjct: 20  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 76
Query: 135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCD 160
                                             I IA   A  +DYLH      I+H D
Sbjct: 77  STKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKS---IIHRD 133
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  D    IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 134 LKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQ 193
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 194 SDVYAFGIVLYELMTGQLP 212

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 60/234 (25%)
Query: 63  YYESLLKATD-GFPLINL-----IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK-- 114
           Y++  +   D   P  +L     IG GSF  V++   + + + VA+K+L  Q   A +  
Sbjct: 22  YFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRA--EWHGSDVAVKILMEQDFHAERVN 79
Query: 115 SFMAECKALKNICHRNLVRF---------------------------------------- 134
            F+ E   +K + H N+V F                                        
Sbjct: 80  EFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRR 139
Query: 135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
           +S+A DVA  ++YLH+     I+H + K  N+L+D      + DF L+R +      T  
Sbjct: 140 LSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS----TFL 194
Query: 195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN 248
           SS     T  + A +       +   D Y++G++L E+ T ++P      G+LN
Sbjct: 195 SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPW-----GNLN 243

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + YL     + 
Sbjct: 96  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASKK 152
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 153 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMALESLQTQK 212
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 213 FTTKSDVWSFGVLLWELMTRGAP 235

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 41/198 (20%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  +G G F  V+ G ++ N   VA+K L        ++F+ E   +K + H  LVR  
Sbjct: 17  LVKRLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSV-QAFLEEANLMKTLQHDKLVRLY 74
Query: 136 SIA------------IDVASALDYLHHH------CQELI------------------LHC 159
           ++             +   S LD+L           +LI                  +H 
Sbjct: 75  AVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHR 134
Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN 219
           D + +NVL+   L   I DF LAR    + +   ++  G +  I +TA +       +  
Sbjct: 135 DLRAANVLVSESLMCKIADFGLARV---IEDNEYTAREGAKFPIKWTAPEAINFGCFTIK 191
Query: 220 GDAYNYGILLLEMVTRRK 237
            D +++GILL E+VT  K
Sbjct: 192 SDVWSFGILLYEIVTYGK 209

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 88/226 (38%), Gaps = 51/226 (22%)
Query: 59  IPKEYYE----SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK 114
           +P E Y      L +AT+ F    LIG G F  VY+GV   + A VA+K  + +     +
Sbjct: 22  VPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIE 80
Query: 115 SFMAECKALKNICHRNLVRFIS-------------------------------------- 136
            F  E + L    H +LV  I                                       
Sbjct: 81  EFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQ 140
Query: 137 ---IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ 193
              I I  A  L YLH      I+H D K  N+LLD +    I DF +++   E+     
Sbjct: 141 RLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHL 197
Query: 194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
                V+ T+GY   +Y +   ++   D Y++G++L E++  R  I
Sbjct: 198 XXV--VKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI 241

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 40/191 (20%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA- 138
           +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  ++  
Sbjct: 193 LGQGCFGEVWMGTWN-GTTRVAIKTLK-PGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 250
Query: 139 ----------IDVASALDYLHHHCQELI------------------------LHCDPKPS 164
                     +   S LD+L     + +                        +H D + +
Sbjct: 251 EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAA 310
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           N+L+  +L   + DF L R    + +   ++  G +  I +TA +  L    +   D ++
Sbjct: 311 NILVGENLVCKVADFGLGRL---IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 367
Query: 225 YGILLLEMVTR 235
           +GILL E+ T+
Sbjct: 368 FGILLTELTTK 378

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 76/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRNLVRF--- 134
           IG GSF  VY+G +      VA+K+L++      +  +F  E   L+   H N++ F   
Sbjct: 32  IGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88
Query: 135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCD 160
                                             I IA   A  +DYLH      I+H D
Sbjct: 89  STKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKS---IIHRD 145
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  D    IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 146 LKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQ 205
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 206 SDVYAFGIVLYELMTGQLP 224

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 60/234 (25%)
Query: 63  YYESLLKATD-GFPLINL-----IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK-- 114
           Y++  +   D   P  +L     IG GSF  V++   + + + VA+K+L  Q   A +  
Sbjct: 22  YFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRA--EWHGSDVAVKILMEQDFHAERVN 79
Query: 115 SFMAECKALKNICHRNLVRF---------------------------------------- 134
            F+ E   +K + H N+V F                                        
Sbjct: 80  EFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRR 139
Query: 135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
           +S+A DVA  ++YLH+     I+H D K  N+L+D      + DF L+R +      ++ 
Sbjct: 140 LSMAYDVAKGMNYLHNR-NPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKX 198
Query: 195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN 248
           ++ G    +    L  +  +E S   D Y++G++L E+ T ++P      G+LN
Sbjct: 199 AA-GTPEWMAPEVLRDEPSNEKS---DVYSFGVILWELATLQQPW-----GNLN 243

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 325
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H +
Sbjct: 326 REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---KKNFIHRN 382
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 383 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 439
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 440 DVWAFGVLLWEIAT 453

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 46/199 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK--SFMAECKALKNICHRNLVRF--- 134
           IG GSF  VY+G +  +   VA+K+L++      +  +F  E   L+   H N++ F   
Sbjct: 32  IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88
Query: 135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCD 160
                                             I IA   A  +DYLH      I+H D
Sbjct: 89  STAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKS---IIHRD 145
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTALDYDLGSEVSTN 219
            K +N+ L  D    IGDF LA  +   S   Q    +G    +    +     +  S  
Sbjct: 146 LKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQ 205
Query: 220 GDAYNYGILLLEMVTRRKP 238
            D Y +GI+L E++T + P
Sbjct: 206 SDVYAFGIVLYELMTGQLP 224

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + YL     + 
Sbjct: 96  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASKK 152
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 153 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 212
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 213 FTTKSDVWSFGVLLWELMTRGAP 235

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 46/204 (22%)
Query: 78  NLIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH----- 128
            +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H     
Sbjct: 34  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 129 ------------------------RNLVR----------FISIAIDVASALDYLHHHCQE 154
                                   RN +R           I   + VA  + YL     +
Sbjct: 94  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 150
Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     
Sbjct: 151 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ 210
Query: 215 EVSTNGDAYNYGILLLEMVTRRKP 238
           + +T  D +++G+LL E++TR  P
Sbjct: 211 KFTTKSDVWSFGVLLWELMTRGAP 234

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 88/226 (38%), Gaps = 51/226 (22%)
Query: 59  IPKEYYE----SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK 114
           +P E Y      L +AT+ F    LIG G F  VY+GV   + A VA+K  + +     +
Sbjct: 22  VPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIE 80
Query: 115 SFMAECKALKNICHRNLVRFIS-------------------------------------- 136
            F  E + L    H +LV  I                                       
Sbjct: 81  EFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQ 140
Query: 137 ---IAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ 193
              I I  A  L YLH      I+H D K  N+LLD +    I DF +++   E+     
Sbjct: 141 RLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHL 197
Query: 194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
                V+ T+GY   +Y +   ++   D Y++G++L E++  R  I
Sbjct: 198 XXV--VKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI 241

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + YL     + 
Sbjct: 97  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASKK 153
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 213
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 214 FTTKSDVWSFGVLLWELMTRGAP 236

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 46/199 (23%)
Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVR-- 133
           ++ +G G++  VY+G   L   +VA+K + ++ + GA  + + E   LK++ H N+V   
Sbjct: 7   LDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLH 66
Query: 134 ------------FISIAIDVASALD-----------------------YLHHHCQELILH 158
                       F  +  D+   LD                       Y H   ++ +LH
Sbjct: 67  DIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLH 123
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVS 217
            D KP N+L++      + DF LAR +   S PT++  N V  T+ Y   D  LGS + S
Sbjct: 124 RDLKPQNLLINERGELKLADFGLARAK---SIPTKTYDNEV-VTLWYRPPDILLGSTDYS 179
Query: 218 TNGDAYNYGILLLEMVTRR 236
           T  D +  G +  EM T R
Sbjct: 180 TQIDMWGVGCIFYEMATGR 198

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY+GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 286
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H +
Sbjct: 287 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRN 343
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    ++ S   
Sbjct: 344 LAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKS 400
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 401 DVWAFGVLLWEIAT 414

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 46/204 (22%)
Query: 78  NLIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH----- 128
            +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H     
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 129 ------------------------RNLVR----------FISIAIDVASALDYLHHHCQE 154
                                   RN +R           I   + VA  + YL     +
Sbjct: 91  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 147
Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     
Sbjct: 148 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ 207
Query: 215 EVSTNGDAYNYGILLLEMVTRRKP 238
           + +T  D +++G+LL E++TR  P
Sbjct: 208 KFTTKSDVWSFGVLLWELMTRGAP 231

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 46/204 (22%)
Query: 78  NLIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH----- 128
            +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H     
Sbjct: 28  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 87
Query: 129 ------------------------RNLVR----------FISIAIDVASALDYLHHHCQE 154
                                   RN +R           I   + VA  + YL     +
Sbjct: 88  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 144
Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     
Sbjct: 145 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ 204
Query: 215 EVSTNGDAYNYGILLLEMVTRRKP 238
           + +T  D +++G+LL E++TR  P
Sbjct: 205 KFTTKSDVWSFGVLLWELMTRGAP 228

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 53/229 (23%)
Query: 47  SKQPLR----LTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAI 102
           ++QPL     + L  A+PK+ +  +L   D   L   IG G+F  V+ G    +  +VA+
Sbjct: 88  TQQPLTKKSGVVLHRAVPKDKW--VLNHED-LVLGEQIGRGNFGEVFSGRLRADNTLVAV 144
Query: 103 KVLSIQCQGASKS-FMAECKALKNICHRNLVRFISIAI---------------------- 139
           K          K+ F+ E + LK   H N+VR I +                        
Sbjct: 145 KSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 204
Query: 140 ----------------DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                           D A+ ++YL   C    +H D    N L+       I DF ++R
Sbjct: 205 TEGARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSR 261
Query: 184 FRQEVSNPTQSSSNGVRRT-IGYTALDYDLGSEVSTNGDAYNYGILLLE 231
              E ++   ++S G+R+  + +TA +       S+  D +++GILL E
Sbjct: 262 ---EEADGVXAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWE 307

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + YL     + 
Sbjct: 97  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASKK 153
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 213
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 214 FTTKSDVWSFGVLLWELMTRGAP 236

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 46/204 (22%)
Query: 78  NLIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH----- 128
            +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H     
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 129 ------------------------RNLVR----------FISIAIDVASALDYLHHHCQE 154
                                   RN +R           I   + VA  + YL     +
Sbjct: 93  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASK 149
Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     
Sbjct: 150 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ 209
Query: 215 EVSTNGDAYNYGILLLEMVTRRKP 238
           + +T  D +++G+LL E++TR  P
Sbjct: 210 KFTTKSDVWSFGVLLWELMTRGAP 233

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 56  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 115
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + YL     + 
Sbjct: 116 LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASKK 172
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 173 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 232
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 233 FTTKSDVWSFGVLLWELMTRGAP 255

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 55  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 114
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + YL     + 
Sbjct: 115 LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASKK 171
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 172 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK 231
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 232 FTTKSDVWSFGVLLWELMTRGAP 254

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R I     + S L++LH   Q  I++ D KP NVLLD+D    I D  LA    E+    
Sbjct: 290 RAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA---VEL-KAG 342
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           Q+ + G   T G+ A +  LG E   + D +  G+ L EM+  R P 
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPF 389

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R I     + S L++LH   Q  I++ D KP NVLLD+D    I D  LA    E+    
Sbjct: 290 RAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA---VEL-KAG 342
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           Q+ + G   T G+ A +  LG E   + D +  G+ L EM+  R P 
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPF 389

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R I     + S L++LH   Q  I++ D KP NVLLD+D    I D  LA    E+    
Sbjct: 290 RAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA---VEL-KAG 342
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           Q+ + G   T G+ A +  LG E   + D +  G+ L EM+  R P 
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPF 389

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 53/229 (23%)
Query: 47  SKQPLR----LTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAI 102
           ++QPL     + L  A+PK+ +  +L   D   L   IG G+F  V+ G    +  +VA+
Sbjct: 88  TQQPLTKKSGVVLHRAVPKDKW--VLNHED-LVLGEQIGRGNFGEVFSGRLRADNTLVAV 144
Query: 103 KVLSIQCQGASKS-FMAECKALKNICHRNLVRFISIAI---------------------- 139
           K          K+ F+ E + LK   H N+VR I +                        
Sbjct: 145 KSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLR 204
Query: 140 ----------------DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                           D A+ ++YL   C    +H D    N L+       I DF ++R
Sbjct: 205 TEGARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSR 261
Query: 184 FRQEVSNPTQSSSNGVRRT-IGYTALDYDLGSEVSTNGDAYNYGILLLE 231
              E ++   ++S G+R+  + +TA +       S+  D +++GILL E
Sbjct: 262 ---EEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWE 307

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           R I     + S L++LH   Q  I++ D KP NVLLD+D    I D  LA    E+    
Sbjct: 290 RAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA---VEL-KAG 342
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           Q+ + G   T G+ A +  LG E   + D +  G+ L EM+  R P 
Sbjct: 343 QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPF 389

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 50/202 (24%)
Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--- 134
            ++G G+F  V +  +      VAIK   I+ +   K+F+ E + L  + H N+V+    
Sbjct: 14  EVVGRGAFGVVCKAKWRAKD--VAIK--QIESESERKAFIVELRQLSRVNHPNIVKLYGA 69
Query: 135 -----------------------------------ISIAIDVASALDYLHHHCQELILHC 159
                                              +S  +  +  + YLH    + ++H 
Sbjct: 70  CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHR 129
Query: 160 DPKPSNVLL-DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
           D KP N+LL        I DF  A   Q     T  ++N  + +  + A +   GS  S 
Sbjct: 130 DLKPPNLLLVAGGTVLKICDFGTACDIQ-----THMTNN--KGSAAWMAPEVFEGSNYSE 182
Query: 219 NGDAYNYGILLLEMVTRRKPID 240
             D +++GI+L E++TRRKP D
Sbjct: 183 KCDVFSWGIILWEVITRRKPFD 204

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 50/202 (24%)
Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--- 134
            ++G G+F  V +  +      VAIK   I+ +   K+F+ E + L  + H N+V+    
Sbjct: 15  EVVGRGAFGVVCKAKWRAKD--VAIK--QIESESERKAFIVELRQLSRVNHPNIVKLYGA 70
Query: 135 -----------------------------------ISIAIDVASALDYLHHHCQELILHC 159
                                              +S  +  +  + YLH    + ++H 
Sbjct: 71  CLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHR 130
Query: 160 DPKPSNVLL-DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
           D KP N+LL        I DF  A   Q     T  ++N  + +  + A +   GS  S 
Sbjct: 131 DLKPPNLLLVAGGTVLKICDFGTACDIQ-----THMTNN--KGSAAWMAPEVFEGSNYSE 183
Query: 219 NGDAYNYGILLLEMVTRRKPID 240
             D +++GI+L E++TRRKP D
Sbjct: 184 KCDVFSWGIILWEVITRRKPFD 205

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 41/198 (20%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  +G G F  V+ G ++ N   VA+K L      + ++F+ E   +K + H  LVR  
Sbjct: 16  LVKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLY 73
Query: 136 SIA------------IDVASALDYLHHH------CQELI------------------LHC 159
           ++             +   S LD+L           +LI                  +H 
Sbjct: 74  AVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHR 133
Query: 160 DPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN 219
           D + +NVL+   L   I DF LAR    + +   ++  G +  I +TA +       +  
Sbjct: 134 DLRAANVLVSESLMCKIADFGLARV---IEDNEYTAREGAKFPIKWTAPEAINFGCFTIK 190
Query: 220 GDAYNYGILLLEMVTRRK 237
            + +++GILL E+VT  K
Sbjct: 191 SNVWSFGILLYEIVTYGK 208

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 42  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 101
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + +L     + 
Sbjct: 102 LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASKK 158
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 159 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 218
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 219 FTTKSDVWSFGVLLWELMTRGAP 241

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + +L     + 
Sbjct: 98  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASKK 154
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 155 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 214
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 215 FTTKSDVWSFGVLLWELMTRGAP 237

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 35  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 94
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + +L     + 
Sbjct: 95  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASKK 151
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 152 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 211
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 212 FTTKSDVWSFGVLLWELMTRGAP 234

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + +L     + 
Sbjct: 97  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASKK 153
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 213
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 214 FTTKSDVWSFGVLLWELMTRGAP 236

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + +L     + 
Sbjct: 97  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASKK 153
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 154 FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQK 213
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 214 FTTKSDVWSFGVLLWELMTRGAP 236

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 46/203 (22%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICH------ 128
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H      
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 129 -----------------------RNLVR----------FISIAIDVASALDYLHHHCQEL 155
                                  RN +R           I   + VA  + +L     + 
Sbjct: 98  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASKK 154
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     +
Sbjct: 155 FVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMALESLQTQK 214
Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            +T  D +++G+LL E++TR  P
Sbjct: 215 FTTKSDVWSFGVLLWELMTRGAP 237

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 40/200 (20%)
Query: 79  LIGVGSFDAVYQGVF---DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICHRNLVRF 134
           +IG G F  VY G     D  +   A+K L+ I   G    F+ E   +K+  H N++  
Sbjct: 96  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 155
Query: 135 ISIAIDVASA----LDYLHH--------------HCQELI------------------LH 158
           + I +    +    L Y+ H                ++LI                  +H
Sbjct: 156 LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVH 215
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    N +LD      + DF LAR   +    +  +  G +  + + AL+     + +T
Sbjct: 216 RDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTT 275
Query: 219 NGDAYNYGILLLEMVTRRKP 238
             D +++G+LL E++TR  P
Sbjct: 276 KSDVWSFGVLLWELMTRGAP 295

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 46/194 (23%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISI-- 137
           +G G +  VY GV+      VA+K L        + F+ E   +K I H NLV+ + +  
Sbjct: 40  LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNLVQLLGVCT 98
Query: 138 -------------------------------------AIDVASALDYLHHHCQELILHCD 160
                                                A  ++SA++YL    ++  +H D
Sbjct: 99  LEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAMEYLE---KKNFIHRD 155
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF L+R    ++  T ++  G +  I +TA +    +  S   
Sbjct: 156 LAARNCLVGENHVVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKS 212
Query: 221 DAYNYGILLLEMVT 234
           D + +G+LL E+ T
Sbjct: 213 DVWAFGVLLWEIAT 226

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 42/191 (21%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           +G G F  V+   ++     VA+K +        ++F+AE   +K + H  LV+      
Sbjct: 23  LGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSV-EAFLAEANVMKTLQHDKLVKLHAVVT 80
Query: 135 ------ISIAIDVASALDYLH------HHCQELI------------------LHCDPKPS 164
                 I+  +   S LD+L           +LI                  +H D + +
Sbjct: 81  KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAA 140
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD-YDLGSEVSTNGDAY 223
           N+L+   L   I DF LAR    + +   ++  G +  I +TA +  + GS  +   D +
Sbjct: 141 NILVSASLVCKIADFGLARV---IEDNEYTAREGAKFPIKWTAPEAINFGS-FTIKSDVW 196
Query: 224 NYGILLLEMVT 234
           ++GILL+E+VT
Sbjct: 197 SFGILLMEIVT 207

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 54/222 (24%)
Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-----GASKSFMAECKALKNICHRNL 131
           ++ +G G F  VY+        +VAIK + +  +     G +++ + E K L+ + H N+
Sbjct: 15  LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI 74
Query: 132 VRF---------ISIAID----------------------------VASALDYLHHHCQE 154
           +           IS+  D                                L+YLH H   
Sbjct: 75  IGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW-- 132
Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            ILH D KP+N+LLD +    + DF LA+      +P ++  + V  T  Y A +   G+
Sbjct: 133 -ILHRDLKPNNLLLDENGVLKLADFGLAK---SFGSPNRAYXHQV-VTRWYRAPELLFGA 187
Query: 215 EVSTNG-DAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +   G D +  G +L E++ R   + F+  GD +L    R+
Sbjct: 188 RMYGVGVDMWAVGCILAELLLR---VPFL-PGDSDLDQLTRI 225

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 74  FPLINLIGVGSFDAVY---QGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN 130
           + +++ +G G    VY     + ++  A+ AI +   + +   K F  E      + H+N
Sbjct: 13  YKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN 72
Query: 131 LVRFISI-----------------------------AIDVA-----SALDYLHHHCQELI 156
           +V  I +                             ++D A       LD + H     I
Sbjct: 73  IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRI 132
Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV 216
           +H D KP N+L+D++    I DF +A+   E S    + +N V  T+ Y + +   G   
Sbjct: 133 VHRDIKPQNILIDSNKTLKIFDFGIAKALSETS---LTQTNHVLGTVQYFSPEQAKGEAT 189
Query: 217 STNGDAYNYGILLLEMVTRRKP 238
               D Y+ GI+L EM+    P
Sbjct: 190 DECTDIYSIGIVLYEMLVGEPP 211

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           + +  A DVA  +DYL    Q+  +H D    N+L+  +  A I DF L+R ++     T
Sbjct: 143 QLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKT 199
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
                  R  + + A++    S  +TN D ++YG+LL E+V+
Sbjct: 200 MG-----RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 236

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 45/210 (21%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI 126
           + ++  F  +  +G G++  VY+G+       VA+K + +  + G   + + E   +K +
Sbjct: 1   MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKEL 60
Query: 127 CHRNLVRFISIAI--------------DVASALD-----------------YLHHH---- 151
            H N+VR   +                D+   +D                 Y        
Sbjct: 61  KHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQG 120
Query: 152 ---CQE-LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
              C E  ILH D KP N+L++      +GDF LAR       P  + S+ V  T+ Y A
Sbjct: 121 LAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLAR---AFGIPVNTFSSEV-VTLWYRA 176
Query: 208 LDYDLGSEV-STNGDAYNYGILLLEMVTRR 236
            D  +GS   ST+ D ++ G +L EM+T +
Sbjct: 177 PDVLMGSRTYSTSIDIWSCGCILAEMITGK 206

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 18/107 (16%)
Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           + +  A DVA  +DYL    Q+  +H D    N+L+  +  A I DF L+R  QEV    
Sbjct: 133 QLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR-GQEVY--- 185
Query: 193 QSSSNGVRRTIG-----YTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
                 V++T+G     + A++    S  +TN D ++YG+LL E+V+
Sbjct: 186 ------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 226

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 44/199 (22%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
            +  IG G F  V+ G + LN+  VAIK +    +GA   + F+ E + +  + H  LV+
Sbjct: 11  FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIR---EGAMSEEDFIEEAEVMMKLSHPKLVQ 66
Query: 134 FISIAIDVAS---ALDYLHHHC--------------------------------QELILH 158
              + ++ A      +++ H C                                +  ++H
Sbjct: 67  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 126
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    N L+  +    + DF + RF   V +   +SS G +  + + + +    S  S+
Sbjct: 127 RDLAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSFSRYSS 183
Query: 219 NGDAYNYGILLLEMVTRRK 237
             D +++G+L+ E+ +  K
Sbjct: 184 KSDVWSFGVLMWEVFSEGK 202

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 45/229 (19%)
Query: 53  LTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA 112
           LT     P +    +LK T+ F  I ++G G+F  VY+G++      V I V  ++ + A
Sbjct: 31  LTPSGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREA 89
Query: 113 S-----KSFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH---- 151
           +     K  + E            C+ L  IC  + V+ I+  +     LDY+  H    
Sbjct: 90  TSPKANKEILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNI 148
Query: 152 --------CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
                   C ++           ++H D    NVL+       I DF LA+     +   
Sbjct: 149 GSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEK 206
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  + G +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 207 EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 255

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 44/199 (22%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
            +  IG G F  V+ G + LN+  VAIK +    +GA   + F+ E + +  + H  LV+
Sbjct: 14  FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIR---EGAMSEEDFIEEAEVMMKLSHPKLVQ 69
Query: 134 FISIAIDVAS---ALDYLHHHC--------------------------------QELILH 158
              + ++ A      +++ H C                                +  ++H
Sbjct: 70  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 129
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    N L+  +    + DF + RF   V +   +SS G +  + + + +    S  S+
Sbjct: 130 RDLAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSFSRYSS 186
Query: 219 NGDAYNYGILLLEMVTRRK 237
             D +++G+L+ E+ +  K
Sbjct: 187 KSDVWSFGVLMWEVFSEGK 205

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 50/202 (24%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
            +  IG G F  V+ G + LN+  VAIK +    +GA   + F+ E + +  + H  LV+
Sbjct: 12  FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIR---EGAMSEEDFIEEAEVMMKLSHPKLVQ 67
Query: 134 F--------------------------------------ISIAIDVASALDYLHHHCQEL 155
                                                  + + +DV   + YL   C   
Sbjct: 68  LYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC--- 124
Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           ++H D    N L+  +    + DF + RF   V +   +SS G +  + + + +    S 
Sbjct: 125 VIHRDLAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSFSR 181
Query: 216 VSTNGDAYNYGILLLEMVTRRK 237
            S+  D +++G+L+ E+ +  K
Sbjct: 182 YSSKSDVWSFGVLMWEVFSEGK 203

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 44/199 (22%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
            +  IG G F  V+ G + LN+  VAIK +    +GA   + F+ E + +  + H  LV+
Sbjct: 9   FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIR---EGAMSEEDFIEEAEVMMKLSHPKLVQ 64
Query: 134 FISIAIDVAS---ALDYLHHHC--------------------------------QELILH 158
              + ++ A      +++ H C                                +  ++H
Sbjct: 65  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 124
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    N L+  +    + DF + RF   V +   +SS G +  + + + +    S  S+
Sbjct: 125 RDLAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSFSRYSS 181
Query: 219 NGDAYNYGILLLEMVTRRK 237
             D +++G+L+ E+ +  K
Sbjct: 182 KSDVWSFGVLMWEVFSEGK 200

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 42/191 (21%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           +G G F  V+   ++     VA+K +        ++F+AE   +K + H  LV+      
Sbjct: 196 LGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSV-EAFLAEANVMKTLQHDKLVKLHAVVT 253
Query: 135 ------ISIAIDVASALDYLH------HHCQELI------------------LHCDPKPS 164
                 I+  +   S LD+L           +LI                  +H D + +
Sbjct: 254 KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAA 313
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD-YDLGSEVSTNGDAY 223
           N+L+   L   I DF LAR    + +   ++  G +  I +TA +  + GS  +   D +
Sbjct: 314 NILVSASLVCKIADFGLARV---IEDNEYTAREGAKFPIKWTAPEAINFGS-FTIKSDVW 369
Query: 224 NYGILLLEMVT 234
           ++GILL+E+VT
Sbjct: 370 SFGILLMEIVT 380

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 134 FISIAIDVASALDYLHHHCQELILHCDPKPSNVLL-----DNDL---FAHIGDFELARFR 185
            ++ A+ +A  ++YLH      I+H D K SN+L+     + DL      I DF LAR  
Sbjct: 107 LVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR-- 164
Query: 186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
            E    T+ S+ G      + A +    S  S   D ++YG+LL E++T   P
Sbjct: 165 -EWHRTTKMSAAG---AYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 44/199 (22%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
            +  IG G F  V+ G + LN+  VAIK +    +GA   + F+ E + +  + H  LV+
Sbjct: 11  FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIR---EGAMSEEDFIEEAEVMMKLSHPKLVQ 66
Query: 134 FISIAIDVAS---ALDYLHHHC--------------------------------QELILH 158
              + ++ A      +++ H C                                +  ++H
Sbjct: 67  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEASVIH 126
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    N L+  +    + DF + RF   V +   +SS G +  + + + +    S  S+
Sbjct: 127 RDLAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSFSRYSS 183
Query: 219 NGDAYNYGILLLEMVTRRK 237
             D +++G+L+ E+ +  K
Sbjct: 184 KSDVWSFGVLMWEVFSEGK 202

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 40/197 (20%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
            +  IG G F  V+ G + LN+  VAIK +  +   +   F+ E + +  + H  LV+  
Sbjct: 31  FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIK-EGSMSEDDFIEEAEVMMKLSHPKLVQLY 88
Query: 136 SIAIDVAS---ALDYLHHHC--------------------------------QELILHCD 160
            + ++ A      +++ H C                                +  ++H D
Sbjct: 89  GVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRD 148
Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNG 220
               N L+  +    + DF + RF   V +   +SS G +  + + + +    S  S+  
Sbjct: 149 LAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKS 205
Query: 221 DAYNYGILLLEMVTRRK 237
           D +++G+L+ E+ +  K
Sbjct: 206 DVWSFGVLMWEVFSEGK 222

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 48/194 (24%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  IG G F  V  G +  N+  VA+K   I+    +++F+AE   +  + H NLV+ +
Sbjct: 10  LLQTIGKGEFGDVMLGDYRGNK--VAVK--CIKNDATAQAFLAEASVMTQLRHSNLVQLL 65
Query: 136 SIAID-------------VASALDYLHHH-----------------CQEL-------ILH 158
            + ++               S +DYL                    C+ +        +H
Sbjct: 66  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVH 125
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    NVL+  D  A + DF L +          S+ +  +  + +TA +     + ST
Sbjct: 126 RDLAARNVLVSEDNVAKVSDFGLTK-------EASSTQDTGKLPVKWTAPEALREKKFST 178
Query: 219 NGDAYNYGILLLEM 232
             D +++GILL E+
Sbjct: 179 KSDVWSFGILLWEI 192

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 48/196 (24%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  IG G F  V  G +  N+  VA+K   I+    +++F+AE   +  + H NLV+ +
Sbjct: 25  LLQTIGKGEFGDVMLGDYRGNK--VAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLL 80
Query: 136 SIAIDVASAL-------------DYLHHH-----------------CQEL-------ILH 158
            + ++    L             DYL                    C+ +        +H
Sbjct: 81  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVH 140
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    NVL+  D  A + DF L +          S+ +  +  + +TA +     + ST
Sbjct: 141 RDLAARNVLVSEDNVAKVSDFGLTK-------EASSTQDTGKLPVKWTAPEALREKKFST 193
Query: 219 NGDAYNYGILLLEMVT 234
             D +++GILL E+ +
Sbjct: 194 KSDVWSFGILLWEIYS 209

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 65/220 (29%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  IG G F  V  G +  N+  VA+K   I+    +++F+AE   +  + H NLV+ +
Sbjct: 197 LLQTIGKGEFGDVMLGDYRGNK--VAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLL 252
Query: 136 SIAIDVASAL-------------DYLHHH-----------------CQEL-------ILH 158
            + ++    L             DYL                    C+ +        +H
Sbjct: 253 GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVH 312
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    NVL+  D  A + DF L +          S+ +  +  + +TA +     + ST
Sbjct: 313 RDLAARNVLVSEDNVAKVSDFGLTK-------EASSTQDTGKLPVKWTAPEALREKKFST 365
Query: 219 NGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP 258
             D +++GILL E                 +++F R+ +P
Sbjct: 366 KSDVWSFGILLWE-----------------IYSFGRVPYP 388

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 7   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 60
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 61  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLL 120
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 121 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 180
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 181 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 228

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 45/236 (19%)
Query: 46  PSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVA 101
           P+ + L        P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VA
Sbjct: 15  PTTENLYFQGSGEAPNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVA 73
Query: 102 IKVL-SIQCQGASKSFMAE------------CKALKNICHRNLVRFISIAIDVASALDYL 148
           IK L       A+K  + E            C+ L  IC  + V+ I+  +     LDY+
Sbjct: 74  IKELREATSPKANKEILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYV 132
Query: 149 HHH------------CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFR 185
             H            C ++           ++H D    NVL+       I DF LA+  
Sbjct: 133 REHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 192
Query: 186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
              +   +  + G +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 193 G--AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 246

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 48/196 (24%)
Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L+  IG G F  V  G +  N+  VA+K   I+    +++F+AE   +  + H NLV+ +
Sbjct: 16  LLQTIGKGEFGDVMLGDYRGNK--VAVKC--IKNDATAQAFLAEASVMTQLRHSNLVQLL 71
Query: 136 SIAIDVASAL-------------DYLHHH-----------------CQEL-------ILH 158
            + ++    L             DYL                    C+ +        +H
Sbjct: 72  GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVH 131
Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            D    NVL+  D  A + DF L +          S+ +  +  + +TA +    +  ST
Sbjct: 132 RDLAARNVLVSEDNVAKVSDFGLTK-------EASSTQDTGKLPVKWTAPEALREAAFST 184
Query: 219 NGDAYNYGILLLEMVT 234
             D +++GILL E+ +
Sbjct: 185 KSDVWSFGILLWEIYS 200

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH +C   I+H D KP N+L+ +     + DF LAR         Q + + V  T+
Sbjct: 124 GLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS-----YQMALDPVVVTL 175
Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
            Y A +  L S  +T  D ++ G +  EM  RRKP+
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMF-RRKPL 210

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 133 RFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           + +  A DVA  +DYL    Q+  +H +    N+L+  +  A I DF L+R ++     T
Sbjct: 140 QLLHFAADVARGMDYL---SQKQFIHRNLAARNILVGENYVAKIADFGLSRGQEVYVKKT 196
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
                  R  + + A++    S  +TN D ++YG+LL E+V+
Sbjct: 197 MG-----RLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 233

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 21  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 79
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 80  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 138
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 139 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 196
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 197 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 231

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 70  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAK 128
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 186
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF-RQEV 188
            +++ + +   +A+ + YL        +H D    N+L++++L   + DF L+RF   + 
Sbjct: 133 TVIQLVGMLRGIAAGMKYL---ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDT 189
Query: 189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
           S+PT +S+ G +  I +TA +     + ++  D ++YGI++ E+++
Sbjct: 190 SDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 235

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 4   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 62
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 63  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 121
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 122 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 179
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 180 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH +C   I+H D KP N+L+ +     + DF LAR         Q +   V  T+
Sbjct: 132 GLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS-----YQMALTPVVVTL 183
Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
            Y A +  L S  +T  D ++ G +  EM  RRKP+
Sbjct: 184 WYRAPEVLLQSTYATPVDMWSVGCIFAEMF-RRKPL 218

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 7   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 65
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 66  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 125 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 182
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 183 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 7   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 65
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 66  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 125 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 182
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 183 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 3   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 56
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 57  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 116
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 117 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 176
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 177 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 224

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 11  PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 69
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 70  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 128
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 129 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 186
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 187 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 228

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 7   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 60
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 61  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 120
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 121 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 180
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 181 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 228

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 6   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 64
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 65  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 123
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 124 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 181
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 182 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 11  PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 64
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 65  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 124
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 125 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 184
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 185 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 232

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 5   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 63
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 64  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 122
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 123 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 180
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 181 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 215

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 70  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 186
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 7   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 65
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 66  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 125 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 182
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 183 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 10  PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 68
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 69  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 127
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 128 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 185
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 186 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 227

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 35  PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 88
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 89  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 148
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 149 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 208
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 209 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 256

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 2   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 55
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 56  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 115
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 116 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 175
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 176 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 223

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 8   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 61
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 62  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 121
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 122 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 181
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 182 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 229

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 4   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 57
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 117
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 118 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 177
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 178 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 225

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 9   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 62
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 63  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 122
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 123 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 182
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 183 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 230

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 10  PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 63
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 64  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 123
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 124 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 183
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 184 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 231

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 4   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 57
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 117
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 118 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 177
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 178 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 225

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 8   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 66
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 67  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAE 125
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 126 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 183
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 184 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 218

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 132 VRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP 191
            R +  A ++   L+ LH   +E I++ D KP N+LLD+     I D  LA     V  P
Sbjct: 286 ARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLA-----VHVP 337
Query: 192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
              +  G   T+GY A +       + + D +  G LL EM+  + P 
Sbjct: 338 EGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF 385

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH +C   I+H D KP N+L+ +     + DF LAR         Q +   V  T+
Sbjct: 124 GLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS-----YQMALAPVVVTL 175
Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
            Y A +  L S  +T  D ++ G +  EM  RRKP+
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMF-RRKPL 210

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 76  LINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
            +  +G G+F +V    Y  + D    VVA+K L    +   + F  E + LK++ H N+
Sbjct: 32  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 91
Query: 132 VRFISIA--------------IDVASALDYLHHHCQEL---------------------- 155
           V++  +               +   S  DYL  H + +                      
Sbjct: 92  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 151
Query: 156 -ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N+L++N+    IGDF L +   +     +    G    I + A +    S
Sbjct: 152 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG-ESPIFWYAPESLTES 210
Query: 215 EVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
           + S   D +++G++L E+ T     +  P +FM
Sbjct: 211 KFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 243

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 123 LKNICHR----NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
           L++I H        R I +  D   AL++ H   Q  I+H D KP+N+++       + D
Sbjct: 103 LRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMD 159
Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           F +AR   +  N + + +  V  T  Y + +   G  V    D Y+ G +L E++T   P
Sbjct: 160 FGIARAIADSGN-SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
Query: 239 IDFMFEGD 246
               F GD
Sbjct: 219 ----FTGD 222

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 132 VRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP 191
            R +  A ++   L+ LH   +E I++ D KP N+LLD+     I D  LA     V  P
Sbjct: 286 ARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLA-----VHVP 337
Query: 192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
              +  G   T+GY A +       + + D +  G LL EM+  + P 
Sbjct: 338 EGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF 385

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 123 LKNICHR----NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
           L++I H        R I +  D   AL++ H   Q  I+H D KP+N+L+       + D
Sbjct: 103 LRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANILISATNAVKVVD 159
Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           F +AR   +  N    ++  V  T  Y + +   G  V    D Y+ G +L E++T   P
Sbjct: 160 FGIARAIADSGNSVXQTA-AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
Query: 239 IDFMFEGD 246
               F GD
Sbjct: 219 ----FTGD 222

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 76  LINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
            +  +G G+F +V    Y  + D    VVA+K L    +   + F  E + LK++ H N+
Sbjct: 32  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI 91
Query: 132 VRFISIA--------------IDVASALDYLHHHCQEL---------------------- 155
           V++  +               +   S  DYL  H + +                      
Sbjct: 92  VKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK 151
Query: 156 -ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N+L++N+    IGDF L +   +     +    G    I + A +    S
Sbjct: 152 RYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG-ESPIFWYAPESLTES 210
Query: 215 EVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
           + S   D +++G++L E+ T     +  P +FM
Sbjct: 211 KFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 243

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 12  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 70
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I   +     LDY+  H            C ++  
Sbjct: 71  VMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAK 129
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 130 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 187
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 188 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 222

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 123 LKNICHR----NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
           L++I H        R I +  D   AL++ H   Q  I+H D KP+N+++       + D
Sbjct: 103 LRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMD 159
Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           F +AR   +  N + + +  V  T  Y + +   G  V    D Y+ G +L E++T   P
Sbjct: 160 FGIARAIADSGN-SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
Query: 239 IDFMFEGD 246
               F GD
Sbjct: 219 ----FTGD 222

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 123 LKNICHR----NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
           L++I H        R I +  D   AL++ H   Q  I+H D KP+N+++       + D
Sbjct: 120 LRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMD 176
Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           F +AR   +  N + + +  V  T  Y + +   G  V    D Y+ G +L E++T   P
Sbjct: 177 FGIARAIADSGN-SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 235
Query: 239 IDFMFEGD 246
               F GD
Sbjct: 236 ----FTGD 239

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 123 LKNICHR----NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
           L++I H        R I +  D   AL++ H   Q  I+H D KP+N+++       + D
Sbjct: 103 LRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMD 159
Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           F +AR   +  N + + +  V  T  Y + +   G  V    D Y+ G +L E++T   P
Sbjct: 160 FGIARAIADSGN-SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
Query: 239 IDFMFEGD 246
               F GD
Sbjct: 219 ----FTGD 222

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 123 LKNICHR----NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
           L++I H        R I +  D   AL++ H   Q  I+H D KP+N+++       + D
Sbjct: 103 LRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMD 159
Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           F +AR   +  N + + +  V  T  Y + +   G  V    D Y+ G +L E++T   P
Sbjct: 160 FGIARAIADSGN-SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
Query: 239 IDFMFEGD 246
               F GD
Sbjct: 219 ----FTGD 222

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH +C   I+H D KP N+L+ +     + DF LAR         Q +   V  T+
Sbjct: 124 GLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYS-----YQMALFPVVVTL 175
Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
            Y A +  L S  +T  D ++ G +  EM  RRKP+
Sbjct: 176 WYRAPEVLLQSTYATPVDMWSVGCIFAEMF-RRKPL 210

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 7   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 65
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I   +     LDY+  H           
Sbjct: 66  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLN 124
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 125 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 182
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 183 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 224

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 91/235 (38%), Gaps = 65/235 (27%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 4   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 57
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 117
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQE------VSNPT 192
                             +H D    N+L++N+    IGDF L +   +      V  P 
Sbjct: 118 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPG 177
Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
           +S        I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 178 ESP-------IFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 225

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANSF 194
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +       S + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 195 VGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 254
Query: 254 RMAFPN 259
              FP 
Sbjct: 255 EKFFPK 260

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 15  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 73
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I   +     LDY+  H            C ++  
Sbjct: 74  VMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 132
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 133 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 190
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 191 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 225

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 12  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 70
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I   +     LDY+  H            C ++  
Sbjct: 71  VMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 129
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 130 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 187
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 188 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 222

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 6   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 64
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I   +     LDY+  H           
Sbjct: 65  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLN 123
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF LA+     +   +  + G 
Sbjct: 124 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGG 181
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 182 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH H    ++H D KP N+L+ +     + DF LAR         Q +   V  T+
Sbjct: 132 GLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS-----FQMALTSVVVTL 183
Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            Y A +  L S  +T  D ++ G +  EM  RRKP   +F G  ++    ++
Sbjct: 184 WYRAPEVLLQSSYATPVDLWSVGCIFAEMF-RRKP---LFRGSSDVDQLGKI 231

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I   +     LDY+  H            C ++  
Sbjct: 70  VMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF LA+     +   +  + G +  I + 
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIKWM 186
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH H    ++H D KP N+L+ +     + DF LAR         Q +   V  T+
Sbjct: 132 GLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS-----FQMALTSVVVTL 183
Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            Y A +  L S  +T  D ++ G +  EM  RRKP   +F G  ++    ++
Sbjct: 184 WYRAPEVLLQSSYATPVDLWSVGCIFAEMF-RRKP---LFRGSSDVDQLGKI 231

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTI 203
            LD+LH H    ++H D KP N+L+ +     + DF LAR         Q +   V  T+
Sbjct: 132 GLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS-----FQMALTSVVVTL 183
Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            Y A +  L S  +T  D ++ G +  EM  RRKP   +F G  ++    ++
Sbjct: 184 WYRAPEVLLQSSYATPVDLWSVGCIFAEMF-RRKP---LFRGSSDVDQLGKI 231

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 82/200 (41%), Gaps = 47/200 (23%)
Query: 78  NLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQCQGASK-SFMAECKALKNICHRNLV 132
            +IG G F  VY+G+   +       VAIK L        +  F+ E   +    H N++
Sbjct: 50  KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNII 109
Query: 133 RFISI-----------------AID---------------------VASALDYLHHHCQE 154
           R   +                 A+D                     +A+ + YL +    
Sbjct: 110 RLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN-- 167
Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N+L++++L   + DF L+R  ++    T ++S G +  I +TA +     
Sbjct: 168 -YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGG-KIPIRWTAPEAISYR 225
Query: 215 EVSTNGDAYNYGILLLEMVT 234
           + ++  D +++GI++ E++T
Sbjct: 226 KFTSASDVWSFGIVMWEVMT 245

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 7   PTQFEERHLK------FLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 60
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  +YL  H + +      
Sbjct: 61  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLL 120
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H D    N+L++N+    IGDF L +   +     +    G
Sbjct: 121 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 180
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 181 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 228

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 43/226 (19%)
Query: 55  LRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQCQ 110
           +  A P +    +LK T+    + ++G G+F  VY+G++  +    +  VAIKVL     
Sbjct: 1   MSGAAPNQALLRILKETE-LRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTS 59
Query: 111 -GASKSFMAECKA-----------LKNICHRNLVRFISIAIDVASALDYLHHH------- 151
             A+K  + E              L  IC  + V+ ++  +     LD++  +       
Sbjct: 60  PKANKEILDEAYVMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRGRLGSQ 119
Query: 152 -----CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS 195
                C ++           ++H D    NVL+ +     I DF LAR      + T+  
Sbjct: 120 DLLNWCMQIAKGMSYLEDVRLVHRDLAARNVLVKSPNHVKITDFGLARLLD--IDETEYH 177
Query: 196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           ++G +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 178 ADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYD 223

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 52/191 (27%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----- 134
           +G G F  V+   ++     VA+K +        ++F+AE   +K + H  LV+      
Sbjct: 190 LGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSV-EAFLAEANVMKTLQHDKLVKLHAVVT 247
Query: 135 ------ISIAIDVASALDYLH------HHCQELI------------------LHCDPKPS 164
                 I+  +   S LD+L           +LI                  +H D + +
Sbjct: 248 KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAA 307
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD-YDLGSEVSTNGDAY 223
           N+L+   L   I DF LAR              G +  I +TA +  + GS  +   D +
Sbjct: 308 NILVSASLVCKIADFGLARV-------------GAKFPIKWTAPEAINFGS-FTIKSDVW 353
Query: 224 NYGILLLEMVT 234
           ++GILL+E+VT
Sbjct: 354 SFGILLMEIVT 364

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 54/200 (27%)
Query: 80  IGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G F  V    ++G +D     VAIK++  +   +   F+ E K + N+ H  LV+  
Sbjct: 32  LGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLY 85
Query: 136 SIAI--------------------------------------DVASALDYLHHHCQELIL 157
            +                                        DV  A++YL     +  L
Sbjct: 86  GVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 142
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N L+++     + DF L+R+   V +  ++SS G +  + ++  +  + S+ S
Sbjct: 143 HRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEETSSVGSKFPVRWSPPEVLMYSKFS 199
Query: 218 TNGDAYNYGILLLEMVTRRK 237
           +  D + +G+L+ E+ +  K
Sbjct: 200 SKSDIWAFGVLMWEIYSLGK 219

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE-V 188
            ++R I+  +   + ++Y+H               N+L++++L   + DF L+RF ++  
Sbjct: 113 GMLRGIAAGMKYLADMNYVHRALAA---------RNILVNSNLVCKVSDFGLSRFLEDDT 163
Query: 189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
           S+PT +S+ G +  I +TA +     + ++  D ++YGI++ E+++
Sbjct: 164 SDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 209

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 72  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 130
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF  A+     +   +  + G +  I + 
Sbjct: 131 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLG--AEEKEYHAEGGKVPIKWM 188
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 189 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 11  PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 69
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I+  +     LDY+  H           
Sbjct: 70  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN 128
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF  A+     +   +  + G 
Sbjct: 129 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLG--AEEKEYHAEGG 186
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 187 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 228

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 11  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 69
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I+  +     LDY+  H            C ++  
Sbjct: 70  VMASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 128
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF  A+     +   +  + G +  I + 
Sbjct: 129 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLG--AEEKEYHAEGGKVPIKWM 186
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 187 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 54/197 (27%)
Query: 80  IGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G F  V    ++G +D     VAIK++  +   +   F+ E K + N+ H  LV+  
Sbjct: 17  LGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLY 70
Query: 136 SIAI--------------------------------------DVASALDYLHHHCQELIL 157
            +                                        DV  A++YL     +  L
Sbjct: 71  GVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 127
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N L+++     + DF L+R+   V +   +SS G +  + ++  +  + S+ S
Sbjct: 128 HRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSRGSKFPVRWSPPEVLMYSKFS 184
Query: 218 TNGDAYNYGILLLEMVT 234
           +  D + +G+L+ E+ +
Sbjct: 185 SKSDIWAFGVLMWEIYS 201

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 49/205 (23%)
Query: 76  LINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
           L+  +G G F  V    ++G +D+  AV  IK  S+    +   F  E + +  + H  L
Sbjct: 12  LLKELGSGQFGVVKLGKWKGQYDV--AVKMIKEGSM----SEDEFFQEAQTMMKLSHPKL 65
Query: 132 VRFISIA------------IDVASALDYLHHHCQEL-----------------------I 156
           V+F  +             I     L+YL  H + L                        
Sbjct: 66  VKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF 125
Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV 216
           +H D    N L+D DL   + DF + R+   V +    SS G +  + ++A +     + 
Sbjct: 126 IHRDLAARNCLVDRDLCVKVSDFGMTRY---VLDDQYVSSVGTKFPVKWSAPEVFHYFKY 182
Query: 217 STNGDAYNYGILLLEMVTRRK-PID 240
           S+  D + +GIL+ E+ +  K P D
Sbjct: 183 SSKSDVWAFGILMWEVFSLGKMPYD 207

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 53/229 (23%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    Y  + D    VVA+K L    +   + 
Sbjct: 5   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 58
Query: 116 FMAECKALKNICHRNLVRFISIA--------------IDVASALDYLHHHCQEL------ 155
           F  E + LK++ H N+V++  +               +   S  DYL  H + +      
Sbjct: 59  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 118
Query: 156 -----------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
                             +H +    N+L++N+    IGDF L +   +     +    G
Sbjct: 119 QYTSQICKGMEYLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPG 178
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-----RRKPIDFM 242
               I + A +    S+ S   D +++G++L E+ T     +  P +FM
Sbjct: 179 -ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFM 226

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANAF 192
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 252
Query: 254 RMAFPN 259
              FP 
Sbjct: 253 EKFFPK 258

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 40/216 (18%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKV-LSIQCQGASKSFMAECKALKNICHRNLVRFISI- 137
           IG G++  VY+   +        K+ L  + +G   + + E   LK + H N+V+   + 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 138 --------------------------AIDVASALDYLHH------HCQEL-ILHCDPKPS 164
                                      ++  +A  +L        +C +  +LH D KP 
Sbjct: 70  HTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQ 129
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAY 223
           N+L++ +    I DF LAR       P +  ++ V  T+ Y A D  +GS + ST  D +
Sbjct: 130 NLLINREGELKIADFGLAR---AFGIPVRKYTHEV-VTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 224 NYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN 259
           + G +  EMV        + E D  +  F  +  PN
Sbjct: 186 SVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPN 221

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 82/213 (38%), Gaps = 49/213 (23%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVL---------SIQCQGASK---S 115
           LK  D F L  ++G GSF  V+   F       AIK L          ++C    K   S
Sbjct: 15  LKIED-FELHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLS 73
Query: 116 FMAECKALKNI----------------------------CHR-NLVRFISIAIDVASALD 146
              E   L ++                            CH+ +L R    A ++   L 
Sbjct: 74  LAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQ 133
Query: 147 YLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
           +LH      I++ D K  N+LLD D    I DF + +     +    + +N    T  Y 
Sbjct: 134 FLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCK----ENMLGDAKTNEFCGTPDYI 186
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
           A +  LG + + + D +++G+LL EM+  + P 
Sbjct: 187 APEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF 219

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 86/216 (39%), Gaps = 40/216 (18%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKV-LSIQCQGASKSFMAECKALKNICHRNLVRFISI- 137
           IG G++  VY+   +        K+ L  + +G   + + E   LK + H N+V+   + 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 138 --------------------------AIDVASALDYLHH------HCQEL-ILHCDPKPS 164
                                      ++  +A  +L        +C +  +LH D KP 
Sbjct: 70  HTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQ 129
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAY 223
           N+L++ +    I DF LAR       P +  ++ V  T+ Y A D  +GS + ST  D +
Sbjct: 130 NLLINREGELKIADFGLAR---AFGIPVRKYTHEV-VTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 224 NYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN 259
           + G +  EMV        + E D  +  F  +  PN
Sbjct: 186 SVGCIFAEMVNGAPLFPGVSEADQLMRIFRILGTPN 221

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 117 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 171
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 172 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 231
Query: 254 RMAFPN 259
              FP 
Sbjct: 232 EKFFPK 237

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 116 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 170
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 171 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 230
Query: 254 RMAFPN 259
              FP 
Sbjct: 231 EKFFPK 236

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 118 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 172
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 173 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 232
Query: 254 RMAFPN 259
              FP 
Sbjct: 233 EKFFPK 238

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 141 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANSF 195
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 196 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 255
Query: 254 RMAFPN 259
              FP 
Sbjct: 256 EKFFPK 261

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 115 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 169
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 170 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 229
Query: 254 RMAFPN 259
              FP 
Sbjct: 230 EKFFPK 235

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 54/200 (27%)
Query: 80  IGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G F  V    ++G +D     VAIK++  +   +   F+ E K + N+ H  LV+  
Sbjct: 17  LGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLY 70
Query: 136 SIAI--------------------------------------DVASALDYLHHHCQELIL 157
            +                                        DV  A++YL     +  L
Sbjct: 71  GVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 127
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N L+++     + DF L+R+   V +   +SS G +  + ++  +  + S+ S
Sbjct: 128 HRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLMYSKFS 184
Query: 218 TNGDAYNYGILLLEMVTRRK 237
           +  D + +G+L+ E+ +  K
Sbjct: 185 SKSDIWAFGVLMWEIYSLGK 204

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 54/200 (27%)
Query: 80  IGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G F  V    ++G +D     VAIK++  +   +   F+ E K + N+ H  LV+  
Sbjct: 16  LGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLY 69
Query: 136 SIAI--------------------------------------DVASALDYLHHHCQELIL 157
            +                                        DV  A++YL     +  L
Sbjct: 70  GVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 126
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N L+++     + DF L+R+   V +   +SS G +  + ++  +  + S+ S
Sbjct: 127 HRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLMYSKFS 183
Query: 218 TNGDAYNYGILLLEMVTRRK 237
           +  D + +G+L+ E+ +  K
Sbjct: 184 SKSDIWAFGVLMWEIYSLGK 203

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 54/197 (27%)
Query: 80  IGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G F  V    ++G +D     VAIK++  +   +   F+ E K + N+ H  LV+  
Sbjct: 12  LGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLY 65
Query: 136 SIAI--------------------------------------DVASALDYLHHHCQELIL 157
            +                                        DV  A++YL     +  L
Sbjct: 66  GVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 122
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N L+++     + DF L+R+   V +   +SS G +  + ++  +  + S+ S
Sbjct: 123 HRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLMYSKFS 179
Query: 218 TNGDAYNYGILLLEMVT 234
           +  D + +G+L+ E+ +
Sbjct: 180 SKSDIWAFGVLMWEIYS 196

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 54/200 (27%)
Query: 80  IGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G F  V    ++G +D     VAIK++  +   +   F+ E K + N+ H  LV+  
Sbjct: 32  LGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLY 85
Query: 136 SIAI--------------------------------------DVASALDYLHHHCQELIL 157
            +                                        DV  A++YL     +  L
Sbjct: 86  GVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 142
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N L+++     + DF L+R+   V +   +SS G +  + ++  +  + S+ S
Sbjct: 143 HRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLMYSKFS 199
Query: 218 TNGDAYNYGILLLEMVTRRK 237
           +  D + +G+L+ E+ +  K
Sbjct: 200 SKSDIWAFGVLMWEIYSLGK 219

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 137 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANSF 191
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 192 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 251
Query: 254 RMAFPN 259
              FP 
Sbjct: 252 EKFFPK 257

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 40/216 (18%)
Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKV-LSIQCQGASKSFMAECKALKNICHRNLVRFISIA 138
           IG G++  VY+   +        K+ L  + +G   + + E   LK + H N+V+   + 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 139 IDVASALDYLHHHCQEL----------------------------------ILHCDPKPS 164
                 +    H  Q+L                                  +LH D KP 
Sbjct: 70  HTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQ 129
Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAY 223
           N+L++ +    I DF LAR       P +  ++ +  T+ Y A D  +GS + ST  D +
Sbjct: 130 NLLINREGELKIADFGLAR---AFGIPVRKYTHEI-VTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 224 NYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN 259
           + G +  EMV        + E D  +  F  +  PN
Sbjct: 186 SVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPN 221

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 8   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 66
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I   +     LDY+  H           
Sbjct: 67  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLN 125
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF  A+     +   +  + G 
Sbjct: 126 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLG--AEEKEYHAEGG 183
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 184 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 225

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 194
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 254
Query: 254 RMAFPN 259
              FP 
Sbjct: 255 EKFFPK 260

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 80/200 (40%), Gaps = 54/200 (27%)
Query: 80  IGVGSFDAV----YQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +G G F  V    ++G +D     VAIK++  +   +   F+ E K + N+ H  LV+  
Sbjct: 23  LGTGQFGVVKYGKWRGQYD-----VAIKMIK-EGSMSEDEFIEEAKVMMNLSHEKLVQLY 76
Query: 136 SIAI--------------------------------------DVASALDYLHHHCQELIL 157
            +                                        DV  A++YL     +  L
Sbjct: 77  GVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFL 133
Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    N L+++     + DF L+R+   V +   +SS G +  + ++  +  + S+ S
Sbjct: 134 HRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLMYSKFS 190
Query: 218 TNGDAYNYGILLLEMVTRRK 237
           +  D + +G+L+ E+ +  K
Sbjct: 191 SKSDIWAFGVLMWEIYSLGK 210

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 45/215 (20%)
Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASKSFMAE-- 119
           +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K  + E  
Sbjct: 13  ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 71
Query: 120 ----------CKALKNICHRNLVRFISIAIDVASALDYLHHH------------CQEL-- 155
                     C+ L  IC  + V+ I   +     LDY+  H            C ++  
Sbjct: 72  VMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 130
Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
                    ++H D    NVL+       I DF  A+     +   +  + G +  I + 
Sbjct: 131 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLG--AEEKEYHAEGGKVPIKWM 188
Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 189 ALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 127 CHR-NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR 185
           CH+ +L R    A ++   L +LH    + I++ D K  N+LLD D    I DF + +  
Sbjct: 112 CHKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCK-- 166
Query: 186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
              +    + +N    T  Y A +  LG + + + D +++G+LL EM+  + P 
Sbjct: 167 --ENMLGDAKTNXFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPF 218

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 45/222 (20%)
Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVL-SIQCQGASK 114
           P +    +LK T+ F  I ++G G+F  VY+G++    +  +  VAIK L       A+K
Sbjct: 6   PNQALLRILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 64
Query: 115 SFMAE------------CKALKNICHRNLVRFISIAIDVASALDYLHHH----------- 151
             + E            C+ L  IC  + V+ I   +     LDY+  H           
Sbjct: 65  EILDEAYVMASVDNPHVCRLL-GICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYLLN 123
Query: 152 -CQEL-----------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            C ++           ++H D    NVL+       I DF  A+     +   +  + G 
Sbjct: 124 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGRAKLLG--AEEKEYHAEGG 181
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID 240
           +  I + AL+  L    +   D ++YG+ + E++T   KP D
Sbjct: 182 KVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 223

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 141 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 195
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 196 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 255
Query: 254 RMAFPN 259
              FP 
Sbjct: 256 EKFFPK 261

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 192
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 252
Query: 254 RMAFPN 259
              FP 
Sbjct: 253 EKFFPK 258

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 122 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 176
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 177 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 236
Query: 254 RMAFPN 259
              FP 
Sbjct: 237 EKFFPK 242

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 192
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 252
Query: 254 RMAFPN 259
              FP 
Sbjct: 253 EKFFPK 258

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 194
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 254
Query: 254 RMAFPN 259
              FP 
Sbjct: 255 EKFFPK 260

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 138 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 192
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 193 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 252
Query: 254 RMAFPN 259
              FP 
Sbjct: 253 EKFFPK 258

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 194
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 254
Query: 254 RMAFPN 259
              FP 
Sbjct: 255 EKFFPK 260

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 145 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 199
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 200 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 259
Query: 254 RMAFPN 259
              FP 
Sbjct: 260 EKFFPK 265

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 194
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
             T  Y + +         + D +  G ++ ++V    P 
Sbjct: 195 VGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAGLPPF 234

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 137 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 191
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPID-----FMFEGDLNL-HNFA 253
             T  Y + +         + D +  G ++ ++V    P        +F+  + L ++F 
Sbjct: 192 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFP 251
Query: 254 RMAFPN 259
              FP 
Sbjct: 252 EKFFPK 257

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 62/220 (28%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC 127
           L   D + +I  +G G+F  VY+        + A KV+  + +   + +M E   L +  
Sbjct: 33  LNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCD 92
Query: 128 HRNLVRFISI-----------------AIDVA---------------------SALDYLH 149
           H N+V+ +                   A+D                        AL+YLH
Sbjct: 93  HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH 152
Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
            +    I+H D K  N+L   D     GD +LA F     N     +  ++R   +    
Sbjct: 153 DNK---IIHRDLKAGNILFTLD-----GDIKLADFGVSAKN-----TRTIQRRDSFIGTP 199
Query: 210 YDLGSEV-----------STNGDAYNYGILLLEMVTRRKP 238
           Y +  EV               D ++ GI L+EM     P
Sbjct: 200 YWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 194
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
             T  Y + +         + D +  G ++ ++V    P 
Sbjct: 195 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPF 234

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 62/220 (28%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC 127
           L   D + +I  +G G+F  VY+        + A KV+  + +   + +M E   L +  
Sbjct: 33  LNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCD 92
Query: 128 HRNLVRFISI-----------------AIDVA---------------------SALDYLH 149
           H N+V+ +                   A+D                        AL+YLH
Sbjct: 93  HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH 152
Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
            +    I+H D K  N+L   D     GD +LA F     N     +  ++R   +    
Sbjct: 153 DNK---IIHRDLKAGNILFTLD-----GDIKLADFGVSAKN-----TRXIQRRDSFIGTP 199
Query: 210 YDLGSEV-----------STNGDAYNYGILLLEMVTRRKP 238
           Y +  EV               D ++ GI L+EM     P
Sbjct: 200 YWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
           ++ SAL+YLH      I+H D KP N+LL+ D+   I DF  A+     S   Q+ +N  
Sbjct: 143 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK--QARANXF 197
Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
             T  Y + +         + D +  G ++ ++V    P 
Sbjct: 198 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPF 237

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 77/220 (35%), Gaps = 62/220 (28%)
Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC 127
           L   D + +I  +G G+F  VY+        + A KV+  + +   + +M E   L +  
Sbjct: 33  LNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCD 92
Query: 128 HRNLVRFISI-----------------AIDVA---------------------SALDYLH 149
           H N+V+ +                   A+D                        AL+YLH
Sbjct: 93  HPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH 152
Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
            +    I+H D K  N+L   D     GD +LA F     N     +  ++R   +    
Sbjct: 153 DNK---IIHRDLKAGNILFTLD-----GDIKLADFGVSAKN-----TRXIQRRDXFIGTP 199
Query: 210 YDLGSEV-----------STNGDAYNYGILLLEMVTRRKP 238
           Y +  EV               D ++ GI L+EM     P
Sbjct: 200 YWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 239

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 80/220 (36%), Gaps = 61/220 (27%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRN 130
           D + L  +IG G+   V        +  VAIK ++++ CQ +    + E +A+    H N
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74
Query: 131 LVRF---------------------------------------------ISIAIDVASAL 145
           +V +                                              +I  +V   L
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL 134
Query: 146 DYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY 205
           +YLH + Q   +H D K  N+LL  D    I DF ++ F     + T+   N VR+T  +
Sbjct: 135 EYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITR---NKVRKT--F 186
Query: 206 TALDYDLGSEVSTN-------GDAYNYGILLLEMVTRRKP 238
                 +  EV           D +++GI  +E+ T   P
Sbjct: 187 VGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAP 226

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ-SSSNG 198
           ++  ALDYL +   + I+H D KP N+LLD     HI DF +A     +   TQ ++  G
Sbjct: 123 ELVMALDYLQN---QRIIHRDMKPDNILLDEHGHVHITDFNIAAM---LPRETQITTMAG 176
Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
            +  +         G+  S   D ++ G+   E++  R+P
Sbjct: 177 TKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRP 216

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 80/220 (36%), Gaps = 61/220 (27%)
Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRN 130
           D + L  +IG G+   V        +  VAIK ++++ CQ +    + E +A+    H N
Sbjct: 10  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 69
Query: 131 LVRF---------------------------------------------ISIAIDVASAL 145
           +V +                                              +I  +V   L
Sbjct: 70  IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL 129
Query: 146 DYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY 205
           +YLH + Q   +H D K  N+LL  D    I DF ++ F     + T+   N VR+T  +
Sbjct: 130 EYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITR---NKVRKT--F 181
Query: 206 TALDYDLGSEVSTN-------GDAYNYGILLLEMVTRRKP 238
                 +  EV           D +++GI  +E+ T   P
Sbjct: 182 VGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAP 221

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           + SA++Y H H    I+H D KP N+LLD  L   I DF L+           +  N ++
Sbjct: 112 IISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNI--------MTDGNFLK 160
Query: 201 RTIG---YTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPID 240
            + G   Y A +   G        D ++ G++L  M+ RR P D
Sbjct: 161 TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD 204

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           + SA++Y H H    I+H D KP N+LLD  L   I DF L+           +  N ++
Sbjct: 122 IISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNI--------MTDGNFLK 170
Query: 201 RTIG---YTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPID 240
            + G   Y A +   G        D ++ G++L  M+ RR P D
Sbjct: 171 TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD 214

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           + SA++Y H H    I+H D KP N+LLD  L   I DF L+           +  N ++
Sbjct: 121 IISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNI--------MTDGNFLK 169
Query: 201 RTIG---YTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPID 240
            + G   Y A +   G        D ++ G++L  M+ RR P D
Sbjct: 170 TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFD 213

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Query: 110 QGASKSFM-AECKALKNICHRNLVRFISIAIDVASALDYLHHHCQEL-------ILHCDP 161
           +G+   F+ A   +   +CH        IA  +A  L YLH     L       I H D 
Sbjct: 106 KGSLSDFLKANVVSWNELCH--------IAETMARGLAYLHEDIPGLKDGHKPAISHRDI 157
Query: 162 KPSNVLLDNDLFAHIGDFELA-RFRQEVSNPTQSSSNGVRRTIGYTALD--YDLGSEVST 218
           K  NVLL N+L A I DF LA +F    S        G RR +    L+   +   +   
Sbjct: 158 KSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFL 217
Query: 219 NGDAYNYGILLLEMVTR----RKPID-FM--FEGDLNLH 250
             D Y  G++L E+ +R      P+D +M  FE ++  H
Sbjct: 218 RIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQH 256

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 135 ISIAIDVASALDYLHHHCQ----------ELILHCDPKPSNVLLDNDLFAHIGDFELARF 184
            +IA   AS  D LH   Q          +  +H D    NVLL N   A IGDF LAR 
Sbjct: 154 FAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLAR- 212
Query: 185 RQEVSNPTQSSSNG-VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
             ++ N +     G  R  + + A +       +   D ++YGILL E+ +
Sbjct: 213 --DIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	5e-44
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	8e-34
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	8e-32
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-30
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-27
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-27
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-27
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-26
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-26
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-26
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	4e-26
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-25
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	8e-24
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	9e-24
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-21
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-21
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	4e-21
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	4e-21
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	9e-18
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-17
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-17
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-16
3ork_A	311	Serine/threonine protein kinase; structural genomi	7e-16
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-14
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	8e-14
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	7e-13
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-12
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-12
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-12
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-12
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-12
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	5e-12
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	6e-12
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	9e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-11
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-11
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-11
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-11
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-11
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-11
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-11
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-11
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	4e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	5e-11
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	5e-11
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	5e-11
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	6e-11
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	8e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	8e-11
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	8e-11
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	8e-11
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-10
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-10
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-10
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-10
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-10
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-10
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	4e-10
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	4e-10
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	4e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	4e-10
3uqc_A	286	Probable conserved transmembrane protein; structur	5e-10
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	5e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	7e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	7e-10
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	7e-10
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-10
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	8e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	9e-10
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-09
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-09
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-09
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-09
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-09
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	3e-09
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	5e-09
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	5e-09
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	7e-09
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-08
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-08
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-08
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-08
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	7e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	8e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	8e-08
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	9e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-07
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-07
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-07
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-07
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-07
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-07
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	4e-07
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-07
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	5e-07
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	6e-07
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	7e-07
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	7e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	7e-07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	8e-07
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	9e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-06
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-06
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-06
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-06
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-06
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-06
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-06
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-06
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	5e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	6e-06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	6e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	6e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	7e-06
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	9e-06
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	1e-05
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-05
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-05
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-05
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	2e-05
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-05
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	5e-05
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-05
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	5e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	6e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-05
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	7e-05
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	7e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	8e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	9e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-04
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-04
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-04
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-04
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-04
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	4e-04
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	4e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	7e-04
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	8e-04
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	8e-04
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  153 bits (389), Expect = 5e-44
 Identities = 71/298 (23%), Positives = 117/298 (39%), Gaps = 70/298 (23%)

Query: 64  YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKA 122
              L  A+D F   N++G G F  VY+G    +  +VA+K L  +  QG    F  E + 
Sbjct: 22  LRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEM 80

Query: 123 LKNICHRNLVRFI-----------------------------------------SIAIDV 141
           +    HRNL+R                                            IA+  
Sbjct: 81  ISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGS 140

Query: 142 ASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS--SNGV 199
           A  L YLH HC   I+H D K +N+LLD +  A +GDF LA+         + +  +  V
Sbjct: 141 ARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL-----MDYKDTHVTTAV 195

Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF---EGDLNLHNFARMA 256
           R TIG+ A +Y    + S   D + YG++LLE++T ++  D      + D+ L ++ +  
Sbjct: 196 RGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGL 255

Query: 257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDR 314
              +      L  L D  +        + +            ++++   C+  S  +R
Sbjct: 256 LKEK-----KLEALVDVDLQGNYKDEEVEQ------------LIQVALLCTQSSPMER 296

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  126 bits (318), Expect = 8e-34
 Identities = 71/293 (24%), Positives = 108/293 (36%), Gaps = 65/293 (22%)

Query: 64  YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
              L +AT+ F    LIG G F  VY+GV   + A VA+K  + +     + F  E + L
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETL 89

Query: 124 KNICHRNLVRFI-----------------------------------------SIAIDVA 142
               H +LV  I                                          I I  A
Sbjct: 90  SFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAA 149

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT 202
             L YLH      I+H D K  N+LLD +    I DF +++   E+   T  S+  V+ T
Sbjct: 150 RGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTELDQ-THLSTV-VKGT 204

Query: 203 IGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF-EGDLNLHNFARMAFPNRV 261
           +GY   +Y +   ++   D Y++G++L E++  R  I        +NL  +A  +  N  
Sbjct: 205 LGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG- 263

Query: 262 MDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDR 314
             +  +V   D  +        LRK                   C   SS+DR
Sbjct: 264 -QLEQIV---DPNLADKIRPESLRK------------FGDTAVKCLALSSEDR 300

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  120 bits (303), Expect = 8e-32
 Identities = 56/241 (23%), Positives = 92/241 (38%), Gaps = 59/241 (24%)

Query: 64  YESLLKATDGF------PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS---- 113
           +  L   T+ F         N +G G F  VY+G   +N   VA+K L+      +    
Sbjct: 17  FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGY--VNNTTVAVKKLAAMVDITTEELK 74

Query: 114 KSFMAECKALKNICHRNLVRFI-------------------------------------- 135
           + F  E K +    H NLV  +                                      
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHM 134

Query: 136 --SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ 193
              IA   A+ +++LH +     +H D K +N+LLD    A I DF LAR  ++ +    
Sbjct: 135 RCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ--T 189

Query: 194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFA 253
             ++ +  T  Y A +   G E++   D Y++G++LLE++T    +D   E    L +  
Sbjct: 190 VMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-LLLDIK 247

Query: 254 R 254
            
Sbjct: 248 E 248

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  116 bits (293), Expect = 3e-30
 Identities = 54/233 (23%), Positives = 83/233 (35%), Gaps = 57/233 (24%)

Query: 64  YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
            E+L   +    L+ +   G F  V++         VA+K+  IQ +  S     E  +L
Sbjct: 16  TENLYFQSMPLQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQDK-QSWQNEYEVYSL 72

Query: 124 KNICHRNLVRFI----------------------------------------SIAIDVAS 143
             + H N+++FI                                         IA  +A 
Sbjct: 73  PGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMAR 132

Query: 144 ALDYLHHHCQEL-------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS 196
            L YLH     L       I H D K  NVLL N+L A I DF LA   +  +  +   +
Sbjct: 133 GLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFE--AGKSAGDT 190

Query: 197 NGVRRTIGYTA---LDY--DLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFE 244
           +G   T  Y A   L+   +   +     D Y  G++L E+ +R    D   +
Sbjct: 191 HGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVD 243

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  108 bits (272), Expect = 2e-27
 Identities = 51/205 (24%), Positives = 78/205 (38%), Gaps = 50/205 (24%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVR 133
           +   IG GSF  VY+G +      VA+K+L++        ++F  E   L+   H N++ 
Sbjct: 28  VGQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84

Query: 134 F-------------------------------------ISIAIDVASALDYLHHHCQELI 156
           F                                     I IA   A  +DYLH      I
Sbjct: 85  FMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---SI 141

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYDLG 213
           +H D K +N+ L  D    IGDF LA  +   S         +  +I + A   +     
Sbjct: 142 IHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGS--HQFEQLSGSILWMAPEVIRMQDS 199

Query: 214 SEVSTNGDAYNYGILLLEMVTRRKP 238
           +  S   D Y +GI+L E++T + P
Sbjct: 200 NPYSFQSDVYAFGIVLYELMTGQLP 224

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  108 bits (272), Expect = 3e-27
 Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 55/208 (26%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNLVR 133
           +   IG GSF  V++  +  + + VA+K+L  Q   A     F+ E   +K + H N+V 
Sbjct: 41  IKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98

Query: 134 F----------------------------------------ISIAIDVASALDYLHHHCQ 153
           F                                        +S+A DVA  ++YLH+   
Sbjct: 99  FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHN-RN 157

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDY 210
             I+H + K  N+L+D      + DF L+R +      T  SS     T  + A   L  
Sbjct: 158 PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS----TFLSSKSAAGTPEWMAPEVLR- 212

Query: 211 DLGSEVSTNGDAYNYGILLLEMVTRRKP 238
                 +   D Y++G++L E+ T ++P
Sbjct: 213 --DEPSNEKSDVYSFGVILWELATLQQP 238

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  106 bits (267), Expect = 5e-27
 Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 64/212 (30%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA--SKSFMAECKALKNICHRNLVR 133
            +  +       +++G +      + +KVL ++      S+ F  EC  L+   H N++ 
Sbjct: 14  FLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLP 71

Query: 134 FI-----------------------------------------SIAIDVASALDYLHHHC 152
            +                                           A+D+A  + +LH   
Sbjct: 72  VLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT-L 130

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA----- 207
           + LI        +V++D D+ A I   ++    Q         S G      + A     
Sbjct: 131 EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ---------SPGRMYAPAWVAPEALQ 181

Query: 208 -LDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
               D     +   D +++ +LL E+VTR  P
Sbjct: 182 KKPEDTNRRSA---DMWSFAVLLWELVTREVP 210

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  105 bits (265), Expect = 1e-26
 Identities = 47/214 (21%), Positives = 78/214 (36%), Gaps = 62/214 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ----GASKSFMAECKALKNICHRNL 131
           L  +IG+G F  VY+  +      VA+K              ++   E K    + H N+
Sbjct: 11  LEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNI 68

Query: 132 VRF------------------------------------ISIAIDVASALDYLHHHCQEL 155
           +                                      ++ A+ +A  ++YLH      
Sbjct: 69  IALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVP 128

Query: 156 ILHCDPKPSNVLLDNDLFAH--------IGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
           I+H D K SN+L+   +           I DF LAR   E    T+ S+ G      + A
Sbjct: 129 IIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR---EWHRTTKMSAAG---AYAWMA 182

Query: 208 ---LDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
              +   + S+ S   D ++YG+LL E++T   P
Sbjct: 183 PEVIRASMFSKGS---DVWSYGVLLWELLTGEVP 213

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  105 bits (264), Expect = 2e-26
 Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 68/239 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS-------KSFMAECKALKNICH 128
               IG G F  V++G    +++VVAIK L +             + F  E   + N+ H
Sbjct: 23  YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNH 82

Query: 129 RNLVRFI------------------------------------SIAIDVASALDYLHHHC 152
            N+V+                                       + +D+A  ++Y+  + 
Sbjct: 83  PNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYM-QNQ 141

Query: 153 QELILHCDPKPSNVLLDN-----DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
              I+H D +  N+ L +      + A + DF L++           S +G+     + A
Sbjct: 142 NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH-------SVSGLLGNFQWMA 194

Query: 208 ---LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD 263
              +  +     +   D Y++ ++L  ++T   P    F+     +++ ++ F N + +
Sbjct: 195 PETIGAE-EESYTEKADTYSFAMILYTILTGEGP----FDE----YSYGKIKFINMIRE 244

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  106 bits (266), Expect = 2e-26
 Identities = 52/236 (22%), Positives = 76/236 (32%), Gaps = 65/236 (27%)

Query: 64  YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECK-- 121
                   D   L+ LIG G + AVY+G   L+   VA+KV S       ++F+ E    
Sbjct: 5   ASEPSLDLDNLKLLELIGRGRYGAVYKGS--LDERPVAVKVFSFA---NRQNFINEKNIY 59

Query: 122 ALKNICHRNLVRFI-----------------------------------------SIAID 140
            +  + H N+ RFI                                          +A  
Sbjct: 60  RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHS 119

Query: 141 VASALDYLH------HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF----RQEVSN 190
           V   L YLH       H +  I H D    NVL+ ND    I DF L+      R     
Sbjct: 120 VTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPG 179

Query: 191 PTQSSSNGVRRTIGYTA-------LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI 239
              +++     TI Y A       ++           D Y  G++  E+  R   +
Sbjct: 180 EEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDL 235

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  105 bits (263), Expect = 4e-26
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 50/202 (24%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF- 134
           +  ++G G+F  V +  +      VAIK +  + +   K+F+ E + L  + H N+V+  
Sbjct: 12  VEEVVGRGAFGVVCKAKW--RAKDVAIKQIESESE--RKAFIVELRQLSRVNHPNIVKLY 67

Query: 135 -------------------------------------ISIAIDVASALDYLHHHCQELIL 157
                                                +S  +  +  + YLH    + ++
Sbjct: 68  GACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALI 127

Query: 158 HCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV 216
           H D KP N+LL        I DF  A   Q       +++ G   +  + A +   GS  
Sbjct: 128 HRDLKPPNLLLVAGGTVLKICDFGTACDIQT----HMTNNKG---SAAWMAPEVFEGSNY 180

Query: 217 STNGDAYNYGILLLEMVTRRKP 238
           S   D +++GI+L E++TRRKP
Sbjct: 181 SEKCDVFSWGIILWEVITRRKP 202

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 99.0 bits (247), Expect = 8e-24
 Identities = 45/213 (21%), Positives = 68/213 (31%), Gaps = 57/213 (26%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVR 133
           +  LIG G F  VY G +      VAI+++ I+   +   K+F  E  A +   H N+V 
Sbjct: 37  IGELIGKGRFGQVYHGRW---HGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVL 93

Query: 134 F--------------------------------------ISIAIDVASALDYLHHHCQEL 155
           F                                        IA ++   + YLH    + 
Sbjct: 94  FMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKG 150

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS-NGVRRTIGYTA------- 207
           ILH D K  NV  DN     I DF L      +    +          + + A       
Sbjct: 151 ILHKDLKSKNVFYDNGK-VVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQL 209

Query: 208 --LDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
                +     S + D +  G +  E+  R  P
Sbjct: 210 SPDTEEDKLPFSKHSDVFALGTIWYELHAREWP 242

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 98.6 bits (246), Expect = 9e-24
 Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 61/238 (25%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
              ++G G F    +        V+ +K L    +   ++F+ E K ++ + H N+++FI
Sbjct: 14  HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFI 73

Query: 136 --------------------------------------SIAIDVASALDYLHHHCQELIL 157
                                                 S A D+AS + YLH      I+
Sbjct: 74  GVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMN---II 130

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN----------PTQSSSNGVRRTIGYTA 207
           H D    N L+  +    + DF LAR   +             P +     V     + A
Sbjct: 131 HRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMA 190

Query: 208 ---LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF----EGDLNLHNFARMAFP 258
              ++     E     D +++GI+L E++ R            +  LN+  F     P
Sbjct: 191 PEMINGRSYDEKV---DVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCP 245

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 44/222 (19%), Positives = 76/222 (34%), Gaps = 58/222 (26%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECK--ALKNICHRNLVR 133
           L+  +G G +  V++G +      VA+K+ S +     KS+  E +      + H N++ 
Sbjct: 12  LLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILG 66

Query: 134 FI----------------------------------------SIAIDVASALDYLH---- 149
           FI                                         I + +AS L +LH    
Sbjct: 67  FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIF 126

Query: 150 -HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA- 207
               +  I H D K  N+L+  +    I D  LA    + +N     +N    T  Y A 
Sbjct: 127 GTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAP 186

Query: 208 --LD---YDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFE 244
             LD        +     D + +G++L E+  R      + +
Sbjct: 187 EVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVED 228

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 92.5 bits (230), Expect = 2e-21
 Identities = 45/220 (20%), Positives = 69/220 (31%), Gaps = 54/220 (24%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           ++  IG G +  V+ G +      VA+KV     + AS     E      + H N++ FI
Sbjct: 41  MVKQIGKGRYGEVWMGKW--RGEKVAVKVFFTTEE-ASWFRETEIYQTVLMRHENILGFI 97

Query: 136 ----------------------------------------SIAIDVASALDYLH-----H 150
                                                    +A    S L +LH      
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFST 157

Query: 151 HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA--- 207
             +  I H D K  N+L+  +    I D  LA      +N      N    T  Y     
Sbjct: 158 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEV 217

Query: 208 LDYDLGS---EVSTNGDAYNYGILLLEMVTRRKPIDFMFE 244
           LD  L     +     D Y++G++L E+  R      + E
Sbjct: 218 LDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEE 257

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 91.8 bits (228), Expect = 4e-21
 Identities = 45/216 (20%), Positives = 72/216 (33%), Gaps = 58/216 (26%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECK--ALKNICHRNLVR 133
           L   IG G F  V++G +      VA+K+ S + +   +S+  E +      + H N++ 
Sbjct: 46  LQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILG 100

Query: 134 FI----------------------------------------SIAIDVASALDYLH---- 149
           FI                                         +A+  AS L +LH    
Sbjct: 101 FIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIV 160

Query: 150 -HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA- 207
               +  I H D K  N+L+  +    I D  LA      ++    + N    T  Y A 
Sbjct: 161 GTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAP 220

Query: 208 --LDYDLGS---EVSTNGDAYNYGILLLEMVTRRKP 238
             LD  +     E     D Y  G++  E+  R   
Sbjct: 221 EVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI 256

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 81.5 bits (202), Expect = 9e-18
 Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 54/213 (25%)

Query: 76  LINLIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQCQG---ASKSFMAECKALKNICHRN 130
           +++ +G G    VY    D  LN   VAIK + I  +      K F  E      + H+N
Sbjct: 15  IVDKLGGGGMSTVYLAE-DTILNI-KVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN 72

Query: 131 LV-------------------------------------RFISIAIDVASALDYLHHHCQ 153
           +V                                       I+    +   + + H    
Sbjct: 73  IVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMR- 131

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             I+H D KP N+L+D++    I DF +A+    +S  + + +N V  T+ Y + +   G
Sbjct: 132 --IVHRDIKPQNILIDSNKTLKIFDFGIAKA---LSETSLTQTNHVLGTVQYFSPEQAKG 186

Query: 214 SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
                  D Y+ GI+L EM+    P    F G+
Sbjct: 187 EATDECTDIYSIGIVLYEMLVGEPP----FNGE 215

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 45/213 (21%), Positives = 73/213 (34%), Gaps = 54/213 (25%)

Query: 76  LINLIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRN 130
           L  L+G G    VY+   D    R +VA+K++S               E +    +   +
Sbjct: 38  LRRLVGRGGMGDVYEAE-DTVRER-IVALKLMSETLSSDPVFRTRMQREARTAGRLQEPH 95

Query: 131 LV-------------------------------------RFISIAIDVASALDYLHHHCQ 153
           +V                                     R ++I   + SALD  H    
Sbjct: 96  VVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAG- 154

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
               H D KP N+L+  D FA++ DF +A      ++   +       T+ Y A +    
Sbjct: 155 --ATHRDVKPENILVSADDFAYLVDFGIAS---ATTDEKLTQLGNTVGTLYYMAPERFSE 209

Query: 214 SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           S  +   D Y    +L E +T   P    ++GD
Sbjct: 210 SHATYRADIYALTCVLYECLTGSPP----YQGD 238

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 43/269 (15%), Positives = 80/269 (29%), Gaps = 72/269 (26%)

Query: 25  NQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDG-------FPLI 77
           +  +HS+ ++L       +     QP R++ R    +         +         F  +
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRL 62

Query: 78  NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNIC-HRNLVRF 134
           + +G GS+  V++     +  + A+K      +G       +AE  + + +  H   VR 
Sbjct: 63  SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRL 122

Query: 135 IS-------------------------------------IAIDVASALDYLHHHCQELIL 157
                                                     D   AL +LH      ++
Sbjct: 123 EQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLV 179

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN-GVRRTIGYTALDYDLGSEV 216
           H D KP+N+ L       +GDF L     E+          G      Y      +  E+
Sbjct: 180 HLDVKPANIFLGPRGRCKLGDFGLLV---ELGTAGAGEVQEG---DPRY------MAPEL 227

Query: 217 STNGDAYNY-------GILLLEMVTRRKP 238
                 Y         G+ +LE+    + 
Sbjct: 228 LQGS--YGTAADVFSLGLTILEVACNMEL 254

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 77.9 bits (192), Expect = 6e-16
 Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 56/236 (23%)

Query: 48  KQPLRLTLRNAIPKEYYESLLKATDGFP----------LINLIGVGSFDAVYQGVFDLNR 97
              L  TL    PK    ++   +  +           + + +G G +  VY+GV+    
Sbjct: 186 ADGLITTLHYPAPKRNKPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYS 245

Query: 98  AVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------------- 134
             VA+K L  +     + F+ E   +K I H NLV+                        
Sbjct: 246 LTVAVKTL-KEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLL 304

Query: 135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
                           + +A  ++SA++YL        +H +    N L+  +    + D
Sbjct: 305 DYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVAD 361

Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
           F L+R    ++  T ++  G +  I +TA +    ++ S   D + +G+LL E+ T
Sbjct: 362 FGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 414

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 49/218 (22%), Positives = 78/218 (35%), Gaps = 58/218 (26%)

Query: 76  LINLIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQCQG---ASKSFMAECKALKNICHRN 130
           L  ++G G    V+    D   +R  VA+KVL             F  E +    + H  
Sbjct: 16  LGEILGFGGMSEVHLAR-DLRDHR-DVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA 73

Query: 131 LV-----------------------------------------RFISIAIDVASALDYLH 149
           +V                                         R I +  D   AL++ H
Sbjct: 74  IVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSH 133

Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP-TQSSSNGVRRTIGYTAL 208
            +    I+H D KP+N+++       + DF +AR   +  N  TQ+++  V  T  Y + 
Sbjct: 134 QNG---IIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAA--VIGTAQYLSP 188

Query: 209 DYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           +   G  V    D Y+ G +L E++T   P    F GD
Sbjct: 189 EQARGDSVDARSDVYSLGCVLYEVLTGEPP----FTGD 222

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 56/242 (23%)

Query: 41  KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVV 100
              + P  +   + L  A+PK+ +   L   D   L   IG G+F  V+ G    +  +V
Sbjct: 86  LSTQQPLTKKSGVVLHRAVPKDKWV--LNHED-LVLGEQIGRGNFGEVFSGRLRADNTLV 142

Query: 101 AIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------------------- 134
           A+K             F+ E + LK   H N+VR                          
Sbjct: 143 AVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTF 202

Query: 135 -------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL 181
                        + +  D A+ ++YL   C    +H D    N L+       I DF +
Sbjct: 203 LRTEGARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGM 259

Query: 182 ARFRQEVSNPTQSSSNGVRRT-IGYTA---LDYDLGSEVSTNGDAYNYGILLLEMVTR-R 236
           +R   E ++   ++S G+R+  + +TA   L+Y      S+  D +++GILL E  +   
Sbjct: 260 SR---EEADGVYAASGGLRQVPVKWTAPEALNY---GRYSSESDVWSFGILLWETFSLGA 313

Query: 237 KP 238
            P
Sbjct: 314 SP 315

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 74.1 bits (182), Expect = 1e-14
 Identities = 38/223 (17%), Positives = 65/223 (29%), Gaps = 71/223 (31%)

Query: 76  LINLIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLV 132
           +   I  G    +Y  + D  +N   V +K L       A    MAE + L  + H ++V
Sbjct: 84  VKGCIAHGGLGWIYLAL-DRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIV 142

Query: 133 R----------------FI------------------------SIAIDVASALDYLHHHC 152
           +                +I                        +  +++  AL YLH   
Sbjct: 143 QIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIG 202

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              +++ D KP N++L  +    + D               +S   +  T G+ A     
Sbjct: 203 ---LVYNDLKPENIMLTEE-QLKLIDLGAVS--------RINSFGYLYGTPGFQA----- 245

Query: 213 GSEVSTNG-----DAYNYGILLLEMVTRRKPIDFMFEGDLNLH 250
             E+   G     D Y  G  L  +            G     
Sbjct: 246 -PEIVRTGPTVATDIYTVGRTLAALTLDLPT----RNGRYVDG 283

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 58/274 (21%), Positives = 99/274 (36%), Gaps = 70/274 (25%)

Query: 11  YRLESHRFLHDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKA 70
           Y     +F    S+ Q        L  Y  K   G     L   L    P    ++   A
Sbjct: 215 YITSRTQF---NSLQQ--------LVAYYSKHADG-----LCHRLTTVCPTSKPQTQGLA 258

Query: 71  TDG-------FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL 123
            D          L   +G G F  V+ G ++    V AIK L      + ++F+ E + +
Sbjct: 259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRV-AIKTL-KPGTMSPEAFLQEAQVM 316

Query: 124 KNICHRNLVRF--------------------------------------ISIAIDVASAL 145
           K + H  LV+                                       + +A  +AS +
Sbjct: 317 KKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGM 376

Query: 146 DYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY 205
            Y+        +H D + +N+L+  +L   + DF LAR    + +   ++  G +  I +
Sbjct: 377 AYVERMN---YVHRDLRAANILVGENLVCKVADFGLAR---LIEDNEYTARQGAKFPIKW 430

Query: 206 TALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKP 238
           TA +  L    +   D +++GILL E+ T+ R P
Sbjct: 431 TAPEAALYGRFTIKSDVWSFGILLTELTTKGRVP 464

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 47/202 (23%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF- 134
           L   +G G F  V+ G ++     VAIK L      + ++F+ E + +K + H  LV+  
Sbjct: 188 LEVKLGQGCFGEVWMGTWN-GTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLRHEKLVQLY 245

Query: 135 -------------------------------------ISIAIDVASALDYLHHHCQELIL 157
                                                + +A  +AS + Y+        +
Sbjct: 246 AVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YV 302

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D + +N+L+  +L   + DF LAR    + +   ++  G +  I +TA +  L    +
Sbjct: 303 HRDLRAANILVGENLVCKVADFGLAR---LIEDNEYTARQGAKFPIKWTAPEAALYGRFT 359

Query: 218 TNGDAYNYGILLLEMVTR-RKP 238
              D +++GILL E+ T+ R P
Sbjct: 360 IKSDVWSFGILLTELTTKGRVP 381

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 71.3 bits (175), Expect = 8e-14
 Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 53/205 (25%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF- 134
           L   +G G F  V+   ++     VA+K +      + ++F+AE   +K + H  LV+  
Sbjct: 192 LEKKLGAGQFGEVWMATYN-KHTKVAVKTM-KPGSMSVEAFLAEANVMKTLQHDKLVKLH 249

Query: 135 -------------------------------------ISIAIDVASALDYLHHHCQELIL 157
                                                I  +  +A  + ++        +
Sbjct: 250 AVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YI 306

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYDLGS 214
           H D + +N+L+   L   I DF LAR    + +   ++  G +  I +TA   +++    
Sbjct: 307 HRDLRAANILVSASLVCKIADFGLARV---IEDNEYTAREGAKFPIKWTAPEAINF---G 360

Query: 215 EVSTNGDAYNYGILLLEMVTR-RKP 238
             +   D +++GILL+E+VT  R P
Sbjct: 361 SFTIKSDVWSFGILLMEIVTYGRIP 385

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 69/226 (30%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK---SFMAECKALKNICH 128
             F +   IG G F  VY+    L+   VA+K + I     +K     + E   LK + H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 129 RNLVRFI-----------------------------------------SIAIDVASALDY 147
            N++++                                             + + SAL++
Sbjct: 92  PNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEH 151

Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
           +H      ++H D KP+NV +       +GD  L R      +   ++++ +  T  Y +
Sbjct: 152 MHSR---RVMHRDIKPANVFITATGVVKLGDLGLGR----FFSSKTTAAHSLVGTPYYMS 204

Query: 208 LDYDLGSEVSTNGDAYNY-------GILLLEMVTRRKPIDFMFEGD 246
                  E   + + YN+       G LL EM   + P    F GD
Sbjct: 205 ------PER-IHENGYNFKSDIWSLGCLLYEMAALQSP----FYGD 239

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 48/209 (22%), Positives = 68/209 (32%), Gaps = 62/209 (29%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNLVRFI- 135
            IG GSF  VY+G+       VA   L  +    S  + F  E + LK + H N+VRF  
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 136 ----------------------------------------SIAIDVASALDYLHHHCQEL 155
                                                   S    +   L +LH      
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPP 151

Query: 156 ILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
           I+H D K  N+ +        IGD  LA  ++       S +  V  T  + A       
Sbjct: 152 IIHRDLKCDNIFITGPTGSVKIGDLGLATLKR------ASFAKAVIGTPEFMA------P 199

Query: 215 EVSTNG-----DAYNYGILLLEMVTRRKP 238
           E+         D Y +G+ +LEM T   P
Sbjct: 200 EMYEEKYDESVDVYAFGMCMLEMATSEYP 228

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 43/229 (18%), Positives = 72/229 (31%), Gaps = 69/229 (30%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHR 129
           + + ++  IG GS+    +     +  ++  K L       +  +  ++E   L+ + H 
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 130 NLVRFI-------------------------------------------SIAIDVASALD 146
           N+VR+                                             +   +  AL 
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 125

Query: 147 YLH--HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
             H        +LH D KP+NV LD      +GDF LAR     ++  ++   G   T  
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFV-G---TPY 181

Query: 205 YTALDYDLGSEVSTNGDAYNY-------GILLLEMVTRRKPIDFMFEGD 246
           Y +       E   N  +YN        G LL E+     P    F   
Sbjct: 182 YMS------PEQ-MNRMSYNEKSDIWSLGCLLYELCALMPP----FTAF 219

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 53/205 (25%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF- 134
           L+  +G G F  V+ G ++     VA+K L  Q   +  +F+AE   +K + H+ LVR  
Sbjct: 17  LVERLGAGQFGEVWMGYYN-GHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY 74

Query: 135 -------------------------------------ISIAIDVASALDYLHHHCQELIL 157
                                                + +A  +A  + ++        +
Sbjct: 75  AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YI 131

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYDLGS 214
           H D + +N+L+ + L   I DF LAR    + +   ++  G +  I +TA   ++Y    
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAKFPIKWTAPEAINY---G 185

Query: 215 EVSTNGDAYNYGILLLEMVTR-RKP 238
             +   D +++GILL E+VT  R P
Sbjct: 186 TFTIKSDVWSFGILLTEIVTHGRIP 210

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 42/223 (18%), Positives = 68/223 (30%), Gaps = 66/223 (29%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHR 129
           + +  +  IG GSF          +     IK ++I    +   +    E   L N+ H 
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 130 NLVRFI---------------------------------------SIAIDVASALDYLHH 150
           N+V++                                           + +  AL ++H 
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD 143

Query: 151 HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                ILH D K  N+ L  D    +GDF +AR         ++   G   T  Y +   
Sbjct: 144 R---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACI-G---TPYYLS--- 193

Query: 211 DLGSEVSTNGDAYNY-------GILLLEMVTRRKPIDFMFEGD 246
               E+      YN        G +L E+ T +      FE  
Sbjct: 194 ---PEI-CENKPYNNKSDIWALGCVLYELCTLKHA----FEAG 228

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 46/213 (21%), Positives = 71/213 (33%), Gaps = 60/213 (28%)

Query: 76  LINLIGVGSFDAVYQGVF---DLNRAVVAIKVL---SIQCQGASKSFMAECKALKNICHR 129
           L+  +G GSF  V +G +         VA+K L    +    A   F+ E  A+ ++ HR
Sbjct: 22  LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHR 81

Query: 130 NLVR-------------------------------------FISIAIDVASALDYLHHHC 152
           NL+R                                         A+ VA  + YL    
Sbjct: 82  NLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR 141

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
               +H D    N+LL       IGDF L R   +  +      +  +    + A     
Sbjct: 142 ---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHR-KVPFAWCAP---- 193

Query: 213 GSEV------STNGDAYNYGILLLEMVTR-RKP 238
             E       S   D + +G+ L EM T  ++P
Sbjct: 194 --ESLKTRTFSHASDTWMFGVTLWEMFTYGQEP 224

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 65.5 bits (159), Expect = 5e-12
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 25/122 (20%)

Query: 135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
           + + + V   L  LHH+    ++H   +P +++LD      +  FE        +     
Sbjct: 214 LQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAV---- 266

Query: 195 SSNGVRRTIGYTALDY----------DLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFE 244
                    G+   +              + ++   D +  G+ +  +     P      
Sbjct: 267 ----SPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLP----NT 318

Query: 245 GD 246
            D
Sbjct: 319 DD 320

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 56/214 (26%), Positives = 86/214 (40%), Gaps = 50/214 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRN 130
           + +  ++ +G G++  VY+G   L   +VA+K + ++ + GA  + + E   LK++ H N
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN 61

Query: 131 LVRFISIAIDVAS-------------------------------------ALDYLHHHCQ 153
           +V    I     S                                      L Y H    
Sbjct: 62  IVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQK- 120

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             +LH D KP N+L++      + DF LAR     S PT++  N V  T+ Y   D  LG
Sbjct: 121 --VLHRDLKPQNLLINERGELKLADFGLARA---KSIPTKTYDNEV-VTLWYRPPDILLG 174

Query: 214 SEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           S   ST  D +  G +  EM T R P+   F G 
Sbjct: 175 STDYSTQIDMWGVGCIFYEMATGR-PL---FPGS 204

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 59/209 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNLVR 133
           + + +G G +  VY+GV+      VA+K L    +     + F+ E   +K I H NLV+
Sbjct: 17  MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK---EDTMEVEEFLKEAAVMKEIKHPNLVQ 73

Query: 134 F---------------------------------------ISIAIDVASALDYL-HHHCQ 153
                                                   + +A  ++SA++YL   +  
Sbjct: 74  LLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF- 132

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDY 210
              +H D    N L+  +    + DF L+R    ++  T ++  G +  I +TA   L Y
Sbjct: 133 ---IHRDLAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLAY 186

Query: 211 DLGSEVSTNGDAYNYGILLLEMVTR-RKP 238
              ++ S   D + +G+LL E+ T    P
Sbjct: 187 ---NKFSIKSDVWAFGVLLWEIATYGMSP 212

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 42/208 (20%), Positives = 79/208 (37%), Gaps = 59/208 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNLVR 133
            +  IG G F  V+ G + LN+  VAIK +    +GA   + F+ E + +  + H  LV+
Sbjct: 12  FVQEIGSGQFGLVHLGYW-LNKDKVAIKTIR---EGAMSEEDFIEEAEVMMKLSHPKLVQ 67

Query: 134 F--------------------------------------ISIAIDVASALDYL-HHHCQE 154
                                                  + + +DV   + YL       
Sbjct: 68  LYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV-- 125

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYD 211
             +H D    N L+  +    + DF + RF   V +   +SS G +  + + +     + 
Sbjct: 126 --IHRDLAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSF- 179

Query: 212 LGSEVSTNGDAYNYGILLLEMVTR-RKP 238
             S  S+  D +++G+L+ E+ +  + P
Sbjct: 180 --SRYSSKSDVWSFGVLMWEVFSEGKIP 205

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 63/208 (30%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNICHRNLVR- 133
           L+  IG G F  V  G +      VA+K +      A+ ++F+AE   +  + H NLV+ 
Sbjct: 197 LLQTIGKGEFGDVMLGDY--RGNKVAVKCIK---NDATAQAFLAEASVMTQLRHSNLVQL 251

Query: 134 ---------------------------------------FISIAIDVASALDYLHHHCQE 154
                                                   +  ++DV  A++YL  +   
Sbjct: 252 LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN-- 309

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYD 211
             +H D    NVL+  D  A + DF L +          S+ +  +  + +TA   L   
Sbjct: 310 -FVHRDLAARNVLVSEDNVAKVSDFGLTKE-------ASSTQDTGKLPVKWTAPEALRE- 360

Query: 212 LGSEVSTNGDAYNYGILLLEMVTR-RKP 238
              + ST  D +++GILL E+ +  R P
Sbjct: 361 --KKFSTKSDVWSFGILLWEIYSFGRVP 386

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 42/207 (20%), Positives = 76/207 (36%), Gaps = 59/207 (28%)

Query: 80  IGVGSFDAVYQGVF--DLNRAVVAIKVLSIQCQGASKS-FMAECKALKNICHRNLVR--- 133
           +G G+F +V QGV+     +  VAIKVL    + A     M E + +  + +  +VR   
Sbjct: 18  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 77

Query: 134 ----------------------------------FISIAIDVASALDYL-HHHCQELILH 158
                                                +   V+  + YL   +     +H
Sbjct: 78  VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF----VH 133

Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-- 216
            D    NVLL N  +A I DF L++      +   ++ +  +  + + A       E   
Sbjct: 134 RDLAARNVLLVNRHYAKISDFGLSKALGA-DDSYYTARSAGKWPLKWYAP------ECIN 186

Query: 217 ----STNGDAYNYGILLLEMVTR-RKP 238
               S+  D ++YG+ + E ++  +KP
Sbjct: 187 FRKFSSRSDVWSYGVTMWEALSYGQKP 213

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 63/221 (28%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRN 130
           D + L  +IG G+   V        +  VAIK +++ +CQ +    + E +A+    H N
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 131 LVRFI------------------------------------------SIAI---DVASAL 145
           +V +                                           +IA    +V   L
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGL 134

Query: 146 DYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT-IG 204
           +YLH + Q   +H D K  N+LL  D    I DF ++ F   ++     + N VR+T +G
Sbjct: 135 EYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAF---LATGGDITRNKVRKTFVG 188

Query: 205 YTALDYDLGSEVSTNGDAYNY-------GILLLEMVTRRKP 238
            T     +  EV      Y++       GI  +E+ T   P
Sbjct: 189 -TP--CWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAP 226

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 45/215 (20%), Positives = 80/215 (37%), Gaps = 50/215 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
             +  +  IG G++  V++        +VA+K   L    +G   S + E   LK + H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 130 NLVRFISIAIDVAS-------------------------------------ALDYLHHHC 152
           N+VR   +                                            L + H   
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN 121

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              +LH D KP N+L++ +    + +F LAR       P +  S  V  T+ Y   D   
Sbjct: 122 ---VLHRDLKPQNLLINRNGELKLANFGLARA---FGIPVRCYSAEV-VTLWYRPPDVLF 174

Query: 213 GSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           G+++ ST+ D ++ G +  E+    +P+   F G+
Sbjct: 175 GAKLYSTSIDMWSAGCIFAELANAGRPL---FPGN 206

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 59/208 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNLVR 133
           L+  +G G F  V  G +   +  VA+K++    +G+     F  E + +  + H  LV+
Sbjct: 12  LLKELGSGQFGVVKLGKWK-GQYDVAVKMIK---EGSMSEDEFFQEAQTMMKLSHPKLVK 67

Query: 134 F--------------------------------------ISIAIDVASALDYL-HHHCQE 154
           F                                      + +  DV   + +L  H    
Sbjct: 68  FYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF-- 125

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYD 211
             +H D    N L+D DL   + DF + R+   V +    SS G +  + ++A     Y 
Sbjct: 126 --IHRDLAARNCLVDRDLCVKVSDFGMTRY---VLDDQYVSSVGTKFPVKWSAPEVFHY- 179

Query: 212 LGSEVSTNGDAYNYGILLLEMVTR-RKP 238
              + S+  D + +GIL+ E+ +  + P
Sbjct: 180 --FKYSSKSDVWAFGILMWEVFSLGKMP 205

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 42/223 (18%), Positives = 78/223 (34%), Gaps = 62/223 (27%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQCQGASKS 115
           P  + E  LK       I+ +G G+F +V    +D       A+VA+K L        + 
Sbjct: 17  PTIFEERHLK------YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRD 70

Query: 116 FMAECKALKNICHRNLVRF----------------------------------------I 135
           F  E + LK +    +V++                                        +
Sbjct: 71  FQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLL 130

Query: 136 SIAIDVASALDYLH-HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
             +  +   ++YL    C    +H D    N+L++++    I DF LA+      +    
Sbjct: 131 LYSSQICKGMEYLGSRRC----VHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV 186

Query: 195 SSNGVRRTIGYTA---LDYDLGSEVSTNGDAYNYGILLLEMVT 234
              G +  I + A   L     +  S   D +++G++L E+ T
Sbjct: 187 REPG-QSPIFWYAPESLSD---NIFSRQSDVWSFGVVLYELFT 225

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 62/223 (27%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    +D        VVA+K L    +   + 
Sbjct: 4   PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 57

Query: 116 FMAECKALKNICHRNLVRF----------------------------------------I 135
           F  E + LK++ H N+V++                                        +
Sbjct: 58  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 117

Query: 136 SIAIDVASALDYLH-HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
                +   ++YL         +H D    N+L++N+    IGDF L +   +     + 
Sbjct: 118 QYTSQICKGMEYLGTKRY----IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKV 173

Query: 195 SSNGVRRTIGYTA---LDYDLGSEVSTNGDAYNYGILLLEMVT 234
              G    I + A   L     S+ S   D +++G++L E+ T
Sbjct: 174 KEPG-ESPIFWYAPESLTE---SKFSVASDVWSFGVVLYELFT 212

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 44/208 (21%), Positives = 81/208 (38%), Gaps = 59/208 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNLVR 133
            +  +G G F  V  G +   +  VAIK++    +G+     F+ E K + N+ H  LV+
Sbjct: 28  FLKELGTGQFGVVKYGKWR-GQYDVAIKMIK---EGSMSEDEFIEEAKVMMNLSHEKLVQ 83

Query: 134 F--------------------------------------ISIAIDVASALDYL-HHHCQE 154
                                                  + +  DV  A++YL       
Sbjct: 84  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQF-- 141

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDYD 211
             LH D    N L+++     + DF L+R+   V +   +SS G +  + ++    L Y 
Sbjct: 142 --LHRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLMY- 195

Query: 212 LGSEVSTNGDAYNYGILLLEMVTR-RKP 238
             S+ S+  D + +G+L+ E+ +  + P
Sbjct: 196 --SKFSSKSDIWAFGVLMWEIYSLGKMP 221

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 47/142 (33%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNIC-HRN 130
           F  +  IG G F +V++ V  L+  + AIK       G+   ++ + E  A   +  H +
Sbjct: 13  FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSH 72

Query: 131 LVRFIS-----------------------------------------IAIDVASALDYLH 149
           +VR+ S                                         + + V   L Y+H
Sbjct: 73  VVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH 132

Query: 150 HHCQELILHCDPKPSNVLLDND 171
                 ++H D KPSN+ +   
Sbjct: 133 SM---SLVHMDIKPSNIFISRT 151

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 33/184 (17%), Positives = 55/184 (29%), Gaps = 45/184 (24%)

Query: 41  KKRRGPSKQPLRLTLRNAIPKEYYESLLKATDG--FPLINLIGVGSFDAVYQGVFDLNRA 98
            K   P              KE  E L+       +     +G G F   ++      + 
Sbjct: 8   GKAGVPGVAAPGAPAAAPPAKEIPEVLVDPRSRRRYVRGRFLGKGGFAKCFEISDADTKE 67

Query: 99  VVAIKVLS---IQCQGASKSFMAECKALKNICHRNLVRFISIAID--------------- 140
           V A K++    +      +    E    +++ H+++V F     D               
Sbjct: 68  VFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRS 127

Query: 141 ----------------------VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD 178
                                 +     YLH +    ++H D K  N+ L+ DL   IGD
Sbjct: 128 LLELHKRRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGD 184

Query: 179 FELA 182
           F LA
Sbjct: 185 FGLA 188

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 62/213 (29%)

Query: 76  LINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQCQGASKS-FMAECKALKNICHRN 130
            I ++G G+F  VY+G++       +  VAIK L       +    + E   + ++ + +
Sbjct: 19  KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH 78

Query: 131 LVRFI-------------------------------------SIAIDVASALDYL-HHHC 152
           + R +                                     +  + +A  ++YL     
Sbjct: 79  VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
               +H D    NVL+       I DF LA+          +   G +  I + AL    
Sbjct: 139 ----VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAE--GGKVPIKWMAL---- 188

Query: 213 GSEV------STNGDAYNYGILLLEMVTR-RKP 238
             E       +   D ++YG+ + E++T   KP
Sbjct: 189 --ESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 62/209 (29%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFISIA 138
           ++G G++  VY G    N+  +AIK +  +    S+    E    K++ H+N+V+++   
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 88

Query: 139 ID----------------------------------------VASALDYLHHHCQELILH 158
            +                                        +   L YLH +    I+H
Sbjct: 89  SENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVH 145

Query: 159 CDPKPSNVLLDNDL-FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV- 216
            D K  NVL++       I DF  ++            +     T+ Y A       E+ 
Sbjct: 146 RDIKGDNVLINTYSGVLKISDFGTSK----RLAGINPCTETFTGTLQYMA------PEII 195

Query: 217 STNGDAYNY-------GILLLEMVTRRKP 238
                 Y         G  ++EM T + P
Sbjct: 196 DKGPRGYGKAADIWSLGCTIIEMATGKPP 224

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 62/214 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAV----VAIKVLSIQC-QGASKSFMAECKALKNICHRN 130
              +IG G F  VY+G+   +       VAIK L     +     F+ E   +    H N
Sbjct: 48  RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN 107

Query: 131 LVRF--------------------------------------ISIAIDVASALDYL-HHH 151
           ++R                                       + +   +A+ + YL + +
Sbjct: 108 IIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN 167

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
                +H D    N+L++++L   + DF L+R  ++    T ++S G +  I +TA    
Sbjct: 168 Y----VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGG-KIPIRWTAP--- 219

Query: 212 LGSEV------STNGDAYNYGILLLEMVTR-RKP 238
              E       ++  D +++GI++ E++T   +P
Sbjct: 220 ---EAISYRKFTSASDVWSFGIVMWEVMTYGERP 250

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 59/207 (28%)

Query: 80  IGVGSFDAVYQGVFDLNRAV--VAIKVLSIQC--QGASKSFMAECKALKNICHRNLVR-- 133
           +G G+F  V +G + + + V  VA+K+L  +          +AE   ++ + +  +VR  
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84

Query: 134 ----------------------------------FISIAIDVASALDYL-HHHCQELILH 158
                                              I +   V+  + YL   +     +H
Sbjct: 85  GICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNF----VH 140

Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-- 216
            D    NVLL    +A I DF L++  +   N  ++ ++G +  + + A       E   
Sbjct: 141 RDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHG-KWPVKWYAP------ECIN 193

Query: 217 ----STNGDAYNYGILLLEMVTR-RKP 238
               S+  D +++G+L+ E  +  +KP
Sbjct: 194 YYKFSSKSDVWSFGVLMWEAFSYGQKP 220

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 56/220 (25%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQCQGASKS 115
           P ++ E  LK       +  +G G+F +V    +D        VVA+K L    +   + 
Sbjct: 35  PTQFEERHLK------FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRD 88

Query: 116 FMAECKALKNICHRNLVRF----------------------------------------I 135
           F  E + LK++ H N+V++                                        +
Sbjct: 89  FEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL 148

Query: 136 SIAIDVASALDYLH-HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
                +   ++YL         +H D    N+L++N+    IGDF L +   +     + 
Sbjct: 149 QYTSQICKGMEYLGTKRY----IHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKV 204

Query: 195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
              G    I + A +    S+ S   D +++G++L E+ T
Sbjct: 205 KEPG-ESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 243

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 57/254 (22%), Positives = 87/254 (34%), Gaps = 84/254 (33%)

Query: 60  PKEY--YESLLKA---TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK 114
           P+EY  YES +      D + L+  +G G +  V++ +   N   V +K+L        K
Sbjct: 19  PREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL--------K 70

Query: 115 SFMA-----ECKALKNIC-HRNLVRFISIAIDVAS------------------------- 143
                    E K L+N+    N++    I  D  S                         
Sbjct: 71  PVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDY 130

Query: 144 -----------ALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELARFRQEVS 189
                      ALDY H      I+H D KP NV++D+    L   + D+ LA F     
Sbjct: 131 DIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLR--LIDWGLAEFYHPGQ 185

Query: 190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGI-------LLLEMVTRRKPIDFM 242
                            A  Y  G E+  +   Y+Y +       +L  M+ R++P    
Sbjct: 186 EYN-----------VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF--- 231

Query: 243 FEGDLNLHNFARMA 256
           F G  N     R+A
Sbjct: 232 FHGHDNYDQLVRIA 245

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 80/232 (34%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK-SFMAECKALKNICHRN 130
             F  I  +G G F  V++    ++    AIK + +  +  ++   M E KAL  + H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 131 LVRFIS----------------------------------------------------IA 138
           +VR+ +                                                    I 
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF 124

Query: 139 IDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
           + +A A+++LH      ++H D KPSN+    D    +GDF L                 
Sbjct: 125 LQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVT--------AMDQDEE 173

Query: 199 VRRTIGYTALDYDLGSEVST---------NGDAYNY-------GILLLEMVT 234
            +  +           +V T         +G++Y++       G++L E++ 
Sbjct: 174 EQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY 225

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 43/149 (28%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVL---SIQCQGASKSFMAECKALKNICHRN 130
           +     +G G F   ++      + V A K++    +      +    E    +++ H++
Sbjct: 17  YVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH 76

Query: 131 LVRFISIAID-------------------------------------VASALDYLHHHCQ 153
           +V F     D                                     +     YLH +  
Sbjct: 77  VVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNR- 135

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELA 182
             ++H D K  N+ L+ DL   IGDF LA
Sbjct: 136 --VIHRDLKLGNLFLNEDLEVKIGDFGLA 162

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 59/212 (27%)

Query: 76  LINLIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQCQGASKS-FMAECKALKNICHRNL 131
           +  +IG G    V  G           VAIK L        +  F++E   +    H N+
Sbjct: 53  IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNI 112

Query: 132 VRF--------------------------------------ISIAIDVASALDYLHHHCQ 153
           +R                                       + +   V + + YL     
Sbjct: 113 IRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLG- 171

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
              +H D    NVL+D++L   + DF L+R  ++  +   +++ G +  I +TA      
Sbjct: 172 --YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGG-KIPIRWTAP----- 223

Query: 214 SEV------STNGDAYNYGILLLEMVTR-RKP 238
            E       S+  D +++G+++ E++    +P
Sbjct: 224 -EAIAFRTFSSASDVWSFGVVMWEVLAYGERP 254

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 42/237 (17%), Positives = 84/237 (35%), Gaps = 56/237 (23%)

Query: 54  TLRNAIPKEYYESLLKATDGFP---------LINLIGVGSFDAVYQGVF---DLNRAVVA 101
            LR  +    +E   +    F          +  ++G G F  V  G           VA
Sbjct: 18  GLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVA 77

Query: 102 IKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-------------------------- 134
           IK L +   +   + F+ E   +    H N++R                           
Sbjct: 78  IKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL 137

Query: 135 ------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELA 182
                       + +   +AS + YL        +H D    N+L++++L   + DF L 
Sbjct: 138 RKHDAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLG 194

Query: 183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKP 238
           R  ++      ++  G +  I +T+ +     + ++  D ++YGI+L E+++   +P
Sbjct: 195 RVLEDDPEAAYTTRGG-KIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERP 250

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 62.3 bits (151), Expect = 8e-11
 Identities = 40/201 (19%), Positives = 78/201 (38%), Gaps = 47/201 (23%)

Query: 80  IGVGSFDAVYQGVFDLNRAV--VAIKVLSIQCQGASKS-FMAECKALKNICHRNLVR--- 133
           +G G+F +V QGV+ + +    VAIKVL    + A     M E + +  + +  +VR   
Sbjct: 344 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 403

Query: 134 ----------------------------------FISIAIDVASALDYL-HHHCQELILH 158
                                                +   V+  + YL   +     +H
Sbjct: 404 VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF----VH 459

Query: 159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST 218
            +    NVLL N  +A I DF L++      +   ++ +  +  + + A +     + S+
Sbjct: 460 RNLAARNVLLVNRHYAKISDFGLSKALGA-DDSYYTARSAGKWPLKWYAPECINFRKFSS 518

Query: 219 NGDAYNYGILLLEMVTR-RKP 238
             D ++YG+ + E ++  +KP
Sbjct: 519 RSDVWSYGVTMWEALSYGQKP 539

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 51/205 (24%)

Query: 76  LINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQCQGASKS-FMAECKALKNICHRN 130
            I  +G G F  V    +D         VA+K L  +  G   +    E + L+N+ H N
Sbjct: 25  RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN 84

Query: 131 LVRF----------------------------------------ISIAIDVASALDYLH- 149
           +V++                                        +  A+ +   +DYL  
Sbjct: 85  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS 144

Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
                  +H D    NVL++++    IGDF L +  +          +     + + A +
Sbjct: 145 RQY----VHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDR-DSPVFWYAPE 199

Query: 210 YDLGSEVSTNGDAYNYGILLLEMVT 234
             + S+     D +++G+ L E++T
Sbjct: 200 CLMQSKFYIASDVWSFGVTLHELLT 224

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 61.3 bits (149), Expect = 8e-11
 Identities = 42/261 (16%), Positives = 75/261 (28%), Gaps = 65/261 (24%)

Query: 24  MNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVG 83
            + +   +  + +          ++  L       +  EY E +   T        +G G
Sbjct: 14  ASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQ----PRVGRG 69

Query: 84  SFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI-------- 135
           SF  V++          A+K + ++          E  A   +    +V           
Sbjct: 70  SFGEVHRMKDKQTGFQCAVKKVRLEVFRVE-----ELVACAGLSSPRIVPLYGAVREGPW 124

Query: 136 -----------SIA------------------IDVASALDYLHHHCQELILHCDPKPSNV 166
                      S+                         L+YLH      ILH D K  NV
Sbjct: 125 VNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNV 181

Query: 167 LLDND-LFAHIGDFELA-RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYN 224
           LL +D   A + DF  A   + +    +  + + +  T  + A       EV   G   +
Sbjct: 182 LLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMA------PEV-VMGKPCD 234

Query: 225 Y-------GILLLEMVTRRKP 238
                     ++L M+    P
Sbjct: 235 AKVDIWSSCCMMLHMLNGCHP 255

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 48/206 (23%)

Query: 76  LINLIGVGSFDAVYQGVFDL----NRAVVAIKVLSIQCQGASKS-FMAECKALKNICHRN 130
            + ++G G F  V++GV+       +  V IKV+  +    S         A+ ++ H +
Sbjct: 17  KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAH 76

Query: 131 LVR-------------------------------------FISIAIDVASALDYLHHHCQ 153
           +VR                                      ++  + +A  + YL  H  
Sbjct: 77  IVRLLGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHG- 135

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             ++H +    NVLL +     + DF +A       +  Q   +  +  I + AL+    
Sbjct: 136 --MVHRNLAARNVLLKSPSQVQVADFGVADLLPP--DDKQLLYSEAKTPIKWMALESIHF 191

Query: 214 SEVSTNGDAYNYGILLLEMVTR-RKP 238
            + +   D ++YG+ + E++T   +P
Sbjct: 192 GKYTHQSDVWSYGVTVWELMTFGAEP 217

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 22/133 (16%)

Query: 136 SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS 195
            +   +      L       ++H    P N+ +  D    +GD                 
Sbjct: 198 ILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSALW------------ 242

Query: 196 SNGVRRTIGYTALDY-------DLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN 248
             G R       + Y          +  +   +A+  G+ +  +     P   +  G   
Sbjct: 243 KVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG 302

Query: 249 LHNFARMAFPNRV 261
                 +  P   
Sbjct: 303 SWKRPSLRVPGTD 315

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 65/209 (31%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNICHRNLVRF 134
           L+  IG G F  V  G        VA+K +      A+ ++F+AE   +  + H NLV+ 
Sbjct: 25  LLQTIGKGEFGDVMLGD--YRGNKVAVKCIK---NDATAQAFLAEASVMTQLRHSNLVQL 79

Query: 135 ----------------------------------------ISIAIDVASALDYL-HHHCQ 153
                                                   +  ++DV  A++YL  ++  
Sbjct: 80  LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF- 138

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDY 210
              +H D    NVL+  D  A + DF L +          S+ +  +  + +TA   L  
Sbjct: 139 ---VHRDLAARNVLVSEDNVAKVSDFGLTK-------EASSTQDTGKLPVKWTAPEALRE 188

Query: 211 DLGSEVSTNGDAYNYGILLLEMVTR-RKP 238
               + ST  D +++GILL E+ +  R P
Sbjct: 189 ---KKFSTKSDVWSFGILLWEIYSFGRVP 214

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
           + + + V   L  LHH+    ++H   +P +++LD      +  FE           + S
Sbjct: 209 LQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS 265

Query: 195 SSNG---VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
                  +       +   D  + ++ + DA+  G+++  +     P       D
Sbjct: 266 RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP----ITKD 316

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 40/212 (18%), Positives = 83/212 (39%), Gaps = 62/212 (29%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAV---VAIKVLSIQCQGASKS-FMAECKALKNICHRNL 131
           L  ++G G F  VY+GV+  ++     VA+K     C   +K  FM+E   +KN+ H ++
Sbjct: 16  LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHI 75

Query: 132 VRF-------------------------------------ISIAIDVASALDYL-HHHCQ 153
           V+                                      +  ++ +  A+ YL   +C 
Sbjct: 76  VKLIGIIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINC- 134

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
              +H D    N+L+ +     +GDF L+R+   + +     ++  R  I + +      
Sbjct: 135 ---VHRDIAVRNILVASPECVKLGDFGLSRY---IEDEDYYKASVTRLPIKWMSP----- 183

Query: 214 SEV------STNGDAYNYGILLLEMVTR-RKP 238
            E       +T  D + + + + E+++  ++P
Sbjct: 184 -ESINFRRFTTASDVWMFAVCMWEILSFGKQP 214

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 54/214 (25%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRN- 130
           + ++  IG G    V+Q V +  + + AIK ++++        S+  E   L  +   + 
Sbjct: 58  YSILKQIGSGGSSKVFQ-VLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 116

Query: 131 -----------------------------LVRFISIAIDVA--------SALDYLHHHCQ 153
                                        L +  SI              A+  +H H  
Sbjct: 117 KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG- 175

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNG--------VRRTIG 204
             I+H D KP+N L+ + +   + DF +A   + + ++  + S  G          + + 
Sbjct: 176 --IVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMS 232

Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
            +  +    S++S   D ++ G +L  M   + P
Sbjct: 233 SSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 266

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 60/217 (27%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNL 131
           + ++  IG G    V+Q V +  + + AIK ++++        S+  E   L  +   + 
Sbjct: 30  YSILKQIGSGGSSKVFQ-VLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 88

Query: 132 --VRFISIAID------------------------------------VASALDYLHHHCQ 153
             +R     I                                     +  A+  +H H  
Sbjct: 89  KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH-- 146

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNGVRRTIGYTA----L 208
             I+H D KP+N L+ + +   + DF +A   + + ++  + S  G   T+ Y       
Sbjct: 147 -GIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVG---TVNYMPPEAIK 201

Query: 209 DYDLGSEVSTNGDAYNY-------GILLLEMVTRRKP 238
           D     E   +    +        G +L  M   + P
Sbjct: 202 DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 238

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 34/180 (18%), Positives = 60/180 (33%), Gaps = 53/180 (29%)

Query: 40  FKKRRGPSKQPLRLTLRNAI----PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDL 95
           + +    + +  +  LR  +    P+   +S +K          IG GS   V       
Sbjct: 19  YFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVK----------IGEGSTGIVCLAREKH 68

Query: 96  NRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFIS------------------- 136
           +   VA+K++ ++ Q   +    E   +++  H N+V                       
Sbjct: 69  SGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGA 128

Query: 137 --------------IAI---DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF 179
                         IA     V  AL YLH    + ++H D K  ++LL  D    + DF
Sbjct: 129 LTDIVSQVRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDF 185

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 41/206 (19%), Positives = 77/206 (37%), Gaps = 48/206 (23%)

Query: 76  LINLIGVGSFDAVYQGVFDL----NRAVVAIKVL-SIQCQGASKSFMAECKALKNICHRN 130
            I ++G G+F  VY+G++       +  VAIK L       A+K  + E   + ++ + +
Sbjct: 19  KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH 78

Query: 131 LVRFI-------------------------------------SIAIDVASALDYLHHHCQ 153
           + R +                                     +  + +A  ++YL     
Sbjct: 79  VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR- 137

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             ++H D    NVL+       I DF LA+          +   G +  I + AL+  L 
Sbjct: 138 --LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAE--GGKVPIKWMALESILH 193

Query: 214 SEVSTNGDAYNYGILLLEMVTR-RKP 238
              +   D ++YG+ + E++T   KP
Sbjct: 194 RIYTHQSDVWSYGVTVWELMTFGSKP 219

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 40/209 (19%), Positives = 78/209 (37%), Gaps = 56/209 (26%)

Query: 76  LINLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQCQGASKS-FMAECKALKNICHRNL 131
           L   IG G F  V+QG++         VAIK        + +  F+ E   ++   H ++
Sbjct: 19  LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI 78

Query: 132 VR-------------------------------------FISIAIDVASALDYL-HHHCQ 153
           V+                                      I  A  +++AL YL      
Sbjct: 79  VKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRF- 137

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---LDY 210
              +H D    NVL+ ++    +GDF L+R+   + + T   ++  +  I + A   +++
Sbjct: 138 ---VHRDIAARNVLVSSNDCVKLGDFGLSRY---MEDSTYYKASKGKLPIKWMAPESINF 191

Query: 211 DLGSEVSTNGDAYNYGILLLEMVTR-RKP 238
                 ++  D + +G+ + E++    KP
Sbjct: 192 ---RRFTSASDVWMFGVCMWEILMHGVKP 217

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 57/282 (20%)

Query: 7   CLLEYRLESHRFLHDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEY--Y 64
           C L         +      +    +   L     +  R  +           I  E   Y
Sbjct: 318 CRLVNGATQSFIIRPQKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDTY 377

Query: 65  ESLLKATDGFP-----LINLIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQCQGASKS- 115
                           L   IG G F  V+QG++   +     VAIK        + +  
Sbjct: 378 TMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREK 437

Query: 116 FMAECKALKNICHRNLVR-------------------------------------FISIA 138
           F+ E   ++   H ++V+                                      I  A
Sbjct: 438 FLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYA 497

Query: 139 IDVASALDYLH-HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN 197
             +++AL YL         +H D    NVL+ ++    +GDF L+R    + + T   ++
Sbjct: 498 YQLSTALAYLESKRF----VHRDIAARNVLVSSNDCVKLGDFGLSR---YMEDSTYYKAS 550

Query: 198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKP 238
             +  I + A +       ++  D + +G+ + E++    KP
Sbjct: 551 KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP 592

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 60/217 (27%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAECKALKNICHRNL 131
           + ++  IG G    V+Q   +  + + AIK ++++        S+  E   L  +   + 
Sbjct: 11  YSILKQIGSGGSSKVFQV-LNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSD 69

Query: 132 --VRFISIAID------------------------------------VASALDYLHHHCQ 153
             +R     I                                     +  A+  +H H  
Sbjct: 70  KIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH-- 127

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNGVRRTIGYTA----L 208
             I+H D KP+N L+ + +   + DF +A   + + ++  + S  G   T+ Y       
Sbjct: 128 -GIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKDSQVG---TVNYMPPEAIK 182

Query: 209 DYDLGSEVSTNGDAYNY-------GILLLEMVTRRKP 238
           D     E   +    +        G +L  M   + P
Sbjct: 183 DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP 219

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 47/229 (20%), Positives = 76/229 (33%), Gaps = 78/229 (34%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           F  I ++G G+F  V +    L+    AIK +    +    + ++E   L ++ H+ +VR
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIR-HTEEKLSTILSEVMLLASLNHQYVVR 66

Query: 134 ------------------------FI---------------------------SIAIDVA 142
                                   FI                            +   + 
Sbjct: 67  YYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQIL 126

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF------RQEVSNPTQSSS 196
            AL Y+H      I+H D KP N+ +D      IGDF LA+         ++ +     S
Sbjct: 127 EALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGS 183

Query: 197 NGVRRT-IG---YTALDYDLGSEVSTNGDAYNY-------GILLLEMVT 234
           +    + IG   Y A      +EV      YN        GI+  EM+ 
Sbjct: 184 SDNLTSAIGTAMYVA------TEVLDGTGHYNEKIDMYSLGIIFFEMIY 226

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 59.0 bits (143), Expect = 5e-10
 Identities = 25/211 (11%), Positives = 44/211 (20%), Gaps = 80/211 (37%)

Query: 76  LINLIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQCQGASKS---FMAECKALKNICHRN 130
           L+   G       +Q + D  L+R  VA+  +  Q           ++    L  I    
Sbjct: 35  LLIFHGGVPPLQFWQAL-DTALDR-QVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPG 92

Query: 131 LVR-----------FI------------------------SIAIDVASALDYLHHHCQEL 155
           + R            +                             +A+A D  H      
Sbjct: 93  VARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAG--- 149

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           +      PS V +  D    +                                      +
Sbjct: 150 VALSIDHPSRVRVSIDGDVVLAYP------------------------AT-------MPD 178

Query: 216 VSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            +   D    G  L  ++  R P        
Sbjct: 179 ANPQDDIRGIGASLYALLVNRWP----LPEA 205

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 42/231 (18%), Positives = 69/231 (29%), Gaps = 69/231 (29%)

Query: 65  ESLLKATDGFPLINLIGVG--SFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSFMAEC 120
            S L     + L+ +IG G      V    +      V ++ ++++            E 
Sbjct: 18  SSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGEL 77

Query: 121 KALKNICHRNLVRFI------------------------------------SIAI---DV 141
              K   H N+V +                                     +IA     V
Sbjct: 78  HVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGV 137

Query: 142 ASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRR 201
             ALDY+HH      +H   K S++L+  D     G   L+  R   +      S+G R+
Sbjct: 138 LKALDYIHHMGY---VHRSVKASHILISVD-----GKVYLSGLR--SN--LSMISHGQRQ 185

Query: 202 TIGYTALDYDLGS------EV-STNGDAYNY-------GILLLEMVTRRKP 238
            + +    Y +        EV   N   Y+        GI   E+     P
Sbjct: 186 RVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP 236

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 48/204 (23%)

Query: 76  LINLIGVGSFDAVYQGVF---DLNRAVVAIKVL-SIQCQGASKSFMAECKALKNICHRNL 131
              +IG G F  VY G     D  +   A+K L  I   G    F+ E   +K+  H N+
Sbjct: 93  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 152

Query: 132 VRF---------------------------------------ISIAIDVASALDYL-HHH 151
           +                                         I   + VA  + +L    
Sbjct: 153 LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK 212

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
                +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+  
Sbjct: 213 F----VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESL 268

Query: 212 LGSEVSTNGDAYNYGILLLEMVTR 235
              + +T  D +++G+LL E++TR
Sbjct: 269 QTQKFTTKSDVWSFGVLLWELMTR 292

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 48/204 (23%)

Query: 76  LINLIGVGSFDAVYQGVF---DLNRAVVAIKVL-SIQCQGASKSFMAECKALKNICHRNL 131
              +IG G F  VY G +     NR   AIK L  I      ++F+ E   ++ + H N+
Sbjct: 25  SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV 84

Query: 132 VR---------------------------------------FISIAIDVASALDYL-HHH 151
           +                                         IS  + VA  ++YL    
Sbjct: 85  LALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQK 144

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
                +H D    N +LD      + DF LAR   +    +       R  + +TAL+  
Sbjct: 145 F----VHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL 200

Query: 212 LGSEVSTNGDAYNYGILLLEMVTR 235
                +T  D +++G+LL E++TR
Sbjct: 201 QTYRFTTKSDVWSFGVLLWELLTR 224

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 43/206 (20%), Positives = 72/206 (34%), Gaps = 55/206 (26%)

Query: 76  LINLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQCQGASKS-FMAECKALKNICHRN 130
            I  +G G F  V    +D        +VA+K L        +S +  E   L+ + H +
Sbjct: 35  KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEH 94

Query: 131 LVRF--------------------------------------ISIAIDVASALDYLH-HH 151
           ++++                                      +  A  +   + YLH  H
Sbjct: 95  IIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQH 154

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---L 208
                +H D    NVLLDND    IGDF LA+   E     +   +G    + + A   L
Sbjct: 155 Y----IHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDG-DSPVFWYAPECL 209

Query: 209 DYDLGSEVSTNGDAYNYGILLLEMVT 234
                 +     D +++G+ L E++T
Sbjct: 210 KE---YKFYYASDVWSFGVTLYELLT 232

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 40/233 (17%), Positives = 71/233 (30%), Gaps = 64/233 (27%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF 134
           +  ++  G F  VY+     +    A+K L    +  +++ + E   +K +  H N+V+F
Sbjct: 32  VRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQF 91

Query: 135 IS-----------------------------------------------IAIDVASALDY 147
            S                                               I      A+ +
Sbjct: 92  CSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQH 151

Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRR------ 201
           +H   +  I+H D K  N+LL N     + DF  A       + + S+            
Sbjct: 152 MHRQ-KPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITR 210

Query: 202 --TIGYTA---LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNL 249
             T  Y     +D      +    D +  G +L  +  R+ P    FE    L
Sbjct: 211 NTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHP----FEDGAKL 259

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 49/165 (29%)

Query: 51  LRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ 110
           LR  +    PK+ Y    K          IG G+   VY  +       VAI+ +++Q Q
Sbjct: 9   LRSIVSVGDPKKKYTRFEK----------IGQGASGTVYTAMDVATGQEVAIRQMNLQQQ 58

Query: 111 GASKSFMAECKALKNICHRNLVRFIS---------------------------------I 137
              +  + E   ++   + N+V ++                                  I
Sbjct: 59  PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQI 118

Query: 138 AI---DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF 179
           A    +   AL++LH +    ++H D K  N+LL  D    + DF
Sbjct: 119 AAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDF 160

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 58.0 bits (141), Expect = 9e-10
 Identities = 46/220 (20%), Positives = 77/220 (35%), Gaps = 67/220 (30%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRN 130
           F +   +G G F  VY      N+ ++A+KVL    ++ +G       E +   ++ H N
Sbjct: 16  FDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN 75

Query: 131 LVRF---------ISIAID----------------------------VASALDYLHHHCQ 153
           ++R          I + ++                            +A AL Y H    
Sbjct: 76  ILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERK- 134

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             ++H D KP N+L+       I DF  +              +  RRT+  T LDY L 
Sbjct: 135 --VIHRDIKPENLLMGYKGELKIADFGWSVHAP----------SLRRRTMCGT-LDY-LP 180

Query: 214 SEVSTNGDAYNY-------GILLLEMVTRRKPIDFMFEGD 246
            E+   G  ++        G+L  E +    P    F+  
Sbjct: 181 PEM-IEGKTHDEKVDLWCAGVLCYEFLVGMPP----FDSP 215

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 52/215 (24%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHR 129
           + +  +  +G G++  VY+   D    +VA+K + +  +  G   + + E   LK + H 
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAK-DSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHP 79

Query: 130 NLVRFISIAIDVAS-------------------------------------ALDYLHHHC 152
           N+V  I +                                            + + H H 
Sbjct: 80  NIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHR 139

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              ILH D KP N+L+++D    + DF LAR       P +S ++ V  T+ Y A D  +
Sbjct: 140 ---ILHRDLKPQNLLINSDGALKLADFGLARA---FGIPVRSYTHEV-VTLWYRAPDVLM 192

Query: 213 GSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           GS+  ST+ D ++ G +  EM+T  KP+   F G 
Sbjct: 193 GSKKYSTSVDIWSIGCIFAEMIT-GKPL---FPGV 223

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 60/226 (26%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           +  I  +G G F  V       +    A+K +    Q   +    E    +   H N++R
Sbjct: 31  YLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILR 90

Query: 134 FIS---------------------------------------------IAIDVASALDYL 148
            ++                                             + + +   L+ +
Sbjct: 91  LVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAI 150

Query: 149 HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNGVRR----TI 203
           H        H D KP+N+LL ++    + D          V    Q+ +         TI
Sbjct: 151 HAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTI 207

Query: 204 GYTA---LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            Y A           +    D ++ G +L  M+    P    ++  
Sbjct: 208 SYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGP----YDMV 249

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 55/219 (25%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           D +  I  +G G++  VY+ +  +    VAIK   L  + +G   + + E   LK + HR
Sbjct: 34  DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHR 93

Query: 130 NLVRFISIAID------------------------------------VASALDYLHHHCQ 153
           N++   S+                                       + + +++ H    
Sbjct: 94  NIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRR- 152

Query: 154 ELILHCDPKPSNVLLDNDLFAH-----IGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL 208
              LH D KP N+LL     +      IGDF LAR       P +  ++ +  T+ Y   
Sbjct: 153 --CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARA---FGIPIRQFTHEI-ITLWYRPP 206

Query: 209 DYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           +  LGS   ST+ D ++   +  EM+  + P+   F GD
Sbjct: 207 EILLGSRHYSTSVDIWSIACIWAEMLM-KTPL---FPGD 241

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 41/144 (28%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           + ++  +G G+F  VY+       A+ A KV+  + +   + ++ E + L    H  +V+
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80

Query: 134 FIS-----------------------------------IAI---DVASALDYLHHHCQEL 155
            +                                    I +    +  AL++LH    + 
Sbjct: 81  LLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKR 137

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDF 179
           I+H D K  NVL+  +    + DF
Sbjct: 138 IIHRDLKAGNVLMTLEGDIRLADF 161

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 43/207 (20%), Positives = 70/207 (33%), Gaps = 54/207 (26%)

Query: 76  LINLIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNL 131
              +IG G F  VY G     D  +   A+K L+     G    F+ E   +K+  H N+
Sbjct: 29  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV 88

Query: 132 VR---------------------------------------FISIAIDVASALDYLH-HH 151
           +                                         I   + VA  + YL    
Sbjct: 89  LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK 148

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---L 208
                +H D    N +LD      + DF LAR   +    +  +  G +  + + A   L
Sbjct: 149 F----VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESL 204

Query: 209 DYDLGSEVSTNGDAYNYGILLLEMVTR 235
                +  S   D +++G+LL E++TR
Sbjct: 205 QTQKFTTKS---DVWSFGVLLWELMTR 228

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 44/150 (29%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRN 130
           F + NL+G GSF  VY+         VAIK++    +   G  +    E K    + H +
Sbjct: 13  FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS 72

Query: 131 LVRFISIAID--------------------------------------VASALDYLHHHC 152
           ++   +   D                                      + + + YLH H 
Sbjct: 73  ILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHG 132

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELA 182
              ILH D   SN+LL  ++   I DF LA
Sbjct: 133 ---ILHRDLTLSNLLLTRNMNIKIADFGLA 159

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 67/220 (30%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRN 130
           F +   +G G F  VY      ++ ++A+KVL    ++  G       E +   ++ H N
Sbjct: 11  FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN 70

Query: 131 LVRFISIAID-------------------------------------VASALDYLHHHCQ 153
           ++R      D                                     +A+AL Y H    
Sbjct: 71  ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR- 129

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             ++H D KP N+LL +     I DF  +              +  R  +  T LDY L 
Sbjct: 130 --VIHRDIKPENLLLGSAGELKIADFGWSVHAP----------SSRRTDLCGT-LDY-LP 175

Query: 214 SEVSTNGDAYNY-------GILLLEMVTRRKPIDFMFEGD 246
            E+   G  ++        G+L  E +  + P    FE +
Sbjct: 176 PEM-IEGRMHDEKVDLWSLGVLCYEFLVGKPP----FEAN 210

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 72/221 (32%)

Query: 76  LINLIGVGSFDAVYQGVF-------DLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH 128
               +G G+F  +++GV         L+   V +KVL    +  S+SF      +  + H
Sbjct: 12  FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSH 71

Query: 129 RNLVRF--------------------------------------ISIAIDVASALDYL-H 149
           ++LV                                        + +A  +A+A+ +L  
Sbjct: 72  KHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEE 131

Query: 150 HHCQELILHCDPKPSNVLLDNDLFAH--------IGDFELARFRQEVSNPTQSSSNGVRR 201
           +      +H +    N+LL  +            + D  ++              + ++ 
Sbjct: 132 NTL----IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLP--------KDILQE 179

Query: 202 TIGYTA---LDYDLGSEVSTNGDAYNYGILLLEMVTR-RKP 238
            I +     ++      ++   D +++G  L E+ +   KP
Sbjct: 180 RIPWVPPECIEN--PKNLNLATDKWSFGTTLWEICSGGDKP 218

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 50/160 (31%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICHRN 130
             + L +++G G+   V++G       + AIKV + I         M E + LK + H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 131 LVR------------------------------------------FISIAIDVASALDYL 148
           +V+                                          F+ +  DV   +++L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 149 HHHCQELILHCDPKPSNVLL----DNDLFAHIGDFELARF 184
             +    I+H + KP N++     D      + DF  AR 
Sbjct: 129 RENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 62/211 (29%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRNLV 132
           F  +  IG GSF  V++G+ +  + VVAIK++ + + +   +    E   L       + 
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 83

Query: 133 RFI---------------------------------SIAI---DVASALDYLHHHCQELI 156
           ++                                   IA    ++   LDYLH       
Sbjct: 84  KYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEK---K 140

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT--IGYTALDYDLGS 214
           +H D K +NVLL       + DF +A          Q +   ++R   +G T   + +  
Sbjct: 141 IHRDIKAANVLLSEHGEVKLADFGVA---------GQLTDTQIKRNTFVG-TP--FWMAP 188

Query: 215 EVSTNGDAYNY-------GILLLEMVTRRKP 238
           EV      Y+        GI  +E+     P
Sbjct: 189 EVIKQSA-YDSKADIWSLGITAIELARGEPP 218

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 55/223 (24%)

Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI 126
           + ++  F  +  +G G++  VY+G+       VA+K + +  + G   + + E   +K +
Sbjct: 1   MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKEL 60

Query: 127 CHRNLVRFISIAIDVAS------------------------------------------A 144
            H N+VR   +                                                 
Sbjct: 61  KHENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQG 120

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
           L + H +    ILH D KP N+L++      +GDF LAR       P  + S+ V  T+ 
Sbjct: 121 LAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARA---FGIPVNTFSSEV-VTLW 173

Query: 205 YTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           Y A D  +GS   ST+ D ++ G +L EM+T  KP+   F G 
Sbjct: 174 YRAPDVLMGSRTYSTSIDIWSCGCILAEMIT-GKPL---FPGT 212

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 52/215 (24%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV--LSIQCQGASKSFMAECKALKNICHR 129
           + +  +  IG G++  VY+   +      A+K   L  + +G   + + E   LK + H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGE-TFALKKIRLEKEDEGIPSTTIREISILKELKHS 60

Query: 130 NLVRFISI---------------------------AIDVA----------SALDYLHHHC 152
           N+V+   +                            ++            + + Y H   
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR 120

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              +LH D KP N+L++ +    I DF LAR       P +  ++ +  T+ Y A D  +
Sbjct: 121 ---VLHRDLKPQNLLINREGELKIADFGLARA---FGIPVRKYTHEI-VTLWYRAPDVLM 173

Query: 213 GSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           GS+  ST  D ++ G +  EMV    P+   F G 
Sbjct: 174 GSKKYSTTIDIWSVGCIFAEMVNGT-PL---FPGV 204

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 34/148 (22%)

Query: 105 LSIQ---CQGAS-KSFMAECKALKNICHRNLVRFISIAIDVASALDYLHHHCQELILHCD 160
           L IQ   C+  + K +M    +L++  H   +    I I +A A+++LH      ++H D
Sbjct: 136 LYIQMQLCRKENLKDWMNRRCSLEDREHGVCLH---IFIQIAEAVEFLHSKG---LMHRD 189

Query: 161 PKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVST-- 218
            KPSN+    D    +GDF L                  +  +           +V T  
Sbjct: 190 LKPSNIFFTMDDVVKVGDFGLVT--------AMDQDEEEQTVLTPMPAYATHTGQVGTKL 241

Query: 219 -------NGDAYNY-------GILLLEM 232
                  +G+ Y++       G++L E+
Sbjct: 242 YMSPEQIHGNNYSHKVDIFSLGLILFEL 269

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 50/152 (32%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLV 132
           F L+ L+G G++  VY+G       + AIKV+ +      +    E   LK    HRN+ 
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIA 84

Query: 133 RFI------------------------------------------SIAI---DVASALDY 147
            +                                            IA    ++   L +
Sbjct: 85  TYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSH 144

Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDF 179
           LH H    ++H D K  NVLL  +    + DF
Sbjct: 145 LHQHK---VIHRDIKGQNVLLTENAEVKLVDF 173

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 50/160 (31%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICHRN 130
             + L +++G G+   V++G       + AIKV + I         M E + LK + H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 131 LVR------------------------------------------FISIAIDVASALDYL 148
           +V+                                          F+ +  DV   +++L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 149 HHHCQELILHCDPKPSNVLL----DNDLFAHIGDFELARF 184
             +    I+H + KP N++     D      + DF  AR 
Sbjct: 129 RENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 46/174 (26%)

Query: 47  SKQPLRLTLRNAIPKEYYESLLKATDG---FPLINLIGVGSFDAVYQGVFDLNRAVVAIK 103
           S + ++L        +  +           F ++  +G GS+ +VY+ +      +VAIK
Sbjct: 1   SLETVQLRNPPRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIK 60

Query: 104 VLSIQCQGASKSFMAECKALKNICHRNLVRFIS--------------------------- 136
            + ++     +  + E   ++     ++V++                             
Sbjct: 61  QVPVESD--LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLR 118

Query: 137 --------IAI---DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF 179
                   IA         L+YLH       +H D K  N+LL+ +  A + DF
Sbjct: 119 NKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADF 169

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 58/213 (27%)

Query: 74  FPLINLIGVGSF-DAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNIC-HRN 130
           F   +++G G+    VY+G+FD NR V A+K +  +C   A +    E + L+    H N
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFD-NRDV-AVKRILPECFSFADR----EVQLLRESDEHPN 79

Query: 131 LVR---------FISIAI----------------------------DVASALDYLHHHCQ 153
           ++R         F  IAI                               S L +LH    
Sbjct: 80  VIRYFCTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLN- 138

Query: 154 ELILHCDPKPSNVLLDN-----DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA- 207
             I+H D KP N+L+        + A I DF L +        + S  +GV  T G+ A 
Sbjct: 139 --IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV-GRHSFSRRSGVPGTEGWIAP 195

Query: 208 --LDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
             L  D     +   D ++ G +   +++    
Sbjct: 196 EMLSEDCKENPTYTVDIFSAGCVFYYVISEGSH 228

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 49/210 (23%), Positives = 76/210 (36%), Gaps = 51/210 (24%)

Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIK--VLSIQCQGASKSFMAECKALKNICHRNLVRF 134
           + L+G GS+  V +        +VAIK  + S   +   K  M E K LK + H NLV  
Sbjct: 30  LGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNL 89

Query: 135 ISI---------------------------AIDVA----------SALDYLHHHCQELIL 157
           + +                            +D            + + + H H    I+
Sbjct: 90  LEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN---II 146

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV- 216
           H D KP N+L+       + DF  AR    ++ P +   + V  T  Y A +  +G    
Sbjct: 147 HRDIKPENILVSQSGVVKLCDFGFAR---TLAAPGEVYDDEV-ATRWYRAPELLVGDVKY 202

Query: 217 STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
               D +  G L+ EM     P+   F GD
Sbjct: 203 GKAVDVWAIGCLVTEMFMGE-PL---FPGD 228

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 35/146 (23%), Positives = 52/146 (35%), Gaps = 43/146 (29%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS---KSFMAECKALKNICHRN 130
           F  +  IG GSF AVY      N  VVAIK +S   + ++   +  + E + L+ + H N
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115

Query: 131 LVRFI----------------------------------SIAI---DVASALDYLHHHCQ 153
            +++                                    IA         L YLH    
Sbjct: 116 TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---S 172

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDF 179
             ++H D K  N+LL       +GDF
Sbjct: 173 HNMIHRDVKAGNILLSEPGLVKLGDF 198

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 58/162 (35%)

Query: 76  LINLIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRN 130
           L  ++G G F +V +G     D     VA+K + +    Q   + F++E   +K+  H N
Sbjct: 38  LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN 97

Query: 131 LVR------------------------------------------------FISIAIDVA 142
           ++R                                                 +   +D+A
Sbjct: 98  VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIA 157

Query: 143 SALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
             ++YL + +     LH D    N +L +D+   + DF L++
Sbjct: 158 LGMEYLSNRNF----LHRDLAARNCMLRDDMTVCVADFGLSK 195

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 54/213 (25%)

Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKS---FMA--ECKALKNICHRNL 131
           ++ +G G F  VY+        +VAIK + +  +  +K      A  E K L+ + H N+
Sbjct: 15  LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI 74

Query: 132 VRFI---------------------------SIAIDVA----------SALDYLHHHCQE 154
           +  +                           S+ +  +            L+YLH H   
Sbjct: 75  IGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW-- 132

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            ILH D KP+N+LLD +    + DF LA+      +P ++ ++ V  T  Y A +   G+
Sbjct: 133 -ILHRDLKPNNLLLDENGVLKLADFGLAKS---FGSPNRAYTHQV-VTRWYRAPELLFGA 187

Query: 215 EV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            +     D +  G +L E++  R P      GD
Sbjct: 188 RMYGVGVDMWAVGCILAELLL-RVPF---LPGD 216

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 51/210 (24%)

Query: 77  INLIGVGSFDAVYQGVFDLNRAVVAIK--VLSIQCQGASKSFMAECKALKNICHRNLVRF 134
           I  IG GS+  V++        +VAIK  + S       K  + E + LK + H NLV  
Sbjct: 8   IGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNL 67

Query: 135 I-------------------------------------SIAIDVASALDYLHHHCQELIL 157
           +                                     SI      A+++ H H     +
Sbjct: 68  LEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN---CI 124

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV- 216
           H D KP N+L+       + DF  AR    ++ P+    + V  T  Y + +  +G    
Sbjct: 125 HRDVKPENILITKHSVIKLCDFGFAR---LLTGPSDYYDDEV-ATRWYRSPELLVGDTQY 180

Query: 217 STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
               D +  G +  E+++   P+   + G 
Sbjct: 181 GPPVDVWAIGCVFAELLSGV-PL---WPGK 206

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 57/224 (25%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMA--ECKALKNICHR 129
             +  +  IG G+F  V++         VA+K + ++ +       A  E K L+ + H 
Sbjct: 17  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 76

Query: 130 NLVRFISIAIDVA---------------------------------------------SA 144
           N+V  I I    A                                             + 
Sbjct: 77  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNG 136

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR-FRQEVSNPTQSSSNGVRRTI 203
           L Y+H +    ILH D K +NVL+  D    + DF LAR F    ++     +N V  T+
Sbjct: 137 LYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRV-VTL 192

Query: 204 GYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            Y   +  LG        D +  G ++ EM T R PI    +G+
Sbjct: 193 WYRPPELLLGERDYGPPIDLWGAGCIMAEMWT-RSPI---MQGN 232

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 43/152 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRNLV 132
           L + +GVG+F  V  G   L    VA+K+L+   I+          E + LK   H +++
Sbjct: 15  LGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHII 74

Query: 133 R----------------FIS-------------IAIDVA--------SALDYLHHHCQEL 155
           +                ++S             +    A        SA+DY H H    
Sbjct: 75  KLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHM--- 131

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQE 187
           ++H D KP NVLLD  + A I DF L+    +
Sbjct: 132 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 163

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 59/163 (36%)

Query: 76  LINLIGVGSFDAVYQGVF---DLNRAVVAIKVL--SIQCQGASKSFMAECKALKNICHRN 130
           L  ++G G F +V +      D +   VA+K+L   I      + F+ E   +K   H +
Sbjct: 27  LGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPH 86

Query: 131 LVRFI-------------------------------------------------SIAIDV 141
           + + +                                                    +D+
Sbjct: 87  VAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDI 146

Query: 142 ASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
           A  ++YL   +     +H D    N +L  D+   + DF L+R
Sbjct: 147 ACGMEYLSSRNF----IHRDLAARNCMLAEDMTVCVADFGLSR 185

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 67/216 (31%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH-- 128
           F ++  IG GSF  V     +  + + A+K ++      +   ++   E + ++ + H  
Sbjct: 17  FEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPF 76

Query: 129 ------------------------------RNLVRF------ISIAIDVASALDYLHHHC 152
                                         +  V F      + I  ++  ALDYL +  
Sbjct: 77  LVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFIC-ELVMALDYLQNQR 135

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN-GVRRTIGYTALDYD 211
              I+H D KP N+LLD     HI DF +A     +   TQ ++  G   T  Y A    
Sbjct: 136 ---IIHRDMKPDNILLDEHGHVHITDFNIAA---MLPRETQITTMAG---TKPYMA---- 182

Query: 212 LGSEV--STNGDAYNY-------GILLLEMVTRRKP 238
              E+  S  G  Y++       G+   E++  R+P
Sbjct: 183 --PEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRP 216

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 47/159 (29%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS----IQCQGASKSFMAECKALKNICHRNL 131
           + +L+G GS+  V + +        A+K+L      +      +   E + L+ + H+N+
Sbjct: 9   MGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNV 68

Query: 132 VR---------------------------FISIA-----IDVA--------SALDYLHHH 151
           ++                             S+      +  A          L+YLH  
Sbjct: 69  IQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ 128

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN 190
               I+H D KP N+LL       I    +A      + 
Sbjct: 129 G---IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAA 164

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 34/157 (21%), Positives = 52/157 (33%), Gaps = 43/157 (27%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN 130
              F  + ++G G+F  V+     L   + A+K +         S   E   LK I H N
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN 67

Query: 131 LVRFI-------------------------------------SIAIDVASALDYLHHHCQ 153
           +V                                         +   V SA+ YLH +  
Sbjct: 68  IVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENG- 126

Query: 154 ELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQE 187
             I+H D KP N+L    + +    I DF L++  Q 
Sbjct: 127 --IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN 161

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT 202
             LD+LH H    ++H D KP N+L+ +     + DF LAR     S     +S  V  T
Sbjct: 131 RGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARI---YSFQMALTSVVV--T 182

Query: 203 IGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           + Y A +  L S  +T  D ++ G +  EM   RKP+   F G 
Sbjct: 183 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFR-RKPL---FRGS 222

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT 202
             LD+LH +C   I+H D KP N+L+ +     + DF LAR     S     +   V  T
Sbjct: 131 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARI---YSYQMALTPVVV--T 182

Query: 203 IGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           + Y A +  L S  +T  D ++ G +  EM   RKP+   F G+
Sbjct: 183 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFR-RKPL---FCGN 222

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 17/111 (15%)

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAH----IGDFELARFRQEVSNPTQSSSNG 198
             + YLH +    +LH D KP+N+L+  +        I D   AR     ++P +  ++ 
Sbjct: 139 DGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARL---FNSPLKPLADL 192

Query: 199 VRR--TIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
                T  Y A +  LG+   +   D +  G +  E++T  +PI   F   
Sbjct: 193 DPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT-SEPI---FHCR 239

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 36/275 (13%), Positives = 75/275 (27%), Gaps = 65/275 (23%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAV-----VAIKVLSIQCQGASKSFMAECKALKN 125
           +    + +L+G G+F  VY+                +KV                + LK 
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 126 ICHRNLVRF------------------------------------------ISIAIDVAS 143
                 ++F                                          IS A+ +  
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLY 183

Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAH-----------IGDFELARFRQEVSNPT 192
            ++ +H      I+H D KP N +L N                + D   +   +    P 
Sbjct: 184 MIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLF--PK 238

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLH-N 251
            +       T G+  ++       +   D +     +  M+           G+      
Sbjct: 239 GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGL 298

Query: 252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRK 286
           F R+   +   +  ++ +LN        + ++LR+
Sbjct: 299 FRRLPHLDMWNEFFHV-MLNIPDCHHLPSLDLLRQ 332

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 43/152 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRNLV 132
           L + +GVG+F  V  G  +L    VA+K+L+   I+          E + LK   H +++
Sbjct: 20  LGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHII 79

Query: 133 R----------------FIS-------------IAIDVA--------SALDYLHHHCQEL 155
           +                ++S             +    +        S +DY H H    
Sbjct: 80  KLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHM--- 136

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQE 187
           ++H D KP NVLLD  + A I DF L+    +
Sbjct: 137 VVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 168

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 42/151 (27%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRNLV 132
           +   +G GSF  V        +  VA+K +S   ++          E   LK + H +++
Sbjct: 13  IRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHII 72

Query: 133 R------------------------FIS----IAIDVA--------SALDYLHHHCQELI 156
           +                        +I     +  D           A++Y H H    I
Sbjct: 73  KLYDVITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHK---I 129

Query: 157 LHCDPKPSNVLLDNDLFAHIGDFELARFRQE 187
           +H D KP N+LLD++L   I DF L+    +
Sbjct: 130 VHRDLKPENLLLDDNLNVKIADFGLSNIMTD 160

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 49/157 (31%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMA-----ECKALKN 125
           +  ++ +G G+F  V+  V       V +K +    +      +         E   L  
Sbjct: 26  YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSR 85

Query: 126 ICHRNLVR---------FISIAID-----------------------------VASALDY 147
           + H N+++         F  + ++                             + SA+ Y
Sbjct: 86  VEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGY 145

Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF 184
           L       I+H D K  N+++  D    + DF  A +
Sbjct: 146 LRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAY 179

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 34/165 (20%), Positives = 54/165 (32%), Gaps = 64/165 (38%)

Query: 76  LINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQGASKS----FMAECKALKNI 126
           +   +G GSF  VY+GV      D     VAIK ++   + AS      F+ E   +K  
Sbjct: 29  MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVN---EAASMRERIEFLNEASVMKEF 85

Query: 127 CHRNLVR-----------------------------------------------FISIAI 139
              ++VR                                                I +A 
Sbjct: 86  NCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAG 145

Query: 140 DVASALDYLH-HHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
           ++A  + YL+ +      +H D    N ++  D    IGDF + R
Sbjct: 146 EIADGMAYLNANKF----VHRDLAARNCMVAEDFTVKIGDFGMTR 186

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 50/155 (32%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSI---------QCQGASKSFMAECKALKNIC-HR 129
           +G G    V + +        A+K++ +         + Q   ++ + E   L+ +  H 
Sbjct: 25  LGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHP 84

Query: 130 NLVRFI-------------------------------------SIAIDVASALDYLHHHC 152
           N+++                                        I   +   +  LH   
Sbjct: 85  NIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN 144

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE 187
              I+H D KP N+LLD+D+   + DF  +     
Sbjct: 145 ---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDP 176

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 53/166 (31%)

Query: 69  KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK-SFMAECKALKNIC 127
           +    + +   +G G F  V + +       VAIK    +    ++  +  E + +K + 
Sbjct: 11  QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLN 70

Query: 128 HRNLVR----------------------------------------------FISIAIDV 141
           H N+V                                                 ++  D+
Sbjct: 71  HPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDI 130

Query: 142 ASALDYLHHHCQELILHCDPKPSNVLLD---NDLFAHIGDFELARF 184
           +SAL YLH +    I+H D KP N++L      L   I D   A+ 
Sbjct: 131 SSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLGYAKE 173

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 42/230 (18%), Positives = 71/230 (30%), Gaps = 67/230 (29%)

Query: 18  FLHDCSMNQSNHSNKLNLEEYGFKKRR-----------GPSKQPLRLTLRNAIPKEYYES 66
           ++ D S N +     +N E  G  KRR               +           +  Y  
Sbjct: 76  YIEDHSGNGT----FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDDQSVYPK 131

Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--------IQCQGASKSFMA 118
            L+  D + +   +G G+   V           VAI+++S         +    + +   
Sbjct: 132 ALR--DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVET 189

Query: 119 ECKALKNICHRNLVRFI------------------------------------SIAIDVA 142
           E + LK + H  +++                                           + 
Sbjct: 190 EIEILKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQML 249

Query: 143 SALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEVS 189
            A+ YLH +    I+H D KP NVLL   + D    I DF  ++   E S
Sbjct: 250 LAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS 296

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 43/206 (20%), Positives = 69/206 (33%), Gaps = 52/206 (25%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS------IQCQGASKSFMAECKALKNIC 127
           +  +  IG G+   V      +    VAIK LS         + A      E   +K + 
Sbjct: 27  YQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRA----YRELVLMKCVN 82

Query: 128 HRNLVRFISIAIDVASALDY-------------LHH---------HCQEL---------- 155
           H+N++  +++     S  ++             L               L          
Sbjct: 83  HKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKH 142

Query: 156 -----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                I+H D KPSN+++ +D    I DF LAR        T         T  Y A + 
Sbjct: 143 LHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV-----TRYYRAPEV 197

Query: 211 DLGSEVSTNGDAYNYGILLLEMVTRR 236
            LG     N D ++ G ++ EM+   
Sbjct: 198 ILGMGYKENVDIWSVGCIMGEMIKGG 223

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 48/221 (21%), Positives = 73/221 (33%), Gaps = 71/221 (32%)

Query: 76  LINLIGVGSFDAVYQG-VFDLNRA----VVAIKVLSIQCQGASKS----FMAECKALKNI 126
               +G G+F  V +   F L +      VA+K+L      A        M+E K + ++
Sbjct: 50  FGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLK---STAHADEKEALMSELKIMSHL 106

Query: 127 -CHRNLVRF--------------------------------------------------- 134
             H N+V                                                     
Sbjct: 107 GQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDL 166

Query: 135 ISIAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ 193
           +  +  VA  + +L   +C    +H D    NVLL N   A IGDF LAR     SN   
Sbjct: 167 LHFSSQVAQGMAFLASKNC----IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSN-YI 221

Query: 194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
              N  R  + + A +       +   D ++YGILL E+ +
Sbjct: 222 VKGNA-RLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 261

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 22/105 (20%)

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           +   L+++H+     +++ D KP+N+LLD      I D  LA    + S     +S G  
Sbjct: 301 IILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLAC---DFSKKKPHASVG-- 352

Query: 201 RTIGYTALDYDLGSEVSTNGDAYN-------YGILLLEMVTRRKP 238
            T GY A       EV   G AY+        G +L +++    P
Sbjct: 353 -THGYMA------PEVLQKGVAYDSSADWFSLGCMLFKLLRGHSP 390

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 60/214 (28%)

Query: 20  HDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINL 79
           +  +  +  +  +    E  + +  GP  +            + Y+            ++
Sbjct: 53  NLLAEAKKLNDAQPKGTENLYFQSMGPEDELPDWAAAKEF-YQKYD----------PKDV 101

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSI--------QCQGASKSFMAECKALKNIC-HRN 130
           IG G    V + V        A+K++ +        Q +   ++   E   L+ +  H +
Sbjct: 102 IGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPH 161

Query: 131 LVRFI-------------------------------------SIAIDVASALDYLHHHCQ 153
           ++  I                                     SI   +  A+ +LH +  
Sbjct: 162 IITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANN- 220

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE 187
             I+H D KP N+LLD+++   + DF  +   + 
Sbjct: 221 --IVHRDLKPENILLDDNMQIRLSDFGFSCHLEP 252

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 29/139 (20%)

Query: 130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH------IGDFELAR 183
             V+   I+  +   LDY+H  C   I+H D KP NVL++            I D   A 
Sbjct: 131 IYVK--QISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNAC 186

Query: 184 F-RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM 242
           +  +  +N  Q+          Y + +  LG+      D ++   L+ E++T     DF+
Sbjct: 187 WYDEHYTNSIQTRE--------YRSPEVLLGAPWGCGADIWSTACLIFELITG----DFL 234

Query: 243 FEGD------LNLHNFARM 255
           FE D       +  + A++
Sbjct: 235 FEPDEGHSYTKDDDHIAQI 253

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 34/147 (23%), Positives = 52/147 (35%), Gaps = 44/147 (29%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRNLV 132
           L+  IG G+F  V      L    VAIK++    +      K F  E + +K + H N+V
Sbjct: 19  LLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFR-EVRIMKILNHPNIV 77

Query: 133 R-------------------------FIS------------IAIDVASALDYLHHHCQEL 155
           +                         ++                 + SA+ Y H      
Sbjct: 78  KLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKR--- 134

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELA 182
           I+H D K  N+LLD D+   I DF  +
Sbjct: 135 IVHRDLKAENLLLDADMNIKIADFGFS 161

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 42/231 (18%), Positives = 69/231 (29%), Gaps = 89/231 (38%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALK-----NI-- 126
           F  I LIG G F  V++    ++     IK +       ++    E KAL      NI  
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN----NEKAEREVKALAKLDHVNIVH 68

Query: 127 ---------------------------------CHR-NLVRFI--------------SIA 138
                                            C +  L ++I               + 
Sbjct: 69  YNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELF 128

Query: 139 IDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
             +   +DY+H      +++ D KPSN+ L +     IGDF L              ++G
Sbjct: 129 EQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVKIGDFGLVT---------SLKNDG 176

Query: 199 VRRT-IG---YTALDYDLGSEVSTNGDAYNY-------GILLLEMVTRRKP 238
            R    G   Y +       E   +   Y         G++L E++     
Sbjct: 177 KRTRSKGTLRYMS------PEQ-ISSQDYGKEVDLYALGLILAELLHVCDT 220

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 48/207 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNICHRN 130
           D F  I+ +G G+   V++     +  V+A K++ ++ + A     + E + L       
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92

Query: 131 LVRF---------ISI----------------------------AIDVASALDYLHHHCQ 153
           +V F         ISI                            +I V   L YL    +
Sbjct: 93  IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK 152

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS-NPTQSSSNGVRRTIGYTALDYDL 212
             I+H D KPSN+L++       G+ +L  F   VS     S +N    T  Y + +   
Sbjct: 153 --IMHRDVKPSNILVN-----SRGEIKLCDF--GVSGQLIDSMANSFVGTRSYMSPERLQ 203

Query: 213 GSEVSTNGDAYNYGILLLEMVTRRKPI 239
           G+  S   D ++ G+ L+EM   R PI
Sbjct: 204 GTHYSVQSDIWSMGLSLVEMAVGRYPI 230

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 48/223 (21%), Positives = 76/223 (34%), Gaps = 68/223 (30%)

Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALK 124
           +KA D + ++ +IG G+F  V        R V A+K+LS   +  +  S  F  E   + 
Sbjct: 66  MKAED-YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMA 124

Query: 125 NICHRNLVR----------------FIS------------IAIDVA--------SALDYL 148
                 +V+                ++             +    A         ALD +
Sbjct: 125 FANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAI 184

Query: 149 HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL 208
           H       +H D KP N+LLD      + DF             + +  G+ R    TA+
Sbjct: 185 HSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCM---------KMNKEGMVRC--DTAV 230

Query: 209 ---DYDLGSEV-STNGDAYNY---------GILLLEMVTRRKP 238
              DY +  EV  + G    Y         G+ L EM+    P
Sbjct: 231 GTPDY-ISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTP 272

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 32/123 (26%)

Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            V ++  Y+H+     I H D KPSN+L+D +    + DF  + +            +  
Sbjct: 159 SVLNSFSYIHNEKN--ICHRDVKPSNILMDKNGRVKLSDFGESEYMV----------DKK 206

Query: 200 RRTI-G---YTA-------LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN 248
            +   G   +           Y+ G++V    D ++ GI L  M     P    F   ++
Sbjct: 207 IKGSRGTYEFMPPEFFSNESSYN-GAKV----DIWSLGICLYVMFYNVVP----FSLKIS 257

Query: 249 LHN 251
           L  
Sbjct: 258 LVE 260

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 43/202 (21%), Positives = 67/202 (33%), Gaps = 47/202 (23%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRN 130
           F    ++G GSF  V            AIK+L    I  +        E   +  + H  
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 91

Query: 131 LVR------------FI-----------------SIAIDVA--------SALDYLHHHCQ 153
            V+            F                  S              SAL+YLH    
Sbjct: 92  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG- 150

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN-GVRRTIGYTALDYDL 212
             I+H D KP N+LL+ D+   I DF  A+     S   +++S  G   T  Y + +   
Sbjct: 151 --IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVG---TAQYVSPELLT 205

Query: 213 GSEVSTNGDAYNYGILLLEMVT 234
                 + D +  G ++ ++V 
Sbjct: 206 EKSACKSSDLWALGCIIYQLVA 227

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 51/266 (19%), Positives = 83/266 (31%), Gaps = 63/266 (23%)

Query: 27  SNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFD 86
              ++ L  +       R  S           +     +  +   + F  + L+G G+F 
Sbjct: 104 QTVADGLKKQAAAEMDFRSGSPSDNSGAEEMEVSLAKPKHRVTMNE-FEYLKLLGKGTFG 162

Query: 87  AVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRNLV----------- 132
            V            A+K+L    I  +      + E + L+N  H  L            
Sbjct: 163 KVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDR 222

Query: 133 ----------------------------RFISIAIDVASALDYLHHHCQELILHCDPKPS 164
                                       RF     ++ SALDYLH      +++ D K  
Sbjct: 223 LCFVMEYANGGELFFHLSRERVFSEDRARFY--GAEIVSALDYLHSEKN--VVYRDLKLE 278

Query: 165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA----LDYDLGSEVSTNG 220
           N++LD D    I DF L +   +     ++       T  Y A     D D G  V    
Sbjct: 279 NLMLDKDGHIKITDFGLCKEGIKDGATMKTFCG----TPEYLAPEVLEDNDYGRAV---- 330

Query: 221 DAYNYGILLLEMVTRRKPIDFMFEGD 246
           D +  G+++ EM+  R P    F   
Sbjct: 331 DWWGLGVVMYEMMCGRLP----FYNQ 352

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 45/218 (20%), Positives = 73/218 (33%), Gaps = 52/218 (23%)

Query: 62  EYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS------IQCQGASKS 115
           E  +S       +  +  IG G+   V      +    VAIK LS         + A   
Sbjct: 52  EVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRA--- 108

Query: 116 FMAECKALKNICHRNLVRFISIAIDVASALDY-------------LHH---------HCQ 153
              E   +K + H+N++  +++     +  ++             L              
Sbjct: 109 -YRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMS 167

Query: 154 EL---------------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNG 198
            L               I+H D KPSN+++ +D    I DF LAR        T      
Sbjct: 168 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV-- 225

Query: 199 VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRR 236
              T  Y A +  LG     N D ++ G ++ EMV  +
Sbjct: 226 ---TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 39/152 (25%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--IQCQGASKSFMAECKALKNICH 128
              +     +G G++ +V   +   +   VAIK LS   Q +  +K    E   LK++ H
Sbjct: 23  PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQH 82

Query: 129 RNLVRFISIAIDVASALDY-------------LHH---------HCQEL----------- 155
            N++  + +    +S  ++             L             Q L           
Sbjct: 83  ENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYI 142

Query: 156 ----ILHCDPKPSNVLLDNDLFAHIGDFELAR 183
               ++H D KP N+ ++ D    I DF LAR
Sbjct: 143 HSAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 41/145 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRNLVRF 134
           L+  +G G++  V   V  +    VA+K++ + +     ++   E    K + H N+V+F
Sbjct: 11  LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 135 I-------SIAI----------------------DVA--------SALDYLHHHCQELIL 157
                      +                        A        + + YLH      I 
Sbjct: 71  YGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GIT 127

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELA 182
           H D KP N+LLD      I DF LA
Sbjct: 128 HRDIKPENLLLDERDNLKISDFGLA 152

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 44/226 (19%), Positives = 74/226 (32%), Gaps = 74/226 (32%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNIC-HR 129
           +    +  IG G++ +V + V   +  ++A+K +         K  + +   +       
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81

Query: 130 NLVRF----------------------------------------IS-IAIDVASALDYL 148
            +V+F                                        +  I +    AL++L
Sbjct: 82  YIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL 141

Query: 149 HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ-SSSNGVRRTIG--- 204
             + +  I+H D KPSN+LLD       G+ +L  F   +S   Q   S    R  G   
Sbjct: 142 KENLK--IIHRDIKPSNILLDRS-----GNIKLCDF--GIS--GQLVDSIAKTRDAGCRP 190

Query: 205 YTALDYDLGSEV---STNGDAYNY-------GILLLEMVTRRKPID 240
           Y A       E    S +   Y+        GI L E+ T R P  
Sbjct: 191 YMA------PERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYP 230

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 44/231 (19%), Positives = 73/231 (31%), Gaps = 67/231 (29%)

Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALK 124
           L+  D F ++ +IG G+F  V          V A+K+++   +  +G    F  E   L 
Sbjct: 58  LQRDD-FEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLV 116

Query: 125 NICHRNLVR----------------FIS-----------------------IAIDVASAL 145
           N   R + +                +                         +A ++  A+
Sbjct: 117 NGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLA-EIVMAI 175

Query: 146 DYLHHHCQELILHCDPKPSNVLLDNDLFAHI--GDFELARFRQEVSNPTQSSSNG----- 198
           D +H       +H D KP N+LLD     HI   DF      +         + G     
Sbjct: 176 DSVHRLG---YVHRDIKPDNILLDRC--GHIRLADFGSCLKLRADGTVRSLVAVGTPDYL 230

Query: 199 ---VRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
              + + +G        G E     D +  G+   EM   + P    F  D
Sbjct: 231 SPEILQAVGGGPGTGSYGPEC----DWWALGVFAYEMFYGQTP----FYAD 273

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 46/261 (17%), Positives = 87/261 (33%), Gaps = 71/261 (27%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRN 130
           F ++ +IG G+F  V          V A+K+L+   +  +  +  F  E   L N   + 
Sbjct: 76  FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKW 135

Query: 131 LVR----------------FIS-----------------------IAIDVASALDYLHHH 151
           +                  +                         +A ++  A+D +H  
Sbjct: 136 ITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLA-EMVIAIDSVHQL 194

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
                +H D KP N+L+D +    + DF       E      S + G   T  Y + +  
Sbjct: 195 H---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVG---TPDYISPEIL 248

Query: 212 LGSEVSTNG-----DAYNYGILLLEMVTRRKPIDFMFEGDLN-------LHNFARMAFPN 259
              E          D ++ G+ + EM+    P    F  +         +++  R  FP 
Sbjct: 249 QAMEGGKGRYGPECDWWSLGVCMYEMLYGETP----FYAESLVETYGKIMNHKERFQFPT 304

Query: 260 RVMDI----VNLV--LLNDNK 274
           +V D+     +L+  L+   +
Sbjct: 305 QVTDVSENAKDLIRRLICSRE 325

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 41/145 (28%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRNLVRF 134
           L+  +G G++  V   V  +    VA+K++ + +     ++   E    K + H N+V+F
Sbjct: 11  LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKF 70

Query: 135 I-------SIAI----------------------DVA--------SALDYLHHHCQELIL 157
                      +                        A        + + YLH      I 
Sbjct: 71  YGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GIT 127

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELA 182
           H D KP N+LLD      I DF LA
Sbjct: 128 HRDIKPENLLLDERDNLKISDFGLA 152

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 43/226 (19%), Positives = 73/226 (32%), Gaps = 73/226 (32%)

Query: 78  NLIGVGSF-DAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL-KNICHRNLVR-- 133
            ++G GS    V+QG F   R V A+K + I         + E K L ++  H N++R  
Sbjct: 21  KILGYGSSGTVVFQGSFQ-GRPV-AVKRMLIDFC---DIALMEIKLLTESDDHPNVIRYY 75

Query: 134 -------FISIAI----------------------------------DVASALDYLHHHC 152
                  F+ IA+                                   +AS + +LH   
Sbjct: 76  CSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK 135

Query: 153 QELILHCDPKPSNVLLDNDLFAH-------------IGDFELARFRQEVSNPTQSSSNGV 199
              I+H D KP N+L+                    I DF L +      +  +++ N  
Sbjct: 136 ---IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNP 192

Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNY-------GILLLEMVTRRKP 238
             T G+ A +    S                  G +   ++++ K 
Sbjct: 193 SGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKH 238

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 40/150 (26%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--IQCQGASKSFMAECKALKNICHRNL 131
           +  +  +G G++ AV   V     A VAIK L    Q +  +K    E + LK++ H N+
Sbjct: 27  YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV 86

Query: 132 VRFISIAIDVASALDY-------------LHH----------HCQEL------------- 155
           +  + +     +  D+             L              Q L             
Sbjct: 87  IGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHA 146

Query: 156 --ILHCDPKPSNVLLDNDLFAHIGDFELAR 183
             I+H D KP N+ ++ D    I DF LAR
Sbjct: 147 AGIIHRDLKPGNLAVNEDCELKILDFGLAR 176

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 50/164 (30%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--------IQCQGASKSFMAECKA 122
            D + +   +G G+   V           VAIK++S         +    + +   E + 
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEI 68

Query: 123 LKNICHRNLVRFI------------------------------------SIAIDVASALD 146
           LK + H  +++                                           +  A+ 
Sbjct: 69  LKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQ 128

Query: 147 YLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQE 187
           YLH +    I+H D KP NVLL   + D    I DF  ++   E
Sbjct: 129 YLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGE 169

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 46/215 (21%), Positives = 73/215 (33%), Gaps = 54/215 (25%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICHRN 130
           F    ++G G F  V          + A K L    I+ +      + E + L+ +  R 
Sbjct: 186 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF 245

Query: 131 LV---------------------------------------RFISIAIDVASALDYLHHH 151
           +V                                       R +  A ++   L+ LH  
Sbjct: 246 VVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH-- 303

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
            +E I++ D KP N+LLD+     I D  LA    E    T     G   T+GY A +  
Sbjct: 304 -RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE--GQTIKGRVG---TVGYMAPEVV 357

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
                + + D +  G LL EM+  + P    F+  
Sbjct: 358 KNERYTFSPDWWALGCLLYEMIAGQSP----FQQR 388

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 38/162 (23%), Positives = 54/162 (33%), Gaps = 58/162 (35%)

Query: 76  LINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQGASKS-FMAECKALKNICHR 129
           LI  +G G+F  VY+G       D +   VA+K L   C    +  F+ E   +    H+
Sbjct: 34  LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQ 93

Query: 130 NLVRF--------------------------------------------ISIAIDVASAL 145
           N+VR                                             + +A D+A   
Sbjct: 94  NIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGC 153

Query: 146 DYL-HHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELAR 183
            YL  +H     +H D    N LL        A IGDF +AR
Sbjct: 154 QYLEENHF----IHRDIAARNCLLTCPGPGRVAKIGDFGMAR 191

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 32/148 (21%), Positives = 48/148 (32%), Gaps = 43/148 (29%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
            +  IG G+F         L + +VA+K +        ++   E    +++ H N+VRF 
Sbjct: 24  FVKDIGSGNFGVARLMRDKLTKELVAVKYIERG-AAIDENVQREIINHRSLRHPNIVRFK 82

Query: 136 -------SIAI----------------------DVA--------SALDYLHHHCQELILH 158
                   +AI                      D A        S + Y H      I H
Sbjct: 83  EVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQ---ICH 139

Query: 159 CDPKPSNVLLDNDLFAH--IGDFELARF 184
            D K  N LLD        I DF  ++ 
Sbjct: 140 RDLKLENTLLDGSPAPRLKICDFGYSKS 167

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 58/211 (27%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSF---MAECKALKNICH 128
           D F  I  +G GSF  V       +    A+K+L  Q     K     + E + L+ +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 129 RNLVR----------------FIS---------------------IAIDVASALDYLHHH 151
             LV+                +++                      A  +    +YLH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL 160

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---- 207
               +++ D KP N+L+D   +  + DF  A+    V   T +    +  T    A    
Sbjct: 161 D---LIYRDLKPENLLIDQQGYIQVTDFGFAK---RVKGRTWT----LCGTPEALAPEII 210

Query: 208 LDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           L       V    D +  G+L+ EM     P
Sbjct: 211 LSKGYNKAV----DWWALGVLIYEMAAGYPP 237

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 38/162 (23%), Positives = 54/162 (33%), Gaps = 58/162 (35%)

Query: 76  LINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQGASKS-FMAECKALKNICHR 129
           LI  +G G+F  VY+G       D +   VA+K L   C    +  F+ E   +    H+
Sbjct: 75  LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQ 134

Query: 130 NLVRF--------------------------------------------ISIAIDVASAL 145
           N+VR                                             + +A D+A   
Sbjct: 135 NIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGC 194

Query: 146 DYL-HHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELAR 183
            YL  +H     +H D    N LL        A IGDF +AR
Sbjct: 195 QYLEENHF----IHRDIAARNCLLTCPGPGRVAKIGDFGMAR 232

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 126 ICHRNLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR 185
           +   +L+ +   +  VA  +++L        +H D    N+LL       I DF LAR  
Sbjct: 190 LTLEHLICY---SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 243

Query: 186 QEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT 234
            +  +  +      R  + + A +       +   D +++G+LL E+ +
Sbjct: 244 YKDPDYVRKG--DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 290

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 48/225 (21%), Positives = 73/225 (32%), Gaps = 67/225 (29%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH 128
           D F    ++G G F  V+         + A K L+   ++ +   +  M E K L  +  
Sbjct: 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHS 244

Query: 129 RNLV-------------------------------------------RFISIAIDVASAL 145
           R +V                                            F      + S L
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFY--TAQIVSGL 302

Query: 146 DYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY 205
           ++LH      I++ D KP NVLLD+D    I D  LA   +     T+  +     T G+
Sbjct: 303 EHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAG----TPGF 355

Query: 206 TA----LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            A    L  +    V    D +  G+ L EM+  R P    F   
Sbjct: 356 MAPELLLGEEYDFSV----DYFALGVTLYEMIAARGP----FRAR 392

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 62/166 (37%)

Query: 76  LINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN 130
           L   +G G+F  V+         + ++ +VA+K L    + A + F  E + L  + H++
Sbjct: 45  LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQH 104

Query: 131 LVRFI----------------------------------------------------SIA 138
           +VRF                                                     ++A
Sbjct: 105 IVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVA 164

Query: 139 IDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
             VA+ + YL   H     +H D    N L+   L   IGDF ++R
Sbjct: 165 SQVAAGMVYLAGLHF----VHRDLATRNCLVGQGLVVKIGDFGMSR 206

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 63/167 (37%)

Query: 76  LINLIGVGSFDAVYQG-----VFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN 130
           L   +G G+F  V+           ++ +VA+K L      A K F  E + L N+ H +
Sbjct: 19  LKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEH 78

Query: 131 LVRFI-----------------------------------------------------SI 137
           +V+F                                                       I
Sbjct: 79  IVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHI 138

Query: 138 AIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
           A  +AS + YL   H     +H D    N L+  +L   IGDF ++R
Sbjct: 139 ASQIASGMVYLASQHF----VHRDLATRNCLVGANLLVKIGDFGMSR 181

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 53/179 (29%)

Query: 46  PSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVL 105
               P  + ++     +YY+          ++  +G G+F  V++ V      V   K +
Sbjct: 35  KKYVPQPVEVKQGSVYDYYD----------ILEELGSGAFGVVHRCVEKATGRVFVAKFI 84

Query: 106 SIQCQGASKSFMAECKALKNICHRNLVRF------------------------------- 134
           +        +   E   +  + H  L+                                 
Sbjct: 85  NTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDY 144

Query: 135 -------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH--IGDFELARF 184
                  I+        L ++H H    I+H D KP N++ +    +   I DF LA  
Sbjct: 145 KMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATK 200

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 38/148 (25%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICHRNLV 132
           +  ++ IG G++  V     +LN+  VAIK +S  + Q   +  + E K L    H N++
Sbjct: 29  YTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENII 88

Query: 133 RFISIAI--------DVASALDY----LHH----------HCQEL--------------- 155
               I          DV    D     L+           H                   
Sbjct: 89  GINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSAN 148

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELAR 183
           +LH D KPSN+LL+      I DF LAR
Sbjct: 149 VLHRDLKPSNLLLNTTCDLKICDFGLAR 176

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 39/224 (17%), Positives = 67/224 (29%), Gaps = 71/224 (31%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS-KSFMAECKALKNIC-HR 129
           D    I  +G G++  V +     +  ++A+K +         K  + +           
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 130 NLVRF---------ISI-------------------------------AIDVASALDYLH 149
             V F         + I                               A+ +  AL++LH
Sbjct: 67  FTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH 126

Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF---RQEVSNPTQSSSNGVRRTIGYT 206
                 ++H D KPSNVL++       G  ++  F      V +  +    G      Y 
Sbjct: 127 SKLS--VIHRDVKPSNVLINAL-----GQVKMCDFGISGYLVDDVAKDIDAG---CKPYM 176

Query: 207 ALDYDLGSEV---STNGDAYNY-------GILLLEMVTRRKPID 240
           A       E      N   Y+        GI ++E+   R P D
Sbjct: 177 A------PERINPELNQKGYSVKSDIWSLGITMIELAILRFPYD 214

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 42/283 (14%), Positives = 99/283 (34%), Gaps = 66/283 (23%)

Query: 50  PLRLTL-----RNAIPK-EYY-----ESLLKATDGFPLINLIGVGSFDAVYQ--GVFDLN 96
           P RL++     R+ +   + +     + L    +    +N++    +  ++    VF  +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPS 384

Query: 97  RAVVAI--KVLSIQCQGASKS----FMAEC--KAL--KNICHRNLVRFISIAIDVASALD 146
                I   +LS+      KS     + +    +L  K     + +   SI +++   L+
Sbjct: 385 ---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKLE 440

Query: 147 ---YLHHHCQELILH-------CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSS 196
               LH   + ++ H                LD   ++HIG   L               
Sbjct: 441 NEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHP------ERM 490

Query: 197 NGVRRTIGYTALDYD-LGSEVSTNGDAYNYGILLLEMVTR----RKPI---DFMFEGDLN 248
              R    +  LD+  L  ++  +  A+N    +L  + +    +  I   D  +E  +N
Sbjct: 491 TLFRMV--F--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 249 -LHNFARMAFPNRV----MDIVNLVLLNDNKVLAGTNSNMLRK 286
            + +F      N +     D++ + L+ +++ +       +++
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 37/252 (14%), Positives = 81/252 (32%), Gaps = 67/252 (26%)

Query: 145 LDY----LHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF-RQEVSNPTQSSS--N 197
           +D+      +  ++++   +      + + D    + D   +   ++E+ +   S    +
Sbjct: 7   MDFETGEHQYQYKDILSVFEDA---FVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 198 GVRRTIGYTALDYDLGSEVST----NGDAYNYGILLLEMVTR-RKP--IDFMFEGDLN-L 249
           G  R    T L      E+           NY  L+  + T  R+P  +  M+    + L
Sbjct: 63  GTLRLFW-TLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 250 HN----FARMAFPNRVMDIVNL--VLLNDNK---------------VLAGTNSNMLRKTK 288
           +N    FA+     R+   + L   LL                    +A    ++    K
Sbjct: 120 YNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYK 175

Query: 289 MNSRLECLIFMVRIG------------------AACSMGSSQDRM-NVPNAVHDLQSVNN 329
           +  +++  IF + +                      +  S  D   N+   +H +Q+   
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 330 ILLPETVFK-SL 340
            LL    ++  L
Sbjct: 236 RLLKSKPYENCL 247

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 34/174 (19%), Positives = 52/174 (29%), Gaps = 73/174 (41%)

Query: 76  LINLIGVGSFDAVYQGV-------FDLNRAVVAIKVLSIQCQGASKS----FMAECKALK 124
           L   +G G+F  V                  VA+K+L      A++      ++E + +K
Sbjct: 73  LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLK---SDATEKDLSDLISEMEMMK 129

Query: 125 NI-CHRNLVRFI------------------------------------------------ 135
            I  H+N++  +                                                
Sbjct: 130 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLS 189

Query: 136 -----SIAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                S A  VA  ++YL    C    +H D    NVL+  D    I DF LAR
Sbjct: 190 SKDLVSCAYQVARGMEYLASKKC----IHRDLAARNVLVTEDNVMKIADFGLAR 239

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 45/159 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICH 128
            + + ++ ++G GSF  V +    + +   A+KV++        + + + E + LK + H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
            N+++                                        I   V S + Y+H H
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH 140

Query: 152 CQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQE 187
               I+H D KP N+LL   + D    I DF L+   Q+
Sbjct: 141 N---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 48/157 (30%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS------IQCQGASKSFMAECKALK 124
            + +  ++ +G G++ +V           VA+K LS      I  +        E + LK
Sbjct: 28  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRT----YRELRLLK 83

Query: 125 NICHRNLVRFISIAIDVASALDY-------------LHH--HCQEL-------------- 155
           ++ H N++  + +     S  ++             L++   CQ+L              
Sbjct: 84  HMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILR 143

Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                    I+H D KPSN+ ++ D    I DF LAR
Sbjct: 144 GLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 45/159 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICH 128
           +D + +   +G G+F  V + V        A K+++ +       +    E +  + + H
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
            N+VR                                            +  ++ Y H +
Sbjct: 65  PNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN 124

Query: 152 CQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQE 187
               I+H + KP N+LL          + DF LA    +
Sbjct: 125 ---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 49/225 (21%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHR 129
           +  F L +L+G G++  V          +VAIK +        +   + E K LK+  H 
Sbjct: 10  SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHE 69

Query: 130 NLVRFISIAI--------DVASALDY----LHH----------HCQEL------------ 155
           N++   +I          +V    +     LH           H Q              
Sbjct: 70  NIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLH 129

Query: 156 ---ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              ++H D KPSN+L++++    + DF LAR   E +      +      + + A  +  
Sbjct: 130 GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYR 189

Query: 213 GSEVSTNGDAYNYGI-------LLLEMVTRRKPIDFMFEGDLNLH 250
             EV      Y+  +       +L E+   R+PI   F G    H
Sbjct: 190 APEVMLTSAKYSRAMDVWSCGCILAELFL-RRPI---FPGRDYRH 230

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 33/145 (22%), Positives = 44/145 (30%), Gaps = 43/145 (29%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI---- 135
           IG GS+  V   V    R   A K +          F  E + +K++ H N++R      
Sbjct: 17  IGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE 76

Query: 136 ---------------------------------SIAIDVASALDYLHHHCQELILHCDPK 162
                                             I  DV SA+ Y H      + H D K
Sbjct: 77  DNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLK 133

Query: 163 PSNVLLDN---DLFAHIGDFELARF 184
           P N L      D    + DF LA  
Sbjct: 134 PENFLFLTDSPDSPLKLIDFGLAAR 158

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 50/206 (24%)

Query: 23  SMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGV 82
               +   +    +      ++   ++    + +         S  +  D + + +LIG 
Sbjct: 4   HEAAAAQQHNSGTQHTVSGSQQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHLIGT 63

Query: 83  GSFDAVYQGVFDLNRAVVAIKVLS------IQCQGASKSFMAECKALKNICHRNLVRFIS 136
           GS+  V +    L + VVAIK +       I C+   +    E   L  + H ++V+ + 
Sbjct: 64  GSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILR----EIAILNRLNHDHVVKVLD 119

Query: 137 IAIDVASALDY-------------LHH-----------HCQEL---------------IL 157
           I +       +                           H + L               IL
Sbjct: 120 I-VIPKDVEKFDELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGIL 178

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELAR 183
           H D KP+N L++ D    + DF LAR
Sbjct: 179 HRDLKPANCLVNQDCSVKVCDFGLAR 204

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 46/160 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNIC 127
           +D +    ++G GSF  V      +     A+KV+S   ++ +   +S + E + LK + 
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 128 HRNLVRFI-------------------------------------SIAIDVASALDYLHH 150
           H N+++                                        I   V S + Y+H 
Sbjct: 85  HPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHK 144

Query: 151 HCQELILHCDPKPSNVLLDN---DLFAHIGDFELARFRQE 187
           +    I+H D KP N+LL++   D    I DF L+   + 
Sbjct: 145 NK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 181

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/174 (17%), Positives = 51/174 (29%), Gaps = 73/174 (41%)

Query: 76  LINLIGVGSFDAVYQGV-------FDLNRAVVAIKVLSIQCQGASKS----FMAECKALK 124
           L   +G G+F  V                  VA+K+L      A++      ++E + +K
Sbjct: 39  LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLK---DDATEKDLSDLVSEMEMMK 95

Query: 125 NI-CHRNLVRFI------------------------------------------------ 135
            I  H+N++  +                                                
Sbjct: 96  MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT 155

Query: 136 -----SIAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                S    +A  ++YL    C    +H D    NVL+  +    I DF LAR
Sbjct: 156 FKDLVSCTYQLARGMEYLASQKC----IHRDLAARNVLVTENNVMKIADFGLAR 205

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 45/170 (26%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRFI-- 135
           ++G G+   V   +  +     A+K++  Q          E + L     HRN++  I  
Sbjct: 20  VLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEF 79

Query: 136 -----------------------------------SIAIDVASALDYLHHHCQELILHCD 160
                                               +  DVASALD+LH+     I H D
Sbjct: 80  FEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKG---IAHRD 136

Query: 161 PKPSNVLL---DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
            KP N+L    +      I DF+L    +  +      S     T   +A
Sbjct: 137 LKPENILCEHPNQVSPVKICDFDLGSGIKL-NGDCSPISTPELLTPCGSA 185

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 44/174 (25%)

Query: 45  GPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV 104
           G S    + T    I  + Y+   +  D    +  +G G+   V++  F     V+A+K 
Sbjct: 1   GSSGSSGKQTGYLTIGGQRYQ--AEIND-LENLGEMGSGTCGQVWKMRFRKTGHVIAVKQ 57

Query: 105 LSIQCQGAS-KSFMAECKALKNIC-HRNLVRF---------ISI---------------- 137
           +         K  + +   +        +V+          + I                
Sbjct: 58  MRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKRM 117

Query: 138 ------------AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF 179
                        + +  AL YL    +  ++H D KPSN+LLD      + DF
Sbjct: 118 QGPIPERILGKMTVAIVKALYYLKE--KHGVIHRDVKPSNILLDERGQIKLCDF 169

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 69/174 (39%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMA-------------- 118
           L + IG GS+  V     + +    A+KVLS   +  Q                      
Sbjct: 17  LKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQP 76

Query: 119 ---------ECKALKNICHRNLVRFISIAIDVA--------------------------- 142
                    E   LK + H N+V+ + + +D                             
Sbjct: 77  RGPIEQVYQEIAILKKLDHPNVVKLVEV-LDDPNEDHLYMVFELVNQGPVMEVPTLKPLS 135

Query: 143 ------------SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF 184
                         ++YLH+     I+H D KPSN+L+  D    I DF ++  
Sbjct: 136 EDQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNE 186

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 31/174 (17%), Positives = 50/174 (28%), Gaps = 73/174 (41%)

Query: 76  LINLIGVGSFDAVYQGV-------FDLNRAVVAIKVLSIQCQGASKS----FMAECKALK 124
           L   +G G F  V                  VA+K+L      A++      ++E + +K
Sbjct: 85  LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLK---DDATEKDLSDLVSEMEMMK 141

Query: 125 NI-CHRNLVRFI------------------------------------------------ 135
            I  H+N++  +                                                
Sbjct: 142 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMT 201

Query: 136 -----SIAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
                S    +A  ++YL    C    +H D    NVL+  +    I DF LAR
Sbjct: 202 FKDLVSCTYQLARGMEYLASQKC----IHRDLAARNVLVTENNVMKIADFGLAR 251

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 33/198 (16%), Positives = 57/198 (28%), Gaps = 62/198 (31%)

Query: 39  GFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRA 98
           G     G     L +   + + ++ YE          L  +IG G F  V + +      
Sbjct: 1   GSPGISGGGGGILDMADDDVLFEDVYE----------LCEVIGKGPFSVVRRCINRETGQ 50

Query: 99  VVAIKV-----LSIQCQGASKSFMAECKALKNICHRNLVRFI------------------ 135
             A+K+      +     +++    E      + H ++V  +                  
Sbjct: 51  QFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDG 110

Query: 136 -----------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLL---D 169
                                       +  AL Y H +    I+H D KP  VLL   +
Sbjct: 111 ADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKE 167

Query: 170 NDLFAHIGDFELARFRQE 187
           N     +G F +A    E
Sbjct: 168 NSAPVKLGGFGVAIQLGE 185

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 31/180 (17%), Positives = 53/180 (29%), Gaps = 52/180 (28%)

Query: 46  PSKQPLR-LTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKV 104
           P+    R +T +      +Y              ++G G F  V++         +A K+
Sbjct: 70  PAPFDHRIVTAKQGAVNSFYT--------VSKTEILGGGRFGQVHKCEETATGLKLAAKI 121

Query: 105 LSIQCQGASKSFMAECKALKNICHRNLVRF------------------------------ 134
           +  +     +    E   +  + H NL++                               
Sbjct: 122 IKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDES 181

Query: 135 --------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHI--GDFELARF 184
                   I     +   + ++H      ILH D KP N+L  N     I   DF LAR 
Sbjct: 182 YNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARR 238

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 45/156 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICH 128
           T+ + L   +G G+F  V + V  L     A  +++ +       +    E +  + + H
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH 69

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
            N+VR                                            +  A+ + H  
Sbjct: 70  PNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQM 129

Query: 152 CQELILHCDPKPSNVLL---DNDLFAHIGDFELARF 184
               ++H + KP N+LL          + DF LA  
Sbjct: 130 G---VVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 23/198 (11%), Positives = 53/198 (26%), Gaps = 53/198 (26%)

Query: 27  SNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFD 86
                 ++     +         P  + +++    ++Y+          +   +G G+F 
Sbjct: 122 VRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLDHYD----------IHEELGTGAFG 171

Query: 87  AVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------ 134
            V++          A K +    +   ++   E + +  + H  LV              
Sbjct: 172 VVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVM 231

Query: 135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL 168
                                     +     V   L ++H +     +H D KP N++ 
Sbjct: 232 IYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMF 288

Query: 169 DNDLFAHI--GDFELARF 184
                  +   DF L   
Sbjct: 289 TTKRSNELKLIDFGLTAH 306

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 45/159 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICH 128
           +D + +   +G G+F  V + V        A K+++ +       +    E +  + + H
Sbjct: 28  SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 87

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
            N+VR                                            +  ++ Y H +
Sbjct: 88  PNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN 147

Query: 152 CQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQE 187
               I+H + KP N+LL          + DF LA    +
Sbjct: 148 ---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 183

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 48/223 (21%), Positives = 75/223 (33%), Gaps = 79/223 (35%)

Query: 76  LINLIGVGSFDAVYQGVFDLN--RAVVAIKVLSIQCQGASKS----FMAECKALKNI-CH 128
             ++IG G+F  V +     +  R   AIK +    + ASK     F  E + L  +  H
Sbjct: 29  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMK---EYASKDDHRDFAGELEVLCKLGHH 85

Query: 129 RNLVRFI----------------------------------------------------- 135
            N++  +                                                     
Sbjct: 86  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 145

Query: 136 SIAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
             A DVA  +DYL         +H D    N+L+  +  A I DF L+R           
Sbjct: 146 HFAADVARGMDYLSQKQF----IHRDLAARNILVGENYVAKIADFGLSR-----GQEVYV 196

Query: 195 SSNGVRRTIGYTA---LDYDLGSEVSTNGDAYNYGILLLEMVT 234
                R  + + A   L+Y   S  +TN D ++YG+LL E+V+
Sbjct: 197 KKTMGRLPVRWMAIESLNY---SVYTTNSDVWSYGVLLWEIVS 236

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 48/208 (23%)

Query: 20  HDCSMNQSNHSNKLNLEEYGFKKRRGPSKQPLRLTLRNAIPKEYYESLLKATDGFPLINL 79
           H    +  +   +    +         +     L     I     ++L   +D F + + 
Sbjct: 4   HHHHSSGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDAL---SDFFEVESE 60

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI---- 135
           +G G+   VY+      +   A+K   ++     K    E   L  + H N+++      
Sbjct: 61  LGRGATSIVYRCKQKGTQKPYALK--VLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFE 118

Query: 136 ---------------------------------SIAIDVASALDYLHHHCQELILHCDPK 162
                                                 +  A+ YLH +    I+H D K
Sbjct: 119 TPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENG---IVHRDLK 175

Query: 163 PSNVLL---DNDLFAHIGDFELARFRQE 187
           P N+L      D    I DF L++  + 
Sbjct: 176 PENLLYATPAPDAPLKIADFGLSKIVEH 203

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 45/156 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICH 128
           ++ +  +  +G G++  V      +     AIK++        ++   + E   LK + H
Sbjct: 36  SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDH 95

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
            N+++                                        I   V S + YLH H
Sbjct: 96  PNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH 155

Query: 152 CQELILHCDPKPSNVLLDN---DLFAHIGDFELARF 184
               I+H D KP N+LL++   D    I DF L+  
Sbjct: 156 N---IVHRDLKPENLLLESKEKDALIKIVDFGLSAV 188

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 50/194 (25%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS------IQCQGASKSFMAECKALK 124
            D + + +LIG GS+  VY          VAIK ++      I C+      + E   L 
Sbjct: 25  PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRI----LREITILN 80

Query: 125 NICHRNLVRFISIAI--------DVASALDY----LHH-----------HCQEL------ 155
            +    ++R   + I        ++   L+     L             H + +      
Sbjct: 81  RLKSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLL 140

Query: 156 ---------ILHCDPKPSNVLLDNDLFAHIGDFELAR--FRQEVSNPTQSSSNGVRRTIG 204
                    I+H D KP+N LL+ D    + DF LAR    ++ +N              
Sbjct: 141 GENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPH 200

Query: 205 YTALDYDLGSEVST 218
              L   L S V T
Sbjct: 201 NKNLKKQLTSHVVT 214

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 45/156 (28%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICH 128
            + + ++ ++G GSF  V +    + +   A+KV++        + + + E + LK + H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
            N+++                                        I   V S + Y+H H
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH 140

Query: 152 CQELILHCDPKPSNVLLDN-DLFAHI--GDFELARF 184
               I+H D KP N+LL++ +    I   DF L+  
Sbjct: 141 N---IVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 31/171 (18%), Positives = 45/171 (26%), Gaps = 70/171 (40%)

Query: 76  LINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQGASKS----FMAECKALKNI 126
            +  +G   F  VY+G             VAIK L      A       F  E      +
Sbjct: 13  FMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLK---DKAEGPLREEFRHEAMLRARL 69

Query: 127 CHRNLVRFI--------------------------------------------------- 135
            H N+V  +                                                   
Sbjct: 70  QHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPD 129

Query: 136 --SIAIDVASALDYL-HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
              +   +A+ ++YL  HH     +H D    NVL+ + L   I D  L R
Sbjct: 130 FVHLVAQIAAGMEYLSSHHV----VHKDLATRNVLVYDKLNVKISDLGLFR 176

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 47/157 (29%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           +  +  +G G    V+  V +     VAIK + +    + K  + E K ++ + H N+V+
Sbjct: 13  YMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVK 72

Query: 134 FISI--------AIDVASALDY-------------LHH----------HCQEL------- 155
              I          DV S  +              L +          H +         
Sbjct: 73  VFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRG 132

Query: 156 --------ILHCDPKPSNVLLD-NDLFAHIGDFELAR 183
                   +LH D KP+N+ ++  DL   IGDF LAR
Sbjct: 133 LKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLAR 169

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 46/219 (21%), Positives = 73/219 (33%), Gaps = 59/219 (26%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH 128
           + F  + L+G G+F  V            A+K+L    I  +      + E + L+N  H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 129 RNLVR----------------FIS---------------------IAIDVASALDYLHHH 151
             L                  + +                        ++ SAL+YLH  
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR 124

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA---- 207
               +++ D K  N++LD D    I DF L +           +  G   T  Y A    
Sbjct: 125 D---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATM-KTFCG---TPEYLAPEVL 177

Query: 208 LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
            D D G  V    D +  G+++ EM+  R P    F   
Sbjct: 178 EDNDYGRAV----DWWGLGVVMYEMMCGRLP----FYNQ 208

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 49/209 (23%), Positives = 73/209 (34%), Gaps = 58/209 (27%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSF---MAECKALKNICH-- 128
           F ++  +G GSF  V+      N    A+KVL  +     K       E   L  + H  
Sbjct: 8   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF 67

Query: 129 ------------------------------RNLVRFISI-----AIDVASALDYLHHHCQ 153
                                         R   RF +      A +V  AL+YLH    
Sbjct: 68  IIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD- 126

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA----LD 209
             I++ D KP N+LLD +    I DF  A+    V + T +    +  T  Y A      
Sbjct: 127 --IIYRDLKPENILLDKNGHIKITDFGFAK---YVPDVTYT----LCGTPDYIAPEVVST 177

Query: 210 YDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
                 +    D +++GIL+ EM+    P
Sbjct: 178 KPYNKSI----DWWSFGILIYEMLAGYTP 202

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 67/231 (29%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS------IQCQGASKSFMAECKALKNIC 127
           + L+  +G G++  V++ +      VVA+K +          Q        E   L  + 
Sbjct: 11  YELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRT----FREIMILTELS 66

Query: 128 -HRNLVRFISIAI-----DVASALDY----LHH----------HCQEL------------ 155
            H N+V  +++       DV    DY    LH           H Q +            
Sbjct: 67  GHENIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLH 126

Query: 156 ---ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
              +LH D KPSN+LL+ +    + DF L+R    +   T +    +         D  +
Sbjct: 127 SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPI 186

Query: 213 GSE-VST----------NGDAYNYGI-------LLLEMVTRRKPIDFMFEG 245
            ++ V+T              Y  GI       +L E++   KPI   F G
Sbjct: 187 LTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILC-GKPI---FPG 233

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS 189
             ++     I++  AL+YL       + H D KP N+LLD+  F             +  
Sbjct: 137 EDIK--LYCIEILKALNYLRKMS---LTHTDLKPENILLDDPYFEKSLITVRRVTDGKKI 191

Query: 190 NPTQSSSNGVR 200
              ++ S G++
Sbjct: 192 QIYRTKSTGIK 202

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           +  AL++LH      I++ D K  N+LLD++    + DF L++              G  
Sbjct: 168 IVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCG-- 222

Query: 201 RTIGYTA------LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR 254
            TI Y A       D      V    D ++ G+L+ E++T   P    F  D   ++ A 
Sbjct: 223 -TIEYMAPDIVRGGDSGHDKAV----DWWSLGVLMYELLTGASP----FTVDGEKNSQAE 273

Query: 255 M 255
           +
Sbjct: 274 I 274

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 56/167 (33%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS-------------IQCQGASKSFM 117
            + +  +  +G G++  V         +  AIKV+                 +   +   
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIY 94

Query: 118 AECKALKNICHRNLVRFI-------------------------------------SIAID 140
            E   LK++ H N+++                                       +I   
Sbjct: 95  NEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQ 154

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHI--GDFELARF 184
           + S + YLH H    I+H D KP N+LL+N +   +I   DF L+ F
Sbjct: 155 ILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSF 198

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 46/155 (29%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMA-ECKALKNICHR 129
            + + +   +G G F  V++ V   ++     K   ++ +G  +  +  E   L    HR
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKF--VKVKGTDQVLVKKEISILNIARHR 61

Query: 130 NLVRF--------------------------------------ISIAIDVASALDYLHHH 151
           N++                                        +S    V  AL +LH H
Sbjct: 62  NILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH 121

Query: 152 CQELILHCDPKPSNVLLDNDLFAH--IGDFELARF 184
               I H D +P N++      +   I +F  AR 
Sbjct: 122 N---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQ 153

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 144 ALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ 193
            L  LH      ++H D  P N+LL ++    I DF LAR     +N T 
Sbjct: 146 GLHVLHEAG---VVHRDLHPGNILLADNNDITICDFNLAREDTADANKTH 192

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 48/159 (30%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS-IQCQGASKSFMAECKALKNICHR 129
            D F     +G G+F  V+      +     IK ++  + Q   +   AE + LK++ H 
Sbjct: 21  DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHP 80

Query: 130 NLVRFI-----------------------------------------SIAIDVASALDYL 148
           N+++                                            +   + +AL Y 
Sbjct: 81  NIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYF 140

Query: 149 HHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELARF 184
           H      ++H D KP N+L  +        I DF LA  
Sbjct: 141 HSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAEL 176

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 21/119 (17%)

Query: 132 VRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP 191
             F   A ++A  L +L       I++ D K  NV+LD++    I DF + +        
Sbjct: 444 AVFY--AAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT 498

Query: 192 TQSSSNGVRRTIGYTA----LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           T  +  G   T  Y A         G  V    D + +G+LL EM+  + P    FEG+
Sbjct: 499 T-KTFCG---TPDYIAPEIIAYQPYGKSV----DWWAFGVLLYEMLAGQAP----FEGE 545

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 54/156 (34%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALK--------- 124
           F +   IG G+F  +  G        VAIK+  ++ +        E +  K         
Sbjct: 11  FRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRA--PQLHLEYRFYKQLGSGDGIP 68

Query: 125 ---------------------------NICHRNLVRF-----ISIAIDVASALDYLHHHC 152
                                      ++C R    F     + IAI + S ++Y+H   
Sbjct: 69  QVYYFGPCGKYNAMVLELLGPSLEDLFDLCDR---TFSLKTVLMIAIQLISRMEYVHSKN 125

Query: 153 QELILHCDPKPSNVLL-----DNDLFAHIGDFELAR 183
              +++ D KP N L+           HI DF LA+
Sbjct: 126 ---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 36/173 (20%), Positives = 57/173 (32%), Gaps = 63/173 (36%)

Query: 80  IGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMA----ECKALKNIC-HRNLVRF 134
           +G GSF    + V   +    A+K++S       K   A    E  ALK    H N+V+ 
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIIS-------KRMEANTQKEITALKLCEGHPNIVKL 71

Query: 135 I-------------------------------------SIAIDVASALDYLHHHCQELIL 157
                                                  I   + SA+ ++H      ++
Sbjct: 72  HEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVG---VV 128

Query: 158 HCDPKPSNVLL---DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
           H D KP N+L    +++L   I DF  AR +           N   +T  +T 
Sbjct: 129 HRDLKPENLLFTDENDNLEIKIIDFGFARLKPP--------DNQPLKTPCFTL 173

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 136 SIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEVSNPT 192
            I   V   LDYLH  C+  I+H D KP N+LL   +  +     +    +         
Sbjct: 150 KIIQQVLQGLDYLHTKCR--IIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSG 207

Query: 193 QSSSN 197
            + S 
Sbjct: 208 SAVST 212

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 130 NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS 189
             VR   +A  +  AL +LH +    + H D KP N+L  N  F  + +   +   + V 
Sbjct: 123 PHVR--HMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHKSCEEKSVK 177

Query: 190 NPT 192
           N +
Sbjct: 178 NTS 180

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 21/111 (18%)

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN-GV 199
           +A  L +L       I++ D K  NV+LD++    I DF +   ++ + +   + +  G 
Sbjct: 130 IAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMC--KENIWDGVTTKTFCG- 183

Query: 200 RRTIGYTA----LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
             T  Y A         G  V    D + +G+LL EM+  + P    FEG+
Sbjct: 184 --TPDYIAPEIIAYQPYGKSV----DWWAFGVLLYEMLAGQAP----FEGE 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.9
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.87
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.84
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.73
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.55
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.78
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.41
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.25
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.14
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.49
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.47
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.2
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.03
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.03
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	96.92
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.78
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	95.19
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	95.14
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	94.89
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	93.9
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	93.82
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	93.12
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	92.42
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	91.65
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	90.47
3ats_A	357	Putative uncharacterized protein; hypothetical pro	90.25
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	88.43
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	87.39
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	86.43
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	84.84
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	82.31
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	81.31

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-51  Score=375.46  Aligned_cols=230  Identities=27%  Similarity=0.398  Sum_probs=175.4

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      +...+++.+.+.||+|+||+||+|++.   ..||||+++...  ....+.|.+|+.+|++++|||||++           
T Consensus        32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~i  108 (307)
T 3omv_A           32 EIEASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAI  108 (307)
T ss_dssp             BCCTTSCCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEE
T ss_pred             EEcHHHeEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEE
Confidence            344578899999999999999999875   359999987443  3345679999999999999999987           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.|+.||+.||+|||+++   ||||||||+||||++++.+||+|||+|+.....
T Consensus       109 VmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~  185 (307)
T 3omv_A          109 VTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW  185 (307)
T ss_dssp             EEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred             EEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence                                      568999999999999998   999999999999999999999999999866433


Q ss_pred             CCCCccCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ..  ........||+.|||||++.+   +.|+.++|||||||++|||+||+.||....... .+...+.....       
T Consensus       186 ~~--~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~-~~~~~~~~~~~-------  255 (307)
T 3omv_A          186 SG--SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMVGRGYA-------  255 (307)
T ss_dssp             ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHTTCC-------
T ss_pred             Cc--ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcCCC-------
Confidence            22  122345689999999999864   458999999999999999999999997432111 11111111110       


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      .+.+.                   .....++..+.+|+.+||+.||++||||.+|++.|+.+.+.++
T Consensus       256 ~p~~~-------------------~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp  303 (307)
T 3omv_A          256 SPDLS-------------------KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP  303 (307)
T ss_dssp             CCCST-------------------TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred             CCCcc-------------------cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence            00000                   0111455678899999999999999999999999999887664

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.2e-51  Score=374.97  Aligned_cols=225  Identities=21%  Similarity=0.309  Sum_probs=179.7

Q ss_pred             CCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|.+.+.||+|+||.||+|++.     .++..||||+++.......+.|.+|+.+|++++|||||++            
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            46889999999999999999975     3578999999987666667789999999999999999987            


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEE
Q 039228          135 --------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHI  176 (356)
Q Consensus       135 --------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl  176 (356)
                                                            +.++.||+.||.|||+++   ||||||||+|||++.++.+||
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki  169 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI  169 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccCHhhEEECCCCcEEE
Confidence                                                  347889999999999999   999999999999999999999


Q ss_pred             cccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHH
Q 039228          177 GDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       177 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      +|||+|+.......  ........||+.|+|||++.+..|+.++|||||||++|||+| |+.||......  .+...+..
T Consensus       170 ~DFGla~~~~~~~~--~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~~  245 (299)
T 4asz_A          170 GDFGMSRDVYSTDY--YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EVIECITQ  245 (299)
T ss_dssp             CCCSCHHHHTGGGC--EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHH
T ss_pred             CCcccceecCCCCc--eeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHc
Confidence            99999986543321  222344678999999999999999999999999999999999 89999753211  11111111


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      .           .. ..                  .+..++..+.+|+.+||+.||++||||++|++.|+.+.+..+.
T Consensus       246 ~-----------~~-~~------------------~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p~  293 (299)
T 4asz_A          246 G-----------RV-LQ------------------RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASPV  293 (299)
T ss_dssp             T-----------CC-CC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCC
T ss_pred             C-----------CC-CC------------------CCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCCc
Confidence            0           00 00                  0114556788999999999999999999999999998876543

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=8.1e-51  Score=372.28  Aligned_cols=240  Identities=20%  Similarity=0.258  Sum_probs=187.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++++.||+|+||+||+|++..+++.||||++++.   .....+.+.+|+++|++++|||||++             
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            45799999999999999999999999999999999753   23345779999999999999999997             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+|+.+.....
T Consensus       111 mEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~  187 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK  187 (311)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence                                    458899999999999999   99999999999999999999999999987653322


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        .......+||+.|+|||++.+..|+.++||||+||++|||+||+.||.....     ..            ++...+.
T Consensus       188 --~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-----~~------------~~~~i~~  248 (311)
T 4aw0_A          188 --QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-----GL------------IFAKIIK  248 (311)
T ss_dssp             --CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HH------------HHHHHHH
T ss_pred             --cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-----HH------------HHHHHHc
Confidence              2234457899999999999999999999999999999999999999964211     11            1111111


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccccCCcCCcccc
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRAPKL  348 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~~~~~~~~~~~  348 (356)
                      ..+..                +......+.+|+.+||+.||++|||++|++..-.=..+-......|+.+.+..+|.+
T Consensus       249 ~~~~~----------------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~~l~~~~pP~l  310 (311)
T 4aw0_A          249 LEYDF----------------PEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKL  310 (311)
T ss_dssp             TCCCC----------------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCCCC
T ss_pred             CCCCC----------------CcccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCCHHHhcCCCCCCC
Confidence            11100                001223568999999999999999999975432222233344456778877777764

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.6e-50  Score=375.14  Aligned_cols=222  Identities=22%  Similarity=0.318  Sum_probs=172.3

Q ss_pred             CCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|.+.+.||+|+||.||+|++.     .+++.||||+++.......+.|.+|+.+|++++|||||++            
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            46888899999999999999975     3578999999987666667889999999999999999987            


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          135 ----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       135 ----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                                                              +.|+.||+.||.|||+.+   ||||||||+||||+.++.+
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~  197 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV  197 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecccccHhhEEECCCCcE
Confidence                                                    358889999999999998   9999999999999999999


Q ss_pred             EEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHH
Q 039228          175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~  253 (356)
                      ||+|||+++.......  ........||+.|||||++.+..++.++|||||||++|||+| |+.||......  .+...+
T Consensus       198 Ki~DFGla~~~~~~~~--~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i  273 (329)
T 4aoj_A          198 KIGDFGMSRDIYSTDY--YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT--EAIDCI  273 (329)
T ss_dssp             EECCCC------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH--HHHHHH
T ss_pred             EEcccccceeccCCCc--ceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHH--HHHHHH
Confidence            9999999986543321  222344678999999999999999999999999999999999 89999753211  111111


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ...            ....                  .+..++..+.+|+.+||+.||++||||+||++.|+.+.+.
T Consensus       274 ~~g------------~~~~------------------~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          274 TQG------------RELE------------------RPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             HHT------------CCCC------------------CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HcC------------CCCC------------------CcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence            110            0000                  1114555788999999999999999999999999998765

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=4.4e-50  Score=368.91  Aligned_cols=220  Identities=20%  Similarity=0.276  Sum_probs=174.7

Q ss_pred             CCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      +++++.+.||+|+||.||+|++.     .+++.||||+++... ....+.|.+|+.++++++|||||++           
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS  105 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence            35778889999999999999974     356899999997543 3345789999999999999999987           


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC
Q 039228          135 ------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL  172 (356)
Q Consensus       135 ------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~  172 (356)
                                                                +.|+.||+.||.|||+++   ||||||||+||||++++
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~  182 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL  182 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCccccceEECCCC
Confidence                                                      247889999999999999   99999999999999999


Q ss_pred             ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHH
Q 039228          173 FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       173 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~  251 (356)
                      .+||+|||+++.......  ........||+.|+|||++.++.|+.++|||||||++|||+| |..||......  .+..
T Consensus       183 ~~Ki~DFGlar~~~~~~~--~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--~~~~  258 (308)
T 4gt4_A          183 NVKISDLGLFREVYAADY--YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--DVVE  258 (308)
T ss_dssp             CEEECCSCCBCGGGGGGC--BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH--HHHH
T ss_pred             CEEECCcccceeccCCCc--eeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH--HHHH
Confidence            999999999987644322  223345678999999999999999999999999999999999 89999753211  1111


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      .+..           ....                   ..+..++..+.+|+.+||+.||++||||++|++.|+++.
T Consensus       259 ~i~~-----------~~~~-------------------~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~  305 (308)
T 4gt4_A          259 MIRN-----------RQVL-------------------PCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG  305 (308)
T ss_dssp             HHHT-----------TCCC-------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             HHHc-----------CCCC-------------------CCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence            1111           0000                   011245667889999999999999999999999998753

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=7.5e-50  Score=371.10  Aligned_cols=214  Identities=19%  Similarity=0.219  Sum_probs=175.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      +.|++.+.||+|+||.||+|++..+|+.||||+++.......+.+.+|+.+|+.++|||||++                 
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            469999999999999999999999999999999987666666778999999999999999997                 


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.||+.||.|||+++   ||||||||+||||+.+|.+||+|||+|+.+....    ..
T Consensus       154 ~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~----~~  226 (346)
T 4fih_A          154 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV----PR  226 (346)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS----CC
T ss_pred             CCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEECCCCCEEEecCcCceecCCCC----Cc
Confidence                               458899999999999999   9999999999999999999999999998764332    22


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      ....+||+.|+|||++.+..|+.++|||||||++|||++|++||.....  ......+....+..        +.     
T Consensus       227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~~--------~~-----  291 (346)
T 4fih_A          227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPPR--------LK-----  291 (346)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSSCCC--------CS-----
T ss_pred             ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCCC--------CC-----
Confidence            3457899999999999999999999999999999999999999964211  11111111111100        00     


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                     ........+.+|+.+||..||++|||+.|+++
T Consensus       292 ---------------~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          292 ---------------NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             ---------------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ---------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                           00123345789999999999999999999876

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4.8e-50  Score=372.94  Aligned_cols=213  Identities=20%  Similarity=0.248  Sum_probs=167.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++++.||+|+||+||+|++..+++.||||++....  ....+.+.+|+.+|++++|||||++              
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm  102 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM  102 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence            468999999999999999999999999999999997543  2345678999999999999999987              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..|+.||+.||.|||+++   ||||||||+||||+.+|.+||+|||+|+.+....
T Consensus       103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~  179 (350)
T 4b9d_A          103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV  179 (350)
T ss_dssp             ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred             eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHHHEEECCCCCEEEcccccceeecCCc
Confidence                                     458899999999999999   9999999999999999999999999998654321


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          ......+||+.|+|||++.+..|+.++|||||||++|||+||+.||....     ....            +...+
T Consensus       180 ----~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-----~~~~------------~~~i~  238 (350)
T 4b9d_A          180 ----ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-----MKNL------------VLKII  238 (350)
T ss_dssp             ----HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHH------------HHHHH
T ss_pred             ----ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-----HHHH------------HHHHH
Confidence                12234679999999999999999999999999999999999999997421     1111            11111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ......               .....+..+.+|+.+||+.||++|||+.|+++
T Consensus       239 ~~~~~~---------------~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          239 SGSFPP---------------VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             HTCCCC---------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cCCCCC---------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111100               00123345789999999999999999999986

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.9e-49  Score=367.29  Aligned_cols=223  Identities=19%  Similarity=0.164  Sum_probs=175.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .+.|++.+.||+|+||.||+|+++.+|+.||||+++....     ..+|+.+|+.++|||||++                
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  131 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL  131 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            4568889999999999999999999999999999975432     2469999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEcccccccccccCCCC-
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFRQEVSNP-  191 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~~~~-  191 (356)
                                           ..++.||+.||+|||+++   ||||||||+||||+.+| .+||+|||+|+.+...... 
T Consensus       132 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~  208 (336)
T 4g3f_A          132 LEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK  208 (336)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccc
Confidence                                 458999999999999999   99999999999999887 6999999999876543221 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ........+||+.|||||++.+..|+.++|||||||++|||+||+.||....... .+....... + ..        . 
T Consensus       209 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~~~i~~~~-~-~~--------~-  276 (336)
T 4g3f_A          209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP-LCLKIASEP-P-PI--------R-  276 (336)
T ss_dssp             -----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC-CHHHHHHSC-C-GG--------G-
T ss_pred             ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHHcCC-C-Cc--------h-
Confidence            1222344689999999999999999999999999999999999999997543322 111111110 0 00        0 


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                                        ..+..++..+.+++.+||+.||++|||+.||++.|..+....
T Consensus       277 ------------------~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~  318 (336)
T 4g3f_A          277 ------------------EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV  318 (336)
T ss_dssp             ------------------GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             ------------------hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence                              001133446789999999999999999999999998887664

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=5.4e-49  Score=355.19  Aligned_cols=211  Identities=21%  Similarity=0.280  Sum_probs=157.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||+||+|++..+++.||||+++...   ....+.+.+|+.+|++++|||||++             
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            468999999999999999999999999999999997542   2345678999999999999999987             


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+|+.....   
T Consensus        92 mEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~---  165 (275)
T 3hyh_A           92 IEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHK---IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG---  165 (275)
T ss_dssp             EECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCChHHeEECCCCCEEEeecCCCeecCCC---
Confidence                                   568899999999999999   999999999999999999999999999865432   


Q ss_pred             CccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        .......||+.|+|||++.+..+ +.++||||+||++|+|+||+.||....     .......        +..    
T Consensus       166 --~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~-----~~~~~~~--------i~~----  226 (275)
T 3hyh_A          166 --NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLFKN--------ISN----  226 (275)
T ss_dssp             -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHH--------HHH----
T ss_pred             --CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC-----HHHHHHH--------HHc----
Confidence              22334789999999999998876 579999999999999999999996421     1111111        110    


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....     .           +......+.+|+.+||+.||++|||++|+++
T Consensus       227 ~~~~-----~-----------p~~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          227 GVYT-----L-----------PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             TCCC-----C-----------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCC-----C-----------CCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            0000     0           0012335679999999999999999999986

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=6.2e-49  Score=357.67  Aligned_cols=210  Identities=24%  Similarity=0.305  Sum_probs=164.3

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      ++.+.||+|+||.||+|.+..++..||+|++....  ....+.|.+|+.+|++++|||||++                  
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            66778999999999999999999999999997442  3345679999999999999999987                  


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.||+.||+|||+++ ++||||||||+||||+. ++.+||+|||+|+....   
T Consensus       109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~---  184 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA---  184 (290)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT---
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCCC---
Confidence                                   458899999999999875 45999999999999984 79999999999985432   


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||....    ...........+..     +   
T Consensus       185 ---~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~----~~~~~~~~i~~~~~-----~---  248 (290)
T 3fpq_A          185 ---SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ----NAAQIYRRVTSGVK-----P---  248 (290)
T ss_dssp             ---TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS----SHHHHHHHHTTTCC-----C---
T ss_pred             ---CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCC----cHHHHHHHHHcCCC-----C---
Confidence               22334689999999999875 69999999999999999999999996422    11111111110000     0   


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...                  +...+..+.+|+.+||+.||++|||+.|+++
T Consensus       249 ~~~------------------~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          249 ASF------------------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             GGG------------------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCC------------------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000                  0012234689999999999999999999875

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=7e-49  Score=360.96  Aligned_cols=241  Identities=23%  Similarity=0.245  Sum_probs=171.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .+|.+.+.||+|+||.||+|++.  |+.||||+++.... ....+..|+..+.+++|||||++                 
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~--g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEET--TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC--CEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEE
Confidence            35788899999999999999985  79999999974321 12233456667778999999987                 


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcC-----CCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 -----------------------ISIAIDVASALDYLHHHC-----QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~-----~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                             +.++.|++.||+|||+++     .++||||||||+||||+.++.+||+|||+|+...
T Consensus        80 ~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~  159 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  159 (303)
T ss_dssp             EECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             ecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcccc
Confidence                                   568899999999999871     1239999999999999999999999999998765


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCC------CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGS------EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ..............||+.|+|||++.+.      .++.++|||||||++|||+||.+||.........+.....  ....
T Consensus       160 ~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~--~~~~  237 (303)
T 3hmm_A          160 SATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP--SDPS  237 (303)
T ss_dssp             TTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSC--SSCC
T ss_pred             CCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhccc--ccch
Confidence            5443333334457899999999999764      3678999999999999999998887543222111100000  0001


Q ss_pred             hHHH----hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          261 VMDI----VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       261 ~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ...+    ....+.+..+.             .....+++..+.+|+.+||+.||++||||.+|++.|+++.++
T Consensus       238 ~~~~~~~~~~~~~rp~~p~-------------~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          238 VEEMRKVVCEQKLRPNIPN-------------RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHHHHTTSCCCCCCCG-------------GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcccCCCCCCc-------------cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            1111    11111111110             001125667889999999999999999999999999998754

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.1e-48  Score=372.01  Aligned_cols=214  Identities=19%  Similarity=0.221  Sum_probs=175.8

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      +.|++.+.||+|+||.||+|++..+|+.||||++........+.+.+|+.+|+.++|||||++                 
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            469999999999999999999999999999999987766666789999999999999999997                 


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.||+.||.|||+++   ||||||||+||||+.+|.+||+|||+|+.+....    ..
T Consensus       231 ~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~----~~  303 (423)
T 4fie_A          231 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV----PR  303 (423)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC----CC
T ss_pred             CCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEecCccceECCCCC----cc
Confidence                               458899999999999999   9999999999999999999999999998764332    23


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      ....+||+.|||||++.+..|+.++|||||||++|||++|+.||....  .......+....+..        +. .   
T Consensus       304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~i~~~~~~~--------~~-~---  369 (423)
T 4fie_A          304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--PLKAMKMIRDNLPPR--------LK-N---  369 (423)
T ss_dssp             BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHHSCCCC--------CS-C---
T ss_pred             ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--HHHHHHHHHcCCCCC--------Cc-c---
Confidence            345789999999999999999999999999999999999999996421  111111111111100        00 0   


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                      .......+.+|+.+||..||++|||+.|+++
T Consensus       370 ----------------~~~~s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          370 ----------------LHKVSPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             ----------------TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ----------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence                            0122345789999999999999999999876

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.7e-48  Score=364.60  Aligned_cols=232  Identities=20%  Similarity=0.223  Sum_probs=183.9

Q ss_pred             HHHHHhhcCCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccCc-cchHHHHHHHHHHhhcCC-CChHHH--
Q 039228           64 YESLLKATDGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQCQ-GASKSFMAECKALKNICH-RNLVRF--  134 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h-~niv~l--  134 (356)
                      ...|....++|++.+.||+|+||.||+|.+..+     ++.||||.+..... ...+.|.+|+.+|.+++| ||||++  
T Consensus        56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g  135 (353)
T 4ase_A           56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG  135 (353)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence            455667778999999999999999999998643     46899999975433 335679999999999976 899987  


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCC
Q 039228          135 ----------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPK  162 (356)
Q Consensus       135 ----------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlk  162 (356)
                                                                          +.++.||+.||.|||+++   |||||||
T Consensus       136 ~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK  212 (353)
T 4ase_A          136 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLA  212 (353)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCS
T ss_pred             EEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCC---eecCccC
Confidence                                                                247789999999999999   9999999


Q ss_pred             CCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCc
Q 039228          163 PSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDF  241 (356)
Q Consensus       163 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~  241 (356)
                      |+|||+++++.+||+|||+|+.+.....  ........||+.|||||++.+..|+.++|||||||++|||+| |+.||..
T Consensus       213 ~~NILl~~~~~vKi~DFGlar~~~~~~~--~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~  290 (353)
T 4ase_A          213 ARNILLSEKNVVKICDFGLARDIYKDPD--YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  290 (353)
T ss_dssp             GGGEEECGGGCEEECCCGGGSCTTTCTT--SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred             ccceeeCCCCCEEECcchhhhhcccCCC--ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCC
Confidence            9999999999999999999986643322  223345778999999999999999999999999999999998 9999975


Q ss_pred             cccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHH
Q 039228          242 MFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAV  321 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl  321 (356)
                      ..... .+...+...            .....                  +..++..+.+++.+||+.||++||||++|+
T Consensus       291 ~~~~~-~~~~~i~~g------------~~~~~------------------p~~~~~~~~~li~~c~~~dP~~RPt~~eil  339 (353)
T 4ase_A          291 VKIDE-EFCRRLKEG------------TRMRA------------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELV  339 (353)
T ss_dssp             CCCSH-HHHHHHHHT------------CCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCHHH-HHHHHHHcC------------CCCCC------------------CccCCHHHHHHHHHHcCcChhHCcCHHHHH
Confidence            43221 111111111            11010                  113445678999999999999999999999


Q ss_pred             HHHHHhhhhh
Q 039228          322 HDLQSVNNIL  331 (356)
Q Consensus       322 ~~L~~i~~~~  331 (356)
                      +.|+.+.++-
T Consensus       340 ~~L~~llq~~  349 (353)
T 4ase_A          340 EHLGNLLQAN  349 (353)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=3.9e-48  Score=354.88  Aligned_cols=214  Identities=23%  Similarity=0.346  Sum_probs=157.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|++++.||+|+||+||+|+++.+++.||||+++.... ...+.+.+|+.+|++++|||||++                
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            469999999999999999999999999999999975543 344678999999999999999975                


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcc
Q 039228          135 ------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD  178 (356)
Q Consensus       135 ------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~D  178 (356)
                                                          +.++.||+.||+|||+++   ||||||||+|||++.++.+||+|
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~---IiHRDlKp~NILl~~~~~vKl~D  161 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGD  161 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCc---CccccCcHHHeEECCCCcEEEcc
Confidence                                                347889999999999999   99999999999999999999999


Q ss_pred             cccccccccCCCCC--------ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHH
Q 039228          179 FELARFRQEVSNPT--------QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLH  250 (356)
Q Consensus       179 fg~a~~~~~~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~  250 (356)
                      ||+|+.+.......        .......+||+.|||||++.+..|+.++|||||||++|||++   ||....+   ...
T Consensus       162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~---~~~  235 (299)
T 4g31_A          162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQME---RVR  235 (299)
T ss_dssp             CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHH---HHH
T ss_pred             CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccH---HHH
Confidence            99998765432211        112344679999999999999999999999999999999996   7753111   000


Q ss_pred             HHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          251 NFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...         .+.+    ...               +.........+.+|+.+||+.||++|||+.|+++
T Consensus       236 ~~~---------~~~~----~~~---------------p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          236 TLT---------DVRN----LKF---------------PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHH---------HHHT----TCC---------------CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHH---------HHhc----CCC---------------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            000         0000    000               0011122334568999999999999999999876

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.4e-47  Score=360.69  Aligned_cols=244  Identities=21%  Similarity=0.195  Sum_probs=173.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++++.||+|+||+||+|++..+|+.||||+++...  ....+.+.+|+.+|+.++|||||++              
T Consensus        53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~  132 (398)
T 4b99_A           53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK  132 (398)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred             CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence            357999999999999999999999999999999997543  2334678899999999999999986              


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.||+.||.|||+++   ||||||||+|||++.+|.+||+|||+|+.+.
T Consensus       133 ~~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          133 SVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQ---VIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             CEEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             EEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCc---CcCCCcCccccccCCCCCEEEeecceeeecc
Confidence                                        458899999999999999   9999999999999999999999999998765


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC--chHH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN--RVMD  263 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~  263 (356)
                      .............+||+.|+|||++.+. .++.++||||+||++|||++|++||......+ .+..........  ....
T Consensus       210 ~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~-~l~~I~~~~g~p~~~~~~  288 (398)
T 4b99_A          210 TSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVH-QLQLIMMVLGTPSPAVIQ  288 (398)
T ss_dssp             ------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHH-HHHHHHHHHCCCCGGGTC
T ss_pred             cCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHH-HHHHHHHhcCCCChHHhh
Confidence            4333333445568899999999998875 46899999999999999999999997532211 111221111111  1000


Q ss_pred             Hhhh-hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNL-VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+.. .............+.-.....+    .....+.+|+.+||..||++|||+.|+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          289 AVGAERVRAYIQSLPPRQPVPWETVYP----GADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             -----CHHHHHHSSCCCCCCCHHHHST----TCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhhhhhhhhhhcCCCcCCCCHHHhCC----CCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0000 0000000000000000000111    12335689999999999999999999876

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.1e-47  Score=351.21  Aligned_cols=206  Identities=22%  Similarity=0.239  Sum_probs=157.7

Q ss_pred             CCCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|++++.||+|+||+||+|+..   .+++.||||+++...  ......+.+|+.+|++++|||||++            
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            56999999999999999999974   467899999997542  2233568899999999999999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.||+.||.|||+++   ||||||||+|||++.+|.+||+|||+|+......
T Consensus       104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~  180 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE  180 (304)
T ss_dssp             EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTSCEEEESSEEEEC-----
T ss_pred             EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHeEEcCCCCEEecccccceeccCCC
Confidence                                     458899999999999999   9999999999999999999999999998653322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          ......+||+.|+|||++.+..|+.++|||||||++|||+||+.||.....     .+..            ...+
T Consensus       181 ----~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-----~~~~------------~~i~  239 (304)
T 3ubd_A          181 ----KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR-----KETM------------TMIL  239 (304)
T ss_dssp             ----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH------------HHHH
T ss_pred             ----ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH-----HHHH------------HHHH
Confidence                223457899999999999999999999999999999999999999974221     1111            1111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      ......                +...+..+.+|+.+||+.||++|||+
T Consensus       240 ~~~~~~----------------p~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          240 KAKLGM----------------PQFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             HCCCCC----------------CTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             cCCCCC----------------CCcCCHHHHHHHHHHcccCHHHCCCC
Confidence            111000                00223356899999999999999985

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.4e-44  Score=337.14  Aligned_cols=171  Identities=22%  Similarity=0.283  Sum_probs=139.8

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH--------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF--------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l--------  134 (356)
                      +....+.|++.+.||+|+||+||+|+++   .+++.||+|.+....  ...++.+|+.+|+.+ +||||+++        
T Consensus        16 ~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~   93 (361)
T 4f9c_A           16 VPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND   93 (361)
T ss_dssp             SGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT
T ss_pred             cCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC
Confidence            3345678999999999999999999874   457899999986442  345788999999998 69999987        


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEccccccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARFRQE  187 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~~~~~  187 (356)
                                                ..++.|++.||+|||++|   ||||||||+|||++.+ +.+||+|||+|+....
T Consensus        94 ~~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~g---IiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~  170 (361)
T 4f9c_A           94 HVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFG---IVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD  170 (361)
T ss_dssp             EEEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCEECTT
T ss_pred             EEEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCcCCHHHeEEeCCCCeEEECcCCCCcccCC
Confidence                                      458899999999999999   9999999999999876 8999999999986533


Q ss_pred             CCCC------------------------CccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          188 VSNP------------------------TQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       188 ~~~~------------------------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ....                        ........+||+.|+|||++.+. .|+.++||||+||++|||++|+.||...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~  250 (361)
T 4f9c_A          171 TKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKA  250 (361)
T ss_dssp             CSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCC
Confidence            2110                        01122345799999999999875 4899999999999999999999999643

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.9e-43  Score=349.62  Aligned_cols=215  Identities=16%  Similarity=0.166  Sum_probs=172.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|+++.+|+.||+|++........+.+.+|+.+|+.++|||||++                
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            3679999999999999999999999999999999987666666788999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC--CceEEcccccccccccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND--LFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~--~~~kl~Dfg~a~~~~~~~~  190 (356)
                                            ..++.||+.||.|||+++   |+||||||+|||++.+  +.+||+|||+|+.+.... 
T Consensus       236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~-  311 (573)
T 3uto_A          236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-  311 (573)
T ss_dssp             CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-
T ss_pred             cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeccCChhhccccCCCCCCEEEeeccceeEccCCC-
Confidence                                  458899999999999999   9999999999999854  899999999998764322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          .....+||+.|+|||++.+..|+.++|||||||++|||++|.+||......  .....+           ......
T Consensus       312 ----~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~--~~~~~i-----------~~~~~~  374 (573)
T 3uto_A          312 ----SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD--ETLRNV-----------KSCDWN  374 (573)
T ss_dssp             ----EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHH-----------HTTCCC
T ss_pred             ----ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHH-----------HhCCCC
Confidence                223467999999999999999999999999999999999999999743211  111110           000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...            ..    .......+.+|+.+||..||.+|||+.|+++
T Consensus       375 ~~~------------~~----~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          375 MDD------------SA----FSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             CCS------------GG----GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCc------------cc----ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000            00    0022335679999999999999999999986

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=8.1e-43  Score=346.35  Aligned_cols=213  Identities=18%  Similarity=0.200  Sum_probs=164.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHH---HHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMA---ECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~---E~~~l~~l~h~niv~l----------  134 (356)
                      .++|+++++||+|+||.||+|+++.+|+.||||++++..   ......+.+   ++.+++.++|||||++          
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            478999999999999999999999999999999997432   122233333   4567778899999987          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+++   ||||||||+||||+.+|.+||+|||+|+.+..
T Consensus       268 ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~g---IiHRDLKPeNILld~~G~vKL~DFGlA~~~~~  344 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSK  344 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCchHHeEEeCCCCEEecccceeeecCC
Confidence                                       458899999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      .      .....+||+.|+|||++.+ ..|+.++|||||||++|||++|.+||......+  .......           
T Consensus       345 ~------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~--~~~i~~~-----------  405 (689)
T 3v5w_A          345 K------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHEIDRM-----------  405 (689)
T ss_dssp             C------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC--HHHHHHH-----------
T ss_pred             C------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHHh-----------
Confidence            2      2334789999999999974 579999999999999999999999997533222  1111111           


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                       .+......                +......+.+|+.+||..||.+|++     ++||++
T Consensus       406 -i~~~~~~~----------------p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          406 -TLTMAVEL----------------PDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             -HHHCCCCC----------------CTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             -hcCCCCCC----------------CccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence             01000000                0022235689999999999999998     566653

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.8e-42  Score=319.37  Aligned_cols=241  Identities=29%  Similarity=0.444  Sum_probs=191.2

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ++...+++|++.+.||+|+||.||+|.+. +++.||||++........+.+.+|+.+++.++||||+++           
T Consensus        33 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  111 (321)
T 2qkw_B           33 DLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI  111 (321)
T ss_dssp             CCCCCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred             HHHHHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence            44557889999999999999999999965 578999999876666667789999999999999999986           


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++.
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~  188 (321)
T 2qkw_B          112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKK  188 (321)
T ss_dssp             EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred             EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCC---eecCCCCHHHEEECCCCCEEEeecccccc
Confidence                                          568999999999999999   99999999999999999999999999986


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC-ccHHHHHHHh-CCCchH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-LNLHNFARMA-FPNRVM  262 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~-~~~~~~~~~~-~~~~~~  262 (356)
                      ......  ........||+.|+|||++.+..++.++||||||+++|||++|+.||....... .....+.... ....+.
T Consensus       189 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (321)
T 2qkw_B          189 GTELDQ--THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE  266 (321)
T ss_dssp             CSSSSC--CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCC
T ss_pred             cccccc--cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHH
Confidence            543221  122334668999999999988899999999999999999999999997544322 2333332211 111222


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .++++.+...                  ....++..+.+++.+||+.||++|||+.+|++.|+.+.+.
T Consensus       267 ~~~~~~~~~~------------------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          267 QIVDPNLADK------------------IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             SSSSSSCTTC------------------SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             HhcChhhccc------------------cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            2222222111                  1236778899999999999999999999999999988754

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=313.60  Aligned_cols=230  Identities=20%  Similarity=0.287  Sum_probs=183.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|.+........+.+.+|+.++++++||||+++                
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence            4579999999999999999999999999999999876666667789999999999999999986                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++..........
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  165 (310)
T 3s95_A           89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP  165 (310)
T ss_dssp             CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred             cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence                                  458899999999999999   9999999999999999999999999998664332211


Q ss_pred             ----------ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          193 ----------QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       193 ----------~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                                ........||+.|+|||++.+..++.++||||||+++|+|++|..||..........        .....
T Consensus       166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~--------~~~~~  237 (310)
T 3s95_A          166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF--------GLNVR  237 (310)
T ss_dssp             --------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS--------SBCHH
T ss_pred             cccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH--------hhhhh
Confidence                      111124678999999999999999999999999999999999999986533221110        00111


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      ...+.....                      .++..+.+++.+||+.||++|||+.+|++.|+.+...+..
T Consensus       238 ~~~~~~~~~----------------------~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~  286 (310)
T 3s95_A          238 GFLDRYCPP----------------------NCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG  286 (310)
T ss_dssp             HHHHHTCCT----------------------TCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCC----------------------CCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence            112211111                      2223578999999999999999999999999999987644

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=3.8e-42  Score=318.87  Aligned_cols=245  Identities=29%  Similarity=0.490  Sum_probs=194.3

Q ss_pred             cCChhhHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--
Q 039228           58 AIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--  134 (356)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--  134 (356)
                      ....+++.++....++|++.+.||+|+||.||+|.+. +++.||||++..... .....+.+|+.+++.++||||+++  
T Consensus        16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             ccceecHHHHHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence            3456778899999999999999999999999999864 578999999875432 223468899999999999999987  


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhhc---CCCcEEecCCCCCCeEeCCCC
Q 039228          135 ---------------------------------------ISIAIDVASALDYLHHH---CQELILHCDPKPSNVLLDNDL  172 (356)
Q Consensus       135 ---------------------------------------~~i~~~i~~aL~~LH~~---~~~~iiH~Dlkp~NIll~~~~  172 (356)
                                                             ..++.+++.||.|||+.   +   |+||||||+|||++.++
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~---ivH~Dlkp~Nil~~~~~  171 (326)
T 3uim_A           95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPK---IIHRDVKAANILLDEEF  171 (326)
T ss_dssp             EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSC---EECCCCSGGGEEECTTC
T ss_pred             EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC---eEeCCCchhhEEECCCC
Confidence                                                   45889999999999999   7   99999999999999999


Q ss_pred             ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccc---cCCccH
Q 039228          173 FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF---EGDLNL  249 (356)
Q Consensus       173 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~---~~~~~~  249 (356)
                      .+||+|||++........   .......||+.|+|||++.+..++.++||||||+++|+|++|..||+...   ......
T Consensus       172 ~~kl~Dfg~~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  248 (326)
T 3uim_A          172 EAVVGDFGLAKLMDYKDT---HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVML  248 (326)
T ss_dssp             CEEECCCSSCEECCSSSS---CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBH
T ss_pred             CEEeccCccccccCcccc---cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhH
Confidence            999999999986643221   22334568999999999988889999999999999999999999996321   223344


Q ss_pred             HHHHHHhCCC-chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          250 HNFARMAFPN-RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       250 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ..+....... ....+.+..+....                  ...++..+.+++.+||+.||.+|||+.+|++.|+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          249 LDWVKGLLKEKKLEALVDVDLQGNY------------------KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             HHHHTTTTSSCCSTTSSCTTCTTSC------------------CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             HHHHHHHhhchhhhhhcChhhcccc------------------CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            4554444322 33333333332222                  236778899999999999999999999999999863

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.1e-41  Score=311.89  Aligned_cols=228  Identities=21%  Similarity=0.341  Sum_probs=174.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhh--cCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKN--ICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|++  +++.||||++...   ....+..|.+++..  ++||||+++              
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            56799999999999999999998  4799999998643   34556667777666  899999986              


Q ss_pred             --------------------------HHHHHHHHHHHHHHh--------hcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 --------------------------ISIAIDVASALDYLH--------HHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH--------~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                +.++.|++.||.|||        +.+   |+||||||+|||++.++.+||+|||
T Consensus        82 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg  158 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPA---IAHRDLKSKNILVKKNGQCCIADLG  158 (301)
T ss_dssp             EEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCE---EECSCCCGGGEEECTTSCEEECCCT
T ss_pred             EEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC---eecCCCChHhEEEcCCCCEEEeeCC
Confidence                                      568899999999999        777   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCC------CCCCccchHhHHHHHHHHHcC----------CCCCCcccc
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS------EVSTNGDAYNYGILLLEMVTR----------RKPIDFMFE  244 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~sDiwSlG~~l~elltg----------~~Pf~~~~~  244 (356)
                      +++.................||+.|+|||++.+.      .++.++|||||||++|||++|          ..||.....
T Consensus       159 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~  238 (301)
T 3q4u_A          159 LAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVP  238 (301)
T ss_dssp             TCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred             CeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCC
Confidence            9986654433222233445789999999999876      455789999999999999999          888865544


Q ss_pred             CCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          245 GDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      ..................    +.+...                 .....++..+.+++.+||+.||++|||+.+|++.|
T Consensus       239 ~~~~~~~~~~~~~~~~~~----~~~~~~-----------------~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L  297 (301)
T 3q4u_A          239 NDPSFEDMRKVVCVDQQR----PNIPNR-----------------WFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL  297 (301)
T ss_dssp             SSCCHHHHHHHHTTSCCC----CCCCGG-----------------GGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHH
T ss_pred             CCcchhhhhHHHhccCCC----CCCChh-----------------hccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHH
Confidence            443333332222111000    000000                 00115667889999999999999999999999999


Q ss_pred             HHh
Q 039228          325 QSV  327 (356)
Q Consensus       325 ~~i  327 (356)
                      +++
T Consensus       298 ~~i  300 (301)
T 3q4u_A          298 TKI  300 (301)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            986

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.3e-41  Score=320.60  Aligned_cols=257  Identities=15%  Similarity=0.167  Sum_probs=185.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCC-----CeEEEEEEeeccCccc-----------hHHHHHHHHHHhhcCCCChHH
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLN-----RAVVAIKVLSIQCQGA-----------SKSFMAECKALKNICHRNLVR  133 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~-----~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~  133 (356)
                      ..++|++.+.||+|+||.||+|.+..+     ++.||||++.......           ...+..|+..+..++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            356899999999999999999999765     5789999987543211           123445666777888999987


Q ss_pred             H-----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC--C
Q 039228          134 F-----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD--N  170 (356)
Q Consensus       134 l-----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~--~  170 (356)
                      +                                         +.++.||+.||.|||+.+   |+||||||+|||++  .
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~---iiHrDlkp~Nill~~~~  189 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHE---YVHGDIKASNLLLNYKN  189 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEESSC
T ss_pred             EEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eEEecCCHHHEEEecCC
Confidence            5                                         568899999999999999   99999999999999  8


Q ss_pred             CCceEEcccccccccccCCCCC---ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCc
Q 039228          171 DLFAHIGDFELARFRQEVSNPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL  247 (356)
Q Consensus       171 ~~~~kl~Dfg~a~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~  247 (356)
                      ++.+||+|||+++.+.......   ........||+.|+|||++.+..++.++|||||||++|||+||+.||...... .
T Consensus       190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~-~  268 (364)
T 3op5_A          190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD-P  268 (364)
T ss_dssp             TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-H
T ss_pred             CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-H
Confidence            9999999999998765432211   12224456999999999999999999999999999999999999999753322 2


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .........+...+..+++..+...                     .++..+.+++..||+.||.+||++.+|++.|+.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~  327 (364)
T 3op5_A          269 KYVRDSKIRYRENIASLMDKCFPAA---------------------NAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG  327 (364)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHSCTT---------------------CCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHhcccc---------------------cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            2222233333334455555544211                     2344688999999999999999999999999999


Q ss_pred             hhhhcc----ccccccCCcCCccccccc
Q 039228          328 NNILLP----ETVFKSLTNNRAPKLKAS  351 (356)
Q Consensus       328 ~~~~~~----~~~~~~~~~~~~~~~~~~  351 (356)
                      .+.+..    ...+.-..|...+....+
T Consensus       328 ~~~~~~~~~~~~dw~~~~~~~~~~~~~~  355 (364)
T 3op5_A          328 LKAIGSKDDGKLDLSVVENGGLKAKTIT  355 (364)
T ss_dssp             HHHTTCCCCCCCCC--------------
T ss_pred             HHHcCCCcCCccceEeccCCccchhhhh
Confidence            876532    344554555554444433

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.7e-41  Score=309.69  Aligned_cols=215  Identities=19%  Similarity=0.222  Sum_probs=174.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++........+.+.+|+.+++.++||||+++                
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            4579999999999999999999999999999999987666667788999999999999999986                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCcc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS  194 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~  194 (356)
                                          ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++.......    .
T Consensus        99 ~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~  171 (297)
T 3fxz_A           99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ----S  171 (297)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTT----C
T ss_pred             CCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc----c
Confidence                                458899999999999999   9999999999999999999999999997654322    2


Q ss_pred             CCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccc
Q 039228          195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNK  274 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  274 (356)
                      ......||+.|+|||++.+..++.++|||||||++|+|++|..||....... ..........+.         +.    
T Consensus       172 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~---------~~----  237 (297)
T 3fxz_A          172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATNGTPE---------LQ----  237 (297)
T ss_dssp             CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHHCSCC---------CS----
T ss_pred             ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCCC---------CC----
Confidence            2334678999999999999999999999999999999999999996422110 000000000000         00    


Q ss_pred             cccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          275 VLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                      ........+.+++.+||+.||++|||+.++++
T Consensus       238 ----------------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          238 ----------------NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             ----------------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ----------------CccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence                            00123345789999999999999999999986

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=7.4e-42  Score=317.58  Aligned_cols=224  Identities=22%  Similarity=0.347  Sum_probs=170.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeE----EEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAV----VAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.    ||+|.+... .....+.+.+|+.++++++||||+++           
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   93 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL   93 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEE
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEE
Confidence            35699999999999999999998777665    577777533 23445789999999999999999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus        94 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~  170 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE  170 (327)
T ss_dssp             EEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTHHHHHTTT
T ss_pred             EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCChheEEECCCCCEEEccCcceeEccCC
Confidence                                      558899999999999999   999999999999999999999999999876443


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..  ........+|..|+|||++.+..++.++|||||||++|||++ |..||......  .+...            +..
T Consensus       171 ~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~------------~~~  234 (327)
T 3poz_A          171 EK--EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSI------------LEK  234 (327)
T ss_dssp             CC---------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHH------------HHT
T ss_pred             cc--cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHH------------HHc
Confidence            22  122233556889999999999999999999999999999999 99999753221  11111            111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ......                  ...+...+.+++.+||+.||.+|||+.+|++.|+.+....
T Consensus       235 ~~~~~~------------------~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~~  280 (327)
T 3poz_A          235 GERLPQ------------------PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             TCCCCC------------------CTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTSH
T ss_pred             CCCCCC------------------CccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhhh
Confidence            110000                  0123346789999999999999999999999999987653

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.9e-40  Score=304.69  Aligned_cols=245  Identities=25%  Similarity=0.381  Sum_probs=190.8

Q ss_pred             cCChhhHHHHHhhcCCCCcc------ccceecCceEEEEEEECCCCeEEEEEEeeccC----ccchHHHHHHHHHHhhcC
Q 039228           58 AIPKEYYESLLKATDGFPLI------NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC----QGASKSFMAECKALKNIC  127 (356)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~  127 (356)
                      ....+++.++...+++|...      +.||+|+||.||+|.+  +++.||+|++....    ....+.+.+|+.+++.++
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~   88 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ   88 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence            34667888889999988877      8899999999999986  47899999986432    234567899999999999


Q ss_pred             CCChHHH----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeE
Q 039228          128 HRNLVRF----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVL  167 (356)
Q Consensus       128 h~niv~l----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIl  167 (356)
                      ||||+++                                        +.++.+++.||.|||+.+   |+||||||+||+
T Consensus        89 h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil  165 (307)
T 2nru_A           89 HENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANIL  165 (307)
T ss_dssp             CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEE
T ss_pred             CCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCC---eecCCCCHHHEE
Confidence            9999986                                        457889999999999999   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCc
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL  247 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~  247 (356)
                      ++.++.+||+|||++........  ........||+.|+|||.+.+ .++.++||||||+++|+|++|..||....... 
T Consensus       166 i~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-  241 (307)
T 2nru_A          166 LDEAFTAKISDFGLARASEKFAQ--TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-  241 (307)
T ss_dssp             ECTTCCEEECCCTTCEECCSCSS--CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS-
T ss_pred             EcCCCcEEEeecccccccccccc--cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH-
Confidence            99999999999999986543221  122334678999999998865 58899999999999999999999997644332 


Q ss_pred             cHHHHHHH--hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          248 NLHNFARM--AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       248 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      .+..+...  .....+.++++..+...                   ....+..+.+++.+||+.||.+|||+.+|++.|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~  302 (307)
T 2nru_A          242 LLLDIKEEIEDEEKTIEDYIDKKMNDA-------------------DSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQ  302 (307)
T ss_dssp             BTTHHHHHHHTTSCCHHHHSCSSCSCC-------------------CHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhhhcccccccc-------------------chHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence            11122111  11223334444333211                   2366778999999999999999999999999999


Q ss_pred             Hhhhh
Q 039228          326 SVNNI  330 (356)
Q Consensus       326 ~i~~~  330 (356)
                      ++..+
T Consensus       303 ~l~~s  307 (307)
T 2nru_A          303 EMTAS  307 (307)
T ss_dssp             HHC--
T ss_pred             HHhcC
Confidence            98653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=2.2e-41  Score=313.75  Aligned_cols=241  Identities=23%  Similarity=0.300  Sum_probs=178.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|++.  ++.||||++.... ........|+.++++++||||+++                
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l   99 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL   99 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence            567999999999999999999986  7999999997543 233456679999999999999986                


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhc----------CCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHH----------CQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~----------~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                              ..++.|++.||.|||+.          +   |+||||||+|||++.++.+||+|||
T Consensus       100 v~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~---ivH~Dlkp~Nill~~~~~~kL~DFg  176 (322)
T 3soc_A          100 ITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPA---ISHRDIKSKNVLLKNNLTACIADFG  176 (322)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECE---EECSCCSGGGEEECTTCCEEECCCT
T ss_pred             EEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCC---EEeCCCChHhEEECCCCeEEEccCC
Confidence                                    45889999999999998          7   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCC-----CCCCccchHhHHHHHHHHHcCCCCCCccccCCcc-HHHHHH
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-----EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN-LHNFAR  254 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~-~~~~~~  254 (356)
                      +++.......  ........||+.|+|||++.+.     .++.++|||||||++|||+||+.||......... +.... 
T Consensus       177 ~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~-  253 (322)
T 3soc_A          177 LALKFEAGKS--AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEI-  253 (322)
T ss_dssp             TCEEECTTSC--CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHH-
T ss_pred             cccccccccC--ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhh-
Confidence            9987654322  2223346789999999999863     4566889999999999999999999764432211 11110 


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                       .......++...........       .....+  ....++..+.+|+.+||+.||++|||+.+|++.|+.+.+.
T Consensus       254 -~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          254 -GQHPSLEDMQEVVVHKKKRP-------VLRDYW--QKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             -CSSCCHHHHHHHHTTSCCCC-------CCCGGG--GSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -ccCCchhhhhhhhhcccCCC-------Cccccc--cccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence             01111222222111111000       000000  0114566789999999999999999999999999998765

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=3e-41  Score=308.55  Aligned_cols=239  Identities=18%  Similarity=0.273  Sum_probs=177.4

Q ss_pred             cCCCCccccceecCceEEEEEE----ECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGV----FDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|+    ...+++.||||++........+.+.+|+.++++++||||+++            
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence            4679999999999999999999    456789999999986666666789999999999999999976            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++....
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~  165 (295)
T 3ugc_A           89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLP  165 (295)
T ss_dssp             EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred             EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence                                        458889999999999999   9999999999999999999999999998664


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc-h-HHH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR-V-MDI  264 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~-~-~~~  264 (356)
                      ..... ........++..|+|||.+.+..++.++||||||+++|+|++|..||.....   ............. . ..+
T Consensus       166 ~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  241 (295)
T 3ugc_A          166 QDKEF-FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA---EFMRMIGNDKQGQMIVFHL  241 (295)
T ss_dssp             -----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH---HHHHHHCTTCCTHHHHHHH
T ss_pred             CCcce-eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH---HHHhhhcCccccchhHHHH
Confidence            33211 1222334567789999999999999999999999999999999999864211   1111111100000 0 011


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      .........               ...+..++..+.+++.+||+.||++|||+.+|++.|+++.+.+
T Consensus       242 ~~~~~~~~~---------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          242 IELLKNNGR---------------LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHTTCC---------------CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHhccCc---------------CCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            111110000               0011244557889999999999999999999999999998765

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=6.9e-41  Score=308.78  Aligned_cols=228  Identities=23%  Similarity=0.313  Sum_probs=168.1

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ...++|++.+.||+|+||.||+|.+.  ++.||||++....  ....+.+.+|+.++++++||||+++            
T Consensus        34 i~~~~y~i~~~lG~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 3p86_A           34 IPWCDLNIKEKIGAGSFGTVHRAEWH--GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI  111 (309)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred             CChhHceeeeEeecCCCeEEEEEEEC--CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence            34567999999999999999999874  7899999987543  2334678899999999999999987            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.|++.||.|||+.+ .+|+||||||+||+++.++.+||+|||+++...
T Consensus       112 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~-~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  190 (309)
T 3p86_A          112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRN-PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA  190 (309)
T ss_dssp             EEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSS-SCCCCTTCCGGGEEECTTCCEEECCCC------
T ss_pred             EEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-CCEECCCCChhhEEEeCCCcEEECCCCCCcccc
Confidence                                        458889999999999875 459999999999999999999999999997543


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...    .......||+.|+|||++.+..++.++||||||+++|+|++|..||......  ..........         
T Consensus       191 ~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~--~~~~~~~~~~---------  255 (309)
T 3p86_A          191 STF----LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA--QVVAAVGFKC---------  255 (309)
T ss_dssp             ---------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH--HHHHHHHHSC---------
T ss_pred             ccc----cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcC---------
Confidence            221    2233467899999999999999999999999999999999999999743211  1111100000         


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                        .....                  +..+...+.+++.+||+.||.+|||+.+|++.|+.+.+...++
T Consensus       256 --~~~~~------------------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~  303 (309)
T 3p86_A          256 --KRLEI------------------PRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP  303 (309)
T ss_dssp             --CCCCC------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-----
T ss_pred             --CCCCC------------------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCC
Confidence              00000                  0123346789999999999999999999999999998876544

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.6e-41  Score=312.07  Aligned_cols=225  Identities=20%  Similarity=0.311  Sum_probs=175.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC---eEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR---AVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~---~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++   ..||||++.... ....+.+.+|+.+++.++||||+++            
T Consensus        48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  127 (325)
T 3kul_A           48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI  127 (325)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred             hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence            457999999999999999999997544   469999997543 3345678999999999999999986            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.+++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus       128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  204 (325)
T 3kul_A          128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD  204 (325)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred             EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence                                      568899999999999999   999999999999999999999999999876443


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ... ........+|+.|+|||++.+..++.++||||||+++|+|++ |..||......  ......            ..
T Consensus       205 ~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~------------~~  269 (325)
T 3kul_A          205 PDA-AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR--DVISSV------------EE  269 (325)
T ss_dssp             --C-CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHH------------HT
T ss_pred             ccc-eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHH------------Hc
Confidence            221 122233456778999999998899999999999999999999 99999643211  111111            11


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ......                  ...++..+.+++..||+.||.+|||+.+|++.|+.+.+..
T Consensus       270 ~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~  315 (325)
T 3kul_A          270 GYRLPA------------------PMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP  315 (325)
T ss_dssp             TCCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred             CCCCCC------------------CCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence            000000                  0133446789999999999999999999999999998654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=6.8e-41  Score=311.36  Aligned_cols=213  Identities=22%  Similarity=0.280  Sum_probs=171.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++....  ....+.+.+|+.+++.++||||+++             
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            4678999999999999999999999999999999997542  3345678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++....... 
T Consensus        93 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-  168 (328)
T 3fe3_A           93 MEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG-  168 (328)
T ss_dssp             ECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC-
T ss_pred             EECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCCHHHEEEcCCCCEEEeeccCceecCCCC-
Confidence                                    458899999999999999   9999999999999999999999999997654321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCC-CccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVS-TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          ......||+.|+|||++.+..+. .++|||||||++|+|++|+.||....     ....            .....
T Consensus       169 ----~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~------------~~~i~  227 (328)
T 3fe3_A          169 ----KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN-----LKEL------------RERVL  227 (328)
T ss_dssp             ----GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHH------------HHHHH
T ss_pred             ----ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC-----HHHH------------HHHHH
Confidence                22346789999999999988775 78999999999999999999997422     1111            11111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ......                +......+.+|+.+||..||.+|||+.++++.
T Consensus       228 ~~~~~~----------------p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          228 RGKYRI----------------PFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             HCCCCC----------------CTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             hCCCCC----------------CCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            111100                00122356799999999999999999999863

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.2e-40  Score=304.81  Aligned_cols=230  Identities=23%  Similarity=0.312  Sum_probs=175.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.++++++||||+++             
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            467999999999999999999999999999999986432   2334678899999999999999986             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++....... 
T Consensus        90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-  165 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMR---IVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS-  165 (294)
T ss_dssp             EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCSSSTTC-----
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCCEEEEeCCCcccccccc-
Confidence                                    558899999999999999   9999999999999999999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                        ........||+.|+|||.+.+..++.++||||||+++|+|++|+.||........ .........+ ....    .. 
T Consensus       166 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~-~~~~~~~~~~-~~~~----~~-  236 (294)
T 4eqm_A          166 --LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSI-AIKHIQDSVP-NVTT----DV-  236 (294)
T ss_dssp             -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHH-HHHHHSSCCC-CHHH----HS-
T ss_pred             --ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHhhccCC-Ccch----hc-
Confidence              1223346789999999999999999999999999999999999999974321110 0000000000 0000    00 


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-ChHHHHHHHHHhhhhhccc
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-NVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-s~~~vl~~L~~i~~~~~~~  334 (356)
                                           ....+..+.+++.+||+.||.+|| +++++.+.|+.+.......
T Consensus       237 ---------------------~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~~~  280 (294)
T 4eqm_A          237 ---------------------RKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENRAN  280 (294)
T ss_dssp             ---------------------CTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSSTT
T ss_pred             ---------------------ccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhccCC
Confidence                                 012344678999999999999999 8999999999887655443

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.9e-40  Score=313.34  Aligned_cols=225  Identities=20%  Similarity=0.292  Sum_probs=177.0

Q ss_pred             cCCCCccccceecCceEEEEEEEC-------CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD-------LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      .++|++.+.||+|+||.||+|.+.       .++..||||+++.... ...+.+.+|+.+++.+ +||||+++       
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            467999999999999999999974       3457899999975432 3446789999999999 89999986       


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.||+.||.|||+++   |+||||||+|||+
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll  236 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLV  236 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeccccchhhEEE
Confidence                                                          126789999999999999   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~  247 (356)
                      +.++.+||+|||+++.......  ........+|+.|+|||++.+..++.++|||||||++|||++ |..||......  
T Consensus       237 ~~~~~~kl~DFG~a~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~--  312 (370)
T 2psq_A          237 TENNVMKIADFGLARDINNIDY--YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--  312 (370)
T ss_dssp             CTTCCEEECCCSSCEETTCCCT--TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--
T ss_pred             CCCCCEEEccccCCcccCcccc--eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH--
Confidence            9999999999999986543221  122233556889999999999999999999999999999999 99999743211  


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .+.....            .......                  +..+...+.+++.+||+.||.+|||+.+|++.|+.+
T Consensus       313 ~~~~~~~------------~~~~~~~------------------~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~i  362 (370)
T 2psq_A          313 ELFKLLK------------EGHRMDK------------------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  362 (370)
T ss_dssp             GHHHHHH------------TTCCCCC------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHh------------cCCCCCC------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            1111111            1100000                  113444678999999999999999999999999999


Q ss_pred             hhhhc
Q 039228          328 NNILL  332 (356)
Q Consensus       328 ~~~~~  332 (356)
                      .....
T Consensus       363 l~~~~  367 (370)
T 2psq_A          363 LTLTT  367 (370)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            87553

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.5e-41  Score=319.22  Aligned_cols=225  Identities=23%  Similarity=0.323  Sum_probs=177.6

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ...++|.+.+.||+|+||.||+|.+..+++.||||++..... .....+.+|+.+|++++||||+++             
T Consensus       111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  190 (377)
T 3cbl_A          111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIV  190 (377)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEE
Confidence            345679999999999999999999998899999999875422 233568899999999999999987             


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.|++.||+|||+.+   |+||||||+|||++.++.+||+|||+++......
T Consensus       191 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~  267 (377)
T 3cbl_A          191 MELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSREEADGV  267 (377)
T ss_dssp             EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence                                     458899999999999999   9999999999999999999999999997543211


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                        .........++..|+|||.+.+..++.++|||||||++|||++ |..||......  .....            +...
T Consensus       268 --~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~------------~~~~  331 (377)
T 3cbl_A          268 --YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREF------------VEKG  331 (377)
T ss_dssp             --EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHH------------HHTT
T ss_pred             --eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH------------HHcC
Confidence              1111222345778999999998889999999999999999998 99999743211  11111            1111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .....                  +..++..+.+++.+||+.||++|||+.+|++.|+++.+.
T Consensus       332 ~~~~~------------------~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          332 GRLPC------------------PELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             CCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCC------------------CCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence            00000                  013445678999999999999999999999999998764

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1e-39  Score=303.42  Aligned_cols=233  Identities=22%  Similarity=0.300  Sum_probs=171.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhh--cCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKN--ICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+.  ++.||||++...   ....+..|..++..  ++||||+++             
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  109 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ  109 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred             cccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence            3467999999999999999999986  799999998643   23445556665554  489999876             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhc--------CCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHH--------CQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~--------~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                 +.++.+++.||.|||+.        +   |+||||||+|||++.++.+||+||
T Consensus       110 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~kl~Df  186 (337)
T 3mdy_A          110 LYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA---IAHRDLKSKNILVKKNGTCCIADL  186 (337)
T ss_dssp             EEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCC---EECSCCCGGGEEECTTSCEEECCC
T ss_pred             eEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---EEecccchHHEEECCCCCEEEEeC
Confidence                                       45889999999999998        7   999999999999999999999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhcCCCCCCc------cchHhHHHHHHHHHcC----------CCCCCccc
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTN------GDAYNYGILLLEMVTR----------RKPIDFMF  243 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------sDiwSlG~~l~elltg----------~~Pf~~~~  243 (356)
                      |++..................||+.|+|||++.+...+..      +|||||||++|||++|          ..||....
T Consensus       187 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~  266 (337)
T 3mdy_A          187 GLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLV  266 (337)
T ss_dssp             TTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhc
Confidence            9997664433322223345678999999999988776665      8999999999999999          56665443


Q ss_pred             cCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          244 EGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .................        +......             ......++..+.+++.+||+.||.+|||+.+|++.
T Consensus       267 ~~~~~~~~~~~~~~~~~--------~~~~~~~-------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          267 PSDPSYEDMREIVCIKK--------LRPSFPN-------------RWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             CSSCCHHHHHHHHTTSC--------CCCCCCG-------------GGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             CCCCchhhhHHHHhhhc--------cCccccc-------------cchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            33323222221111000        0000000             00012677789999999999999999999999999


Q ss_pred             HHHhhhhh
Q 039228          324 LQSVNNIL  331 (356)
Q Consensus       324 L~~i~~~~  331 (356)
                      |+.+.++.
T Consensus       326 L~~l~~~~  333 (337)
T 3mdy_A          326 LAKMSESQ  333 (337)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhhc
Confidence            99998764

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.7e-40  Score=301.82  Aligned_cols=241  Identities=20%  Similarity=0.236  Sum_probs=172.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++.....  .....+.+|+.++++++||||+++               
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            579999999999999999999999999999999975432  334678899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++......   
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~---ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~---  155 (292)
T 3o0g_A           82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPV---  155 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCSCC---
T ss_pred             cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEeecccceecCCcc---
Confidence                                  458899999999999999   9999999999999999999999999998654322   


Q ss_pred             ccCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......||+.|+|||++.+.. ++.++|||||||++|+|++|..||.........+..............+-...-..
T Consensus       156 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  234 (292)
T 3o0g_A          156 -RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP  234 (292)
T ss_dssp             -SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred             -ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence             2233457799999999998765 79999999999999999998888643222222222222221111000000000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .........   ...............+.+++.+||+.||++|||+.|+++
T Consensus       235 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          235 DYKPYPMYP---ATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             TCCCCCCCC---TTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccccc---CCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence            000000000   000000011123446789999999999999999999986

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=3.9e-40  Score=320.13  Aligned_cols=244  Identities=20%  Similarity=0.135  Sum_probs=172.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++...  .....+.+.+|+.+|+.++||||+++              
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            57899999999999999999999999999999999754  33445678899999999999999976              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus       141 ~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  217 (464)
T 3ttj_A          141 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS  217 (464)
T ss_dssp             EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCCC-----C
T ss_pred             eEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChHhEEEeCCCCEEEEEEEeeeecCCC
Confidence                                      348899999999999999   999999999999999999999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH------
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM------  262 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~------  262 (356)
                           .......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+.............      
T Consensus       218 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~-~~~~~i~~~lg~p~~~~~~~~~  291 (464)
T 3ttj_A          218 -----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQLGTPCPEFMKKLQ  291 (464)
T ss_dssp             -----CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCSCCHHHHTTSC
T ss_pred             -----cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHHHcc
Confidence                 2233467899999999999999999999999999999999999999753211 1111211111110000      


Q ss_pred             HHhhhhhccccccccccccchhhh----hchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRK----TKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ......+...........+.....    ............+.+|+.+||..||++|||+.|+++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          292 PTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             HHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            000000000000000000000000    0001112235578899999999999999999999873

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=3.4e-40  Score=306.60  Aligned_cols=230  Identities=18%  Similarity=0.177  Sum_probs=179.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++.....  .+.+.+|+.+++.+ +||||+++               
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            4679999999999999999999999999999999875432  34688999999999 89999976               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc-----eEEccccccccccc
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF-----AHIGDFELARFRQE  187 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~-----~kl~Dfg~a~~~~~  187 (356)
                                            +.++.|++.||.|||+.+   |+||||||+|||++.++.     +||+|||+++....
T Consensus        86 ~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~  162 (330)
T 2izr_A           86 LLGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYID  162 (330)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBC
T ss_pred             eCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCCHHHeeeccCCCCCCceEEEEEcccceeeec
Confidence                                  558899999999999999   999999999999998887     99999999987644


Q ss_pred             CCCCC---ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          188 VSNPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       188 ~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      .....   ........||+.|+|||++.+..++.++|||||||++|||++|..||.......  .......        +
T Consensus       163 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~--~~~~~~~--------i  232 (330)
T 2izr_A          163 PETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT--LKERYQK--------I  232 (330)
T ss_dssp             TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS--HHHHHHH--------H
T ss_pred             CCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc--HHHHHHH--------H
Confidence            32211   112345789999999999999999999999999999999999999997543222  1111110        0


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ..........               ......+ .+.+++..||+.||.+||++.+|++.|+.+.+..
T Consensus       233 ~~~~~~~~~~---------------~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~  283 (330)
T 2izr_A          233 GDTKRATPIE---------------VLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK  283 (330)
T ss_dssp             HHHHHHSCHH---------------HHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HhhhccCCHH---------------HHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence            0000000000               0000123 6889999999999999999999999999998765

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=309.49  Aligned_cols=224  Identities=22%  Similarity=0.342  Sum_probs=169.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEE----EEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVV----AIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~v----avK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.|    |+|.+... .....+.+.+|+.+++.++||||+++           
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   93 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQL   93 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceE
Confidence            467999999999999999999998777654    66666433 33456789999999999999999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus        94 v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~  170 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE  170 (327)
T ss_dssp             EECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCTTC-------
T ss_pred             EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCC---CcCCCCCHHHEEEcCCCCEEEccCcceeEccCc
Confidence                                      558899999999999999   999999999999999999999999999866433


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..  ........+|+.|+|||.+.+..++.++|||||||++|+|++ |..||......  .+....            ..
T Consensus       171 ~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~------------~~  234 (327)
T 3lzb_A          171 EK--EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSIL------------EK  234 (327)
T ss_dssp             -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHH------------HT
T ss_pred             cc--cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHH------------Hc
Confidence            22  122233456788999999999999999999999999999999 99999753222  111111            11


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ......                  ...+...+.+++.+||+.||.+|||+.+|++.|+.+....
T Consensus       235 ~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  280 (327)
T 3lzb_A          235 GERLPQ------------------PPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             TCCCCC------------------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred             CCCCCC------------------CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence            110000                  0123345789999999999999999999999999998543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.2e-40  Score=307.31  Aligned_cols=218  Identities=21%  Similarity=0.268  Sum_probs=171.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+.+|+.+++.++||||+++               
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            5789999999999999999999999999999999875432 234568899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++........  
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~--  160 (323)
T 3tki_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR--  160 (323)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTE--
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccccchHHEEEeCCCCEEEEEeeccceeccCCc--
Confidence                                  568999999999999999   99999999999999999999999999986543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ........||+.|+|||++.+..+ +.++|||||||++|+|++|..||............+........           
T Consensus       161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~-----------  229 (323)
T 3tki_A          161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN-----------  229 (323)
T ss_dssp             ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTST-----------
T ss_pred             ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCC-----------
Confidence            222345678999999999988775 67899999999999999999999754333222222211110000           


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       .                  .......+.+|+.+||+.||.+|||+.|+++.
T Consensus       230 -~------------------~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h  262 (323)
T 3tki_A          230 -P------------------WKKIDSAPLALLHKILVENPSARITIPDIKKD  262 (323)
T ss_dssp             -T------------------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             -c------------------cccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence             0                  00223356789999999999999999999763

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=8.2e-40  Score=303.13  Aligned_cols=213  Identities=21%  Similarity=0.215  Sum_probs=171.5

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      |...+.||+|+||.||+|++..+++.||||++........+.+.+|+.+++.++||||+++                   
T Consensus        47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~  126 (321)
T 2c30_A           47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQG  126 (321)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred             hhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCC
Confidence            6777899999999999999998899999999987666667789999999999999999986                   


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......    ....
T Consensus       127 ~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~----~~~~  199 (321)
T 2c30_A          127 GALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV----PKRK  199 (321)
T ss_dssp             CBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS----CCBC
T ss_pred             CCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEECCCCcEEEeeeeeeeecccCc----cccc
Confidence                             568899999999999999   9999999999999999999999999998654322    1223


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLA  277 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  277 (356)
                      ...||+.|+|||++.+..++.++||||||+++|+|++|+.||.....  ...........+..        +..      
T Consensus       200 ~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--~~~~~~~~~~~~~~--------~~~------  263 (321)
T 2c30_A          200 SLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKRLRDSPPPK--------LKN------  263 (321)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSSCCC--------CTT------
T ss_pred             cccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHhcCCCCC--------cCc------
Confidence            46789999999999999999999999999999999999999964211  11111111100000        000      


Q ss_pred             ccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          278 GTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                    .......+.+++.+||+.||++|||+.++++.
T Consensus       264 --------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          264 --------------SHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             --------------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             --------------cccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                          01223357899999999999999999999873

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.4e-40  Score=308.64  Aligned_cols=224  Identities=18%  Similarity=0.278  Sum_probs=172.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeE----EEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAV----VAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.    ||+|.+.... ......+.+|+.+++.++||||+++           
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQL   91 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEE
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEE
Confidence            45799999999999999999999877665    7777775332 2334567789999999999999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus        92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  168 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPPD  168 (325)
T ss_dssp             EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTT---CCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred             EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCC---CCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence                                      568899999999999999   999999999999999999999999999876443


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..  ........++..|+|||++.+..++.++||||||+++|+|++ |..||......  .........           
T Consensus       169 ~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~-----------  233 (325)
T 3kex_A          169 DK--QLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKG-----------  233 (325)
T ss_dssp             TT--CCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHHHTT-----------
T ss_pred             cc--cccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHHHcC-----------
Confidence            22  122334567889999999998899999999999999999999 99999753221  111111111           


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                       ......                  ..+...+.+++.+||+.||.+|||+.+|++.|+.+....
T Consensus       234 -~~~~~~------------------~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~  278 (325)
T 3kex_A          234 -ERLAQP------------------QICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARDP  278 (325)
T ss_dssp             -CBCCCC------------------TTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred             -CCCCCC------------------CcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence             000000                  012224578999999999999999999999999987543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.2e-40  Score=315.08  Aligned_cols=225  Identities=20%  Similarity=0.364  Sum_probs=165.3

Q ss_pred             cCCCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|.+.+.||+|+||.||+|++.   .++..||||+++... ....+.+.+|+.++++++||||+++            
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            357999999999999999999986   456789999997543 3344679999999999999999987            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus       124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  200 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDD  200 (373)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence                                      568899999999999999   999999999999999999999999999866433


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ... ........++..|+|||++.+..++.++||||||+++|||++ |+.||.....     ...         ...+..
T Consensus       201 ~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~-----~~~---------~~~i~~  265 (373)
T 2qol_A          201 PEA-AYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN-----QDV---------IKAVDE  265 (373)
T ss_dssp             --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH-----HHH---------HHHHHT
T ss_pred             Ccc-ceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH-----HHH---------HHHHHc
Confidence            211 111222345778999999999999999999999999999998 9999964321     111         111111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ......                  ...++..+.+++.+||+.||.+||++.+|++.|+.+....
T Consensus       266 ~~~~~~------------------~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~  311 (373)
T 2qol_A          266 GYRLPP------------------PMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP  311 (373)
T ss_dssp             TEECCC------------------CTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred             CCCCCC------------------CccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence            111000                  0134456889999999999999999999999999997654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=4.5e-40  Score=304.27  Aligned_cols=242  Identities=21%  Similarity=0.269  Sum_probs=158.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++..... ...+.+.+|+.++++++||||+++               
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            5679999999999999999999999999999999975432 334678899999999999999986               


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++....
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  160 (317)
T 2pmi_A           84 FMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARAFGI  160 (317)
T ss_dssp             CCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCSSCEETTS
T ss_pred             ecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCChHHeEEcCCCCEEECcCccceecCC
Confidence                                       336679999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCchHHH
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNRVMDI  264 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~  264 (356)
                      ..    .......+|+.|+|||++.+ ..++.++|||||||++|+|++|+.||....... .+........  +......
T Consensus       161 ~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~  235 (317)
T 2pmi_A          161 PV----NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEE-QLKLIFDIMGTPNESLWPS  235 (317)
T ss_dssp             CC----CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCTTTCGG
T ss_pred             Cc----ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChhHhhh
Confidence            22    12234567999999999976 468999999999999999999999997533211 1111111111  0111000


Q ss_pred             hhhh--hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLV--LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +...  .......  .....+...............+.+++.+||+.||++|||+.++++
T Consensus       236 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          236 VTKLPKYNPNIQQ--RPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             GGGCTTCCTTCCC--CCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhhhhhccccccc--ccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence            0000  0000000  000000000000000123346789999999999999999999875

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.1e-39  Score=298.14  Aligned_cols=231  Identities=16%  Similarity=0.156  Sum_probs=180.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF--------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l--------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++....  ..+.+.+|+.+++.+ +|+|++++              
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   85 (298)
T 1csn_A            8 VGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVI   85 (298)
T ss_dssp             ETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEE
Confidence            3567999999999999999999999999999999986432  234678899999999 68888765              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc-----eEEcccccccccc
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF-----AHIGDFELARFRQ  186 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~-----~kl~Dfg~a~~~~  186 (356)
                                             ..++.|++.||.|||+.+   |+||||||+||+++.++.     +||+|||+++...
T Consensus        86 e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~  162 (298)
T 1csn_A           86 DLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR  162 (298)
T ss_dssp             ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred             EecCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence                                   568999999999999999   999999999999987776     9999999998765


Q ss_pred             cCCCCC---ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCcc--HHHHHHHhCCCch
Q 039228          187 EVSNPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN--LHNFARMAFPNRV  261 (356)
Q Consensus       187 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~--~~~~~~~~~~~~~  261 (356)
                      ......   ........||+.|+|||++.+..++.++||||||+++|+|++|+.||.........  +............
T Consensus       163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  242 (298)
T 1csn_A          163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL  242 (298)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH
T ss_pred             cccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccH
Confidence            433211   12234567899999999999999999999999999999999999999754322111  0110000000000


Q ss_pred             HHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          262 MDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       262 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      ..     +                      ...++..+.+++..||+.||++|||+.+|++.|+++.+.+.
T Consensus       243 ~~-----~----------------------~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~  286 (298)
T 1csn_A          243 RE-----L----------------------CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN  286 (298)
T ss_dssp             HH-----H----------------------TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             HH-----H----------------------HhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence            00     0                      01234467899999999999999999999999999988763

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=7.4e-40  Score=302.05  Aligned_cols=239  Identities=21%  Similarity=0.252  Sum_probs=170.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+.. ++.||+|++.....  .....+.+|+.++++++||||+++             
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   97 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLV   97 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEETT-SCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEE
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEECC-CCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEE
Confidence            35789999999999999999999964 79999999864422  234678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++...... 
T Consensus        98 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~-  173 (311)
T 3niz_A           98 FEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLARAFGIPV-  173 (311)
T ss_dssp             EECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEETTSCC-
T ss_pred             EcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCchHhEEECCCCCEEEccCcCceecCCCc-
Confidence                                    458899999999999999   9999999999999999999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC---chHHHhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN---RVMDIVN  266 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~---~~~~~~~  266 (356)
                         .......+|+.|+|||++.+ ..++.++|||||||++|+|++|+.||......+ .+..........   ......+
T Consensus       174 ---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~  249 (311)
T 3niz_A          174 ---RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD-QLPKIFSILGTPNPREWPQVQE  249 (311)
T ss_dssp             ---C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT-HHHHHHHHHCCCCTTTSGGGTT
T ss_pred             ---ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHHCCCChHHhhhhhc
Confidence               22233567999999999876 568999999999999999999999997644332 222222221111   1000000


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ......     ..........+..........+.+|+.+||+.||++|||+.|+++
T Consensus       250 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          250 LPLWKQ-----RTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             SHHHHS-----CCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cchhhh-----cccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            000000     000000000001111123346789999999999999999999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=4.1e-40  Score=304.80  Aligned_cols=226  Identities=19%  Similarity=0.329  Sum_probs=163.8

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCe---EEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRA---VVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~---~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..++.   .||||++...  .....+.+.+|+.++++++||||+++         
T Consensus        20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   99 (323)
T 3qup_A           20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA   99 (323)
T ss_dssp             CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred             cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence            345689999999999999999999877654   8999998754  33445789999999999999999875         


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          135 ----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       135 ----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                                                              +.++.|++.||.|||+.+   |+||||||+||+++.++.+
T Consensus       100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~Dikp~NIli~~~~~~  176 (323)
T 3qup_A          100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTV  176 (323)
T ss_dssp             -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCE
T ss_pred             ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCC---cccCCCCcceEEEcCCCCE
Confidence                                                    347889999999999999   9999999999999999999


Q ss_pred             EEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHH
Q 039228          175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~  253 (356)
                      ||+|||+++.......  ........+++.|+|||.+.+..++.++|||||||++|+|++ |..||......  ......
T Consensus       177 kl~Dfg~a~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~  252 (323)
T 3qup_A          177 CVADFGLSRKIYSGDY--YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--EIYNYL  252 (323)
T ss_dssp             EECCCCC-------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHH
T ss_pred             EEeecccccccccccc--ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--HHHHHH
Confidence            9999999986543221  122223456788999999999999999999999999999999 99999753221  111111


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      .           .......                   ...++..+.+++.+||+.||++|||+.+|++.|+++....
T Consensus       253 ~-----------~~~~~~~-------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          253 I-----------GGNRLKQ-------------------PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             H-----------TTCCCCC-------------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             h-----------cCCCCCC-------------------CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            1           0000000                   0133346789999999999999999999999999998765

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.7e-40  Score=301.57  Aligned_cols=225  Identities=27%  Similarity=0.426  Sum_probs=166.1

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ...++|++.+.||+|+||.||+|.+.   ..||+|+++...  ....+.+.+|+.+++.++||||+++            
T Consensus        21 i~~~~y~~~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv   97 (289)
T 3og7_A           21 IPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIV   97 (289)
T ss_dssp             CCTTSCEEEEEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEE
T ss_pred             cCccceeeeeEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEE
Confidence            34578999999999999999999865   359999987543  2344678999999999999999976            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......
T Consensus        98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  174 (289)
T 3og7_A           98 TQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS  174 (289)
T ss_dssp             EECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred             EEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---cccccCccceEEECCCCCEEEccceecccccccc
Confidence                                     468899999999999999   9999999999999999999999999997654322


Q ss_pred             CCCccCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh-CCCchHHHh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA-FPNRVMDIV  265 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~~~~~~~  265 (356)
                      .  ........||+.|+|||.+.   +..++.++||||||+++|+|++|+.||....... .+....... .......  
T Consensus       175 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~--  249 (289)
T 3og7_A          175 G--SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMVGRGSLSPDLSK--  249 (289)
T ss_dssp             -----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH-HHHHHHHHTSCCCCTTS--
T ss_pred             c--cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH-HHHHHhcccccCcchhh--
Confidence            1  12233466899999999986   5678889999999999999999999997532211 111111111 1110000  


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                                               ....++..+.+++.+||+.||.+|||+.+|++.|+++.+
T Consensus       250 -------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          250 -------------------------VRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             -------------------------SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             -------------------------ccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence                                     001334568899999999999999999999999998864

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.5e-39  Score=306.09  Aligned_cols=215  Identities=15%  Similarity=0.174  Sum_probs=170.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc------chHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG------ASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .+.|++.+.||+|+||.||+|++..+++.||+|++......      ..+.+.+|+.+|+.++||||+++          
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            46799999999999999999999999999999999754322      34678999999999999999987          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC----ceEEccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL----FAHIGDFELAR  183 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~----~~kl~Dfg~a~  183 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+|||++.++    .+||+|||++.
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~~~vkl~DFG~a~  167 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCSSCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEeCCCCCccCEEEEecCCce
Confidence                                       568899999999999999   99999999999998777    79999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ......     ......||+.|+|||++.+..++.++|||||||++|+|++|..||.....     ......        
T Consensus       168 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~-----~~~~~~--------  229 (361)
T 2yab_A          168 EIEDGV-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLAN--------  229 (361)
T ss_dssp             ECCTTC-----CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHH--------
T ss_pred             EcCCCC-----ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH--------
Confidence            654321     22346789999999999999999999999999999999999999964221     111110        


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          .....+..        ....    .......+.+++.+||..||.+|||+.++++
T Consensus       230 ----i~~~~~~~--------~~~~----~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          230 ----ITAVSYDF--------DEEF----FSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             ----HHTTCCCC--------CHHH----HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ----HHhcCCCC--------Cchh----ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                00000000        0000    0022335789999999999999999999985

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=7.3e-40  Score=305.48  Aligned_cols=213  Identities=20%  Similarity=0.214  Sum_probs=170.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|+...+++.||+|+++..   .......+.+|+.+++.++||||+++             
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            46799999999999999999999999999999999753   23345678899999999999999986             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+++   |+||||||+|||++.+|.+||+|||+++...... 
T Consensus        84 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~-  159 (337)
T 1o6l_A           84 MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG-  159 (337)
T ss_dssp             EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT-
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCCHHHEEECCCCCEEEeeccchhhcccCC-
Confidence                                    457889999999999999   9999999999999999999999999997533221 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .......||+.|+|||++.+..++.++|||||||++|||++|..||.....     .....        .+....+.
T Consensus       160 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~--------~i~~~~~~  223 (337)
T 1o6l_A          160 ---ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLFE--------LILMEEIR  223 (337)
T ss_dssp             ---CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHH--------HHHHCCCC
T ss_pred             ---CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH-----HHHHH--------HHHcCCCC
Confidence               223457899999999999999999999999999999999999999964211     11110        01100000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~~  323 (356)
                        .+                  ......+.+++.+||+.||.+||     ++.+|++.
T Consensus       224 --~p------------------~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          224 --FP------------------RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             --CC------------------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             --CC------------------CCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence              00                  02233578999999999999999     88888763

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=313.29  Aligned_cols=224  Identities=23%  Similarity=0.329  Sum_probs=173.9

Q ss_pred             cCCCCccccceecCceEEEEEEE-----CCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|++.+.||+|+||.||+|.+     ..++..||||+++... ......+.+|+.++++++||||+++          
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            45799999999999999999994     4467899999996442 3344578899999999999999986          


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC---ceEEc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL---FAHIG  177 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~---~~kl~  177 (356)
                                                        +.++.||+.||.|||+.+   |+||||||+|||++.++   .+||+
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kL~  226 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIG  226 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEEecCCCCceEEEC
Confidence                                              358899999999999999   99999999999999554   59999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHh
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      |||+++.......  ........+|+.|+|||++.+..++.++|||||||++|||++ |..||.....  ..+....   
T Consensus       227 DFG~a~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~~~~~~i---  299 (367)
T 3l9p_A          227 DFGMARDIYRAGY--YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFV---  299 (367)
T ss_dssp             CCHHHHHHHHHSS--CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHH---
T ss_pred             CCccccccccccc--cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHH---
Confidence            9999986533221  122334567889999999998999999999999999999998 9999964321  1111111   


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                               ........                  ...++..+.+|+.+||+.||.+|||+.+|++.|+.+.+..
T Consensus       300 ---------~~~~~~~~------------------~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          300 ---------TSGGRMDP------------------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             ---------HTTCCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             ---------HcCCCCCC------------------CccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence                     11000000                  0133446789999999999999999999999999987654

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=300.01  Aligned_cols=220  Identities=22%  Similarity=0.301  Sum_probs=169.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+.  ++.||+|.+...  ...+.+.+|+.++++++||||+++                
T Consensus         7 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~   82 (307)
T 2eva_A            7 YKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAE   82 (307)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCT
T ss_pred             HhHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCC
Confidence            356899999999999999999986  689999998643  345678999999999999999976                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhh---cCCCcEEecCCCCCCeEeCCCCc-eEEcccccccccccC
Q 039228          135 ----------------------ISIAIDVASALDYLHH---HCQELILHCDPKPSNVLLDNDLF-AHIGDFELARFRQEV  188 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~---~~~~~iiH~Dlkp~NIll~~~~~-~kl~Dfg~a~~~~~~  188 (356)
                                            +.++.|++.||.|||+   ++   |+||||||+||+++.++. +||+|||++......
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~---ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~  159 (307)
T 2eva_A           83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA---LIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH  159 (307)
T ss_dssp             TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSC---CCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred             CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCC---eecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence                                  4578899999999999   66   999999999999998886 799999999754321


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                             .....||+.|+|||++.+..++.++||||||+++|+|++|+.||..................           
T Consensus       160 -------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~-----------  221 (307)
T 2eva_A          160 -------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT-----------  221 (307)
T ss_dssp             ------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC-----------
T ss_pred             -------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC-----------
Confidence                   12345899999999999999999999999999999999999999743222111110000000           


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                       ....                  ...++..+.+++.+||+.||.+|||+.+|++.|+.+...+...
T Consensus       222 -~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~  268 (307)
T 2eva_A          222 -RPPL------------------IKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGA  268 (307)
T ss_dssp             -CCCC------------------BTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCT
T ss_pred             -CCCc------------------ccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCC
Confidence             0000                  0123345789999999999999999999999999998887554

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-39  Score=297.07  Aligned_cols=228  Identities=23%  Similarity=0.329  Sum_probs=176.1

Q ss_pred             CCCccccceecCceEEEEEEECCCC---eEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNR---AVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~---~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .|.+.+.||+|+||.||+|.+..++   ..||+|.+..... ...+.+.+|+.+++.++||||+++              
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            3666789999999999999975543   3799999875433 345678899999999999999987              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++......
T Consensus       102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  178 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESFTVKVADFGLARDILDRE  178 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred             EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence                                     468889999999999999   9999999999999999999999999998654332


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                      ...........++..|+|||.+.+..++.++||||||+++|+|++|..|+..... ............            
T Consensus       179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~-~~~~~~~~~~~~------------  245 (298)
T 3pls_A          179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID-PFDLTHFLAQGR------------  245 (298)
T ss_dssp             GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC-GGGHHHHHHTTC------------
T ss_pred             ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCC-HHHHHHHhhcCC------------
Confidence            2222334456678999999999999999999999999999999996555432211 111211111111            


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                      .....                  ..++..+.+++.+||+.||.+|||+.++++.|+++.+.+...
T Consensus       246 ~~~~~------------------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~  292 (298)
T 3pls_A          246 RLPQP------------------EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD  292 (298)
T ss_dssp             CCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred             CCCCC------------------ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence            00000                  123346789999999999999999999999999999887554

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=7e-41  Score=310.75  Aligned_cols=238  Identities=19%  Similarity=0.240  Sum_probs=180.1

Q ss_pred             cCCCCccccceecCceEEEEEEE----CCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|++    ..+++.||||++........+.+.+|+.++++++||||+++            
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence            35799999999999999999994    56789999999987666666789999999999999999986            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++....
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~  178 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLP  178 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred             EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChhhEEECCCCCEEEcccccceecc
Confidence                                        458889999999999999   9999999999999999999999999998764


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC----CCchH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF----PNRVM  262 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~----~~~~~  262 (356)
                      ..... ........+|..|+|||++.+..++.++||||||+++|+|++|..||.....      .......    .....
T Consensus       179 ~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~------~~~~~~~~~~~~~~~~  251 (327)
T 3lxl_A          179 LDKDY-YVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSA------EFLRMMGCERDVPALS  251 (327)
T ss_dssp             TTCSE-EECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HHHHHCC----CCHHH
T ss_pred             cCCcc-ceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccc------hhhhhcccccccccHH
Confidence            33221 1223345678889999999988899999999999999999999999863211      1111100    01111


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      .+.........               ......++..+.+++.+||+.||.+|||+.+|++.|+.+......
T Consensus       252 ~~~~~~~~~~~---------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~  307 (327)
T 3lxl_A          252 RLLELLEEGQR---------------LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRG  307 (327)
T ss_dssp             HHHHHHHTTCC---------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC------
T ss_pred             HHHHHhhcccC---------------CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcC
Confidence            11111111000               001113455688999999999999999999999999999876543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=5.1e-40  Score=299.01  Aligned_cols=220  Identities=22%  Similarity=0.358  Sum_probs=172.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccc-------hHHHHHHHHHHhhcCCCChHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA-------SKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.......       .+.+.+|+.++++++||||+++         
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   97 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPR   97 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTE
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCe
Confidence            468999999999999999999999999999999986443221       1678899999999999999986         


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc-----eEEcccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF-----AHIGDFELA  182 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~-----~kl~Dfg~a  182 (356)
                                                 +.++.|++.||.|||+.+ .+|+||||||+||+++.++.     +||+|||++
T Consensus        98 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~-~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~  176 (287)
T 4f0f_A           98 MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQN-PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS  176 (287)
T ss_dssp             EEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTC
T ss_pred             EEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcceEEEeccCCCCceeEEeCCCCcc
Confidence                                       568899999999999875 45999999999999988776     999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhc--CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDL--GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      +....       ......||+.|+|||++.  ...++.++||||||+++|+|++|..||.................    
T Consensus       177 ~~~~~-------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~----  245 (287)
T 4f0f_A          177 QQSVH-------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREE----  245 (287)
T ss_dssp             BCCSS-------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHS----
T ss_pred             ccccc-------cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhcc----
Confidence            74322       223356899999999983  45678899999999999999999999975433222111111110    


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                             .......                  ..++..+.+++.+||+.||.+|||+.+|++.|+++
T Consensus       246 -------~~~~~~~------------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          246 -------GLRPTIP------------------EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             -------CCCCCCC------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             -------CCCCCCC------------------cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence                   0100000                  13344678999999999999999999999999864

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.4e-39  Score=295.42  Aligned_cols=231  Identities=19%  Similarity=0.215  Sum_probs=177.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||||++.....  ...+..|+.+++.++|++++..               
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            35789999999999999999999999999999998764322  2457889999999999887654               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe---CCCCceEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                             +.++.|++.||.|||+++   |+||||||+|||+   +.++.+||+|||+++.....
T Consensus        85 e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  161 (296)
T 4hgt_A           85 ELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             ECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             EccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeeeeccCCCCeEEEecCccceeccCc
Confidence                                   568899999999999999   9999999999999   78999999999999876543


Q ss_pred             CCCC---ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCc--cHHHHHHHhCCCchHH
Q 039228          189 SNPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL--NLHNFARMAFPNRVMD  263 (356)
Q Consensus       189 ~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~--~~~~~~~~~~~~~~~~  263 (356)
                      ....   ........||+.|+|||.+.+..++.++|||||||++|+|++|+.||........  .+........+.... 
T Consensus       162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (296)
T 4hgt_A          162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIE-  240 (296)
T ss_dssp             TTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHH-
T ss_pred             ccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhh-
Confidence            3211   1233456789999999999999999999999999999999999999976443221  111111111000000 


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                          .+.                      ...+..+.+++..||+.||++|||+.+|++.|+.+.+...
T Consensus       241 ----~~~----------------------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~  283 (296)
T 4hgt_A          241 ----VLC----------------------KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             ----HHT----------------------TTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             ----hhh----------------------ccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence                000                      0223467899999999999999999999999999987763

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=3.8e-40  Score=319.53  Aligned_cols=226  Identities=21%  Similarity=0.344  Sum_probs=179.8

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .+....++|++.+.||+|+||.||+|.+.. +..||||+++... ...+.+.+|+.+|+.++||||+++           
T Consensus       182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~l  259 (454)
T 1qcf_A          182 AWEIPRESLKLEKKLGAGQFGEVWMATYNK-HTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYI  259 (454)
T ss_dssp             CSBCCGGGEEEEEEEECCSSEEEEEEEETT-TEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEE
T ss_pred             ceeechHHeEEEEEcccCCceEEEEEEECC-ccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEE
Confidence            344556789999999999999999999975 5889999997543 346789999999999999999986           


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++....
T Consensus       260 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  336 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVCKIADFGLARVIED  336 (454)
T ss_dssp             EECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTCCEEECSTTGGGGBCC
T ss_pred             EEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEECCCCcEEEeeCCCceEcCC
Confidence                                       458899999999999999   99999999999999999999999999986532


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ..   ........++..|+|||++.+..++.++|||||||++|||+| |+.||......  .........          
T Consensus       337 ~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i~~~----------  401 (454)
T 1qcf_A          337 NE---YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALERG----------  401 (454)
T ss_dssp             HH---HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHHT----------
T ss_pred             Cc---eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC----------
Confidence            21   112233446788999999998899999999999999999999 99999743211  111111111          


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                        ....                  .+..++..+.+|+.+||+.||++|||+.+|++.|+.+....
T Consensus       402 --~~~~------------------~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~  446 (454)
T 1qcf_A          402 --YRMP------------------RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT  446 (454)
T ss_dssp             --CCCC------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred             --CCCC------------------CCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence              0000                  01134557889999999999999999999999999887654

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.8e-40  Score=311.83  Aligned_cols=170  Identities=23%  Similarity=0.344  Sum_probs=135.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcC-CCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNIC-HRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~l------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++...  .....+.+.+|+.+++.+. ||||+++            
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            357899999999999999999999999999999998643  2344567889999999998 9999986            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++......
T Consensus        87 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  163 (388)
T 3oz6_A           87 YLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIR  163 (388)
T ss_dssp             EEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEESSSCC
T ss_pred             EEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCC---EEeCCCCHHHeEEcCCCCEEecCCcccccccccc
Confidence                                     347889999999999999   9999999999999999999999999998653211


Q ss_pred             C-----------------CCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          190 N-----------------PTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       190 ~-----------------~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      .                 ..........||+.|+|||++.+ ..++.++|||||||++|||++|++||...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          164 RVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             CCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence            1                 01122344679999999999986 67899999999999999999999999753

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=3.7e-39  Score=294.33  Aligned_cols=231  Identities=19%  Similarity=0.216  Sum_probs=181.0

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||||++.....  .+.+.+|+.+++.++|++++..               
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence            35789999999999999999999999999999999875432  3568899999999999886643               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe---CCCCceEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                             +.++.|++.||.|||+++   |+||||||+||++   +.++.+||+|||++......
T Consensus        85 e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~  161 (296)
T 3uzp_A           85 ELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             ECCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             EecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence                                   568899999999999999   9999999999999   48899999999999876543


Q ss_pred             CCCC---ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC--ccHHHHHHHhCCCchHH
Q 039228          189 SNPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD--LNLHNFARMAFPNRVMD  263 (356)
Q Consensus       189 ~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~--~~~~~~~~~~~~~~~~~  263 (356)
                      ....   ........||+.|+|||.+.+..++.++|||||||++|+|++|+.||.......  ..+............. 
T Consensus       162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (296)
T 3uzp_A          162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIE-  240 (296)
T ss_dssp             TTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHH-
T ss_pred             ccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchH-
Confidence            3211   112345678999999999999999999999999999999999999997643321  1111111111000000 


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                          .+.                      ..++..+.+++.+||+.||++|||+.+|++.|+.+.....
T Consensus       241 ----~~~----------------------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  283 (296)
T 3uzp_A          241 ----VLC----------------------KGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             ----HHT----------------------TTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             ----HHH----------------------hhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence                000                      1233467899999999999999999999999999987753

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-40  Score=307.80  Aligned_cols=212  Identities=23%  Similarity=0.252  Sum_probs=169.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.+++.++||||+++             
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            578999999999999999999999999999999997432   2234578899999999999999987             


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++.......  
T Consensus        88 ~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~--  162 (336)
T 3h4j_B           88 IEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN--  162 (336)
T ss_dssp             ECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB--
T ss_pred             EECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCchhhEEEcCCCCEEEEEeccceeccCCc--
Confidence                                   458899999999999999   9999999999999999999999999998654322  


Q ss_pred             CccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         ......||+.|+|||++.+..+ +.++|||||||++|+|++|..||........                 ......
T Consensus       163 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-----------------~~~i~~  222 (336)
T 3h4j_B          163 ---FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-----------------FKKVNS  222 (336)
T ss_dssp             ---TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-----------------BCCCCS
T ss_pred             ---ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-----------------HHHHHc
Confidence               2234578999999999988776 6899999999999999999999964322110                 000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ....                .+......+.+|+.+||+.||.+|||+.++++.
T Consensus       223 ~~~~----------------~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          223 CVYV----------------MPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             SCCC----------------CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             CCCC----------------CcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            0000                000123356899999999999999999999864

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.3e-40  Score=296.84  Aligned_cols=220  Identities=20%  Similarity=0.346  Sum_probs=175.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+.. ++.||+|++.... ...+.+.+|+.++++++||||+++                
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   86 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhhceeeheecCCCccEEEEEEecC-CCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence            4679999999999999999999875 5789999997543 334678999999999999999986                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......   
T Consensus        87 ~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~---  160 (269)
T 4hcu_A           87 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ---  160 (269)
T ss_dssp             CTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH---
T ss_pred             CCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCC---eecCCcchheEEEcCCCCEEeccccccccccccc---
Confidence                                  458899999999999999   9999999999999999999999999998653321   


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ........+++.|+|||.+.+..++.++||||||+++|+|++ |..||......  ........            ....
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~~~~~~~~------------~~~~  226 (269)
T 4hcu_A          161 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDIST------------GFRL  226 (269)
T ss_dssp             HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHT------------TCCC
T ss_pred             cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhc------------CccC
Confidence            122334556788999999998899999999999999999999 99999742211  11111100            0000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ...                  ......+.+++.+||+.||++|||+.++++.|+++.++
T Consensus       227 ~~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          227 YKP------------------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             CCC------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCC------------------CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence            000                  02233578999999999999999999999999998764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3.8e-40  Score=309.34  Aligned_cols=232  Identities=20%  Similarity=0.238  Sum_probs=180.6

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEE-----ECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH-
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGV-----FDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF-  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~-----~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l-  134 (356)
                      ....+....++|++.+.||+|+||.||+|.     ...+++.||||++..... ...+.+.+|+.++.++ +||||+++ 
T Consensus        13 ~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~   92 (359)
T 3vhe_A           13 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   92 (359)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence            345566677899999999999999999999     445679999999975433 3346789999999999 78999986 


Q ss_pred             -------------------------H------------------------------------------------------
Q 039228          135 -------------------------I------------------------------------------------------  135 (356)
Q Consensus       135 -------------------------~------------------------------------------------------  135 (356)
                                               +                                                      
T Consensus        93 ~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (359)
T 3vhe_A           93 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKS  172 (359)
T ss_dssp             EEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------------
T ss_pred             eeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccc
Confidence                                     0                                                      


Q ss_pred             ------------------------HHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          136 ------------------------SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       136 ------------------------~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                              .++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++....... 
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~-  248 (359)
T 3vhe_A          173 LSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD-  248 (359)
T ss_dssp             -----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT-
T ss_pred             cchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCC---cccCCCChhhEEEcCCCcEEEEeccceeeeccccc-
Confidence                                    16679999999999999   99999999999999999999999999986543222 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                       ........||+.|+|||++.+..++.++||||||+++|||++ |..||....... .+.........            
T Consensus       249 -~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~~~~~~~~~~------------  314 (359)
T 3vhe_A          249 -YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRRLKEGTR------------  314 (359)
T ss_dssp             -CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-HHHHHHHHTCC------------
T ss_pred             -chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-HHHHHHHcCCC------------
Confidence             223345678899999999999999999999999999999998 999997533221 11111111100            


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ....                  ..+...+.+++..||+.||.+|||+.+|++.|+++.+.
T Consensus       315 ~~~~------------------~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          315 MRAP------------------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             CCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCC------------------CCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence            0000                  02233578999999999999999999999999998764

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.3e-39  Score=306.05  Aligned_cols=173  Identities=25%  Similarity=0.347  Sum_probs=147.7

Q ss_pred             cCChhhHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-----CCChH
Q 039228           58 AIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-----HRNLV  132 (356)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv  132 (356)
                      ....+++.+.....++|.+.+.||+|+||.||+|++..+++.||||++... ......+..|+.+++.+.     ||||+
T Consensus        21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv   99 (360)
T 3llt_A           21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIV   99 (360)
T ss_dssp             GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBC
T ss_pred             cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCee
Confidence            344444555555678999999999999999999999999999999998743 233456778999999987     99999


Q ss_pred             HH--------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC----
Q 039228          133 RF--------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN----  170 (356)
Q Consensus       133 ~l--------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~----  170 (356)
                      ++                                      ..++.||+.||.|||+.+   |+||||||+|||++.    
T Consensus       100 ~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~  176 (360)
T 3llt_A          100 KYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMS---LTHTDLKPENILLDDPYFE  176 (360)
T ss_dssp             CEEEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCTTCC
T ss_pred             cccceeeECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCcccEEEcccccc
Confidence            86                                      458899999999999999   999999999999975    


Q ss_pred             ---------------------CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHH
Q 039228          171 ---------------------DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILL  229 (356)
Q Consensus       171 ---------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l  229 (356)
                                           ++.+||+|||++.....       ......||+.|+|||++.+..++.++|||||||++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  249 (360)
T 3llt_A          177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD-------YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVL  249 (360)
T ss_dssp             EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS-------CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHH
T ss_pred             ccccchhcccccccccccccCCCCEEEEeccCceecCC-------CCcCccCcccccCcHHHcCCCCCCccchHHHHHHH
Confidence                                 78999999999975432       12346789999999999999999999999999999


Q ss_pred             HHHHcCCCCCCc
Q 039228          230 LEMVTRRKPIDF  241 (356)
Q Consensus       230 ~elltg~~Pf~~  241 (356)
                      |+|++|+.||..
T Consensus       250 ~ell~g~~pf~~  261 (360)
T 3llt_A          250 AELYTGSLLFRT  261 (360)
T ss_dssp             HHHHHSSCSCCC
T ss_pred             HHHHHCCCCCCC
Confidence            999999999975

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=5.9e-40  Score=318.48  Aligned_cols=162  Identities=27%  Similarity=0.369  Sum_probs=126.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++...  .....+.+.+|+.+|+.++||||+++              
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            47899999999999999999999999999999998643  23345678999999999999999986              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   ||||||||+|||++.++.+||+|||+++....
T Consensus       132 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  208 (458)
T 3rp9_A          132 LYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAG---ILHRDLKPANCLVNQDCSVKVCDFGLARTVDY  208 (458)
T ss_dssp             EEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTCCEEECCCTTCBCTTS
T ss_pred             EEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCC---cCCCCCChhhEEECCCCCEeecccccchhccC
Confidence                                       458899999999999999   99999999999999999999999999987643


Q ss_pred             CCCCC-----------------------ccCCCCccccccccchhhh-cCCCCCCccchHhHHHHHHHHHcC
Q 039228          188 VSNPT-----------------------QSSSNGVRRTIGYTALDYD-LGSEVSTNGDAYNYGILLLEMVTR  235 (356)
Q Consensus       188 ~~~~~-----------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~sDiwSlG~~l~elltg  235 (356)
                      .....                       .......+||+.|+|||++ .+..++.++|||||||++|||++|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          209 PENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             CTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence            22110                       0123456789999999986 456799999999999999999993

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=1e-39  Score=294.05  Aligned_cols=220  Identities=20%  Similarity=0.334  Sum_probs=173.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+.. +..||+|++..... ..+.+.+|+.++++++||||+++                
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKG-QYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY   84 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETT-TEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhheeeeeeeccCCCceEEEEEecC-ceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence            4679999999999999999998874 57899999975433 34678999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++.......   
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~---  158 (268)
T 3sxs_A           85 ISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ---  158 (268)
T ss_dssp             CTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCSGGGEEECTTCCEEECCTTCEEECCTTC---
T ss_pred             cCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCcCcceEEECCCCCEEEccCccceecchhh---
Confidence                                  568899999999999999   9999999999999999999999999998654322   


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ........+|+.|+|||.+.+..++.++||||||+++|+|++ |..||.......  .......            ....
T Consensus       159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~------------~~~~  224 (268)
T 3sxs_A          159 YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE--VVLKVSQ------------GHRL  224 (268)
T ss_dssp             EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHT------------TCCC
T ss_pred             hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH--HHHHHHc------------CCCC
Confidence            122234556778999999998889999999999999999999 999996432111  1000000            0000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ...                  ...+..+.+++..||+.||.+|||+.+|++.|+.+.+.
T Consensus       225 ~~~------------------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          225 YRP------------------HLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             CCC------------------TTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             CCC------------------CcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            000                  01233578999999999999999999999999988754

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.7e-39  Score=299.07  Aligned_cols=243  Identities=16%  Similarity=0.180  Sum_probs=178.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.++++++||||+++               
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv   87 (319)
T 4euu_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (319)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence            456999999999999999999999999999999997543 2345678899999999999999986               


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe----CCCCceEEccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL----DNDLFAHIGDFELAR  183 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll----~~~~~~kl~Dfg~a~  183 (356)
                                                 +.++.|++.||.|||+.+   |+||||||+|||+    +.++.+||+|||+++
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~  164 (319)
T 4euu_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (319)
T ss_dssp             EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred             EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence                                       458899999999999999   9999999999999    788889999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhc--------CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccH---HHH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDL--------GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNL---HNF  252 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~---~~~  252 (356)
                      ......     ......||..|+|||++.        +..++.++|||||||++|||++|..||..........   ...
T Consensus       165 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~  239 (319)
T 4euu_A          165 ELEDDE-----QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI  239 (319)
T ss_dssp             ECCTTC-----CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHH
T ss_pred             ecCCCC-----ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHH
Confidence            654322     223356899999999986        5788999999999999999999999996533322111   111


Q ss_pred             HHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          253 ARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      .....+.....+ .........    ......  ............+.+++.+||+.||++|||+.|+++......
T Consensus       240 ~~~~p~~~~~~~-~~~~~~~~~----~~~~~~--~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~  308 (319)
T 4euu_A          240 ITGKPSGAISGV-QKAENGPID----WSGDMP--VSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL  308 (319)
T ss_dssp             HHHCCTTCCEEE-ECSTTCCEE----EESSCC--TTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred             hcCCCcccchhh-hcccCCccc----cCccCC--cccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence            111111110000 000000000    000000  001122366678899999999999999999999999886543

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-39  Score=301.19  Aligned_cols=215  Identities=20%  Similarity=0.227  Sum_probs=171.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+.... .....+.+|+.+++.++||||+++                
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            578999999999999999999999999999999987543 334668899999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC--CCceEEcccccccccccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN--DLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                            ..++.|++.||.|||+.+   |+||||||+|||++.  ++.+||+|||++....... 
T Consensus        83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~g---ivH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~-  158 (321)
T 1tki_A           83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD-  158 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-
Confidence                                  568899999999999999   999999999999987  7899999999998654321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||++.+..++.++|||||||++|+|++|..||....... .+.......+....         
T Consensus       159 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~---------  224 (321)
T 1tki_A          159 ----NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ-IIENIMNAEYTFDE---------  224 (321)
T ss_dssp             ----EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCCCCCH---------
T ss_pred             ----ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH-HHHHHHcCCCCCCh---------
Confidence                1233568999999999998889999999999999999999999996422110 01111111000000         


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                         ......+..+.+++.+||..||.+|||+.++++.
T Consensus       225 -------------------~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h  258 (321)
T 1tki_A          225 -------------------EAFKEISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             -------------------HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             -------------------hhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence                               0001233467899999999999999999999873

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.2e-39  Score=300.88  Aligned_cols=233  Identities=23%  Similarity=0.318  Sum_probs=178.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhh--cCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKN--ICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l-------------  134 (356)
                      ..++|.+.+.||+|+||.||+|.+.  ++.||||++...   ....+.+|..++..  ++||||+++             
T Consensus        40 ~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~  114 (342)
T 1b6c_B           40 IARTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ  114 (342)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred             ccccEEEEeeecCCCCcEEEEEEEc--CccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence            3467999999999999999999984  799999998633   34667889988887  789999976             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHh--------hcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 ---------------------------ISIAIDVASALDYLH--------HHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH--------~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                 +.++.+++.||.|||        +.+   |+||||||+||+++.++.+||+||
T Consensus       115 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~---ivH~Dlkp~NIll~~~~~~kL~Df  191 (342)
T 1b6c_B          115 LWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA---IAHRDLKSKNILVKKNGTCCIADL  191 (342)
T ss_dssp             EEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE---EECSCCSGGGEEECTTSCEEECCC
T ss_pred             eEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---eeeCCCCHHHEEECCCCCEEEEEC
Confidence                                       468899999999999        777   999999999999999999999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhcCCC------CCCccchHhHHHHHHHHHcC----------CCCCCccc
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE------VSTNGDAYNYGILLLEMVTR----------RKPIDFMF  243 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~sDiwSlG~~l~elltg----------~~Pf~~~~  243 (356)
                      |++..................||+.|+|||++.+..      ++.++||||||+++|||++|          ..||....
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~  271 (342)
T 1b6c_B          192 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  271 (342)
T ss_dssp             TTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             CCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccC
Confidence            999876543322112334567899999999997652      33689999999999999999          77876544


Q ss_pred             cCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          244 EGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ........+.......        .+......           .+  ....++..+.+|+.+||+.||++|||+.+|++.
T Consensus       272 ~~~~~~~~~~~~~~~~--------~~~~~~~~-----------~~--~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          272 PSDPSVEEMRKVVCEQ--------KLRPNIPN-----------RW--QSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             CSSCCHHHHHHHHTTS--------CCCCCCCG-----------GG--GTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHH--------HhCCCCcc-----------cc--cchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence            4333333332222111        11111000           00  012667789999999999999999999999999


Q ss_pred             HHHhhhhh
Q 039228          324 LQSVNNIL  331 (356)
Q Consensus       324 L~~i~~~~  331 (356)
                      |+.+.++.
T Consensus       331 L~~i~~~~  338 (342)
T 1b6c_B          331 LSQLSQQE  338 (342)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99997653

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=9.8e-40  Score=299.00  Aligned_cols=214  Identities=21%  Similarity=0.229  Sum_probs=164.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--------------------------cchHHHHHHHHHHh
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------------------------GASKSFMAECKALK  124 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~  124 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....                          ...+.+.+|+.+++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999864421                          12356889999999


Q ss_pred             hcCCCChHHH--------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCe
Q 039228          125 NICHRNLVRF--------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNV  166 (356)
Q Consensus       125 ~l~h~niv~l--------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NI  166 (356)
                      +++||||+++                                      ..++.|++.||.|||+.+   |+||||||+||
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Ni  168 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQK---IIHRDIKPSNL  168 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGE
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHE
Confidence            9999999986                                      568899999999999999   99999999999


Q ss_pred             EeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCC---CCCccchHhHHHHHHHHHcCCCCCCccc
Q 039228          167 LLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE---VSTNGDAYNYGILLLEMVTRRKPIDFMF  243 (356)
Q Consensus       167 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDiwSlG~~l~elltg~~Pf~~~~  243 (356)
                      +++.++.+||+|||++.......    .......||+.|+|||.+.+..   ++.++|||||||++|+|++|..||....
T Consensus       169 l~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  244 (298)
T 2zv2_A          169 LVGEDGHIKIADFGVSNEFKGSD----ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER  244 (298)
T ss_dssp             EECTTSCEEECCCTTCEECSSSS----CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             EECCCCCEEEecCCCcccccccc----ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence            99999999999999998654322    1123457899999999997765   3778999999999999999999996421


Q ss_pred             cCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          244 EGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                           ......        .+....+....                  .......+.+++.+||+.||++|||+.+|++
T Consensus       245 -----~~~~~~--------~~~~~~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          245 -----IMCLHS--------KIKSQALEFPD------------------QPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             -----HHHHHH--------HHHHCCCCCCS------------------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             -----HHHHHH--------HHhcccCCCCC------------------ccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence                 111110        00000000000                  0022345789999999999999999999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2.3e-39  Score=313.72  Aligned_cols=216  Identities=23%  Similarity=0.362  Sum_probs=174.5

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ...++|++.+.||+|+||.||+|.+.  ++.||||+++...  ..+.+.+|+.+|++++||||+++              
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv  265 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV  265 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence            45578999999999999999999986  6899999997543  45789999999999999999986              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.....
T Consensus       266 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  342 (450)
T 1k9a_A          266 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASST  342 (450)
T ss_dssp             EECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEECCCCCEEEeeCCCccccccc
Confidence                                      458899999999999999   999999999999999999999999999754221


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                             .....++..|+|||.+.+..++.++|||||||++|||++ |..||.......  ....+....          
T Consensus       343 -------~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~----------  403 (450)
T 1k9a_A          343 -------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGY----------  403 (450)
T ss_dssp             -----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTTC----------
T ss_pred             -------ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC----------
Confidence                   112355788999999999999999999999999999998 999997543221  111111110          


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                        ....                  +..++..+.+|+.+||+.||++|||+.+|++.|+.+...
T Consensus       404 --~~~~------------------p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          404 --KMDA------------------PDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             --CCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             --CCCC------------------CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence              0000                  113455788999999999999999999999999998754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.8e-39  Score=298.58  Aligned_cols=214  Identities=17%  Similarity=0.189  Sum_probs=169.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc------chHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG------ASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      +.|.+.+.||+|+||.||+|.+..+++.||+|++......      ..+.+.+|+.+++.++||||+++           
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            4599999999999999999999999999999999754321      35678999999999999999987           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC----ceEEcccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL----FAHIGDFELARF  184 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~----~~kl~Dfg~a~~  184 (356)
                                                ..++.||+.||.|||+.+   |+||||||+||+++.++    .+||+|||+++.
T Consensus        91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~  167 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  167 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCC---eEcCCCCHHHEEEecCCCCCCCEEEEECCCCeE
Confidence                                      568899999999999999   99999999999999877    899999999986


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      .....     ......||+.|+|||++.+..++.++|||||||++|+|++|..||....... .+...........    
T Consensus       168 ~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~~~~~~~~~~----  237 (326)
T 2y0a_A          168 IDFGN-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANVSAVNYEFE----  237 (326)
T ss_dssp             CCTTS-----CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHHTCCCCC----
T ss_pred             CCCCC-----ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHHhcCCCcC----
Confidence            64322     2234568999999999999999999999999999999999999996422110 0111100000000    


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       .                       .........+.+++.+||..||++|||+.++++
T Consensus       238 -~-----------------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          238 -D-----------------------EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             -H-----------------------HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             -c-----------------------cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence             0                       000122345789999999999999999999987

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=2e-39  Score=300.50  Aligned_cols=215  Identities=22%  Similarity=0.293  Sum_probs=166.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+.+|+.++++++||||+++               
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            4569999999999999999999999999999999975433 345779999999999999999852               


Q ss_pred             --------------------------------------------------------------------------------
Q 039228          135 --------------------------------------------------------------------------------  134 (356)
Q Consensus       135 --------------------------------------------------------------------------------  134 (356)
                                                                                                      
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                                                            


Q ss_pred             --HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC--------ccCCCCcccccc
Q 039228          135 --ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT--------QSSSNGVRRTIG  204 (356)
Q Consensus       135 --~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~--------~~~~~~~~gt~~  204 (356)
                        +.++.||+.||.|||+.+   |+||||||+||+++.++.+||+|||+++.........        ........||+.
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHHHHHHHhCC---eeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence              357889999999999999   9999999999999999999999999998765432111        122344678999


Q ss_pred             ccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchh
Q 039228          205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNML  284 (356)
Q Consensus       205 y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  284 (356)
                      |+|||++.+..++.++|||||||++|+|++|..|+...       ......        ....    ..           
T Consensus       242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~~--------~~~~----~~-----------  291 (332)
T 3qd2_B          242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIITD--------VRNL----KF-----------  291 (332)
T ss_dssp             GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHHH--------HHTT----CC-----------
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHHH--------hhcc----CC-----------
Confidence            99999999999999999999999999999987774310       000000        0000    00           


Q ss_pred             hhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          285 RKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       285 ~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          +.........+.+++.+||+.||.+|||+.++++
T Consensus       292 ----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          292 ----PLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             ----CHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred             ----CcccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence                0011233445688999999999999999999986

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=5.4e-40  Score=302.73  Aligned_cols=228  Identities=21%  Similarity=0.266  Sum_probs=167.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....   .....+.+|+.++++++||||+++             
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            5689999999999999999999999999999999975432   234578899999999999999986             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++....
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~  167 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIA  167 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEETTSCEEECCCSCC----
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcCCCCHHHEEEcCCCCEEEeeccCccccc
Confidence                                        458899999999999999   9999999999999999999999999998654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ..... ........||+.|+|||++.+..++.++||||||+++|+|++|+.||......... ....... .... ... 
T Consensus       168 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~-~~~~~~~-~~~~-~~~-  242 (311)
T 3ork_A          168 DSGNS-VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA-YQHVRED-PIPP-SAR-  242 (311)
T ss_dssp             ---------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHCC-CCCH-HHH-
T ss_pred             ccccc-cccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHhcCC-CCCc-ccc-
Confidence            43221 12233467899999999999999999999999999999999999999643211100 0000000 0000 000 


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh-HHHHHHHHHhhhhh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV-PNAVHDLQSVNNIL  331 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~-~~vl~~L~~i~~~~  331 (356)
                                               ....+..+.+++.+||+.||++||++ +++.+.|..+....
T Consensus       243 -------------------------~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~~  283 (311)
T 3ork_A          243 -------------------------HEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGE  283 (311)
T ss_dssp             -------------------------STTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTTC
T ss_pred             -------------------------cCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcCC
Confidence                                     00233467899999999999999964 45556676665544

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=7e-40  Score=297.46  Aligned_cols=223  Identities=20%  Similarity=0.286  Sum_probs=165.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+   +..||+|.+.... ....+.+.+|+.++++++||||+++           
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~l   92 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI   92 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEE
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEE
Confidence            346799999999999999999998653   4679999987543 2345678899999999999999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++.....
T Consensus        93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  169 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS  169 (281)
T ss_dssp             EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC----------
T ss_pred             EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecccccHHHEEECCCCCEEECccccccccCcc
Confidence                                      457889999999999999   999999999999999999999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..   .......+++.|+|||.+.+..++.++||||||+++|||++ |..||......  ..........          
T Consensus       170 ~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~~i~~~~----------  234 (281)
T 1mp8_A          170 TY---YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGE----------  234 (281)
T ss_dssp             ------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTC----------
T ss_pred             cc---cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHHHHHcCC----------
Confidence            21   12223456788999999998899999999999999999997 99999753322  1111111100          


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                       .. ..                  ...++..+.+++.+||+.||++|||+.+|++.|+.+.+.
T Consensus       235 -~~-~~------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  277 (281)
T 1mp8_A          235 -RL-PM------------------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  277 (281)
T ss_dssp             -CC-CC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -CC-CC------------------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence             00 00                  013344678999999999999999999999999998764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=3.6e-40  Score=322.96  Aligned_cols=224  Identities=21%  Similarity=0.336  Sum_probs=180.3

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ....++|++.+.||+|+||.||+|.+..++..||||+++... ...+.+.+|+.+|++++||||+++             
T Consensus       216 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv  294 (495)
T 1opk_A          216 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII  294 (495)
T ss_dssp             BCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred             ccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEE
Confidence            334567999999999999999999999888999999997543 346789999999999999999987             


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.....
T Consensus       295 ~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  371 (495)
T 1opk_A          295 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTGD  371 (495)
T ss_dssp             EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCEEECCTTCEECCTTC
T ss_pred             EEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCChhhEEECCCCcEEEeecccceeccCC
Confidence                                      457889999999999999   999999999999999999999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .   ........++..|+|||++.+..++.++|||||||++|||++ |..||......  ....            .+..
T Consensus       372 ~---~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~------------~~~~  434 (495)
T 1opk_A          372 T---YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYE------------LLEK  434 (495)
T ss_dssp             C---EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHH------------HHHT
T ss_pred             c---eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHH------------HHHc
Confidence            1   122334456788999999998899999999999999999999 99999753221  1111            1111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ......                  +..++..+.+|+.+||+.||++|||+.+|++.|+.+...
T Consensus       435 ~~~~~~------------------~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~  479 (495)
T 1opk_A          435 DYRMER------------------PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  479 (495)
T ss_dssp             TCCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred             CCCCCC------------------CCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence            111110                  113445688999999999999999999999999988644

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=7.9e-40  Score=301.03  Aligned_cols=239  Identities=24%  Similarity=0.252  Sum_probs=168.8

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-----ccchHHHHHHHHHHhhcC---CCChHHH-------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----QGASKSFMAECKALKNIC---HRNLVRF-------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~niv~l-------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||||++....     ......+.+|+.+++.++   ||||+++       
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            3678999999999999999999999999999999987432     122346677887777665   9999976       


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcc
Q 039228          135 ------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGD  178 (356)
Q Consensus       135 ------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~D  178 (356)
                                                          ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~D  163 (308)
T 3g33_A           87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLAD  163 (308)
T ss_dssp             CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCTTTEEECTTSCEEECS
T ss_pred             CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCEEEee
Confidence                                                458899999999999999   99999999999999999999999


Q ss_pred             cccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC
Q 039228          179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       179 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      ||+++.....     .......||+.|+|||++.+..++.++|||||||++|+|++|+.||....... .+.........
T Consensus       164 fg~a~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~  237 (308)
T 3g33_A          164 FGLARIYSYQ-----MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGL  237 (308)
T ss_dssp             CSCTTTSTTC-----CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH-HHHHHHHHHCC
T ss_pred             CccccccCCC-----cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCC
Confidence            9999765422     22234678999999999999999999999999999999999999997532211 11111111110


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .....+........     .....................+.+++.+||+.||++|||+.++++
T Consensus       238 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          238 PPEDDWPRDVSLPR-----GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             CCTTTSCSSCSSCG-----GGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CChhhccchhhccc-----cccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            00000000000000     000000000000001123446789999999999999999999885

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.4e-39  Score=296.11  Aligned_cols=227  Identities=21%  Similarity=0.320  Sum_probs=173.9

Q ss_pred             CCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .+|++.+.||+|+||.||+|.+..+   ...||+|.+.... ....+.+.+|+.++++++||||+++             
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            4689999999999999999997543   3468999987533 3345678999999999999999987             


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++.....
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  181 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  181 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred             EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEECCCCCEEECccccccccccc
Confidence                                      458889999999999999   999999999999999999999999999866443


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ............+|+.|+|||.+.+..++.++||||||+++|+|++ |.+||......  ...........         
T Consensus       182 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~--~~~~~~~~~~~---------  250 (298)
T 3f66_A          182 EYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLLQGRR---------  250 (298)
T ss_dssp             GGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT--THHHHHHTTCC---------
T ss_pred             chhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH--HHHHHHhcCCC---------
Confidence            3222333445667889999999999999999999999999999999 56666533221  11111111000         


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                        ... .                  ..++..+.+++.+||+.||++|||+.+|++.|+++...+..
T Consensus       251 --~~~-~------------------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~  295 (298)
T 3f66_A          251 --LLQ-P------------------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG  295 (298)
T ss_dssp             --CCC-C------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred             --CCC-C------------------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence              000 0                  02234578999999999999999999999999999887754

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=4.4e-40  Score=299.42  Aligned_cols=225  Identities=21%  Similarity=0.336  Sum_probs=181.7

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..++..||+|++... ....+.+.+|+.+++.++||||+++              
T Consensus        10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   88 (288)
T 3kfa_A           10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   88 (288)
T ss_dssp             CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence            3466799999999999999999999999999999999754 3345778999999999999999986              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.+++.||.|||+.+   |+||||||+||+++.++.++|+|||++.......
T Consensus        89 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~  165 (288)
T 3kfa_A           89 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT  165 (288)
T ss_dssp             ECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHT---CCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred             EcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCC---ccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence                                     457889999999999999   9999999999999999999999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                         ........+++.|+|||.+.+..++.++||||||+++|+|++ |..||......  .....            +...
T Consensus       166 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~~------------~~~~  228 (288)
T 3kfa_A          166 ---YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYEL------------LEKD  228 (288)
T ss_dssp             ---SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHH------------HHTT
T ss_pred             ---cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHH------------Hhcc
Confidence               222334566888999999998899999999999999999999 99999743221  11111            1111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      ......                  ..++..+.+++..||+.||.+|||+.+|++.|+.+.....
T Consensus       229 ~~~~~~------------------~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~~  274 (288)
T 3kfa_A          229 YRMERP------------------EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS  274 (288)
T ss_dssp             CCCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC------------------CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhcc
Confidence            111100                  1334467899999999999999999999999999887653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.3e-39  Score=296.80  Aligned_cols=239  Identities=21%  Similarity=0.224  Sum_probs=165.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|+||.||+|.+ .+++.||+|++.....  .....+.+|+.+++.++||||+++               
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE   80 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence            5799999999999999999998 5679999999865432  234678899999999999999986               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......   
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---  154 (288)
T 1ob3_A           81 HLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPV---  154 (288)
T ss_dssp             CCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             ecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEeECccccccCccc---
Confidence                                  458899999999999999   9999999999999999999999999998654221   


Q ss_pred             ccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......+|+.|+|||++.+. .++.++|||||||++|+|++|..||....... .+..............+-......
T Consensus       155 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  232 (288)
T 1ob3_A          155 -RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELP  232 (288)
T ss_dssp             --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGST
T ss_pred             -cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHHCCCChhhchhhhccc
Confidence             122335679999999999764 58999999999999999999999997532211 111211111110000000000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....   .........+..........+.+++.+||+.||++|||+.++++
T Consensus       233 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          233 KYDP---NFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             TCCT---TCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccc---ccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            0000   00000000000000123346789999999999999999999875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.9e-39  Score=302.10  Aligned_cols=236  Identities=19%  Similarity=0.324  Sum_probs=172.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCC----CeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+    +..||||++..... .....+.+|+.+++.++||||+++           
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence            45788899999999999999998654    34699999975432 334578899999999999999986           


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.....
T Consensus       123 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~  199 (333)
T 1mqb_A          123 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLED  199 (333)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence                                       558899999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      .... ........+|..|+|||.+.+..++.++||||||+++|||++ |..||......  .......            
T Consensus       200 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~~~~~~------------  264 (333)
T 1mqb_A          200 DPEA-TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EVMKAIN------------  264 (333)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHH------------
T ss_pred             cccc-ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHH------------
Confidence            3211 112223445788999999999999999999999999999999 99999643211  1111110            


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccccCCc
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTN  342 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~~~~~  342 (356)
                      .......                  ...++..+.+++.+||+.||++||++.+|++.|+.+.........+.....
T Consensus       265 ~~~~~~~------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~~~~~~~~~p  322 (333)
T 1mqb_A          265 DGFRLPT------------------PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLKTLADFDP  322 (333)
T ss_dssp             TTCCCCC------------------CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGGGSBCCC--
T ss_pred             CCCcCCC------------------cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchhhhhhcCCCc
Confidence            0000000                  012344678999999999999999999999999999876654444443333

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=7.6e-40  Score=297.26  Aligned_cols=222  Identities=20%  Similarity=0.338  Sum_probs=172.7

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ...++|++.+.||+|+||.||+|.+. ++..||+|++..... ..+.+.+|+.+++.++||||+++              
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   98 (283)
T 3gen_A           21 IDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIIT   98 (283)
T ss_dssp             CCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             CCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEE
Confidence            34567999999999999999999887 458899999975432 34678999999999999999986              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++....... 
T Consensus        99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-  174 (283)
T 3gen_A           99 EYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-  174 (283)
T ss_dssp             CCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-
T ss_pred             eccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCccceEEEcCCCCEEEccccccccccccc-
Confidence                                    568899999999999999   9999999999999999999999999998653321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                        ........+|+.|+|||.+.+..++.++||||||+++|+|++ |+.||......  .....            +....
T Consensus       175 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~~~~------------~~~~~  238 (283)
T 3gen_A          175 --YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEH------------IAQGL  238 (283)
T ss_dssp             --HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHH------------HHTTC
T ss_pred             --cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HHHHH------------Hhccc
Confidence              122333456788999999998889999999999999999998 99999743211  11111            11110


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .....                  ......+.+++.+||+.||.+|||+.+|++.|..+.+.
T Consensus       239 ~~~~~------------------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          239 RLYRP------------------HLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             CCCCC------------------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCC------------------CcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence            00000                  01233578999999999999999999999999988653

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=2.8e-40  Score=305.62  Aligned_cols=246  Identities=20%  Similarity=0.309  Sum_probs=183.7

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----  134 (356)
                      ++....++|++.+.||+|+||.||+|.+.     .+++.||+|.+..... .....+.+|+.+++.++||||+++     
T Consensus        19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~   98 (322)
T 1p4o_A           19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS   98 (322)
T ss_dssp             TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred             hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence            34455678999999999999999999876     3568899999975432 334568899999999999999986     


Q ss_pred             ------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC
Q 039228          135 ------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL  172 (356)
Q Consensus       135 ------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~  172 (356)
                                                                +.++.|++.||.|||+++   |+||||||+||+++.++
T Consensus        99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~NIli~~~~  175 (322)
T 1p4o_A           99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDF  175 (322)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTC
T ss_pred             cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCC---CccCCCccceEEEcCCC
Confidence                                                      237789999999999999   99999999999999999


Q ss_pred             ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHH
Q 039228          173 FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       173 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~  251 (356)
                      .+||+|||++........  ........+|+.|+|||++.+..++.++||||||+++|+|++ |..||.....     ..
T Consensus       176 ~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~  248 (322)
T 1p4o_A          176 TVKIGDFGMTRDIYETDY--YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN-----EQ  248 (322)
T ss_dssp             CEEECCTTCCCGGGGGGC--EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH-----HH
T ss_pred             eEEECcCccccccccccc--cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH-----HH
Confidence            999999999986543221  122233566889999999998899999999999999999999 8999864321     11


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ....        +........                   ...++..+.+++.+||+.||.+|||+.++++.|+.+.+..
T Consensus       249 ~~~~--------~~~~~~~~~-------------------~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~  301 (322)
T 1p4o_A          249 VLRF--------VMEGGLLDK-------------------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG  301 (322)
T ss_dssp             HHHH--------HHTTCCCCC-------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTT
T ss_pred             HHHH--------HHcCCcCCC-------------------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccC
Confidence            1110        000000000                   0133446789999999999999999999999999887655


Q ss_pred             ccccccccCCcCCcccc
Q 039228          332 LPETVFKSLTNNRAPKL  348 (356)
Q Consensus       332 ~~~~~~~~~~~~~~~~~  348 (356)
                      .....+....+...|..
T Consensus       302 ~~~~~~~~~~~~~~~~~  318 (322)
T 1p4o_A          302 FREVSFYYSEENKLPEP  318 (322)
T ss_dssp             HHHHCSTTSTTC-----
T ss_pred             CcccccccccccCCCCh
Confidence            44444444444444443

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=306.29  Aligned_cols=214  Identities=21%  Similarity=0.285  Sum_probs=168.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.+|+.++||||+++             
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv   93 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV   93 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            467999999999999999999999999999999997432   2345678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+.+   |+||||||+|||++.+|.+||+|||+++.....  
T Consensus        94 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~--  168 (384)
T 4fr4_A           94 VDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQR---IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE--  168 (384)
T ss_dssp             ECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECCTT--
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCcHHHeEECCCCCEEEeccceeeeccCC--
Confidence                                    458889999999999999   999999999999999999999999999865432  


Q ss_pred             CCccCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                         .......||+.|+|||++.+   ..++.++|||||||++|+|++|..||.......  .......         +..
T Consensus       169 ---~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~~~~---------~~~  234 (384)
T 4fr4_A          169 ---TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS--SKEIVHT---------FET  234 (384)
T ss_dssp             ---CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC--HHHHHHH---------HHH
T ss_pred             ---CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc--HHHHHHH---------Hhh
Confidence               22344678999999999864   458999999999999999999999997432221  1111110         000


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-hHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-VPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-~~~vl~  322 (356)
                      ..... +                  ......+.+|+.+||+.||.+||+ +.+|++
T Consensus       235 ~~~~~-p------------------~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          235 TVVTY-P------------------SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             CCCCC-C------------------TTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             cccCC-C------------------CcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            00000 0                  022345789999999999999998 666543

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=3.4e-39  Score=303.98  Aligned_cols=240  Identities=23%  Similarity=0.203  Sum_probs=174.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.++++++||||+++               
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            468999999999999999999999999999999997433 2334678899999999999999875               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......
T Consensus       106 ~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~  182 (364)
T 3qyz_A          106 YIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH  182 (364)
T ss_dssp             EEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCGGG
T ss_pred             EEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCChHhEEECCCCCEEEEeCcceEecCCCC
Confidence                                     458899999999999999   9999999999999999999999999998665432


Q ss_pred             CCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh---
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV---  265 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~---  265 (356)
                      .. ........||+.|+|||++.+ ..++.++|||||||++|+|++|+.||....... .+..............+.   
T Consensus       183 ~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~  260 (364)
T 3qyz_A          183 DH-TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGSPSQEDLNCII  260 (364)
T ss_dssp             CB-CCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCSCCHHHHHTCC
T ss_pred             Cc-cccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCCCCHHHHHHhh
Confidence            21 122344678999999998765 458999999999999999999999997543221 222222211111111000   


Q ss_pred             h---hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          266 N---LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       266 ~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +   .........   ...    ..+..........+.+|+.+||+.||.+|||+.++++
T Consensus       261 ~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          261 NLKARNYLLSLPH---KNK----VPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             CHHHHHHHHTSCC---CCC----CCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhhHHHHHHhcCC---ccC----CCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            0   000000000   000    0000000123346789999999999999999999986

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=2.4e-39  Score=298.03  Aligned_cols=224  Identities=21%  Similarity=0.310  Sum_probs=176.4

Q ss_pred             hcCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      ..++|.+.+.||+|+||.||+|.+.     .++..||+|++.... ....+.+.+|+.+++.++||||+++         
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            3567999999999999999999983     456899999997543 3345678899999999999999976         


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCC
Q 039228          135 ----------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPK  162 (356)
Q Consensus       135 ----------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlk  162 (356)
                                                                          +.++.|++.||.|||+++   |+|||||
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dik  177 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMK---LVHRDLA  177 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTT---EECCCCS
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCC---Ccccccc
Confidence                                                                136789999999999999   9999999


Q ss_pred             CCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCc
Q 039228          163 PSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDF  241 (356)
Q Consensus       163 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~  241 (356)
                      |+||+++.++.+||+|||++........  ........+++.|+|||.+.+..++.++||||||+++|+|++ |..||..
T Consensus       178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~  255 (314)
T 2ivs_A          178 ARNILVAEGRKMKISDFGLSRDVYEEDS--YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPG  255 (314)
T ss_dssp             GGGEEEETTTEEEECCCTTCEECTTTSC--EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             hheEEEcCCCCEEEcccccccccccccc--ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999999986543322  122334556788999999998889999999999999999999 9999974


Q ss_pred             cccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHH
Q 039228          242 MFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAV  321 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl  321 (356)
                      ....  .+.......            .....                  ...++..+.+++.+||+.||++|||+.+|+
T Consensus       256 ~~~~--~~~~~~~~~------------~~~~~------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~l~  303 (314)
T 2ivs_A          256 IPPE--RLFNLLKTG------------HRMER------------------PDNCSEEMYRLMLQCWKQEPDKRPVFADIS  303 (314)
T ss_dssp             CCGG--GHHHHHHTT------------CCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCHH--HHHHHhhcC------------CcCCC------------------CccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence            3221  111111111            00000                  012344678999999999999999999999


Q ss_pred             HHHHHhhhh
Q 039228          322 HDLQSVNNI  330 (356)
Q Consensus       322 ~~L~~i~~~  330 (356)
                      +.|+++...
T Consensus       304 ~~l~~~~~~  312 (314)
T 2ivs_A          304 KDLEKMMVK  312 (314)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999998654

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=3.7e-39  Score=302.04  Aligned_cols=246  Identities=21%  Similarity=0.271  Sum_probs=175.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....  .....+.+|+.+++.++||||+++              
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            4679999999999999999999999999999999864432  234578899999999999999865              


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++
T Consensus        96 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~  172 (351)
T 3mi9_A           96 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLAR  172 (351)
T ss_dssp             -CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence                                           458899999999999999   9999999999999999999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh--CCCc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA--FPNR  260 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~--~~~~  260 (356)
                      .................||+.|+|||++.+ ..++.++|||||||++|+|++|..||....... .+.......  .+..
T Consensus       173 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~  251 (351)
T 3mi9_A          173 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALISQLCGSITPE  251 (351)
T ss_dssp             ECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTT
T ss_pred             cccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChh
Confidence            765443333344455678999999999876 457999999999999999999999997532211 111111111  1111


Q ss_pred             hHHHhh-hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          261 VMDIVN-LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       261 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .....+ .....................   ........+.+|+.+||+.||++|||+.|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          252 VWPNVDNYELYEKLELVKGQKRKVKDRL---KAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             TSTTGGGCGGGTSSCCCSSCCCCHHHHH---HHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hccccccchhhcccccccccccCHHHHh---hhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence            110000 000000000000000000000   000112357899999999999999999999873

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.3e-39  Score=296.22  Aligned_cols=240  Identities=20%  Similarity=0.230  Sum_probs=166.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.....  ...+.+.+|+.++++++||||+++              
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF   81 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence            3679999999999999999999999999999999865432  234568899999999999999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......  
T Consensus        82 e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--  156 (311)
T 4agu_A           82 EYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFARLLTGPS--  156 (311)
T ss_dssp             ECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc--
Confidence                                   458889999999999999   9999999999999999999999999998654322  


Q ss_pred             CccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCchHHHhhhh
Q 039228          192 TQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNRVMDIVNLV  268 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  268 (356)
                        .......||..|+|||++.+ ..++.++||||||+++|+|++|..||......+ ..........  ...........
T Consensus       157 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  233 (311)
T 4agu_A          157 --DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD-QLYLIRKTLGDLIPRHQQVFSTN  233 (311)
T ss_dssp             -----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHHHHTC
T ss_pred             --cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhcccccccccccccc
Confidence              12234568999999999876 668999999999999999999999997533221 1111111111  11111111100


Q ss_pred             -hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 -LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       ..............-...    ........+.+++.+||+.||.+|||+.++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          234 QYFSGVKIPDPEDMEPLEL----KFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             GGGTTCCCCCCSSCCCHHH----HCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cccccCcCCCccccchhhh----hcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence             000000000000000000    00123446789999999999999999999986

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=4e-39  Score=311.06  Aligned_cols=215  Identities=18%  Similarity=0.169  Sum_probs=168.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.....  ...+.+.+|+.+++.++||||+++              
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            4569999999999999999999999999999999975432  234578899999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC---CCCceEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD---NDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~---~~~~~kl~Dfg~a~~~~~~  188 (356)
                                             ..++.||+.||.|||+.+   |+||||||+|||++   .++.+||+|||++......
T Consensus        90 E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~g---ivHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~  166 (444)
T 3soa_A           90 DLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE  166 (444)
T ss_dssp             CCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTT
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEeccCCCCcEEEccCceeEEecCC
Confidence                                   458899999999999999   99999999999998   5688999999999765432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH-hCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM-AFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  267 (356)
                      .    .......||+.|+|||++.+..++.++|||||||++|+|++|.+||.....  ..+...... .+...     .+
T Consensus       167 ~----~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~~~~~~-----~~  235 (444)
T 3soa_A          167 Q----QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HRLYQQIKAGAYDFP-----SP  235 (444)
T ss_dssp             C----CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTCCCCC-----TT
T ss_pred             C----ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHhCCCCCC-----cc
Confidence            2    222346789999999999999999999999999999999999999964211  111111111 00000     00


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                         .+    ......+.+|+.+||+.||.+|||+.++++
T Consensus       236 -------------------~~----~~~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          236 -------------------EW----DTVTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             -------------------TT----TTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             -------------------cc----ccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                               00    022345789999999999999999999987

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.2e-39  Score=305.20  Aligned_cols=216  Identities=18%  Similarity=0.205  Sum_probs=169.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....  ....+.+.+|+.+++.++||||+++              
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            356999999999999999999999999999999997543  2334678899999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC---CceEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND---LFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~~~~  188 (356)
                                             ..++.||+.||.|||+.+   |+||||||+|||++.+   +.+||+|||++......
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~  184 (362)
T 2bdw_A          108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS  184 (362)
T ss_dssp             CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEeecCcceEecCC
Confidence                                   468899999999999999   9999999999999864   45999999999765432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .     ......||+.|+|||++.+..++.++|||||||++|+|++|..||.....  ..+........           
T Consensus       185 ~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~~~~-----------  246 (362)
T 2bdw_A          185 E-----AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIKAGA-----------  246 (362)
T ss_dssp             C-----SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC-----------
T ss_pred             c-----ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCC-----------
Confidence            1     22346789999999999999999999999999999999999999964211  11111111100           


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .....            ..    .......+.+++.+||+.||++|||+.++++.
T Consensus       247 ~~~~~------------~~----~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          247 YDYPS------------PE----WDTVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             CCCCT------------TG----GGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             CCCCc------------cc----ccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            00000            00    00223457899999999999999999998753

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=303.46  Aligned_cols=234  Identities=18%  Similarity=0.182  Sum_probs=170.4

Q ss_pred             cCCCCccccceecCceEEEEEEECC---CCeEEEEEEeeccCcc-----------chHHHHHHHHHHhhcCCCChHHH--
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQCQG-----------ASKSFMAECKALKNICHRNLVRF--  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~l--  134 (356)
                      .++|.+.+.||+|+||.||+|.+..   ++..||+|++......           ....+.+|+..++.++||||+++  
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            4679999999999999999999987   7889999998754321           12346678889999999999875  


Q ss_pred             --------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC--ce
Q 039228          135 --------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL--FA  174 (356)
Q Consensus       135 --------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~--~~  174 (356)
                                                            +.++.||+.||.|||+.+   |+||||||+|||++.++  .+
T Consensus       116 ~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~  192 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNPDQV  192 (345)
T ss_dssp             EEEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEESSSTTSE
T ss_pred             ccccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCcCHHHEEEccCCCCcE
Confidence                                                  568999999999999999   99999999999998777  99


Q ss_pred             EEcccccccccccCCCC---CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHH
Q 039228          175 HIGDFELARFRQEVSNP---TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~  251 (356)
                      ||+|||+++........   .........||..|+|||++.+..++.++|||||||++|||++|+.||............
T Consensus       193 kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~  272 (345)
T 2v62_A          193 YLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQT  272 (345)
T ss_dssp             EECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHH
T ss_pred             EEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHH
Confidence            99999999876433221   111224467899999999999999999999999999999999999999643222211111


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      ...... ..+...+......                     ..++..+.+++..||+.||++|||+.+|++.|+.+.-
T Consensus       273 ~~~~~~-~~~~~~~~~~~~~---------------------~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          273 AKTNLL-DELPQSVLKWAPS---------------------GSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             HHHHHH-HTTTHHHHHHSCT---------------------TSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             HHHhhc-ccccHHHHhhccc---------------------cccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            111110 0001111110000                     0233467899999999999999999999999987654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.3e-39  Score=305.55  Aligned_cols=214  Identities=19%  Similarity=0.211  Sum_probs=168.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-----ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      +.|++.+.||+|+||.||+|.+..+++.||||++....     ....+.+.+|+.+++.++||||+++            
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            46999999999999999999999999999999986431     1235678999999999999999987            


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc---eEEcccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF---AHIGDFELA  182 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~---~kl~Dfg~a  182 (356)
                                                   ..++.||+.||.|||+++   |+||||||+|||++.++.   +||+|||++
T Consensus       104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a  180 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGVA  180 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred             EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChHHeEEecCCCCCcEEEecCcce
Confidence                                         347889999999999999   999999999999986554   999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      .......    .......||+.|+|||++.+..++.++|||||||++|+|++|..||.....  ..+.......+.... 
T Consensus       181 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~i~~~~~~~~~-  253 (351)
T 3c0i_A          181 IQLGESG----LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE--RLFEGIIKGKYKMNP-  253 (351)
T ss_dssp             EECCTTS----CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH--HHHHHHHHTCCCCCH-
T ss_pred             eEecCCC----eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH--HHHHHHHcCCCCCCc-
Confidence            8664322    123346789999999999999999999999999999999999999974211  001111110000000 


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                                 .........+.+|+.+||+.||++|||+.++++
T Consensus       254 ---------------------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          254 ---------------------------RQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             ---------------------------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ---------------------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                                       000122346789999999999999999999986

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.5e-39  Score=299.28  Aligned_cols=241  Identities=19%  Similarity=0.230  Sum_probs=173.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++...   ..+.+.+|+.++++++ ||||+++               
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            36799999999999999999999999999999998733   3567889999999997 9999976               


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEcccccccccccCCCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                           ..++.|++.||.|||+.+   |+||||||+|||++.++ .+||+|||+++......   
T Consensus       112 ~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~---  185 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ---  185 (330)
T ss_dssp             EECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC---
T ss_pred             EeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC---
Confidence                                 458899999999999999   99999999999999766 89999999998654322   


Q ss_pred             ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                        ......++..|+|||++.+ ..++.++|||||||++|+|++|..||.........+.......-.....+.++.....
T Consensus       186 --~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  263 (330)
T 3nsz_A          186 --EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIE  263 (330)
T ss_dssp             --CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCC
T ss_pred             --ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccc
Confidence              2233567899999999877 6789999999999999999999999954332222222222222222222222111000


Q ss_pred             cccc-----ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKV-----LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....     .......+...............+.+|+.+||+.||.+|||+.++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          264 LDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             CCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            0000     00000000000000011123456789999999999999999999986

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.5e-39  Score=295.13  Aligned_cols=223  Identities=20%  Similarity=0.345  Sum_probs=173.0

Q ss_pred             hcCCCCccccceecCceEEEEEEECC---CCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ..++|.+.+.||+|+||.||+|.+..   ++..||+|.+.... ....+.+.+|+.+++.++||||+++           
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   89 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWI   89 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEE
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEE
Confidence            35679999999999999999999753   34579999987543 3345678999999999999999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++......
T Consensus        90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  166 (281)
T 3cc6_A           90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASPECVKLGDFGLSRYIEDE  166 (281)
T ss_dssp             EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred             EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence                                      457889999999999999   999999999999999999999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..   .......+++.|+|||.+.+..++.++||||||+++|+|++ |+.||......  ...........         
T Consensus       167 ~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~~~~~~~~---------  232 (281)
T 3cc6_A          167 DY---YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIGVLEKGDR---------  232 (281)
T ss_dssp             ---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHHHHHHTCC---------
T ss_pred             cc---cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHHHHhcCCC---------
Confidence            21   12233456788999999998899999999999999999998 99999643221  11111111100         


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                         ....                  ..++..+.+++.+||+.||++|||+.+|++.|+.+.+.
T Consensus       233 ---~~~~------------------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~  274 (281)
T 3cc6_A          233 ---LPKP------------------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM  274 (281)
T ss_dssp             ---CCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ---CCCC------------------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence               0000                  02334578999999999999999999999999998754

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=6e-40  Score=302.75  Aligned_cols=229  Identities=17%  Similarity=0.173  Sum_probs=176.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++........+.+.+|+.+++.++||||+++                
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            4579999999999999999999999999999999976666666789999999999999999976                


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                   +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++...
T Consensus       108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~  184 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKG---YAHRDLKPTNILLGDEGQPVLMDLGSMNQA  184 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred             EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence                                         458899999999999999   999999999999999999999999998754


Q ss_pred             ccCCCCC-----ccCCCCccccccccchhhhcCCC---CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC
Q 039228          186 QEVSNPT-----QSSSNGVRRTIGYTALDYDLGSE---VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF  257 (356)
Q Consensus       186 ~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~---~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~  257 (356)
                      .......     ........||+.|+|||.+.+..   ++.++||||||+++|+|++|..||................  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~--  262 (317)
T 2buj_A          185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQN--  262 (317)
T ss_dssp             CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHC--
T ss_pred             ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhc--
Confidence            3211100     00112245689999999987654   6889999999999999999999996433222222211111  


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                                ......                  .......+.+++.+||+.||.+|||+.+|++.|+.+....+
T Consensus       263 ----------~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~  309 (317)
T 2buj_A          263 ----------QLSIPQ------------------SPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP  309 (317)
T ss_dssp             ----------C--CCC------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred             ----------cCCCCc------------------cccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence                      000000                  01223467899999999999999999999999998865443

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.7e-39  Score=297.57  Aligned_cols=226  Identities=21%  Similarity=0.261  Sum_probs=178.4

Q ss_pred             hcCCCCccccceecCceEEEEEEE-----CCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH--------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF--------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l--------  134 (356)
                      ..++|++.+.||+|+||.||+|.+     ..+++.||+|++..... ...+.+.+|+.+++++ +||||+++        
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            356799999999999999999985     45678999999975433 3456789999999999 89999976        


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeE
Q 039228          135 -----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVL  167 (356)
Q Consensus       135 -----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIl  167 (356)
                                                                     +.++.|++.||.|||+.+   |+||||||+||+
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil  177 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNIL  177 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred             CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCccceEE
Confidence                                                           236789999999999999   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCC
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGD  246 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~  246 (356)
                      ++.++.+||+|||++........  ........+|+.|+|||.+.+..++.++||||||+++|+|++ |..||.......
T Consensus       178 ~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~  255 (313)
T 1t46_A          178 LTHGRITKICDFGLARDIKNDSN--YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS  255 (313)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTT--SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH
T ss_pred             EcCCCCEEEcccccccccccccc--ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh
Confidence            99999999999999986644322  122334567889999999998899999999999999999999 999997543221


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                       ......            .........                  ...+..+.+++.+||+.||.+|||+.+|++.|++
T Consensus       256 -~~~~~~------------~~~~~~~~~------------------~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~  304 (313)
T 1t46_A          256 -KFYKMI------------KEGFRMLSP------------------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEK  304 (313)
T ss_dssp             -HHHHHH------------HHTCCCCCC------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             -HHHHHh------------ccCCCCCCc------------------ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHH
Confidence             111111            111110000                  1233467899999999999999999999999999


Q ss_pred             hhhhh
Q 039228          327 VNNIL  331 (356)
Q Consensus       327 i~~~~  331 (356)
                      +....
T Consensus       305 ~~~~~  309 (313)
T 1t46_A          305 QISES  309 (313)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87764

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-39  Score=305.90  Aligned_cols=240  Identities=21%  Similarity=0.229  Sum_probs=165.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++....  ....+.+.+|+.+++.++||||+++              
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            567999999999999999999999999999999986432  2335678899999999999999976              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+||+++.++.+||+|||+++....
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  180 (367)
T 1cm8_A          104 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADS  180 (367)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             eEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCHHHEEEcCCCCEEEEeeeccccccc
Confidence                                       347889999999999999   99999999999999999999999999986432


Q ss_pred             CCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                             ......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||......+ .+........... .+++.
T Consensus       181 -------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g~~~-~~~~~  251 (367)
T 1cm8_A          181 -------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMKVTGTPP-AEFVQ  251 (367)
T ss_dssp             -------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCC-HHHHH
T ss_pred             -------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCC-HHHHH
Confidence                   1234577999999999887 679999999999999999999999997532211 1111111111100 00000


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..............+.................+.+|+.+||..||.+|||+.++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          252 RLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence            00000000000000000000000011123346789999999999999999999987

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=305.64  Aligned_cols=227  Identities=22%  Similarity=0.290  Sum_probs=177.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECC-------CCeEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDL-------NRAVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l------  134 (356)
                      ..++|.+.+.||+|+||.||+|++..       .+..||||++..... .....+.+|+.+++.+ +||||+++      
T Consensus        67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            35679999999999999999999743       346899999975432 3346788999999999 89999986      


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeE
Q 039228          135 -----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVL  167 (356)
Q Consensus       135 -----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIl  167 (356)
                                                                     +.++.||+.||.|||+.+   |+||||||+|||
T Consensus       147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIl  223 (382)
T 3tt0_A          147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVL  223 (382)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEE
T ss_pred             CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCC---EecCCCCcceEE
Confidence                                                           247889999999999999   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCC
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGD  246 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~  246 (356)
                      ++.++.+||+|||+++.......  ........+|+.|+|||++.+..++.++|||||||++|+|++ |..||....   
T Consensus       224 l~~~~~~kL~DFG~a~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~---  298 (382)
T 3tt0_A          224 VTEDNVMKIADFGLARDIHHIDY--YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP---  298 (382)
T ss_dssp             ECTTCCEEECSCSCCCCSSCCCT--TCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC---
T ss_pred             EcCCCcEEEcccCcccccccccc--cccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC---
Confidence            99999999999999986543221  122334566889999999999999999999999999999999 999986432   


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                        .....         ..+.........                  ..+...+.+++.+||+.||++|||+.+|++.|++
T Consensus       299 --~~~~~---------~~~~~~~~~~~~------------------~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~  349 (382)
T 3tt0_A          299 --VEELF---------KLLKEGHRMDKP------------------SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR  349 (382)
T ss_dssp             --HHHHH---------HHHHTTCCCCCC------------------SSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             --HHHHH---------HHHHcCCCCCCC------------------ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence              11111         111111000000                  1234467899999999999999999999999999


Q ss_pred             hhhhhcc
Q 039228          327 VNNILLP  333 (356)
Q Consensus       327 i~~~~~~  333 (356)
                      +......
T Consensus       350 ~~~~~~~  356 (382)
T 3tt0_A          350 IVALTSN  356 (382)
T ss_dssp             HHHHSCS
T ss_pred             HHHHHhc
Confidence            9876643

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=3.2e-39  Score=300.33  Aligned_cols=248  Identities=22%  Similarity=0.262  Sum_probs=171.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHH--HhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKA--LKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|++  +++.||||++....   ...+..|..+  +..++||||+++             
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   85 (336)
T 3g2f_A           11 DLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM   85 (336)
T ss_dssp             CTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred             ChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence            357899999999999999999987  47999999997432   3344444444  556899999876             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhc---------CCCcEEecCCCCCCeEeCCCCceEEc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHH---------CQELILHCDPKPSNVLLDNDLFAHIG  177 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~---------~~~~iiH~Dlkp~NIll~~~~~~kl~  177 (356)
                                                  ..++.|++.||.|||+.         +   |+||||||+|||++.++.+||+
T Consensus        86 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~---ivH~Dikp~Nill~~~~~~kL~  162 (336)
T 3g2f_A           86 EYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPA---ISHRDLNSRNVLVKNDGTCVIS  162 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCC---EECSSCSGGGEEECTTSCEEEC
T ss_pred             eEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccc---eeecccccceEEEcCCCcEEEe
Confidence                                        45888999999999998         8   9999999999999999999999


Q ss_pred             ccccccccccCCCC----CccCCCCccccccccchhhhcC-------CCCCCccchHhHHHHHHHHHcCCCCCCccccCC
Q 039228          178 DFELARFRQEVSNP----TQSSSNGVRRTIGYTALDYDLG-------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD  246 (356)
Q Consensus       178 Dfg~a~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~  246 (356)
                      |||+++........    .........||+.|+|||++.+       ..++.++|||||||++|||++|..||.......
T Consensus       163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~  242 (336)
T 3g2f_A          163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP  242 (336)
T ss_dssp             CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred             eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence            99999876432211    1122334578999999999987       356678999999999999999977764322211


Q ss_pred             ccHHHHHHHhC-CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHH
Q 039228          247 LNLHNFARMAF-PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQ  325 (356)
Q Consensus       247 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~  325 (356)
                      .....+..... .....++ ...+..... . ...+    .. ......++..+.+|+.+||+.||++|||+.+|++.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~----~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~  314 (336)
T 3g2f_A          243 EYQMAFQTEVGNHPTFEDM-QVLVSREKQ-R-PKFP----EA-WKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMA  314 (336)
T ss_dssp             CCCCTTHHHHCSSCCHHHH-HHHHTTSCC-C-CCCC----TT-CCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHhhhcccCCCchHHHH-Hhhhccccc-C-CCCC----cc-cccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHH
Confidence            10000000111 1111111 100000000 0 0000    00 0011246667899999999999999999999999999


Q ss_pred             Hhhhhhcc
Q 039228          326 SVNNILLP  333 (356)
Q Consensus       326 ~i~~~~~~  333 (356)
                      ++.+....
T Consensus       315 ~ll~~~~~  322 (336)
T 3g2f_A          315 ELMMIWER  322 (336)
T ss_dssp             HHHHCCCC
T ss_pred             HHHHHHHh
Confidence            99877644

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=2.4e-39  Score=307.86  Aligned_cols=217  Identities=20%  Similarity=0.264  Sum_probs=165.4

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l-----------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||+|+++...   ......+..|..++.++ +||||+++           
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  129 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF  129 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence            3567999999999999999999999999999999997542   23345688899999887 89999987           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus       130 lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFGla~~~~~~  206 (396)
T 4dc2_A          130 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP  206 (396)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence                                      458889999999999999   999999999999999999999999999753221


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                          ........||+.|+|||++.+..++.++|||||||++|||++|+.||...........        .....+....
T Consensus       207 ----~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~--------~~~~~~~~~i  274 (396)
T 4dc2_A          207 ----GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ--------NTEDYLFQVI  274 (396)
T ss_dssp             ----TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC--------------CCHHHHHHHH
T ss_pred             ----CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccch--------hhHHHHHHHH
Confidence                1233457899999999999999999999999999999999999999964322110000        0000011111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      +.....                .+......+.+|+.+||+.||.+||++
T Consensus       275 ~~~~~~----------------~p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          275 LEKQIR----------------IPRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             HHCCCC----------------CCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             hccccC----------------CCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence            111100                001223357899999999999999996

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-39  Score=303.06  Aligned_cols=228  Identities=22%  Similarity=0.272  Sum_probs=175.2

Q ss_pred             hhcCCCCccccceecCceEEEEEEE-----CCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      ...++|.+.+.||+|+||.||+|.+     ..++..||||++.... ....+.+.+|+.+++++ +||||+++       
T Consensus        42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  121 (344)
T 1rjb_A           42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  121 (344)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence            3457899999999999999999997     3456789999997442 33456789999999999 89999976       


Q ss_pred             -----------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCC
Q 039228          135 -----------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDP  161 (356)
Q Consensus       135 -----------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dl  161 (356)
                                                                           +.++.||+.||.|||+.+   |+||||
T Consensus       122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Di  198 (344)
T 1rjb_A          122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDL  198 (344)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTC
T ss_pred             CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCC
Confidence                                                                 127789999999999999   999999


Q ss_pred             CCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCC
Q 039228          162 KPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPID  240 (356)
Q Consensus       162 kp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~  240 (356)
                      ||+||+++.++.+||+|||++........  ........+|+.|+|||.+.+..++.++||||||+++|+|+| |..||.
T Consensus       199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  276 (344)
T 1rjb_A          199 AARNVLVTHGKVVKICDFGLARDIMSDSN--YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP  276 (344)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTT--SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred             ChhhEEEcCCCcEEeCCCccCcccccCcc--ceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999986644322  122344567889999999998899999999999999999998 999997


Q ss_pred             ccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHH
Q 039228          241 FMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNA  320 (356)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~v  320 (356)
                      ...... .+......            .......                  ..++..+.+++.+||+.||.+|||+.+|
T Consensus       277 ~~~~~~-~~~~~~~~------------~~~~~~~------------------~~~~~~l~~li~~~l~~dp~~Rps~~~l  325 (344)
T 1rjb_A          277 GIPVDA-NFYKLIQN------------GFKMDQP------------------FYATEEIYIIMQSCWAFDSRKRPSFPNL  325 (344)
T ss_dssp             TCCCSH-HHHHHHHT------------TCCCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             cCCcHH-HHHHHHhc------------CCCCCCC------------------CCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence            543211 11111111            1110000                  1233467899999999999999999999


Q ss_pred             HHHHHHhhhhhc
Q 039228          321 VHDLQSVNNILL  332 (356)
Q Consensus       321 l~~L~~i~~~~~  332 (356)
                      ++.|+.+.....
T Consensus       326 ~~~l~~~~~~~~  337 (344)
T 1rjb_A          326 TSFLGCQLADAE  337 (344)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHHHH
Confidence            999999877653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.5e-39  Score=298.18  Aligned_cols=228  Identities=19%  Similarity=0.314  Sum_probs=169.2

Q ss_pred             hhcCCCCccccceecCceEEEEEEECC---CCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDL---NRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      ...++|.+.+.||+|+||.||+|.+..   ++..||+|++....  ....+.+.+|+.++++++||||+++         
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  110 (313)
T 3brb_A           31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS  110 (313)
T ss_dssp             CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred             cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence            345679999999999999999998764   45689999987543  2334678999999999999999875         


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceE
Q 039228          135 ---------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH  175 (356)
Q Consensus       135 ---------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~k  175 (356)
                                                             +.++.|++.||.|||+.+   |+||||||+||+++.++.+|
T Consensus       111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~k  187 (313)
T 3brb_A          111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVC  187 (313)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCSGGGEEECTTSCEE
T ss_pred             cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCcceEEEcCCCcEE
Confidence                                                   457889999999999999   99999999999999999999


Q ss_pred             EcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHH
Q 039228          176 IGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       176 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~  254 (356)
                      |+|||++........  ........+++.|+|||.+.+..++.++||||||+++|+|++ |..||......  .......
T Consensus       188 l~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~  263 (313)
T 3brb_A          188 VADFGLSKKIYSGDY--YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EMYDYLL  263 (313)
T ss_dssp             ECSCSCC------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHH
T ss_pred             EeecCcceecccccc--cCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HHHHHHH
Confidence            999999986543221  112233456788999999999999999999999999999999 89998643221  1111111


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      ...            ....                  ...++..+.+++.+||+.||.+|||+.+|++.|+.+.+.++.
T Consensus       264 ~~~------------~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~  312 (313)
T 3brb_A          264 HGH------------RLKQ------------------PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD  312 (313)
T ss_dssp             TTC------------CCCC------------------BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred             cCC------------CCCC------------------CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence            100            0000                  013334678999999999999999999999999999887753

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-39  Score=303.95  Aligned_cols=231  Identities=20%  Similarity=0.270  Sum_probs=177.3

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----  134 (356)
                      .+....++|++.+.||+|+||.||+|.+.     .+++.||||+++.... ...+.+.+|+.+++.++||||+++     
T Consensus        41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  120 (343)
T 1luf_A           41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA  120 (343)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence            34445678999999999999999999987     3458999999975432 335678999999999999999986     


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEe
Q 039228          135 --------------------------------------------------------ISIAIDVASALDYLHHHCQELILH  158 (356)
Q Consensus       135 --------------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH  158 (356)
                                                                              +.++.||+.||.|||+++   |+|
T Consensus       121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~---ivH  197 (343)
T 1luf_A          121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVH  197 (343)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCC
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eec
Confidence                                                                    117889999999999999   999


Q ss_pred             cCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCC
Q 039228          159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRK  237 (356)
Q Consensus       159 ~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~  237 (356)
                      |||||+||+++.++.+||+|||+++.......  ........+|+.|+|||++.+..++.++||||||+++|+|++ |..
T Consensus       198 ~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~  275 (343)
T 1luf_A          198 RDLATRNCLVGENMVVKIADFGLSRNIYSADY--YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ  275 (343)
T ss_dssp             SCCSGGGEEECGGGCEEECCCSCHHHHTGGGC--BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCcceEEECCCCeEEEeecCCCcccccCcc--ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999986543221  122234567889999999998899999999999999999999 999


Q ss_pred             CCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          238 PIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       238 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      ||.....     ......        +.+.... ..                  +..++..+.+++.+||+.||++|||+
T Consensus       276 p~~~~~~-----~~~~~~--------~~~~~~~-~~------------------~~~~~~~l~~li~~~l~~~p~~Rps~  323 (343)
T 1luf_A          276 PYYGMAH-----EEVIYY--------VRDGNIL-AC------------------PENCPLELYNLMRLCWSKLPADRPSF  323 (343)
T ss_dssp             TTTTSCH-----HHHHHH--------HHTTCCC-CC------------------CTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             cCCCCCh-----HHHHHH--------HhCCCcC-CC------------------CCCCCHHHHHHHHHHcccCcccCCCH
Confidence            9964321     111110        0000000 00                  01334467899999999999999999


Q ss_pred             HHHHHHHHHhhhhhcc
Q 039228          318 PNAVHDLQSVNNILLP  333 (356)
Q Consensus       318 ~~vl~~L~~i~~~~~~  333 (356)
                      .+|++.|+++.+....
T Consensus       324 ~~~~~~L~~~~~~~~~  339 (343)
T 1luf_A          324 CSIHRILQRMCERAEG  339 (343)
T ss_dssp             HHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999999876643

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-39  Score=306.92  Aligned_cols=227  Identities=21%  Similarity=0.328  Sum_probs=166.6

Q ss_pred             CCCccccceecCceEEEEEEECCC---CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .|.+.+.||+|+||.||+|.+..+   +..||+|.++... ....+.+.+|+.++++++||||+++              
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            467788999999999999997533   3568999986432 3445789999999999999999987              


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++......
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~  246 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  246 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred             EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EecCccchheEEECCCCCEEEeeccccccccccc
Confidence                                     457889999999999999   9999999999999999999999999998654332


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      ...........+|+.|+|||.+.+..++.++||||||+++|||++ |.+||......  ...........          
T Consensus       247 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~~~~~~~~----------  314 (373)
T 3c1x_A          247 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLLQGRR----------  314 (373)
T ss_dssp             -----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHHHHHTTCC----------
T ss_pred             cccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHHHHHcCCC----------
Confidence            222222334567788999999999999999999999999999999 77787643222  11111111100          


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                       ...                   +..++..+.+++.+||+.||++|||+.+|++.|+++...+...
T Consensus       315 -~~~-------------------p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~  360 (373)
T 3c1x_A          315 -LLQ-------------------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE  360 (373)
T ss_dssp             -CCC-------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred             -CCC-------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence             000                   0123446789999999999999999999999999999887543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.3e-39  Score=292.11  Aligned_cols=218  Identities=22%  Similarity=0.316  Sum_probs=163.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc----cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ----GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|.+.  +..||||++.....    ...+.+.+|+.+++.++||||+++            
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCL   83 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEE
T ss_pred             hhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            467999999999999999999986  78999999864422    234678899999999999999986            


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC--------CCceEEcccccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN--------DLFAHIGDFELA  182 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~--------~~~~kl~Dfg~a  182 (356)
                                              +.++.|++.||.|||+.+..+|+||||||+||+++.        ++.+||+|||++
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~  163 (271)
T 3dtc_A           84 VMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA  163 (271)
T ss_dssp             EEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-
T ss_pred             EEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcc
Confidence                                    568899999999999987555889999999999985        778999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      .......      .....||+.|+|||.+.+..++.++||||||+++|+|++|+.||.......    ...         
T Consensus       164 ~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~----~~~---------  224 (271)
T 3dtc_A          164 REWHRTT------KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA----VAY---------  224 (271)
T ss_dssp             ------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH----HHH---------
T ss_pred             ccccccc------ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH----HHH---------
Confidence            7554321      223568999999999998899999999999999999999999997432110    000         


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ...........                  ...++..+.+++.+||+.||.+|||+.++++.|+++
T Consensus       225 ~~~~~~~~~~~------------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          225 GVAMNKLALPI------------------PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             HHHTSCCCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             hhhcCCCCCCC------------------CcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            00000000000                  012334678999999999999999999999999864

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=306.16  Aligned_cols=213  Identities=22%  Similarity=0.228  Sum_probs=164.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhc-CCCChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNI-CHRNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l-----------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||||+++..   .......+..|..++..+ +||||+++           
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            357899999999999999999999999999999999753   223446688899999988 69999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.....
T Consensus       101 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~  177 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCKEGICN  177 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCCHHHEEECCCCCEEEccccceeecccC
Confidence                                      458899999999999999   999999999999999999999999999753222


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                          ........||+.|+|||++.+..++.++|||||||++|||++|..||......     ..            ....
T Consensus       178 ----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-----~~------------~~~i  236 (353)
T 3txo_A          178 ----GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED-----DL------------FEAI  236 (353)
T ss_dssp             ------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HH------------HHHH
T ss_pred             ----CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH-----HH------------HHHH
Confidence                12234467999999999999888999999999999999999999999743211     11            1111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh------HHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV------PNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~------~~vl~  322 (356)
                      +......     +           ......+.+++.+||+.||.+||++      .++++
T Consensus       237 ~~~~~~~-----p-----------~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          237 LNDEVVY-----P-----------TWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             HHCCCCC-----C-----------TTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             HcCCCCC-----C-----------CCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            1111000     0           0122356789999999999999998      66654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-39  Score=303.24  Aligned_cols=232  Identities=11%  Similarity=0.104  Sum_probs=177.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCC--------CeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN--------RAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------  134 (356)
                      .++|.+.+.||+|+||.||+|++..+        ++.||+|++...     +.+.+|+.++++++||||+++        
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            36899999999999999999999873        789999998743     467899999999999999983        


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.||+.||.|||+.+   |+||||||+|||+
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIl~  192 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENE---YVHGNVTAENIFV  192 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCGGGEEE
T ss_pred             ccCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCCHHHEEE
Confidence                                                          458899999999999999   9999999999999


Q ss_pred             CCCC--ceEEcccccccccccCCCC---CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccc
Q 039228          169 DNDL--FAHIGDFELARFRQEVSNP---TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMF  243 (356)
Q Consensus       169 ~~~~--~~kl~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~  243 (356)
                      +.++  .+||+|||+++........   .........||+.|+|||++.+..++.++||||||+++|+|++|+.||....
T Consensus       193 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  272 (352)
T 2jii_A          193 DPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL  272 (352)
T ss_dssp             ETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             cCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence            9988  9999999999876543221   1122244578999999999999999999999999999999999999997543


Q ss_pred             cCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          244 EGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .....+........ .....+.+....                     ....+..+.+++.+||+.||.+|||+.+|++.
T Consensus       273 ~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  330 (352)
T 2jii_A          273 PNTEDIMKQKQKFV-DKPGPFVGPCGH---------------------WIRPSETLQKYLKVVMALTYEEKPPYAMLRNN  330 (352)
T ss_dssp             TCHHHHHHHHHHHH-HSCCCEECTTSC---------------------EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred             cCHHHHHHHHHhcc-CChhhhhhhccc---------------------cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHH
Confidence            22222221111100 000000000000                     00123467899999999999999999999999


Q ss_pred             HHHhhhhhc
Q 039228          324 LQSVNNILL  332 (356)
Q Consensus       324 L~~i~~~~~  332 (356)
                      |+.+.+...
T Consensus       331 L~~~~~~~~  339 (352)
T 2jii_A          331 LEALLQDLR  339 (352)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcC
Confidence            999987763

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=301.33  Aligned_cols=246  Identities=21%  Similarity=0.260  Sum_probs=167.2

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|.+.+.||+|+||.||+|.+..+++.||+|++...... ....+.+|+.+++.++||||+++                
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            5799999999999999999999999999999998644322 12245579999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......    
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~----  154 (324)
T 3mtl_A           82 LDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLARAKSIPT----  154 (324)
T ss_dssp             CSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EEESSCCGGGEEECTTCCEEECSSSEEECC--------
T ss_pred             cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCcCHHHEEECCCCCEEEccCcccccccCCc----
Confidence                                 457889999999999999   9999999999999999999999999997543221    


Q ss_pred             cCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC---CCchHHHhhhhh
Q 039228          194 SSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF---PNRVMDIVNLVL  269 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l  269 (356)
                      .......+|+.|+|||++.+ ..++.++|||||||++|+|++|+.||....... .+........   +...........
T Consensus       155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~  233 (324)
T 3mtl_A          155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE-QLHFIFRILGTPTEETWPGILSNEE  233 (324)
T ss_dssp             --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGCHH
T ss_pred             cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCChHhchhhhcchh
Confidence            22234567999999999876 568999999999999999999999997532211 1111111111   001101100000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH--HHHHhhhh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH--DLQSVNNI  330 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~--~L~~i~~~  330 (356)
                      .....     .+.................+.+|+.+||+.||.+|||+.|+++  .+..+.+.
T Consensus       234 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  291 (324)
T 3mtl_A          234 FKTYN-----YPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGER  291 (324)
T ss_dssp             HHHTC-----CCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCST
T ss_pred             hcccc-----cccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccc
Confidence            00000     0000000000011123346789999999999999999999987  44444443

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=3e-39  Score=297.31  Aligned_cols=228  Identities=20%  Similarity=0.248  Sum_probs=167.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.+++.++||||+++             
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            457999999999999999999999899999999997532   3345678899999999999999986             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++....
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~  187 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFFS  187 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred             EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence                                        457889999999999999   9999999999999999999999999997654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...    .......++..|+|||.+.+..++.++||||||+++|+|++|..||.........+.......          
T Consensus       188 ~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~----------  253 (310)
T 2wqm_A          188 SKT----TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC----------  253 (310)
T ss_dssp             ---------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTT----------
T ss_pred             CCC----ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcc----------
Confidence            322    122345689999999999999999999999999999999999999964321111111111100          


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                       ......                  ....+..+.+++.+||+.||.+|||+.+|++.|+.+.+....+
T Consensus       254 -~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~  302 (310)
T 2wqm_A          254 -DYPPLP------------------SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS  302 (310)
T ss_dssp             -CSCCCC------------------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred             -cCCCCc------------------ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence             000000                  0023346789999999999999999999999999999876544

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=4.4e-39  Score=310.15  Aligned_cols=167  Identities=23%  Similarity=0.300  Sum_probs=138.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|.+.+.||+|+||.||+|++..+++.||||++...  .....+.+.+|+.+|+.++||||+++              
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            57899999999999999999999999999999999753  23345678999999999999999976              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++....
T Consensus       105 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~g---ivHrDlkp~NILl~~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          105 LYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESG---IIHRDLKPANCLLNQDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             EEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred             EEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence                                       458899999999999999   99999999999999999999999999987643


Q ss_pred             CCCCC------------------ccCCCCccccccccchhhh-cCCCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          188 VSNPT------------------QSSSNGVRRTIGYTALDYD-LGSEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       188 ~~~~~------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                      .....                  ........||+.|+|||++ .+..++.++|||||||++|||++|..||.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          182 EKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             -----------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             cccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence            32110                  0123557889999999986 55679999999999999999999666554

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.1e-38  Score=301.49  Aligned_cols=243  Identities=20%  Similarity=0.167  Sum_probs=166.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++....  ....+.+.+|+.+++.++||||+++              
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            578999999999999999999999999999999997532  2344678899999999999999875              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.....
T Consensus       104 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~  180 (371)
T 2xrw_A          104 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS  180 (371)
T ss_dssp             EEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCCCC-------
T ss_pred             ceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCC---eecccCCHHHEEEcCCCCEEEEEeecccccccc
Confidence                                      458889999999999999   999999999999999999999999999765322


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh---
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV---  265 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~---  265 (356)
                           .......||+.|+|||++.+..++.++|||||||++|+|++|..||....... .+...... .......+.   
T Consensus       181 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~-~~~~~~~~~~~~  253 (371)
T 2xrw_A          181 -----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVIEQ-LGTPCPEFMKKL  253 (371)
T ss_dssp             --------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHC--CCCCCHHHHTTS
T ss_pred             -----cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHH-hCCCCHHHHHHh
Confidence                 12234678999999999999999999999999999999999999997532111 11111111 000000000   


Q ss_pred             ----hhhhcccccccccccc----chhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          266 ----NLVLLNDNKVLAGTNS----NMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       266 ----~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                          ...+............    ...-.............+.+|+.+||..||.+|||+.++++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  319 (371)
T 2xrw_A          254 QPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  319 (371)
T ss_dssp             CHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             hhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence                0000000000000000    000000011122345678999999999999999999999873

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=1.9e-39  Score=314.49  Aligned_cols=227  Identities=23%  Similarity=0.359  Sum_probs=174.6

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      +....++|++.+.||+|+||.||+|.+..+ ..||||+++... ...+.+.+|+.+|++++||||+++            
T Consensus       179 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv  256 (452)
T 1fmk_A          179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIV  256 (452)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEE
T ss_pred             cccChhHceeeeeecCCCCeEEEEEEECCC-ceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEE
Confidence            334556799999999999999999999865 779999997543 335789999999999999999986            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.....
T Consensus       257 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  333 (452)
T 1fmk_A          257 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDN  333 (452)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC-----
T ss_pred             ehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCChhhEEECCCCCEEECCCccceecCCC
Confidence                                      468899999999999999   999999999999999999999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .   ........++..|+|||.+.+..++.++||||||+++|||++ |..||......  .....+            ..
T Consensus       334 ~---~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i------------~~  396 (452)
T 1fmk_A          334 E---YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQV------------ER  396 (452)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHH------------HT
T ss_pred             c---eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHH------------Hc
Confidence            1   112233456788999999998899999999999999999999 99999743211  111111            11


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      .....                  .+..++..+.+++.+||+.||++|||+.+|++.|+.+.....+
T Consensus       397 ~~~~~------------------~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~  444 (452)
T 1fmk_A          397 GYRMP------------------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  444 (452)
T ss_dssp             TCCCC------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCC
T ss_pred             CCCCC------------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCc
Confidence            00000                  0113455688999999999999999999999999988766543

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=5.2e-39  Score=305.11  Aligned_cols=216  Identities=19%  Similarity=0.201  Sum_probs=171.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++..........+.+|+.+|+.++||||+++                
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            4579999999999999999999999999999999986655556678999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC--CCceEEcccccccccccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN--DLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                            ..++.||+.||.|||+.+   |+||||||+|||++.  .+.+||+|||+++...... 
T Consensus       130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~-  205 (387)
T 1kob_A          130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE-  205 (387)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeecccchHHeEEecCCCCceEEEecccceecCCCc-
Confidence                                  568899999999999999   999999999999974  5789999999998654321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||++.+..++.++|||||||++|+|++|..||...... ..+.......+.          ..
T Consensus       206 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~-~~~~~i~~~~~~----------~~  270 (387)
T 1kob_A          206 ----IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL-ETLQNVKRCDWE----------FD  270 (387)
T ss_dssp             ----CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH-HHHHHHHHCCCC----------CC
T ss_pred             ----ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHH-HHHHHHHhCCCC----------CC
Confidence                122346899999999999999999999999999999999999999742210 001111000000          00


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...                  .......+.+++.+||+.||.+|||+.++++.
T Consensus       271 ~~~------------------~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          271 EDA------------------FSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             SST------------------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             ccc------------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            000                  00233457899999999999999999999873

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.1e-39  Score=308.75  Aligned_cols=213  Identities=14%  Similarity=0.103  Sum_probs=165.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHH---HHHhhcCCCChHHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAEC---KALKNICHRNLVRFI---------  135 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~---~~l~~l~h~niv~l~---------  135 (356)
                      .++|.+.+.||+|+||.||+|++..+++.||||++...   .....+.+.+|+   .++++++||||++++         
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46799999999999999999999888999999999743   334457788999   556666899998753         


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHHHHhhcCCCcEE
Q 039228          136 ----------------------------------------------------------SIAIDVASALDYLHHHCQELIL  157 (356)
Q Consensus       136 ----------------------------------------------------------~i~~~i~~aL~~LH~~~~~~ii  157 (356)
                                                                                .++.||+.||+|||+++   |+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---iv  228 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---LV  228 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT---EE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCC---ee
Confidence                                                                      37789999999999999   99


Q ss_pred             ecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCC-----------CCCCccchHhHH
Q 039228          158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-----------EVSTNGDAYNYG  226 (356)
Q Consensus       158 H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~sDiwSlG  226 (356)
                      ||||||+|||++.++.+||+|||+++....       ......| +.|+|||++.+.           .++.++||||||
T Consensus       229 HrDikp~NIll~~~~~~kL~DFG~a~~~~~-------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG  300 (377)
T 3byv_A          229 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALG  300 (377)
T ss_dssp             CSCCCGGGEEECTTCCEEECCGGGCEETTC-------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHH
T ss_pred             cCCCCHHHEEEcCCCCEEEEechhheecCC-------cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHH
Confidence            999999999999999999999999985322       1223456 899999999887           899999999999


Q ss_pred             HHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhh
Q 039228          227 ILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAAC  306 (356)
Q Consensus       227 ~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~C  306 (356)
                      |++|||++|+.||........             ...+.. .. .                      .++..+.+|+.+|
T Consensus       301 ~il~elltg~~Pf~~~~~~~~-------------~~~~~~-~~-~----------------------~~~~~~~~li~~~  343 (377)
T 3byv_A          301 LVIYWIWCADLPITKDAALGG-------------SEWIFR-SC-K----------------------NIPQPVRALLEGF  343 (377)
T ss_dssp             HHHHHHHHSSCCC------CC-------------SGGGGS-SC-C----------------------CCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCcccccccc-------------hhhhhh-hc-c----------------------CCCHHHHHHHHHH
Confidence            999999999999964321110             000000 00 0                      2233578999999


Q ss_pred             cCCCcCCCCChHHHHH--HHHHhhhhh
Q 039228          307 SMGSSQDRMNVPNAVH--DLQSVNNIL  331 (356)
Q Consensus       307 l~~dP~~RPs~~~vl~--~L~~i~~~~  331 (356)
                      |+.||++|||+.++++  .+..+.+.+
T Consensus       344 L~~dp~~Rpt~~e~l~hp~f~~~~~~~  370 (377)
T 3byv_A          344 LRYPKEDRLLPLQAMETPEYEQLRTEL  370 (377)
T ss_dssp             TCSSGGGCCCHHHHHTSHHHHHHHHHH
T ss_pred             cCCCchhCCCHHHHhhChHHHHHHHHH
Confidence            9999999999999996  555555443

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.4e-39  Score=291.62  Aligned_cols=224  Identities=23%  Similarity=0.361  Sum_probs=177.1

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ...++|++.+.||+|+||.||+|.+. ++..||+|.+.... ...+.+.+|+.+++.++||||+++              
T Consensus        10 v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e   87 (279)
T 1qpc_A           10 VPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITE   87 (279)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEE
T ss_pred             cCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEe
Confidence            34567999999999999999999986 45789999987543 345788999999999999999986              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++....... 
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-  163 (279)
T 1qpc_A           88 YMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-  163 (279)
T ss_dssp             CCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-
T ss_pred             cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHhhEEEcCCCCEEECCCcccccccCcc-
Confidence                                    468899999999999999   9999999999999999999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                        ........++..|+|||.+.+..++.++||||||+++|+|++ |..||......  .........            .
T Consensus       164 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~~------------~  227 (279)
T 1qpc_A          164 --YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNLERG------------Y  227 (279)
T ss_dssp             --EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTT------------C
T ss_pred             --cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HHHHHHhcc------------c
Confidence              122234556788999999988889999999999999999999 99998643211  111111100            0


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      ....                  ...++..+.+++.+||+.||++|||+.+|++.|+.+.....
T Consensus       228 ~~~~------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  272 (279)
T 1qpc_A          228 RMVR------------------PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATE  272 (279)
T ss_dssp             CCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred             CCCC------------------cccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhcc
Confidence            0000                  01233467899999999999999999999999999887653

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=4.1e-39  Score=299.33  Aligned_cols=227  Identities=22%  Similarity=0.277  Sum_probs=178.1

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCe-----EEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRA-----VVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~-----~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      ...++|.+.+.||+|+||.||+|.+..++.     .||+|.+..... ...+.+.+|+.+++.+ +||||+++       
T Consensus        43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  122 (333)
T 2i1m_A           43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG  122 (333)
T ss_dssp             CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence            346789999999999999999999976554     799999975432 3456789999999999 89999986       


Q ss_pred             --------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC
Q 039228          135 --------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN  170 (356)
Q Consensus       135 --------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~  170 (356)
                                                                  +.++.|++.||.|||+.+   |+||||||+||+++.
T Consensus       123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~~~  199 (333)
T 2i1m_A          123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTN  199 (333)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGCEEEG
T ss_pred             CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC---cccCCcccceEEECC
Confidence                                                        236789999999999999   999999999999999


Q ss_pred             CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccH
Q 039228          171 DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNL  249 (356)
Q Consensus       171 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~  249 (356)
                      ++.+||+|||++........  ........+|+.|+|||.+.+..++.++||||||+++|+|+| |..||....... .+
T Consensus       200 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-~~  276 (333)
T 2i1m_A          200 GHVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNS-KF  276 (333)
T ss_dssp             GGEEEBCCCGGGCCGGGCTT--SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSH-HH
T ss_pred             CCeEEECccccccccccccc--eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhH-HH
Confidence            99999999999986543322  222344567889999999998899999999999999999999 999997532221 11


Q ss_pred             HHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          250 HNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      ........            .....                  ..++..+.+++.+||+.||.+|||+.+|++.|+.+..
T Consensus       277 ~~~~~~~~------------~~~~~------------------~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          277 YKLVKDGY------------QMAQP------------------AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             HHHHHHTC------------CCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCC------------CCCCC------------------CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence            11111111            10000                  0223467899999999999999999999999998876


Q ss_pred             hh
Q 039228          330 IL  331 (356)
Q Consensus       330 ~~  331 (356)
                      ..
T Consensus       327 ~~  328 (333)
T 2i1m_A          327 ED  328 (333)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.9e-39  Score=306.23  Aligned_cols=230  Identities=21%  Similarity=0.233  Sum_probs=159.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++....  ....+.+.+|+.+++.++||||+++              
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            578999999999999999999999999999999986532  2345678899999999999999976              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++....
T Consensus       108 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~  184 (367)
T 2fst_X          108 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTAD  184 (367)
T ss_dssp             CCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECC---------
T ss_pred             eEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHhhEEECCCCCEEEeeccccccccc
Confidence                                       458899999999999999   99999999999999999999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC-------
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN-------  259 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~-------  259 (356)
                             ......||..|+|||++.+ ..++.++|||||||++|||++|+.||...... ..+..........       
T Consensus       185 -------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~~~~~  256 (367)
T 2fst_X          185 -------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGTPGAELLKK  256 (367)
T ss_dssp             -------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCHHHHTT
T ss_pred             -------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHHH
Confidence                   1234678999999999887 67899999999999999999999999753221 1111111111110       


Q ss_pred             ----chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          260 ----RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       260 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                          ....++.. +.....       .-....    .......+.+|+.+||..||.+|||+.++++.
T Consensus       257 ~~~~~~~~~~~~-~~~~~~-------~~~~~~----~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          257 ISSESARNYIQS-LTQMPK-------MNFANV----FIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             CCCHHHHHHHHT-SCCCCC-------CCHHHH----TTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhHHHHHHHhc-cCCCCC-------CCHHHH----CCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence                00011110 000000       000000    01223457899999999999999999999863

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1.3e-39  Score=298.28  Aligned_cols=232  Identities=20%  Similarity=0.284  Sum_probs=175.3

Q ss_pred             CCCCccccceecCceEEEEEE----ECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGV----FDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~----~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      +.|++.+.||+|+||.||+|+    ...+++.||+|++.... ....+.+.+|+.+++.++||||+++            
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            458999999999999999999    45678999999997443 3345778999999999999999986            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++....
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  177 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIE  177 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCC---cccCCCchheEEEcCCCCEEECccccccccc
Confidence                                        458889999999999999   9999999999999999999999999998765


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC--C--chH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP--N--RVM  262 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~--~--~~~  262 (356)
                      .... .........+|..|+|||.+.+..++.++||||||+++|+|++|..|+...      .........+  .  ...
T Consensus       178 ~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~  250 (302)
T 4e5w_A          178 TDKE-YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP------MALFLKMIGPTHGQMTVT  250 (302)
T ss_dssp             TTCC-EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH------HHHHHHHHCSCCGGGHHH
T ss_pred             CCCc-ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch------hhHHhhccCCcccccCHH
Confidence            4322 112334456788899999999888999999999999999999999986421      1111111111  1  111


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhh
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVN  328 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~  328 (356)
                      .+.........               ......++..+.+++.+||+.||.+|||+.+|++.|+++.
T Consensus       251 ~~~~~~~~~~~---------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          251 RLVNTLKEGKR---------------LPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHHHHHTTCC---------------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCC---------------CCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            11111111000               0011134456889999999999999999999999999875

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.6e-39  Score=291.93  Aligned_cols=232  Identities=21%  Similarity=0.306  Sum_probs=181.0

Q ss_pred             cCCCCccc-cceecCceEEEEEEEC--CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLIN-LIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~-~lg~G~~g~Vy~~~~~--~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|.+.+ .||+|+||.||+|.+.  .++..||+|++.... ....+.+.+|+.+++.++||||+++            
T Consensus         8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv   87 (287)
T 1u59_A            8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLV   87 (287)
T ss_dssp             GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEE
Confidence            34577776 9999999999999864  457889999997643 3345678999999999999999986            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++.......
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~  164 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADD  164 (287)
T ss_dssp             EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred             EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCC---EeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence                                     568899999999999999   9999999999999999999999999998664332


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .. ........+|+.|+|||++.+..++.++||||||+++|+|++ |..||.....  ..........            
T Consensus       165 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~i~~~------------  229 (287)
T 1u59_A          165 SY-YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFIEQG------------  229 (287)
T ss_dssp             CE-ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHHHTT------------
T ss_pred             ce-eeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHhcC------------
Confidence            21 122233456889999999988889999999999999999999 9999974321  1111111110            


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccc
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFK  338 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~  338 (356)
                      .....                  +..++..+.+++..||+.||.+||++.+|++.|+.+..+......+.
T Consensus       230 ~~~~~------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~~  281 (287)
T 1u59_A          230 KRMEC------------------PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGH  281 (287)
T ss_dssp             CCCCC------------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             CcCCC------------------CCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccCC
Confidence            00000                  01334467899999999999999999999999999998876655443

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=8.1e-39  Score=304.00  Aligned_cols=169  Identities=18%  Similarity=0.244  Sum_probs=144.3

Q ss_pred             cCCCCccccceec--CceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVG--SFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G--~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|  +||.||+|++..+++.||||++....  ....+.+.+|+.+++.++||||+++            
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            5679999999999  99999999999999999999997543  2334678889999999999999987            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||.+.....
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~  180 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMG---YVHRSVKASHILISVDGKVYLSGLRSNLSMIS  180 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred             EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence                                       458889999999999999   99999999999999999999999999875432


Q ss_pred             CCC---CCccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          188 VSN---PTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       188 ~~~---~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ...   ..........||+.|+|||++.+  ..++.++|||||||++|+|++|+.||...
T Consensus       181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  240 (389)
T 3gni_B          181 HGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  240 (389)
T ss_dssp             TTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence            211   11122334578999999999987  57999999999999999999999999754

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=7.2e-39  Score=296.45  Aligned_cols=209  Identities=23%  Similarity=0.230  Sum_probs=168.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|+...+++.||+|++....   ....+.+.+|+.+++.++||||+++             
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            467999999999999999999999999999999997542   2345678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+++   |+||||||+|||++.+|.+||+|||+++....   
T Consensus        85 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~---  158 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPD---  158 (318)
T ss_dssp             ECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSS---
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChheEEEcCCCCEEEeecCcceecCC---
Confidence                                    457889999999999999   99999999999999999999999999986532   


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||++.+..++.++|||||||++|||++|..||.....     ....        ..++...+.
T Consensus       159 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-----~~~~--------~~i~~~~~~  221 (318)
T 1fot_A          159 ----VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MKTY--------EKILNAELR  221 (318)
T ss_dssp             ----CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHH--------HHHHHCCCC
T ss_pred             ----ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH-----HHHH--------HHHHhCCCC
Confidence                12346789999999999999999999999999999999999999964211     1111        111111100


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                        ..                  ......+.+++.+||..||.+||     ++.+|++
T Consensus       222 --~p------------------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          222 --FP------------------PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             --CC------------------TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             --CC------------------CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence              00                  01223568999999999999999     7888874

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=299.85  Aligned_cols=237  Identities=20%  Similarity=0.296  Sum_probs=180.8

Q ss_pred             cCCCCccccceecCceEEEEEEE----CCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|.+    ..+++.||||++........+.+.+|+.+++.++||||+++            
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            45699999999999999999994    55789999999987666666789999999999999999976            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++....
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~  196 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLP  196 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence                                        457889999999999999   9999999999999999999999999998764


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC---c-hH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN---R-VM  262 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~---~-~~  262 (356)
                      ..... ........++..|+|||.+.+..++.++||||||+++|+|++|..||....      ..+.......   . ..
T Consensus       197 ~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~------~~~~~~~~~~~~~~~~~  269 (326)
T 2w1i_A          197 QDKEY-YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP------AEFMRMIGNDKQGQMIV  269 (326)
T ss_dssp             SSCSE-EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH------HHHHHHHCTTCCTHHHH
T ss_pred             ccccc-cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH------HHHHHhhccccchhhhH
Confidence            33211 112233456778999999988889999999999999999999999975321      1111111100   0 00


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ..+...+.....              ......++..+.+++.+||+.||++|||+.+|++.|+.+.+++
T Consensus       270 ~~~~~~~~~~~~--------------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l  324 (326)
T 2w1i_A          270 FHLIELLKNNGR--------------LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM  324 (326)
T ss_dssp             HHHHHHHHTTCC--------------CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCC--------------CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence            000011100000              0001134557889999999999999999999999999998875

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=4.5e-40  Score=304.33  Aligned_cols=234  Identities=20%  Similarity=0.279  Sum_probs=177.2

Q ss_pred             CCccccceecCceEEEEEEE----CCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           74 FPLINLIGVGSFDAVYQGVF----DLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      |++.+.||+|+||.||++.+    ..+++.||||++..... ...+.+.+|+.++++++||||+++              
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            49999999999999988865    34689999999975532 335678999999999999999986              


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              +.++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++........
T Consensus       113 v~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~---ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~  189 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHE  189 (318)
T ss_dssp             EECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCGGGCEECCTTCS
T ss_pred             EEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCchheEEEcCCCCEEECCcccccccccccc
Confidence                                    568899999999999999   99999999999999999999999999987644321


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC------chHHH
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN------RVMDI  264 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~------~~~~~  264 (356)
                       .........+|..|+|||++.+..++.++||||||+++|+|++|..||......   ....  .....      .+...
T Consensus       190 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~---~~~~--~~~~~~~~~~~~~~~~  263 (318)
T 3lxp_A          190 -YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTK---FLEL--IGIAQGQMTVLRLTEL  263 (318)
T ss_dssp             -EEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH---HHHH--HCSCCHHHHHHHHHHH
T ss_pred             -ccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchh---hhhh--hcccccchhHHHHHHH
Confidence             112233456788899999999888999999999999999999999998642111   0000  00110      11111


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                      +.......                  ....++..+.+|+.+||+.||.+|||+.+|++.|+.+.+.+...
T Consensus       264 ~~~~~~~~------------------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~  315 (318)
T 3lxp_A          264 LERGERLP------------------RPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ  315 (318)
T ss_dssp             HHTTCCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred             HhcccCCC------------------CCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence            11111111                  11134457889999999999999999999999999999887554

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=4.3e-39  Score=301.64  Aligned_cols=210  Identities=26%  Similarity=0.331  Sum_probs=166.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      +.|.+.+.||+|+||.||+|++..+++.||||++.....   ...+.+.+|+.++++++||||+++              
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            348999999999999999999999999999999975432   233578899999999999999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   |+||||||+|||++.++.+||+|||++.....    
T Consensus       134 e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~----  206 (348)
T 1u5q_A          134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAP----  206 (348)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSSSS----
T ss_pred             ecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeCCCCHHHEEECCCCCEEEeeccCceecCC----
Confidence                                   458889999999999999   99999999999999999999999999975432    


Q ss_pred             CccCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          192 TQSSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                          .....||+.|+|||++.   +..++.++|||||||++|||++|+.||....... .+........+         .
T Consensus       207 ----~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~~~~---------~  272 (348)
T 1u5q_A          207 ----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNESP---------A  272 (348)
T ss_dssp             ----BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCC---------C
T ss_pred             ----CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcCCC---------C
Confidence                12356899999999985   5678999999999999999999999986432110 00111000000         0


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +..                     ......+.+++.+||+.||++|||+.+|++.
T Consensus       273 ~~~---------------------~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h  306 (348)
T 1u5q_A          273 LQS---------------------GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  306 (348)
T ss_dssp             CCC---------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             CCC---------------------CCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence            000                     0223357899999999999999999999864

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.7e-39  Score=289.30  Aligned_cols=220  Identities=20%  Similarity=0.366  Sum_probs=174.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+. ++..||+|++..... ..+.+.+|+.+++.++||||+++                
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (267)
T 3t9t_A            7 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF   84 (267)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred             hhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence            457999999999999999999997 458899999975533 34678999999999999999986                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......   
T Consensus        85 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~---  158 (267)
T 3t9t_A           85 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ---  158 (267)
T ss_dssp             CTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH---
T ss_pred             CCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEECCCCCEEEccccccccccccc---
Confidence                                  458899999999999999   9999999999999999999999999998653211   


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ........++..|+|||++.+..++.++||||||+++|+|++ |..||......  .........            ...
T Consensus       159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~i~~~------------~~~  224 (267)
T 3t9t_A          159 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTG------------FRL  224 (267)
T ss_dssp             HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTT------------CCC
T ss_pred             ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH--HHHHHHhcC------------CcC
Confidence            122234556788999999998889999999999999999999 89998642211  111111000            000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ...                  ......+.+++.+||+.||++|||+.++++.|+++.++
T Consensus       225 ~~~------------------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (267)
T 3t9t_A          225 YKP------------------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  265 (267)
T ss_dssp             CCC------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCC------------------ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence            000                  02233578999999999999999999999999998764

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=7.7e-39  Score=300.99  Aligned_cols=240  Identities=20%  Similarity=0.195  Sum_probs=170.4

Q ss_pred             hhHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-----------chHHHHHHHHHHhhcCCCC
Q 039228           62 EYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-----------ASKSFMAECKALKNICHRN  130 (356)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~n  130 (356)
                      ....++....++|.+.+.||+|+||.||+|.+.. +..||||++......           ..+.+.+|+.++++++|||
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   90 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPN   90 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcC
Confidence            3456777888999999999999999999999865 799999998543211           1367899999999999999


Q ss_pred             hHHH------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          131 LVRF------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       131 iv~l------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                      |+++                                          ..++.||+.||.|||+.+   |+||||||+||++
T Consensus        91 iv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~NIl~  167 (362)
T 3pg1_A           91 ILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAG---VVHRDLHPGNILL  167 (362)
T ss_dssp             BCCCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEE
T ss_pred             ccceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCc---CEecCCChHHEEE
Confidence            9976                                          458899999999999999   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~  247 (356)
                      +.++.+||+|||++......     .......+|+.|+|||++.+ ..++.++|||||||++|+|++|+.||...... .
T Consensus       168 ~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~  241 (362)
T 3pg1_A          168 ADNNDITICDFNLAREDTAD-----ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY-N  241 (362)
T ss_dssp             CTTCCEEECCTTC--------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-H
T ss_pred             cCCCCEEEEecCcccccccc-----cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHH-H
Confidence            99999999999999754322     12234567899999999877 67899999999999999999999999753211 1


Q ss_pred             cHHHHHHHhCCCchHHH-----------hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC
Q 039228          248 NLHNFARMAFPNRVMDI-----------VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN  316 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs  316 (356)
                      .+...............           +...+....           ...+..........+.+|+.+||+.||.+|||
T Consensus       242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt  310 (362)
T 3pg1_A          242 QLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVP-----------ARAWTAVVPTADPVALDLIAKMLEFNPQRRIS  310 (362)
T ss_dssp             HHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCC-----------CCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             HHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCC-----------hhhHHhhCCCCCHHHHHHHHHHhcCChhhCCC
Confidence            11222221111111111           111110000           00011111123446789999999999999999


Q ss_pred             hHHHHH
Q 039228          317 VPNAVH  322 (356)
Q Consensus       317 ~~~vl~  322 (356)
                      +.++++
T Consensus       311 ~~ell~  316 (362)
T 3pg1_A          311 TEQALR  316 (362)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999986

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=7.8e-39  Score=300.08  Aligned_cols=209  Identities=20%  Similarity=0.181  Sum_probs=169.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|+.+++.++||||+++             
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            467999999999999999999999999999999997432   2345678899999999999999986             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.....  
T Consensus       120 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~--  194 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR--  194 (350)
T ss_dssp             EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSC--
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCccceEEECCCCCEEEcccccceeccCC--
Confidence                                    458899999999999999   999999999999999999999999999865321  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                           .....||+.|+|||++.+..++.++|||||||++|||++|..||.....     .....        .+....+.
T Consensus       195 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~--------~i~~~~~~  256 (350)
T 1rdq_E          195 -----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP-----IQIYE--------KIVSGKVR  256 (350)
T ss_dssp             -----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHH--------HHHHCCCC
T ss_pred             -----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH-----HHHHH--------HHHcCCCC
Confidence                 2346789999999999999999999999999999999999999964211     11110        11111000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                        .+                  ......+.+++.+||+.||.+||+     +.+|++
T Consensus       257 --~p------------------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          257 --FP------------------SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             --CC------------------TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             --CC------------------CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence              00                  022335789999999999999998     777765

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=7.9e-39  Score=299.48  Aligned_cols=216  Identities=20%  Similarity=0.267  Sum_probs=165.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....   ....+.+.+|..++.++ +||||+++            
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            457999999999999999999999999999999997542   23345688899999987 89999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++......
T Consensus        88 v~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~  164 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERG---IIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG  164 (345)
T ss_dssp             EECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEEeccccccccCCC
Confidence                                     457889999999999999   9999999999999999999999999997532221


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          .......||+.|+|||++.+..++.++|||||||++|||++|+.||...........        .....+.....
T Consensus       165 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~--------~~~~~~~~~i~  232 (345)
T 3a8x_A          165 ----DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ--------NTEDYLFQVIL  232 (345)
T ss_dssp             ----CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC---------------CHHHHHHHHH
T ss_pred             ----CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCccccccccc--------ccHHHHHHHHH
Confidence                223446789999999999999999999999999999999999999964322110000        00000111111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      .....                .+......+.+++.+||+.||.+||++
T Consensus       233 ~~~~~----------------~p~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          233 EKQIR----------------IPRSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             HCCCC----------------CCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             cCCCC----------------CCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence            10000                000223357899999999999999996

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.4e-39  Score=299.83  Aligned_cols=222  Identities=22%  Similarity=0.268  Sum_probs=168.6

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc-----CccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-----CQGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..++..||+|++...     .....+.+.+|+.++++++||||+++         
T Consensus        23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~  102 (345)
T 3hko_A           23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQY  102 (345)
T ss_dssp             HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCCe
Confidence            3456799999999999999999999999999999998643     23445788999999999999999976         


Q ss_pred             --------------------------------------------------------------------HHHHHHHHHHHH
Q 039228          135 --------------------------------------------------------------------ISIAIDVASALD  146 (356)
Q Consensus       135 --------------------------------------------------------------------~~i~~~i~~aL~  146 (356)
                                                                                          ..++.|++.||.
T Consensus       103 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~  182 (345)
T 3hko_A          103 ICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALH  182 (345)
T ss_dssp             EEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence                                                                                137889999999


Q ss_pred             HHhhcCCCcEEecCCCCCCeEeCCCC--ceEEcccccccccccCCCCCccCCCCccccccccchhhhcC--CCCCCccch
Q 039228          147 YLHHHCQELILHCDPKPSNVLLDNDL--FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDA  222 (356)
Q Consensus       147 ~LH~~~~~~iiH~Dlkp~NIll~~~~--~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDi  222 (356)
                      |||+.+   |+||||||+||+++.++  .+||+|||++..................||+.|+|||++.+  ..++.++||
T Consensus       183 ~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Di  259 (345)
T 3hko_A          183 YLHNQG---ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDA  259 (345)
T ss_dssp             HHHHTT---EECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHH
T ss_pred             HHHHCC---ccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHH
Confidence            999999   99999999999998766  89999999998765433322233445678999999999875  678999999


Q ss_pred             HhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHH
Q 039228          223 YNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRI  302 (356)
Q Consensus       223 wSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  302 (356)
                      ||||+++|+|++|+.||....... ...            .++.........                ........+.++
T Consensus       260 wslG~il~el~~g~~pf~~~~~~~-~~~------------~~~~~~~~~~~~----------------~~~~~~~~~~~l  310 (345)
T 3hko_A          260 WSAGVLLHLLLMGAVPFPGVNDAD-TIS------------QVLNKKLCFENP----------------NYNVLSPLARDL  310 (345)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSSHHH-HHH------------HHHHCCCCTTSG----------------GGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCChHH-HHH------------HHHhcccccCCc----------------ccccCCHHHHHH
Confidence            999999999999999997432211 111            111111100000                000223457899


Q ss_pred             HHhhcCCCcCCCCChHHHHH
Q 039228          303 GAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       303 ~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +.+||+.||.+|||+.++++
T Consensus       311 i~~~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          311 LSNLLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HHHHSCSCTTTSCCHHHHHH
T ss_pred             HHHHcCCChhHCCCHHHHhc
Confidence            99999999999999999987

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=4e-39  Score=301.35  Aligned_cols=213  Identities=23%  Similarity=0.272  Sum_probs=168.0

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH----------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF----------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l----------  134 (356)
                      ...++|.+.+.||+|+||.||+|+++.+++.||||+++...   ......+..|..++..+ +||||+++          
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            34678999999999999999999999999999999997542   23456678899999876 89999986          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+++   |+||||||+|||++.+|.+||+|||+++....
T Consensus        94 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  170 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENML  170 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCChhhEEECCCCCEEEeEChhhhhccc
Confidence                                       457889999999999999   99999999999999999999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..    .......||+.|+|||++.+..++.++|||||||++|||++|..||.....     .....            .
T Consensus       171 ~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~------------~  229 (345)
T 1xjd_A          171 GD----AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE-----EELFH------------S  229 (345)
T ss_dssp             TT----CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHH------------H
T ss_pred             CC----CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH-----HHHHH------------H
Confidence            21    223456789999999999999999999999999999999999999964221     11111            0


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH-HHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP-NAV  321 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~-~vl  321 (356)
                      .......     .+           ......+.+++.+||..||.+||++. +|+
T Consensus       230 i~~~~~~-----~p-----------~~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          230 IRMDNPF-----YP-----------RWLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             HHHCCCC-----CC-----------TTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             HHhCCCC-----CC-----------cccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            0000000     00           01223568999999999999999997 554

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.8e-39  Score=296.79  Aligned_cols=225  Identities=19%  Similarity=0.194  Sum_probs=161.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l---------------  134 (356)
                      ..+|++.+.||+|+||.||+|.+..+++.||||++........+.+.+|+.++.++. ||||+++               
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~  106 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ  106 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence            457999999999999999999999999999999987666666678899999999996 9999975               


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a  182 (356)
                                                      +.++.||+.||.|||+.+ .+|+||||||+|||++.++.+||+|||++
T Consensus       107 ~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~-~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~  185 (337)
T 3ll6_A          107 AEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQK-PPIIHRDLKVENLLLSNQGTIKLCDFGSA  185 (337)
T ss_dssp             EEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSS-SCCBCCCCCGGGCEECTTSCEEBCCCTTC
T ss_pred             ceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC-CCEEEccCCcccEEECCCCCEEEecCccc
Confidence                                            458889999999999874 45999999999999999999999999999


Q ss_pred             cccccCCCCC--------ccCCCCccccccccchhhh---cCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHH
Q 039228          183 RFRQEVSNPT--------QSSSNGVRRTIGYTALDYD---LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN  251 (356)
Q Consensus       183 ~~~~~~~~~~--------~~~~~~~~gt~~y~aPE~~---~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~  251 (356)
                      ..........        ........||+.|+|||++   .+..++.++||||||+++|+|++|..||......     .
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-----~  260 (337)
T 3ll6_A          186 TTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL-----R  260 (337)
T ss_dssp             BCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------------
T ss_pred             eeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH-----H
Confidence            8654322111        0111245689999999998   5667889999999999999999999999642111     0


Q ss_pred             HHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          252 FARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      .            +.........                  ......+.+++.+||+.||.+|||+.++++.|+.+....
T Consensus       261 ~------------~~~~~~~~~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~  310 (337)
T 3ll6_A          261 I------------VNGKYSIPPH------------------DTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR  310 (337)
T ss_dssp             -----------------CCCCTT------------------CCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             h------------hcCcccCCcc------------------cccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence            0            0100000000                  011123678999999999999999999999999998754

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=5.3e-39  Score=295.98  Aligned_cols=232  Identities=20%  Similarity=0.240  Sum_probs=180.3

Q ss_pred             HHHHHhhcCCCCccccceecCceEEEEEEE-----CCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH--
Q 039228           64 YESLLKATDGFPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF--  134 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~-----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l--  134 (356)
                      ...+....++|++.+.||+|+||.||+|.+     ..+++.||||++..... ...+.+.+|+.++.++ +||||+++  
T Consensus        19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~   98 (316)
T 2xir_A           19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   98 (316)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence            345555678899999999999999999985     34678999999975433 3345788999999999 68999976  


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCC
Q 039228          135 ----------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPK  162 (356)
Q Consensus       135 ----------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlk  162 (356)
                                                                          +.++.|++.||.|||+.+   |+|||||
T Consensus        99 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---i~H~dik  175 (316)
T 2xir_A           99 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLA  175 (316)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT---CCCSCCS
T ss_pred             EEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC---cccccCc
Confidence                                                                236789999999999999   9999999


Q ss_pred             CCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCc
Q 039228          163 PSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDF  241 (356)
Q Consensus       163 p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~  241 (356)
                      |+||+++.++.+||+|||+++.......  ........+|+.|+|||++.+..++.++||||||+++|+|++ |..||..
T Consensus       176 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~  253 (316)
T 2xir_A          176 ARNILLSEKNVVKICDFGLARDIYKDPD--YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG  253 (316)
T ss_dssp             GGGEEECGGGCEEECCCGGGSCTTTCTT--SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             cceEEECCCCCEEECCCccccccccCcc--ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcc
Confidence            9999999999999999999986543221  122334667889999999999999999999999999999998 9999975


Q ss_pred             cccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHH
Q 039228          242 MFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAV  321 (356)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl  321 (356)
                      ..... .+.........            ....                  ......+.+++.+||+.||.+|||+.+|+
T Consensus       254 ~~~~~-~~~~~~~~~~~------------~~~~------------------~~~~~~l~~li~~~l~~dp~~Rps~~ell  302 (316)
T 2xir_A          254 VKIDE-EFCRRLKEGTR------------MRAP------------------DYTTPEMYQTMLDCWHGEPSQRPTFSELV  302 (316)
T ss_dssp             CCCSH-HHHHHHHHTCC------------CCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             cchhH-HHHHHhccCcc------------CCCC------------------CCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence            33221 11111111100            0000                  02233578999999999999999999999


Q ss_pred             HHHHHhhhhh
Q 039228          322 HDLQSVNNIL  331 (356)
Q Consensus       322 ~~L~~i~~~~  331 (356)
                      +.|+.+.+..
T Consensus       303 ~~L~~~~~~~  312 (316)
T 2xir_A          303 EHLGNLLQAN  312 (316)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9999987653

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=5.8e-39  Score=300.89  Aligned_cols=215  Identities=20%  Similarity=0.242  Sum_probs=155.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++....  ..+.+.+|+.++++++||||+++               
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence            3567999999999999999999999999999999997542  34567889999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEcccccccccccCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a~~~~~~~  189 (356)
                                            ..++.|++.||.|||+.+   |+||||||+|||++.   ++.+||+|||+++..... 
T Consensus       129 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~-  204 (349)
T 2w4o_A          129 LVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ-  204 (349)
T ss_dssp             CCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESSSSTTCCEEECCCC---------
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEecCCCcccEEEecCCCCCCEEEccCccccccCcc-
Confidence                                  568899999999999999   999999999999975   889999999999865332 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          .......||+.|+|||++.+..++.++|||||||++|||++|..||.........+..........     ..+. 
T Consensus       205 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~-----~~~~-  274 (349)
T 2w4o_A          205 ----VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYF-----ISPW-  274 (349)
T ss_dssp             ------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCC-----CTTT-
T ss_pred             ----cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCcc-----CCch-
Confidence                122346789999999999999999999999999999999999999964322111111111000000     0000 


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                            .......+.+|+.+||+.||++|||+.++++
T Consensus       275 ----------------------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          275 ----------------------WDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             ----------------------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ----------------------hhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                  0023345789999999999999999999986

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.1e-38  Score=288.15  Aligned_cols=217  Identities=22%  Similarity=0.276  Sum_probs=171.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.+++.++||||+++               
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            356999999999999999999999999999999997543 3345678899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||++........  
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--  160 (276)
T 2yex_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR--  160 (276)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECEETTE--
T ss_pred             ecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCC---eeccCCChHHEEEccCCCEEEeeCCCccccCCCcc--
Confidence                                  568999999999999999   99999999999999999999999999976543221  


Q ss_pred             ccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      ........|++.|+|||.+.+..+ +.++||||||+++|+|++|..||............+......          . .
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~----------~-~  229 (276)
T 2yex_A          161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY----------L-N  229 (276)
T ss_dssp             ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT----------S-T
T ss_pred             hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc----------c-C
Confidence            122334678999999999987765 678999999999999999999997544332222222111000          0 0


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .                   .......+.+++.+||+.||.+|||+.++++
T Consensus       230 ~-------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          230 P-------------------WKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             T-------------------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             c-------------------hhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence            0                   0022335678999999999999999999876

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=1.3e-39  Score=296.40  Aligned_cols=215  Identities=17%  Similarity=0.271  Sum_probs=168.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC-------eEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR-------AVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..++       ..||+|++........+.+.+|+.++++++||||+++         
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            457999999999999999999988765       5799999987666667889999999999999999986         


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc--------eEEc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF--------AHIG  177 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~--------~kl~  177 (356)
                                                   +.++.|++.||.|||+.+   |+||||||+|||++.++.        +||+
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~  163 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLS  163 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCC---eECCCcCcceEEEecCCcccccccceeeec
Confidence                                         458899999999999999   999999999999998877        9999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCC-CCCccccCCccHHHHHHH
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRK-PIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~-Pf~~~~~~~~~~~~~~~~  255 (356)
                      |||++.....        .....+|..|+|||++.+ ..++.++||||||+++|+|++|.. ||... ... ........
T Consensus       164 Dfg~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~-~~~-~~~~~~~~  233 (289)
T 4fvq_A          164 DPGISITVLP--------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL-DSQ-RKLQFYED  233 (289)
T ss_dssp             CCCSCTTTSC--------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS-CHH-HHHHHHHT
T ss_pred             cCcccccccC--------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc-chH-HHHHHhhc
Confidence            9999864321        123557889999999987 678999999999999999999654 44321 110 00010000


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ..          .+..                      .....+.+++.+||+.||++|||+.++++.|+++...
T Consensus       234 ~~----------~~~~----------------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p  276 (289)
T 4fvq_A          234 RH----------QLPA----------------------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP  276 (289)
T ss_dssp             TC----------CCCC----------------------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred             cC----------CCCC----------------------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence            00          0000                      1112467899999999999999999999999888654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=7.2e-39  Score=301.61  Aligned_cols=218  Identities=20%  Similarity=0.242  Sum_probs=161.4

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||||++.... ...+.+.+|+.+++.++||||+++               
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e   96 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME   96 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence            3578999999999999999999999999999999997543 234678899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc--eEEcccccccccccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF--AHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~--~kl~Dfg~a~~~~~~~~  190 (356)
                                            ..++.|++.||.|||+++   |+||||||+|||++.++.  +||+|||+++.....  
T Consensus        97 ~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~---ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~--  171 (361)
T 3uc3_A           97 YASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH--  171 (361)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEcCCCCceEEEeecCcccccccc--
Confidence                                  458899999999999999   999999999999987765  999999999743221  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCc-cchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTN-GDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                         .......||+.|+|||++.+..++.+ +|||||||++|+|++|+.||....... ........        +.....
T Consensus       172 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~--------~~~~~~  239 (361)
T 3uc3_A          172 ---SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQR--------ILSVKY  239 (361)
T ss_dssp             ------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHH--------HHTTCC
T ss_pred             ---CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHH--------HhcCCC
Confidence               22234578999999999988887666 899999999999999999997543222 11111111        111000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ....                  .......+.+|+.+||+.||.+|||+.++++.
T Consensus       240 ~~~~------------------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          240 SIPD------------------DIRISPECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             CCCT------------------TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             CCCC------------------cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence            0000                  00122356899999999999999999999874

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.9e-38  Score=288.00  Aligned_cols=217  Identities=18%  Similarity=0.199  Sum_probs=170.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++....  ....+.+.+|+.++++++||||+++             
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            3578999999999999999999999999999999997543  2334678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc---eEEccccccccccc
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF---AHIGDFELARFRQE  187 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~---~kl~Dfg~a~~~~~  187 (356)
                                              ..++.+++.||.|||+.+   |+||||||+||+++.++.   +||+|||++.....
T Consensus        84 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  160 (284)
T 3kk8_A           84 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  160 (284)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence                                    458899999999999999   999999999999986655   99999999976543


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..     ......||+.|+|||++.+..++.++||||||+++|+|++|..||......  ..........          
T Consensus       161 ~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~----------  223 (284)
T 3kk8_A          161 SE-----AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKAGA----------  223 (284)
T ss_dssp             SC-----BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTC----------
T ss_pred             Cc-----cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHhcc----------
Confidence            21     223466899999999999999999999999999999999999999642211  1111111000          


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       .....                .........+.+++.+||+.||++|||+.++++.
T Consensus       224 -~~~~~----------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          224 -YDYPS----------------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             -CCCCT----------------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             -ccCCc----------------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence             00000                0000223457899999999999999999999873

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-39  Score=296.80  Aligned_cols=208  Identities=18%  Similarity=0.180  Sum_probs=159.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhc-CCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNI-CHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||+||+|++..+++.||||++.....  ........|+..+..+ +||||+++              
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            469999999999999999999999999999999864322  2234455666665555 89999976              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++.......  
T Consensus       137 e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~--  211 (311)
T 3p1a_A          137 ELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG--  211 (311)
T ss_dssp             ECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECGGGCEEECCCTTCEECC-----
T ss_pred             eccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EecCCCCHHHEEECCCCCEEEccceeeeecccCC--
Confidence                                   458899999999999999   9999999999999999999999999997654322  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                         ......||+.|+|||++.+ .++.++|||||||++|||++|..|+...    ...........+.        .+  
T Consensus       212 ---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~~~~~~~~~~~~~--------~~--  273 (311)
T 3p1a_A          212 ---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----EGWQQLRQGYLPP--------EF--  273 (311)
T ss_dssp             ------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHHHHHTTTCCCH--------HH--
T ss_pred             ---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----cHHHHHhccCCCc--------cc--
Confidence               2233568999999999876 7899999999999999999997765421    1111110000000        00  


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                          .......+.+++.+||+.||++|||+.++++
T Consensus       274 --------------------~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          274 --------------------TAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             --------------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             --------------------ccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                                0123346789999999999999999999986

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.1e-39  Score=299.03  Aligned_cols=243  Identities=20%  Similarity=0.236  Sum_probs=167.0

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-----cchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-----GASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..+++.||||++.....     .....+.+|+.+++.++||||+++         
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN   86 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence            345789999999999999999999999999999999864322     123468899999999999999986         


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||+++...
T Consensus        87 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~  163 (346)
T 1ua2_A           87 ISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFG  163 (346)
T ss_dssp             CEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTTT
T ss_pred             eEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEEcCCCCEEEEecccceecc
Confidence                                        568899999999999999   9999999999999999999999999998654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                      ...    .......+|+.|+|||++.+. .++.++|||||||++|+|++|.+||...... ..+..............+.
T Consensus       164 ~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~  238 (346)
T 1ua2_A          164 SPN----RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL-DQLTRIFETLGTPTEEQWP  238 (346)
T ss_dssp             SCC----CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCTTTSS
T ss_pred             CCc----ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHcCCCChhhhh
Confidence            322    222345689999999998764 5889999999999999999999998753221 1112222111110000000


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +..-..+..........-..    .........+.+|+.+||..||.+|||+.|+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  292 (346)
T 1ua2_A          239 DMCSLPDYVTFKSFPGIPLH----HIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  292 (346)
T ss_dssp             STTSSTTCCCCCCCCCCCHH----HHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             hhccCcccccccccCCCChH----HhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence            00000000000000000000    0001233568899999999999999999999874

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2e-38  Score=286.97  Aligned_cols=214  Identities=21%  Similarity=0.207  Sum_probs=170.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++..||+|.+........+.+.+|+.+++.++||||+++                
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL   87 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence            3569999999999999999999999999999999987666667889999999999999999986                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe---CCCCceEEcccccccccccCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                           ..++.+++.||.|||+.+   |+||||||+||++   +.++.++|+|||++....... 
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~-  163 (277)
T 3f3z_A           88 CTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK-  163 (277)
T ss_dssp             CCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS-
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc-
Confidence                                 568999999999999999   9999999999999   788999999999997654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||.+.+. ++.++||||||+++|+|++|..||....... ...............        
T Consensus       164 ----~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~--------  229 (277)
T 3f3z_A          164 ----MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSE-VMLKIREGTFTFPEK--------  229 (277)
T ss_dssp             ----CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCCCCHH--------
T ss_pred             ----chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCCCCCch--------
Confidence                22345689999999998654 8999999999999999999999997432111 011111100000000        


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                          ........+.+++.+||+.||++|||+.++++
T Consensus       230 --------------------~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          230 --------------------DWLNVSPQAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             --------------------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             --------------------hhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                                00023346789999999999999999999986

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.1e-38  Score=289.09  Aligned_cols=212  Identities=19%  Similarity=0.248  Sum_probs=167.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..++..||+|++....   ......+.+|+.+++.++||||+++            
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            3567999999999999999999999999999999986432   2234678899999999999999986            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++...... 
T Consensus        87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~-  162 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSS-  162 (279)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT---CEECCCCGGGEEECTTSCEEECSCCEESCC----
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecccCChHhEEEcCCCCEEEEeccccccCCcc-
Confidence                                     458899999999999999   999999999999999999999999998644321 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                           ......|++.|+|||.+.+..++.++||||||+++|+|++|..||.....     ......        +.....
T Consensus       163 -----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~--------~~~~~~  224 (279)
T 3fdn_A          163 -----RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY-----QETYKR--------ISRVEF  224 (279)
T ss_dssp             ----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH--------HHHTCC
T ss_pred             -----cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH-----HHHHHH--------HHhCCC
Confidence                 22345689999999999999999999999999999999999999974211     111000        000000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                        ...                  ......+.+++.+||+.||.+|||+.+|++.
T Consensus       225 --~~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          225 --TFP------------------DFVTEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             --CCC------------------TTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             --CCC------------------CcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence              000                  0123356799999999999999999999974

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.7e-39  Score=305.46  Aligned_cols=246  Identities=17%  Similarity=0.186  Sum_probs=181.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|.+.+.||+|+||.||+|++..+++.||||++.... ....+.+.+|+.++++++||||+++               
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv   87 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence            457999999999999999999999999999999997543 2345678899999999999999986               


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe----CCCCceEEccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL----DNDLFAHIGDFELAR  183 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll----~~~~~~kl~Dfg~a~  183 (356)
                                                 +.++.||+.||.|||+.+   |+||||||+|||+    +.++.+||+|||+++
T Consensus        88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~  164 (396)
T 4eut_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (396)
T ss_dssp             ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred             EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence                                       458899999999999999   9999999999999    788889999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcC--------CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHH--
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLG--------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFA--  253 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~--  253 (356)
                      ......     ......||..|+|||++.+        ..++.++|||||||++|||++|+.||..............  
T Consensus       165 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~  239 (396)
T 4eut_A          165 ELEDDE-----QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKI  239 (396)
T ss_dssp             ECCCGG-----GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHH
T ss_pred             EccCCC-----ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHH
Confidence            654322     2234568999999999865        4677899999999999999999999975433222211111  


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ....+......+.........    .....  .............+.+++.+||+.||++||++.++++.|+.+.+.
T Consensus       240 ~~~~p~~~~~~~~~~~~~~~~----~~~~~--~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          240 ITGKPSGAISGVQKAENGPID----WSGDM--PVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             HHSCCTTCCEEEECSTTCCEE----EESSC--CTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             hcCCCcccchhheeccCCCcc----cCccC--CcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence            111111000000000000000    00000  000111236677889999999999999999999999999998765

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=302.54  Aligned_cols=206  Identities=19%  Similarity=0.244  Sum_probs=168.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--------cchHHHHHHHHHHhhcCCCChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------GASKSFMAECKALKNICHRNLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l--------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....        .....+.+|+.+++.++||||+++        
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            4579999999999999999999999999999999975431        123457789999999999999987        


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||++..
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~  179 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAY  179 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEEeccCHHHEEEcCCCcEEEeecccceE
Confidence                                          458899999999999999   99999999999999999999999999986


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .....     ......||+.|+|||++.+..+ +.++|||||||++|+|++|..||......                  
T Consensus       180 ~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~------------------  236 (335)
T 3dls_A          180 LERGK-----LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET------------------  236 (335)
T ss_dssp             CCTTC-----CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG------------------
T ss_pred             CCCCC-----ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH------------------
Confidence            54322     2233568999999999988877 78999999999999999999999642110                  


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       ........                    ......+.+++.+||+.||++|||+.+|++.
T Consensus       237 -~~~~~~~~--------------------~~~~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          237 -VEAAIHPP--------------------YLVSKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             -TTTCCCCS--------------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             -HhhccCCC--------------------cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             00000000                    0122357899999999999999999999884

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.6e-39  Score=308.15  Aligned_cols=225  Identities=20%  Similarity=0.157  Sum_probs=173.9

Q ss_pred             HHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH------
Q 039228           64 YESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF------  134 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l------  134 (356)
                      ..++....++|++.+.||+|+||.||+|++..+++.||+|++....   ......+.+|+.+++.++||||+++      
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3455567789999999999999999999999999999999997421   2233457899999999999999987      


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~g---ivHrDLKp~NILl~~~g~ikL~DFG~a~~  217 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMK  217 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCCHHHeeECCCCCEEEeccceeEe
Confidence                                          457889999999999999   99999999999999999999999999986


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCC----CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSE----VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      .....   ........||+.|+|||++.+..    ++.++|||||||++|||++|+.||.....     ....       
T Consensus       218 ~~~~~---~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~-----~~~~-------  282 (410)
T 3v8s_A          218 MNKEG---MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL-----VGTY-------  282 (410)
T ss_dssp             CCTTS---EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHH-------
T ss_pred             eccCC---cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh-----hhHH-------
Confidence            54322   12233567999999999998765    78999999999999999999999964211     1111       


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCC--CCChHHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQD--RMNVPNAVHD  323 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~~vl~~  323 (356)
                       ..++........+.                .......+.+|+.+||..+|.+  ||++.+|++.
T Consensus       283 -~~i~~~~~~~~~p~----------------~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H  330 (410)
T 3v8s_A          283 -SKIMNHKNSLTFPD----------------DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  330 (410)
T ss_dssp             -HHHHTHHHHCCCCT----------------TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred             -HHHHhccccccCCC----------------cccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence             11111100000000                0012335689999999999988  9999999864

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=2.9e-38  Score=292.50  Aligned_cols=215  Identities=15%  Similarity=0.170  Sum_probs=169.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc------chHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG------ASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++......      ..+.+.+|+.+++.++||||+++          
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            34699999999999999999999999999999999754321      35678999999999999999986          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC----ceEEccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL----FAHIGDFELAR  183 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~----~~kl~Dfg~a~  183 (356)
                                                 ..++.|++.||.|||+.+   |+||||||+||+++.++    .+||+|||++.
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~  167 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH  167 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence                                       568899999999999999   99999999999999887    79999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ......     ......||+.|+|||++.+..++.++||||||+++|+|++|..||......  ............ .  
T Consensus       168 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~-~--  237 (321)
T 2a2a_A          168 EIEDGV-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANITSVSYD-F--  237 (321)
T ss_dssp             ECCTTC-----CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCCC-C--
T ss_pred             ecCccc-----cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhcccc-c--
Confidence            654322     223456899999999999999999999999999999999999999642211  111000000000 0  


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                        ++..                      .......+.+++.+||+.||++|||+.++++
T Consensus       238 --~~~~----------------------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          238 --DEEF----------------------FSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             --CHHH----------------------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             --Chhh----------------------hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence              0000                      0122345789999999999999999999986

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=3e-39  Score=301.96  Aligned_cols=216  Identities=19%  Similarity=0.290  Sum_probs=161.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCC--CChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICH--RNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h--~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|.+. +++.||||++.....  ...+.+.+|+.++..++|  |||+++            
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l   86 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM   86 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECT-TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeC-CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence            467999999999999999999885 578999999975432  334678899999999987  899986            


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+.+   |+||||||+|||++ ++.+||+|||+++.......
T Consensus        87 v~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~---iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~  162 (343)
T 3dbq_A           87 VMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT  162 (343)
T ss_dssp             EECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEE-TTEEEECCCSSSCCC-----
T ss_pred             EEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCcceEEEE-CCcEEEeecccccccCcccc
Confidence                                    458899999999999999   99999999999997 67899999999986543221


Q ss_pred             CCccCCCCccccccccchhhhcC-----------CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLG-----------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                        ........||+.|+|||++.+           ..++.++|||||||++|+|++|+.||......   ...        
T Consensus       163 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~--------  229 (343)
T 3dbq_A          163 --SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ---ISK--------  229 (343)
T ss_dssp             ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH---HHH--------
T ss_pred             --cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH---HHH--------
Confidence              112334678999999999864           67889999999999999999999999643221   111        


Q ss_pred             chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          260 RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                       +..++++........                  .....+.+|+.+||+.||.+|||+.++++.
T Consensus       230 -~~~~~~~~~~~~~~~------------------~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          230 -LHAIIDPNHEIEFPD------------------IPEKDLQDVLKCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             -HHHHHCTTSCCCCCC------------------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -HHHHhcCCcccCCcc------------------cCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence             111122111111110                  112357899999999999999999999864

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=4.4e-39  Score=293.68  Aligned_cols=227  Identities=19%  Similarity=0.267  Sum_probs=174.6

Q ss_pred             hcCCCCccc-cceecCceEEEEEEE--CCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           70 ATDGFPLIN-LIGVGSFDAVYQGVF--DLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        70 ~~~~~~~~~-~lg~G~~g~Vy~~~~--~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      ..++|.+.+ .||+|+||.||+|.+  ..+++.||||++....  ....+.+.+|+.+++.++||||+++          
T Consensus        14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   93 (291)
T 1xbb_A           14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWM   93 (291)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEE
T ss_pred             cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcE
Confidence            345688888 999999999999955  5567899999997543  2235678999999999999999986          


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++......
T Consensus        94 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  170 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRAD  170 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTT
T ss_pred             EEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCC---eEcCCCCcceEEEeCCCcEEEccCCcceeeccC
Confidence                                      568899999999999999   999999999999999999999999999865433


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ... ........+++.|+|||.+.+..++.++||||||+++|+|++ |..||......  .......            .
T Consensus       171 ~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~------------~  235 (291)
T 1xbb_A          171 ENY-YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLE------------K  235 (291)
T ss_dssp             CSE-EEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHH------------T
T ss_pred             CCc-ccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHH------------c
Confidence            221 112223445788999999988889999999999999999999 99999743211  1111111            1


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      ......                  +..++..+.+++.+||+.||.+|||+.+|++.|+.+.....
T Consensus       236 ~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~  282 (291)
T 1xbb_A          236 GERMGC------------------PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV  282 (291)
T ss_dssp             TCCCCC------------------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC------------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence            000000                  01334467899999999999999999999999999987653

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1.1e-38  Score=306.30  Aligned_cols=217  Identities=19%  Similarity=0.221  Sum_probs=162.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--------cchHHHHHHHHHHhhcCCCChHHH-------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------GASKSFMAECKALKNICHRNLVRF-------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l-------  134 (356)
                      ..++|.+.+.||+|+||.||+|.+..+++.||||++.....        .....+.+|+.+|++++||||+++       
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~  212 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE  212 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence            35789999999999999999999999999999999975321        122357899999999999999987       


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC---CceEEcccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND---LFAHIGDFELA  182 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~---~~~kl~Dfg~a  182 (356)
                                                   ..++.|++.||.|||+.+   |+||||||+|||++.+   +.+||+|||++
T Consensus       213 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivHrDlkp~NIll~~~~~~~~~kl~DFG~a  289 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHS  289 (419)
T ss_dssp             EEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSSSCCEEECCSSTT
T ss_pred             ceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCCCcceEEEeecccc
Confidence                                         568899999999999999   9999999999999754   45999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +.....     .......||+.|+|||++.+   ..++.++|||||||++|+|++|..||....... .+..........
T Consensus       290 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~-~~~~~i~~~~~~  363 (419)
T 3i6u_A          290 KILGET-----SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITSGKYN  363 (419)
T ss_dssp             TSCC----------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSC-CHHHHHHTTCCC
T ss_pred             eecCCC-----ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchH-HHHHHHhcCCCC
Confidence            865432     22234678999999999853   567889999999999999999999997533222 222221111100


Q ss_pred             chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....                           ........+.+++.+||+.||.+|||+.++++
T Consensus       364 ~~~~---------------------------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          364 FIPE---------------------------VWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             CCHH---------------------------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCch---------------------------hhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            0000                           00123346789999999999999999999986

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1e-38  Score=297.16  Aligned_cols=226  Identities=20%  Similarity=0.292  Sum_probs=175.1

Q ss_pred             cCCCCccccceecCceEEEEEEEC-------CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH-------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD-------LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF-------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l-------  134 (356)
                      .++|++.+.||+|+||.||+|.+.       .++..||+|++..... ...+.+.+|+.+++++ +||||+++       
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            467999999999999999999985       3567899999975432 3456788999999999 89999976       


Q ss_pred             ----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe
Q 039228          135 ----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       135 ----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll  168 (356)
                                                                    +.++.||+.||.|||+.+   |+||||||+||++
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll  190 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK---CIHRDLAARNVLV  190 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEE
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCccceEEE
Confidence                                                          236789999999999999   9999999999999


Q ss_pred             CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCc
Q 039228          169 DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDL  247 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~  247 (356)
                      +.++.+||+|||++........  ........+++.|+|||++.+..++.++||||||+++|+|++ |..||......  
T Consensus       191 ~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--  266 (334)
T 2pvf_A          191 TENNVMKIADFGLARDINNIDY--YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--  266 (334)
T ss_dssp             CTTCCEEECCCTTCEECTTTSS--EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--
T ss_pred             cCCCCEEEcccccccccccccc--ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH--
Confidence            9999999999999986543221  122233456788999999988889999999999999999999 99999643211  


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .+......            ......                  ...++..+.+++.+||+.||.+|||+.+|++.|+.+
T Consensus       267 ~~~~~~~~------------~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l  316 (334)
T 2pvf_A          267 ELFKLLKE------------GHRMDK------------------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  316 (334)
T ss_dssp             HHHHHHHH------------TCCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HHHHHHhc------------CCCCCC------------------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence            11111111            000000                  012344678999999999999999999999999999


Q ss_pred             hhhhcc
Q 039228          328 NNILLP  333 (356)
Q Consensus       328 ~~~~~~  333 (356)
                      ......
T Consensus       317 ~~~~~~  322 (334)
T 2pvf_A          317 LTLTTN  322 (334)
T ss_dssp             HHHHC-
T ss_pred             Hhcccc
Confidence            876644

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.3e-38  Score=288.51  Aligned_cols=215  Identities=23%  Similarity=0.347  Sum_probs=166.9

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+.  ++.||||++...  ...+.+.+|+.++++++||||+++               
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~   94 (278)
T 1byg_A           19 NMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT   94 (278)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred             ChhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEE
Confidence            3467999999999999999999985  789999998743  245778999999999999999976               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.+++.||.|||+.+   |+||||||+||+++.++.++|+|||++...... 
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~-  170 (278)
T 1byg_A           95 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-  170 (278)
T ss_dssp             CCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC--------
T ss_pred             ecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCcceEEEeCCCcEEEeecccccccccc-
Confidence                                     457889999999999999   999999999999999999999999999754322 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                            .....++..|+|||.+.+..++.++||||||+++|+|++ |..||......  ........            .
T Consensus       171 ------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~------------~  230 (278)
T 1byg_A          171 ------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEK------------G  230 (278)
T ss_dssp             -----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTT------------T
T ss_pred             ------ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhc------------C
Confidence                  122356788999999998899999999999999999998 99999743211  11111100            0


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .....                  ...++..+.+++.+||+.||.+|||+.++++.|+.+...
T Consensus       231 ~~~~~------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          231 YKMDA------------------PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             CCCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCC------------------cccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence            00000                  012344678999999999999999999999999998754

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=6.7e-39  Score=297.89  Aligned_cols=239  Identities=23%  Similarity=0.260  Sum_probs=162.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||||++.....  ...+.+.+|+.++++++||||+++             
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  111 (329)
T 3gbz_A           32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI  111 (329)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred             chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence            45689999999999999999999999999999999975432  224567899999999999999986             


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe-----CCCCceEEcccccccccc
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL-----DNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll-----~~~~~~kl~Dfg~a~~~~  186 (356)
                                             ..++.||+.||.|||+.+   |+||||||+|||+     +..+.+||+|||++....
T Consensus       112 ~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~  188 (329)
T 3gbz_A          112 FEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG  188 (329)
T ss_dssp             EECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred             EecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence                                   458899999999999999   9999999999999     455669999999998654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh-CCC-chHH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA-FPN-RVMD  263 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~-~~~-~~~~  263 (356)
                      ...    .......+|+.|+|||++.+. .++.++|||||||++|+|++|..||....... .+....... .+. ....
T Consensus       189 ~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~  263 (329)
T 3gbz_A          189 IPI----RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID-QLFKIFEVLGLPDDTTWP  263 (329)
T ss_dssp             ---------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTST
T ss_pred             Ccc----cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH-HHHHHHHHhCCCchhhhh
Confidence            322    222345679999999999874 48999999999999999999999997532211 111111111 111 0000


Q ss_pred             Hhh--hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVN--LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      -..  +.+......   .........   ........+.+|+.+||+.||.+|||+.++++
T Consensus       264 ~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          264 GVTALPDWKQSFPK---FRGKTLKRV---LGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             TGGGSTTCCTTCCC---CCCCCHHHH---HGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhhhh---hccccHhhh---cccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence            000  000000000   000000000   00013346789999999999999999999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=4.2e-38  Score=306.62  Aligned_cols=231  Identities=19%  Similarity=0.204  Sum_probs=178.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++.....  ...+..|+.+++.++|++.+..                
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            5789999999999999999999999999999999875432  2457889999999988654422                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe---CCCCceEEcccccccccccCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                            +.++.||+.||.|||+.+   ||||||||+|||+   +.++.+||+|||+++......
T Consensus        84 ~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~g---IvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~  160 (483)
T 3sv0_A           84 LLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTS  160 (483)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTT
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EeecccCcceEEEecCCCCCeEEEEeCCcceeccCCc
Confidence                                  568899999999999999   9999999999999   688999999999998765433


Q ss_pred             CCC---ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          190 NPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       190 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...   ........||..|+|||++.+..++.++|||||||++|||++|+.||........  .....        .+..
T Consensus       161 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~--~~~~~--------~i~~  230 (483)
T 3sv0_A          161 THQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTK--KQKYE--------KISE  230 (483)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSH--HHHHH--------HHHH
T ss_pred             cccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhH--HHHHH--------HHhh
Confidence            211   1223357789999999999999999999999999999999999999976433221  11110        1111


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ..+.....               .....++..+.+++..||+.||++||++.+|++.|+.+....
T Consensus       231 ~~~~~~~~---------------~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~  280 (483)
T 3sv0_A          231 KKVATSIE---------------ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE  280 (483)
T ss_dssp             HHHHSCHH---------------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             ccccccHH---------------HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence            11100000               000123446889999999999999999999999999997643

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.1e-38  Score=301.45  Aligned_cols=230  Identities=20%  Similarity=0.213  Sum_probs=169.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||||++....  ....+.+.+|+.+++.++||||+++              
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            568999999999999999999999999999999997542  2334678899999999999999976              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++.....
T Consensus       121 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~  197 (371)
T 4exu_A          121 DFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHADAE  197 (371)
T ss_dssp             CCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECSTTCC------
T ss_pred             eEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCcCHHHeEECCCCCEEEEecCcccccccC
Confidence                                      458899999999999999   999999999999999999999999999754322


Q ss_pred             CCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC-c-----
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN-R-----  260 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~-~-----  260 (356)
                             .....||+.|+|||++.+ ..++.++|||||||++|+|++|+.||......+ .+........ +. .     
T Consensus       198 -------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~  269 (371)
T 4exu_A          198 -------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQKL  269 (371)
T ss_dssp             ---------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCHHHHTTC
T ss_pred             -------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCcHHHHHHh
Confidence                   233567999999999987 678999999999999999999999997532111 1111111111 10 0     


Q ss_pred             ----hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          261 ----VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       261 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                          ....... +.....           .............+.+|+.+||+.||++|||+.++++.
T Consensus       270 ~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          270 NDKAAKSYIQS-LPQTPR-----------KDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             SCHHHHHHHHH-SCCCCC-----------CCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             hhhhhhhhhhc-cCCCcc-----------hhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence                0000000 000000           00000011234567899999999999999999999863

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=3.1e-38  Score=299.82  Aligned_cols=241  Identities=19%  Similarity=0.191  Sum_probs=173.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC--------CCChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC--------HRNLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l--------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++... ....+.+.+|+.+++.++        |+||+++        
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            46899999999999999999999999999999999743 334567889999999986        6678765        


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCC-------
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDL-------  172 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~-------  172 (356)
                                                        ..++.||+.||.|||++ +   |+||||||+|||++.++       
T Consensus       115 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~g---ivHrDikp~NIll~~~~~~~~~~~  191 (397)
T 1wak_A          115 VNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCR---IIHTDIKPENILLSVNEQYIRRLA  191 (397)
T ss_dssp             TTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECCCCSGGGEEECCCHHHHHHHH
T ss_pred             CCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHeeEeccchhhhhhh
Confidence                                              45889999999999998 8   99999999999999775       


Q ss_pred             ------------------------------------------ceEEcccccccccccCCCCCccCCCCccccccccchhh
Q 039228          173 ------------------------------------------FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY  210 (356)
Q Consensus       173 ------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~  210 (356)
                                                                .+||+|||++......       .....||+.|+|||+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-------~~~~~gt~~y~aPE~  264 (397)
T 1wak_A          192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-------FTEDIQTRQYRSLEV  264 (397)
T ss_dssp             HHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-------SCSCCSCGGGCCHHH
T ss_pred             hhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-------CccCCCCCcccCChh
Confidence                                                      7999999999865422       233568999999999


Q ss_pred             hcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCcc-----HHHHHHHhCCCchHHHhhhhhccccccccccccchhh
Q 039228          211 DLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN-----LHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLR  285 (356)
Q Consensus       211 ~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  285 (356)
                      +.+..++.++|||||||++|||++|+.||.........     +.......-......+..................+..
T Consensus       265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  344 (397)
T 1wak_A          265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK  344 (397)
T ss_dssp             HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence            99999999999999999999999999999754433211     1111111111010001000000000000000000000


Q ss_pred             ----------hhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          286 ----------KTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       286 ----------~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                .............+.+|+.+||+.||++|||+.+|++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence                      0001122466778899999999999999999999985

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.6e-38  Score=291.27  Aligned_cols=227  Identities=20%  Similarity=0.215  Sum_probs=166.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.....   ...+.+.+|+.++++++||||+++            
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  111 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV  111 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence            35789999999999999999999999999999999875432   224678899999999999999986            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......
T Consensus       112 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  188 (309)
T 2h34_A          112 DMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAG---ATHRDVKPENILVSADDFAYLVDFGIASATTDEK  188 (309)
T ss_dssp             EEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSCCC--------
T ss_pred             EEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCc---CCcCCCChHHEEEcCCCCEEEecCccCccccccc
Confidence                                     568899999999999999   9999999999999999999999999997654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                         ........|++.|+|||.+.+..++.++||||||+++|+|++|+.||......  .+........+. ..     ..
T Consensus       189 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~-~~-----~~  257 (309)
T 2h34_A          189 ---LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIPR-PS-----TV  257 (309)
T ss_dssp             -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCCC-GG-----GT
T ss_pred             ---cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCCC-cc-----cc
Confidence               12223456899999999999999999999999999999999999999742211  111111100000 00     00


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-ChHHHHHHHHHhhhhhc
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-NVPNAVHDLQSVNNILL  332 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-s~~~vl~~L~~i~~~~~  332 (356)
                                            ....+..+.+++.+||+.||++|| ++.++++.|+.+.....
T Consensus       258 ----------------------~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~  299 (309)
T 2h34_A          258 ----------------------RPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD  299 (309)
T ss_dssp             ----------------------STTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred             ----------------------CCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence                                  012333578999999999999999 99999999998876653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=299.73  Aligned_cols=209  Identities=18%  Similarity=0.175  Sum_probs=161.9

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------------
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------------  134 (356)
                      .+.||+|+||.||+|.+..+++.||+|++........+.+.+|+.++++++||||+++                      
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            5689999999999999999999999999987655566789999999999999999987                      


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe--CCCCceEEcccccccccccCCCCCccCC
Q 039228          135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL--DNDLFAHIGDFELARFRQEVSNPTQSSS  196 (356)
Q Consensus       135 ----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll--~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  196 (356)
                                      +.++.||+.||.|||+.+   |+||||||+|||+  +.++.+||+|||+++......     ..
T Consensus       174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~-----~~  245 (373)
T 2x4f_A          174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQMY---ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE-----KL  245 (373)
T ss_dssp             HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC-----BC
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc-----cc
Confidence                            457889999999999999   9999999999999  677899999999998654322     12


Q ss_pred             CCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       197 ~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ....||+.|+|||++.+..++.++|||||||++|||++|..||....... .+...            +........   
T Consensus       246 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~~~i------------~~~~~~~~~---  309 (373)
T 2x4f_A          246 KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE-TLNNI------------LACRWDLED---  309 (373)
T ss_dssp             CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHH------------HHTCCCSCS---
T ss_pred             ccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHH------------HhccCCCCh---
Confidence            23568999999999998899999999999999999999999997432110 11111            111000000   


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                   .........+.+|+.+||+.||.+|||+.++++
T Consensus       310 -------------~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          310 -------------EEFQDISEEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             -------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -------------hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence                         000123346789999999999999999999987

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=7.7e-39  Score=297.57  Aligned_cols=239  Identities=20%  Similarity=0.226  Sum_probs=168.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....  ...+.+.+|+.+++.++||||+++              
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence            4679999999999999999999999999999999865432  234567899999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......  
T Consensus       104 e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~---ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--  178 (331)
T 4aaa_A          104 EFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG--  178 (331)
T ss_dssp             ECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCTTC---------
T ss_pred             ecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCC---EEccCcChheEEEcCCCcEEEEeCCCceeecCCc--
Confidence                                   458899999999999999   9999999999999999999999999997654322  


Q ss_pred             CccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCchHHHhhhh
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNRVMDIVNLV  268 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  268 (356)
                        .......||..|+|||++.+. .++.++|||||||++|+|++|+.||....... .+........  ...........
T Consensus       179 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  255 (331)
T 4aaa_A          179 --EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLGNLIPRHQELFNKN  255 (331)
T ss_dssp             -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHHHHHC
T ss_pred             --cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhhhHhhhc
Confidence              122335679999999999875 68999999999999999999999997533211 1111111111  11111111110


Q ss_pred             -hccccccccccccchhh-hhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 -LLNDNKVLAGTNSNMLR-KTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 -l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       ......     .+.... .............+.+|+.+||+.||++|||+.++++
T Consensus       256 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          256 PVFAGVR-----LPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             GGGTTCC-----CCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             ccccccc-----CccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence             000000     000000 0000011134557889999999999999999999986

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=3.9e-38  Score=302.43  Aligned_cols=234  Identities=19%  Similarity=0.160  Sum_probs=166.9

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      .+|++.+.||+|+||.||+|++..+++.||||++.....    ...+|+.+|+.++||||+++                 
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            469999999999999999999999999999999864422    23469999999999999975                 


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEcccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARF  184 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~~  184 (356)
                                                   ..++.||+.||.|||+.+   |+||||||+|||++.+ +.+||+|||+++.
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~NILl~~~~~~~kl~DFG~a~~  206 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ  206 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChhhEEEeCCCCeEEeccchhhhh
Confidence                                         346789999999999999   9999999999999954 6789999999986


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .....     ......||+.|+|||++.+. .++.++|||||||++|||++|+.||...... ..+.......-......
T Consensus       207 ~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~-~~l~~i~~~lg~p~~~~  280 (420)
T 1j1b_A          207 LVRGE-----PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKVLGTPTREQ  280 (420)
T ss_dssp             CCTTC-----CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCSCCHHH
T ss_pred             cccCC-----CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHH
Confidence            54322     12335789999999998765 7899999999999999999999999753221 12222222222111111


Q ss_pred             Hhhhhhccccccccccccchhhhhchh-hHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMN-SRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +.. . ...+..  -..+......+.. ........+.+|+.+||..||.+|||+.++++
T Consensus       281 ~~~-~-~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          281 IRE-M-NPNYTE--FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             HHH-H-CSCCCC--CCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHh-h-Chhhhh--hccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence            110 0 000000  0000000000000 00122346789999999999999999999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=7.4e-39  Score=288.26  Aligned_cols=216  Identities=19%  Similarity=0.262  Sum_probs=169.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|++.  ++.||||++....  ....+.+.+|+.++++++||||+++              
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   86 (271)
T 3kmu_A            9 FKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL   86 (271)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred             HHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence            457999999999999999999986  7899999997543  2344678999999999999999986              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.|++.||.|||+.+ .+|+||||||+||+++.++.++|+|||++...  
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~--  163 (271)
T 3kmu_A           87 ITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLE-PLIPRHALNSRSVMIDEDMTARISMADVKFSF--  163 (271)
T ss_dssp             EEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSS-SCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT--
T ss_pred             eecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCC-CceecCCCccceEEEcCCcceeEEeccceeee--
Confidence                                       568899999999999864 45999999999999999999999999887532  


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCC---ccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVST---NGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                             ......+|+.|+|||.+.+..++.   ++||||||+++|+|++|+.||.......     ...        ..
T Consensus       164 -------~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~~--------~~  223 (271)
T 3kmu_A          164 -------QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNME-----IGM--------KV  223 (271)
T ss_dssp             -------SCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHH-----HHH--------HH
T ss_pred             -------cccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHH-----HHH--------HH
Confidence                   122356789999999998766554   7999999999999999999997432111     000        01


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      ..........                  ..++..+.+++.+||+.||++|||+.++++.|+++.+
T Consensus       224 ~~~~~~~~~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          224 ALEGLRPTIP------------------PGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             HHSCCCCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             HhcCCCCCCC------------------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            1110000000                  1233467899999999999999999999999998865

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=6.5e-39  Score=316.86  Aligned_cols=227  Identities=23%  Similarity=0.359  Sum_probs=179.1

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      +....++|++.+.||+|+||.||+|.+..+ ..||||+++... ...+.+.+|+.+|++++||||+++            
T Consensus       262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv  339 (535)
T 2h8h_A          262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIV  339 (535)
T ss_dssp             SBCCGGGEEEEEEEEECSSEEEEEEEETTT-EEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEE
T ss_pred             eecchhhhhhheecccCCCeEEEEEEECCC-ceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEe
Confidence            334556789999999999999999999865 779999997543 335789999999999999999986            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.....
T Consensus       340 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  416 (535)
T 2h8h_A          340 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDN  416 (535)
T ss_dssp             ECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH
T ss_pred             eehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeCCCCCHhhEEEcCCCcEEEcccccceecCCC
Confidence                                      458899999999999999   999999999999999999999999999865321


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .   ........++..|+|||++.+..++.++|||||||++|||++ |..||......  .....+            ..
T Consensus       417 ~---~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~--~~~~~i------------~~  479 (535)
T 2h8h_A          417 E---YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQV------------ER  479 (535)
T ss_dssp             H---HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH--HHHHHH------------HT
T ss_pred             c---eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHH------------Hc
Confidence            1   112233456788999999998899999999999999999999 99999743211  111111            11


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      .....                  ....++..+.+|+.+||+.||++|||+.+|++.|+.+.....+
T Consensus       480 ~~~~~------------------~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~  527 (535)
T 2h8h_A          480 GYRMP------------------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  527 (535)
T ss_dssp             TCCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSC
T ss_pred             CCCCC------------------CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCc
Confidence            00000                  0113445688999999999999999999999999988766543

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.5e-38  Score=298.40  Aligned_cols=208  Identities=20%  Similarity=0.213  Sum_probs=165.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhc-CCCChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNI-CHRNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l-----------  134 (356)
                      ..++|++.+.||+|+||.||+|++..+++.||||+++...   ....+.+..|..++..+ +||||+++           
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            3578999999999999999999999999999999997542   23456788999999987 79999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.||+.||.|||+.+   |+||||||+|||++.+|.+||+|||+++.....
T Consensus        98 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  174 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWD  174 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---EEeccCCHHHEEEcCCCcEEEEeCCcccccccC
Confidence                                      458899999999999999   999999999999999999999999999753221


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .    .......||+.|+|||++.+..++.++|||||||++|||++|+.||.....     .....        .+....
T Consensus       175 ~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~~--------~i~~~~  237 (353)
T 2i0e_A          175 G----VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DELFQ--------SIMEHN  237 (353)
T ss_dssp             T----CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHH--------HHHHCC
T ss_pred             C----cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH-----HHHHH--------HHHhCC
Confidence            1    223456789999999999999999999999999999999999999964211     11111        111110


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      +.  .+                  ......+.+++.+||..||.+||++
T Consensus       238 ~~--~p------------------~~~s~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          238 VA--YP------------------KSMSKEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             CC--CC------------------TTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred             CC--CC------------------CCCCHHHHHHHHHHhhcCHHHcCCC
Confidence            00  00                  0223357899999999999999964

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.4e-38  Score=297.13  Aligned_cols=244  Identities=19%  Similarity=0.157  Sum_probs=163.9

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .....++|++.+.||+|+||.||+|.+..+++.||||++.... ........++..+..++||||+++            
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~   96 (360)
T 3e3p_A           18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR   96 (360)
T ss_dssp             HHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred             chhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence            3455788999999999999999999999999999999986542 333566788888999999999975            


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHh--hcCCCcEEecCCCCCCeEeCC-CCceEE
Q 039228          135 -----------------------------------ISIAIDVASALDYLH--HHCQELILHCDPKPSNVLLDN-DLFAHI  176 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH--~~~~~~iiH~Dlkp~NIll~~-~~~~kl  176 (356)
                                                         ..++.+++.||.|||  +.+   |+||||||+|||++. ++.+||
T Consensus        97 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~---ivH~Dlkp~NIll~~~~~~~kl  173 (360)
T 3e3p_A           97 RDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVN---VCHRDIKPHNVLVNEADGTLKL  173 (360)
T ss_dssp             TCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTC---CBCSCCCGGGEEEETTTTEEEE
T ss_pred             cceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCC---eecCcCCHHHEEEeCCCCcEEE
Confidence                                               347889999999999  888   999999999999996 899999


Q ss_pred             cccccccccccCCCCCccCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH
Q 039228          177 GDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       177 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      +|||++.......     ......||+.|+|||++.+.. ++.++|||||||++|+|++|+.||...... ..+......
T Consensus       174 ~Dfg~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~-~~~~~~~~~  247 (360)
T 3e3p_A          174 CDFGSAKKLSPSE-----PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA-GQLHEIVRV  247 (360)
T ss_dssp             CCCTTCBCCCTTS-----CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHH
T ss_pred             eeCCCceecCCCC-----CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH-HHHHHHHHH
Confidence            9999998654322     223456799999999987654 899999999999999999999999753221 122222222


Q ss_pred             hCCC--chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          256 AFPN--RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       256 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....  .....+++.......  ......-...............+.+|+.+||+.||.+|||+.++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          248 LGCPSREVLRKLNPSHTDVDL--YNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             HCCCCHHHHHHHCTTCCCGGG--GCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             cCCCCHHHHHhcccchhhccc--cccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence            2111  111111111000000  0000000000001111124557899999999999999999999986

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.2e-38  Score=295.09  Aligned_cols=213  Identities=17%  Similarity=0.184  Sum_probs=171.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....   ....+.+.+|+.+++.++||||+++             
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            467999999999999999999999999999999987542   2345678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++....... 
T Consensus       120 ~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-  195 (335)
T 2owb_A          120 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG-  195 (335)
T ss_dssp             ECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECCSTT-
T ss_pred             EecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CEecCCCchhEEEcCCCCEEEeeccCceecccCc-
Confidence                                    458899999999999999   9999999999999999999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .......||..|+|||++.+..++.++||||||+++|+|++|+.||.....     .....        .+......
T Consensus       196 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~--------~~~~~~~~  259 (335)
T 2owb_A          196 ---ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYL--------RIKKNEYS  259 (335)
T ss_dssp             ---CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHH--------HHHHTCCC
T ss_pred             ---ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH-----HHHHH--------HHhcCCCC
Confidence               122345689999999999999999999999999999999999999964221     11100        00000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                        ..                  ......+.+++.+||+.||++|||+.++++.
T Consensus       260 --~~------------------~~~~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          260 --IP------------------KHINPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             --CC------------------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             --CC------------------ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence              00                  0122356789999999999999999999874

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=5.3e-39  Score=310.81  Aligned_cols=213  Identities=20%  Similarity=0.256  Sum_probs=160.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++...   .......+.+|+.+++.++||||+++            
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  225 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF  225 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence            346799999999999999999999999999999999753   23334567889999999999999986            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 -------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                               ..++.||+.||.|||+ .+   |+||||||+|||++.++.+||+|||+++.....
T Consensus       226 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~g---iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~  302 (446)
T 4ejn_A          226 VMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKN---VVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD  302 (446)
T ss_dssp             EECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTC---CCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred             EEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCC---EEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence                                     4578899999999998 88   999999999999999999999999999753322


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .    .......||+.|+|||++.+..++.++|||||||++|||++|+.||.....     ...            ....
T Consensus       303 ~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~------------~~~i  361 (446)
T 4ejn_A          303 G----ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKL------------FELI  361 (446)
T ss_dssp             --------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH------------HHHH
T ss_pred             C----cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHH------------HHHH
Confidence            1    223446789999999999999999999999999999999999999964221     111            1111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                      .......                +......+.+|+.+||+.||.+||     ++.++++
T Consensus       362 ~~~~~~~----------------p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          362 LMEEIRF----------------PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             HHCCCCC----------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             HhCCCCC----------------CccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            1000000                002233578999999999999999     9999875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=6.8e-39  Score=304.82  Aligned_cols=215  Identities=19%  Similarity=0.285  Sum_probs=162.2

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcC--CCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNIC--HRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l-------------  134 (356)
                      .+|.+.+.||+|+||.||+|.+.. ++.||||++....  ....+.+.+|+.+|+.++  ||||+++             
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv  134 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV  134 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence            459999999999999999999875 7999999997543  234567899999999997  4999976             


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.||+.||.|||+.+   |+||||||+|||++ ++.+||+|||+++....... 
T Consensus       135 ~E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~---ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~-  209 (390)
T 2zmd_A          135 MECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT-  209 (390)
T ss_dssp             EECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTT---CCCCCCCGGGEEES-SSCEEECCCSSSCCC------
T ss_pred             EecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCHHHEEEE-CCeEEEEecCccccccCCCc-
Confidence                                   457899999999999999   99999999999996 58899999999986643221 


Q ss_pred             CccCCCCccccccccchhhhcC-----------CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLG-----------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                       ........||+.|+|||++.+           ..++.++|||||||++|||++|+.||......   ...         
T Consensus       210 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~---~~~---------  276 (390)
T 2zmd_A          210 -SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ---ISK---------  276 (390)
T ss_dssp             -----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHH---------
T ss_pred             -cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH---HHH---------
Confidence             112334678999999999875           36889999999999999999999999643211   111         


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +..+++.......+.                  .....+.+|+.+||+.||.+|||+.+|++.
T Consensus       277 ~~~~~~~~~~~~~~~------------------~~~~~~~~li~~~L~~dP~~Rps~~ell~h  321 (390)
T 2zmd_A          277 LHAIIDPNHEIEFPD------------------IPEKDLQDVLKCCLKRDPKQRISIPELLAH  321 (390)
T ss_dssp             HHHHHCTTSCCCCCC------------------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHHHhCccccCCCCc------------------cchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence            111222111111110                  112357899999999999999999999864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1.4e-38  Score=297.91  Aligned_cols=237  Identities=22%  Similarity=0.215  Sum_probs=170.6

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..++|.+.+.||+|+||.||+|.+..+++.||||++.... ......+.+|+.+++.++||||+++              
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence            3578999999999999999999999999999999996433 2334578899999999999999975              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++......
T Consensus        89 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~---ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~  165 (353)
T 2b9h_A           89 VYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARIIDES  165 (353)
T ss_dssp             EEEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred             EEEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEcCCCcEEEEecccccccccc
Confidence                                      458899999999999999   999999999999999999999999999876432


Q ss_pred             CCCC------ccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC-
Q 039228          189 SNPT------QSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN-  259 (356)
Q Consensus       189 ~~~~------~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~-  259 (356)
                      ....      ........||+.|+|||++.+ ..++.++|||||||++|+|++|..||....... .+........ +. 
T Consensus       166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~  244 (353)
T 2b9h_A          166 AADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH-QLLLIFGIIGTPHS  244 (353)
T ss_dssp             --------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCS
T ss_pred             cccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCch
Confidence            2111      111234578999999998764 678999999999999999999999997532111 1111111100 00 


Q ss_pred             ----------chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 ----------RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                ...+.+... ...       .......    ........+.+++.+||+.||.+|||+.++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~----~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          245 DNDLRCIESPRAREYIKSL-PMY-------PAAPLEK----MFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             TTTTTTCCCHHHHHHHHTS-CCC-------CCCCHHH----HSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hccccccccchhhHHhhcc-cCC-------CCcchhh----hcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                      000010000 000       0000000    00133456789999999999999999999987

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.3e-38  Score=306.57  Aligned_cols=226  Identities=16%  Similarity=0.130  Sum_probs=173.3

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-----
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-----  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-----  134 (356)
                      .+.++....++|++.+.||+|+||.||+|++..+++.||+|++....   ......+..|+.++..++||||+++     
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            34556667789999999999999999999999999999999997431   1223448889999999999999986     


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                                       ..++.||+.||.|||+.+   ||||||||+|||++.++.+||+|||+
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILl~~~g~vkL~DFGl  221 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGS  221 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC---eEecccCHHHeeEcCCCCEEEcchhh
Confidence                                             448889999999999999   99999999999999999999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      ++......   ........||+.|+|||++.     ...++.++|||||||++|||++|+.||.....     ....   
T Consensus       222 a~~~~~~~---~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~-----~~~~---  290 (437)
T 4aw2_A          222 CLKLMEDG---TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL-----VETY---  290 (437)
T ss_dssp             CEECCTTS---CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHH---
T ss_pred             hhhcccCC---CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh-----hHHH---
Confidence            97654322   12233467999999999987     56789999999999999999999999974221     1111   


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCC--CCChHHHHH
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQD--RMNVPNAVH  322 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~--RPs~~~vl~  322 (356)
                           ..++........+.               ........+.+|+.+||..+|++  ||+++++++
T Consensus       291 -----~~i~~~~~~~~~p~---------------~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          291 -----GKIMNHKERFQFPT---------------QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             -----HHHHTHHHHCCCCS---------------SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             -----HhhhhccccccCCc---------------ccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence                 01111000000000               00012335688999999988888  999999876

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.9e-38  Score=293.51  Aligned_cols=212  Identities=20%  Similarity=0.211  Sum_probs=157.9

Q ss_pred             cCCCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccC----ccchHHHHHHHHHHhhcCCCChHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQC----QGASKSFMAECKALKNICHRNLVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l---------  134 (356)
                      .++|++.+.||+|+||.||+|+..   .+++.||+|+++...    ......+.+|+.+++.++||||+++         
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            467999999999999999999985   578999999997542    2234567889999999999999986         


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++...
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~---ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCKESI  172 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCTTTEEECTTSCEEECCCSCC----
T ss_pred             EEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEcccCCHHHeEECCCCcEEEEeCCcccccc
Confidence                                        457889999999999999   9999999999999999999999999997543


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...    .......||+.|+|||++.+..++.++||||||+++|+|++|..||.....     ....        ..+..
T Consensus       173 ~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~~~--------~~i~~  235 (327)
T 3a62_A          173 HDG----TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR-----KKTI--------DKILK  235 (327)
T ss_dssp             ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHH--------HHHHH
T ss_pred             cCC----ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH-----HHHH--------HHHHh
Confidence            221    122346789999999999999999999999999999999999999974321     1110        01111


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                      ....  ..                  ......+.+++.+||+.||.+||     ++.++++
T Consensus       236 ~~~~--~p------------------~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          236 CKLN--LP------------------PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             TCCC--CC------------------TTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             CCCC--CC------------------CCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence            1000  00                  02233578999999999999999     6667765

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=2.8e-38  Score=291.48  Aligned_cols=235  Identities=19%  Similarity=0.207  Sum_probs=166.1

Q ss_pred             cCCCCcc-ccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH--------------
Q 039228           71 TDGFPLI-NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l--------------  134 (356)
                      .+.|.+. +.||+|+||.||+|.+..+++.||||++..........+.+|+.++.++ +||||+++              
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   90 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF   90 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence            4568885 7899999999999999989999999999876656677899999999984 79999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc---eEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF---AHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~---~kl~Dfg~a~~~~~~  188 (356)
                                             ..++.||+.||.|||+.+   |+||||||+||+++.++.   +||+|||++......
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~  167 (316)
T 2ac3_A           91 EKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN  167 (316)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred             EcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence                                   458899999999999999   999999999999998776   999999999765322


Q ss_pred             CCC---CccCCCCccccccccchhhhcC-----CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          189 SNP---TQSSSNGVRRTIGYTALDYDLG-----SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       189 ~~~---~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ...   .........||+.|+|||++.+     ..++.++|||||||++|+|++|+.||......+......  ...+..
T Consensus       168 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~--~~~~~~  245 (316)
T 2ac3_A          168 GDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRG--EACPAC  245 (316)
T ss_dssp             --------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC------CCHHH
T ss_pred             CccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccccccc--ccchhH
Confidence            110   1112234568999999999875     457899999999999999999999997654332111000  000000


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...+...........     +   .    .........+.+++.+||+.||.+|||+.++++
T Consensus       246 ~~~~~~~i~~~~~~~-----~---~----~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          246 QNMLFESIQEGKYEF-----P---D----KDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHHHCCCCC-----C---H----HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHhccCccc-----C---c----hhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            001111111110000     0   0    000123346789999999999999999999987

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=317.73  Aligned_cols=225  Identities=21%  Similarity=0.308  Sum_probs=171.7

Q ss_pred             CCCccc-cceecCceEEEEEEEC--CCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           73 GFPLIN-LIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        73 ~~~~~~-~lg~G~~g~Vy~~~~~--~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++.+.. .||+|+||.||+|.+.  .++..||||+++... ....+.+.+|+.+|++++||||+++              
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E  415 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVME  415 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEE
Confidence            344444 7999999999999875  346789999997543 3356789999999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++........
T Consensus       416 ~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~  492 (613)
T 2ozo_A          416 MAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSY  492 (613)
T ss_dssp             CCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----
T ss_pred             eCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---EEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCce
Confidence                                   568899999999999999   999999999999999999999999999866432211


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                       ........+++.|+|||++.+..++.++|||||||++|||++ |+.||......  .....+..            ...
T Consensus       493 -~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~------------~~~  557 (613)
T 2ozo_A          493 -YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQ------------GKR  557 (613)
T ss_dssp             ----------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHT------------TCC
T ss_pred             -eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHc------------CCC
Confidence             112223345688999999998999999999999999999998 99999753221  11111111            100


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      ...                  +..++..+.+|+..||+.||++||++.+|++.|+.+...+..
T Consensus       558 ~~~------------------p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~  602 (613)
T 2ozo_A          558 MEC------------------PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS  602 (613)
T ss_dssp             CCC------------------CTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred             CCC------------------CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence            000                  113455788999999999999999999999999999877643

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=5.1e-38  Score=302.44  Aligned_cols=161  Identities=23%  Similarity=0.328  Sum_probs=139.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc------CCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI------CHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l----------  134 (356)
                      ..+|++.+.||+|+||.||+|.+..+++.||||++... ......+..|+.+++.+      +|+||+++          
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            46799999999999999999999999999999999743 23345677888888877      56688875          


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc--eEEcccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF--AHIGDFELARF  184 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~--~kl~Dfg~a~~  184 (356)
                                                  ..++.||+.||.|||+.+   |+||||||+|||++.++.  +||+|||++..
T Consensus       175 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~  251 (429)
T 3kvw_A          175 CMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGSSCY  251 (429)
T ss_dssp             EEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHT---EECSCCSGGGEEESSTTSCCEEECCCTTCEE
T ss_pred             EEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHeEEccCCCcceEEeeccccee
Confidence                                        458899999999999999   999999999999999887  99999999975


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ...       ......||+.|+|||++.+..++.++|||||||++|||++|.+||...
T Consensus       252 ~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          252 EHQ-------RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             TTC-------CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCC-------cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            432       223357899999999999999999999999999999999999999754

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=7.8e-39  Score=291.32  Aligned_cols=215  Identities=20%  Similarity=0.236  Sum_probs=154.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cch-HHHHHHHHHHhhcCCCChHHH-------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GAS-KSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~-~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++..... ... ..+..+...++.++||||+++             
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv   84 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC   84 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence            35679999999999999999999999999999999975422 222 234445556888999999986             


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                 ..++.|++.||.|||++ +   |+||||||+||+++.++.+||+|||++....
T Consensus        85 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T 3fme_A           85 MELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS---VIHRDVKPSNVLINALGQVKMCDFGISGYLV  161 (290)
T ss_dssp             EECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSC---CCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred             EehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCC---eecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence                                       45889999999999998 8   9999999999999999999999999997654


Q ss_pred             cCCCCCccCCCCccccccccchhhh----cCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYD----LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ...     ......||+.|+|||++    .+..++.++||||||+++|+|++|..||.........+........+.   
T Consensus       162 ~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~---  233 (290)
T 3fme_A          162 DDV-----AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ---  233 (290)
T ss_dssp             -------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC---
T ss_pred             ccc-----cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCC---
Confidence            322     12234689999999996    556788999999999999999999999974322111111111111000   


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                               ...                  ...+..+.+++.+||+.||++|||+.++++
T Consensus       234 ---------~~~------------------~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          234 ---------LPA------------------DKFSAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             ---------CCT------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ---------ccc------------------ccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence                     000                  022345789999999999999999999987

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=2.3e-38  Score=307.98  Aligned_cols=211  Identities=22%  Similarity=0.290  Sum_probs=169.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|.+.+.||+|+||.||+|++..+++.||||++....   ......+.+|+.+++.++||||+++             
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv   94 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV   94 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            568999999999999999999999999999999997432   2234678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||++....... 
T Consensus        95 ~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~-  170 (476)
T 2y94_A           95 MEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE-  170 (476)
T ss_dssp             EECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCSGGGEEECTTCCEEECCCSSCEECCTTC-
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CCcccccHHHEEEecCCCeEEEeccchhhccccc-
Confidence                                    568999999999999999   9999999999999999999999999998654321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          ......||+.|+|||++.+..+ +.++|||||||++|+|++|..||.....     .....        .+.+...
T Consensus       171 ----~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~-----~~~~~--------~i~~~~~  233 (476)
T 2y94_A          171 ----FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV-----PTLFK--------KICDGIF  233 (476)
T ss_dssp             ----CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS-----HHHHH--------HHHTTCC
T ss_pred             ----cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH-----HHHHH--------HHhcCCc
Confidence                2234578999999999988776 6899999999999999999999974211     11111        1111100


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      . ..                   ......+.+|+.+||+.||.+|||+.++++
T Consensus       234 ~-~p-------------------~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          234 Y-TP-------------------QYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             C-CC-------------------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             C-CC-------------------ccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            0 00                   012235689999999999999999999987

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.7e-38  Score=319.43  Aligned_cols=218  Identities=20%  Similarity=0.282  Sum_probs=168.1

Q ss_pred             ccceecCceEEEEEEE--CCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVF--DLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~--~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+  ..+++.||||+++...  ....+.+.+|+.+|++++||||+++                   
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g  454 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG  454 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCC
Confidence            3799999999999965  4556899999997543  2335789999999999999999987                   


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       +.++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+++........ .....
T Consensus       455 ~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~---iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~-~~~~~  530 (635)
T 4fl3_A          455 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY-YKAQT  530 (635)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----------
T ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc-ccccc
Confidence                             568899999999999999   999999999999999999999999999876433221 12223


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ...+|+.|+|||++.+..++.++|||||||++|||++ |+.||......  ....            .+........   
T Consensus       531 ~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~------------~i~~~~~~~~---  593 (635)
T 4fl3_A          531 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTA------------MLEKGERMGC---  593 (635)
T ss_dssp             ----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHH------------HHHTTCCCCC---
T ss_pred             CCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHH------------HHHcCCCCCC---
Confidence            3456788999999999999999999999999999998 99999743221  1111            1111111000   


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                                     +..++..+.+|+..||+.||++||++.+|++.|+.+...+
T Consensus       594 ---------------p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l  633 (635)
T 4fl3_A          594 ---------------PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  633 (635)
T ss_dssp             ---------------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence                           1134456889999999999999999999999999987655

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=287.79  Aligned_cols=214  Identities=20%  Similarity=0.229  Sum_probs=164.2

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      +.|.....||+|+||.||+|.+..+++.||||.+........+.+.+|+.+++.++||||+++                 
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            445566689999999999999999999999999987666666789999999999999999986                 


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.|++.||.|||+.+   |+|+||||+||+++. ++.+||+|||++....... 
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-  177 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN-  177 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCC---EEccCCChhhEEEECCCCCEEEeecccccccCCCC-
Confidence                                   347889999999999999   999999999999987 8999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCC--CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSE--VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                         .......|++.|+|||++.+..  ++.++||||||+++|+|++|+.||................            .
T Consensus       178 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~------------~  242 (295)
T 2clq_A          178 ---PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF------------K  242 (295)
T ss_dssp             ------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH------------C
T ss_pred             ---CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc------------c
Confidence               1223456899999999987643  7889999999999999999999996432111110000000            0


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ......                  ......+.+++.+||+.||++|||+.++++
T Consensus       243 ~~~~~~------------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          243 VHPEIP------------------ESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             CCCCCC------------------TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             cccccc------------------ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            000000                  123346789999999999999999999975

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=2.8e-38  Score=286.60  Aligned_cols=212  Identities=21%  Similarity=0.288  Sum_probs=171.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....    ..+.+|+.+++.++||||+++                
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            346999999999999999999999889999999997543    356789999999999999853                


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceE
Q 039228          135 ---------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH  175 (356)
Q Consensus       135 ---------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~k  175 (356)
                                                             +.++.|++.||.|||+.+   |+||||||+||+++.++.+|
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~k  162 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVK  162 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEE
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCCHHHEEEcCCCCEE
Confidence                                                   457889999999999999   99999999999999999999


Q ss_pred             EcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH
Q 039228          176 IGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       176 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      |+|||++.......     ......+++.|+|||.+.+..++.++||||||+++|+|++|..|+...       ..... 
T Consensus       163 l~Dfg~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-------~~~~~-  229 (284)
T 2a19_B          163 IGDFGLVTSLKNDG-----KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-------SKFFT-  229 (284)
T ss_dssp             ECCCTTCEESSCCS-----CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-------HHHHH-
T ss_pred             ECcchhheeccccc-----cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-------HHHHH-
Confidence            99999998654322     223356899999999999999999999999999999999999886421       01100 


Q ss_pred             hCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          256 AFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                             .+....+..                      .....+.+++.+||+.||.+|||+.++++.|..+....
T Consensus       230 -------~~~~~~~~~----------------------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~  276 (284)
T 2a19_B          230 -------DLRDGIISD----------------------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP  276 (284)
T ss_dssp             -------HHHTTCCCT----------------------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred             -------Hhhcccccc----------------------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence                   111111110                      12234678999999999999999999999999887654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=3.3e-38  Score=292.71  Aligned_cols=223  Identities=22%  Similarity=0.304  Sum_probs=171.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEE--EEEEeecc-CccchHHHHHHHHHHhhc-CCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVV--AIKVLSIQ-CQGASKSFMAECKALKNI-CHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~v--avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|++..++..+  |+|.+... .....+.+.+|+.+++++ +||||+++            
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  103 (327)
T 1fvr_A           24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL  103 (327)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence            357999999999999999999998887755  99998743 233456788999999999 89999976            


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc
Q 039228          135 -----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF  173 (356)
Q Consensus       135 -----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~  173 (356)
                                                               +.++.|++.||.|||+.+   |+||||||+||+++.++.
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~~~~  180 (327)
T 1fvr_A          104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYV  180 (327)
T ss_dssp             EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGC
T ss_pred             EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCccceEEEcCCCe
Confidence                                                     247889999999999999   999999999999999999


Q ss_pred             eEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHH
Q 039228          174 AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNF  252 (356)
Q Consensus       174 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~  252 (356)
                      +||+|||+++.....     .......+++.|+|||++.+..++.++||||||+++|+|++ |..||.....     ...
T Consensus       181 ~kL~Dfg~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~  250 (327)
T 1fvr_A          181 AKIADFGLSRGQEVY-----VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-----AEL  250 (327)
T ss_dssp             EEECCTTCEESSCEE-----CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHH
T ss_pred             EEEcccCcCcccccc-----ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH-----HHH
Confidence            999999999743221     11223456788999999988889999999999999999998 9999964321     111


Q ss_pred             HHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          253 ARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      ...         +........                  ...+...+.+++.+||+.||.+|||+.++++.|+.+.+...
T Consensus       251 ~~~---------~~~~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          251 YEK---------LPQGYRLEK------------------PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             HHH---------GGGTCCCCC------------------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             HHH---------hhcCCCCCC------------------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence            111         111000000                  01233467899999999999999999999999999987764


Q ss_pred             c
Q 039228          333 P  333 (356)
Q Consensus       333 ~  333 (356)
                      .
T Consensus       304 ~  304 (327)
T 1fvr_A          304 T  304 (327)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.4e-38  Score=300.71  Aligned_cols=214  Identities=26%  Similarity=0.275  Sum_probs=160.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHH-HhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKA-LKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~-l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|+++.+++.||||++.....   .....+..|..+ ++.++||||+++            
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            4679999999999999999999999999999999975432   233456677776 577899999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.||+.||.|||+++   |+||||||+|||++.+|.+||+|||+++......
T Consensus       117 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---ivHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~  193 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLN---IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN  193 (373)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCC
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEECCCCCEEEeeCccccccccCC
Confidence                                     347889999999999999   9999999999999999999999999998543221


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                          .......||+.|+|||++.+..++.++|||||||++|||++|..||.....     ....        ..++...+
T Consensus       194 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~--------~~i~~~~~  256 (373)
T 2r5t_A          194 ----STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT-----AEMY--------DNILNKPL  256 (373)
T ss_dssp             ----CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH-----HHHH--------HHHHHSCC
T ss_pred             ----CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH-----HHHH--------HHHHhccc
Confidence                223457789999999999999999999999999999999999999964211     1111        11111111


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                      .  ..                  ......+.+|+.+||+.||.+||++.+.++.+
T Consensus       257 ~--~~------------------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i  291 (373)
T 2r5t_A          257 Q--LK------------------PNITNSARHLLEGLLQKDRTKRLGAKDDFMEI  291 (373)
T ss_dssp             C--CC------------------SSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred             C--CC------------------CCCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence            0  00                  02233568999999999999999986544443

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=4e-38  Score=295.29  Aligned_cols=229  Identities=21%  Similarity=0.216  Sum_probs=168.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||||++....  ....+.+.+|+.+++.++||||+++              
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            467999999999999999999999999999999997542  2334678899999999999999976              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.||+.||.|||+++   |+||||||+||+++.++.+||+|||++......
T Consensus       103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  179 (353)
T 3coi_A          103 DFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAG---VVHRDLKPGNLAVNEDCELKILDFGLARHADAE  179 (353)
T ss_dssp             CCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSSCCGGGEEECTTCCEEECSTTCTTC----
T ss_pred             eEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEeECCCCcEEEeecccccCCCCC
Confidence                                      458899999999999999   999999999999999999999999999754321


Q ss_pred             CCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC-c-----
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN-R-----  260 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~-~-----  260 (356)
                             .....+|+.|+|||++.+ ..++.++||||||+++|+|++|..||......+ .+........ +. .     
T Consensus       180 -------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~  251 (353)
T 3coi_A          180 -------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQKL  251 (353)
T ss_dssp             -----------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHHCBCCHHHHTTC
T ss_pred             -------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHHHH
Confidence                   223567999999999877 678999999999999999999999997432111 1111111110 10 0     


Q ss_pred             ----hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 ----VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          ....+.. +....           ..............+.+++.+||+.||++|||+.++++
T Consensus       252 ~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          252 NDKAAKSYIQS-LPQTP-----------RKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             SCHHHHHHHHT-SCBCS-----------SCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhHHHHHHHHh-CcCCC-----------CccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                0001100 00000           00000011133456789999999999999999999986

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=9.1e-38  Score=283.41  Aligned_cols=220  Identities=15%  Similarity=0.149  Sum_probs=169.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc------cchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ------GASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++.....      ...+.+.+|+.++++++||||+++           
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            459999999999999999999999999999999875422      235778999999999999999987           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC----ceEEcccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL----FAHIGDFELARF  184 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~----~~kl~Dfg~a~~  184 (356)
                                                ..++.|++.||.|||+.+   |+||||||+||+++.++    .+||+|||++..
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~  161 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHK  161 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCCCCChHHEEEecCCCCCCceEEEeccccee
Confidence                                      568899999999999999   99999999999998877    899999999986


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      .....     ......+++.|+|||++.+..++.++||||||+++|+|++|..||......  ...............  
T Consensus       162 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~--  232 (283)
T 3bhy_A          162 IEAGN-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ--ETLTNISAVNYDFDE--  232 (283)
T ss_dssp             CC-------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTTCCCCCH--
T ss_pred             ccCCC-----cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH--HHHHHhHhcccCCcc--
Confidence            54322     123356899999999999999999999999999999999999999643211  110000000000000  


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH--HHHHhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH--DLQSVN  328 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~--~L~~i~  328 (356)
                                               ......+..+.+++.+||+.||.+|||+.++++  .++.+.
T Consensus       233 -------------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  273 (283)
T 3bhy_A          233 -------------------------EYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR  273 (283)
T ss_dssp             -------------------------HHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred             -------------------------hhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence                                     000122345789999999999999999999997  345444

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=7.9e-38  Score=286.86  Aligned_cols=215  Identities=21%  Similarity=0.263  Sum_probs=172.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .+.|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.+++.++||||+++               
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            356999999999999999999999999999999997543 3345788999999999999999986               


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||++.......    
T Consensus       101 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~----  173 (303)
T 3a7i_A          101 YLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEK---KIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ----  173 (303)
T ss_dssp             CCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECBTTB----
T ss_pred             eCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChheEEECCCCCEEEeecccceecCccc----
Confidence                                 568899999999999999   9999999999999999999999999997654322    


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                      .......|++.|+|||++.+..++.++||||||+++|+|++|..||......  ..........+        +.+..  
T Consensus       174 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~--------~~~~~--  241 (303)
T 3a7i_A          174 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNNP--------PTLEG--  241 (303)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCC--------CCCCS--
T ss_pred             cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCCC--------CCCcc--
Confidence            1223467899999999999999999999999999999999999999643211  11111100000        00000  


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                                          ..+..+.+++.+||+.||.+|||+.+|++..
T Consensus       242 --------------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~  272 (303)
T 3a7i_A          242 --------------------NYSKPLKEFVEACLNKEPSFRPTAKELLKHK  272 (303)
T ss_dssp             --------------------SCCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred             --------------------ccCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence                                2233578999999999999999999998854

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=3.2e-38  Score=292.99  Aligned_cols=214  Identities=19%  Similarity=0.211  Sum_probs=145.9

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH---------------------
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF---------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l---------------------  134 (356)
                      .+.||+|+||.||+|.+..+++.||||++...   ....+.+|+.+++.+. ||||+++                     
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            37899999999999999999999999999743   3466788999999997 9999987                     


Q ss_pred             ----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC---ceEEcccccccccccCCCCCccC
Q 039228          135 ----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL---FAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 ----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                      ..++.|++.||.|||+.+   |+||||||+|||++.++   .+||+|||+++......    ..
T Consensus        93 L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~----~~  165 (325)
T 3kn6_A           93 LFERIKKKKHFSETEASYIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN----QP  165 (325)
T ss_dssp             HHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEEEC----CEEEECCCTTCEECCC--------
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecCCCHHHEEEecCCCcccEEEeccccceecCCCC----Cc
Confidence                            458899999999999999   99999999999997665   89999999998654322    22


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|..||........          .....+++.....+....
T Consensus       166 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~----------~~~~~~~~~~i~~~~~~~  235 (325)
T 3kn6_A          166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLT----------CTSAVEIMKKIKKGDFSF  235 (325)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-----------------CCCHHHHHHHHTTTCCCC
T ss_pred             ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccc----------cccHHHHHHHHHcCCCCC
Confidence            2345679999999999999999999999999999999999999975332110          001111122111111100


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                  ...........+.+|+.+||+.||.+|||+.++++
T Consensus       236 ------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          236 ------------EGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             ------------CSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             ------------CcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence                        00001123456789999999999999999999864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=287.80  Aligned_cols=212  Identities=23%  Similarity=0.299  Sum_probs=149.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....   ....+.+.+|+.++++++||||+++             
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            467999999999999999999999899999999996432   2234678899999999999999986             


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++.......
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~  166 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH  166 (278)
T ss_dssp             EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred             EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence                                     558899999999999999   9999999999999999999999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                      .    ......||+.|+|||.+.+..++.++||||||+++|+|++|+.||........                 +....
T Consensus       167 ~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----------------~~~~~  225 (278)
T 3cok_A          167 E----KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-----------------LNKVV  225 (278)
T ss_dssp             -----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------------------CC
T ss_pred             C----cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-----------------HHHHh
Confidence            1    12235689999999999988899999999999999999999999974322110                 00000


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ......                +......+.+++.+||+.||++|||+.++++
T Consensus       226 ~~~~~~----------------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          226 LADYEM----------------PSFLSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             SSCCCC----------------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hcccCC----------------ccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            000000                0012335789999999999999999999875

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-38  Score=302.59  Aligned_cols=225  Identities=18%  Similarity=0.122  Sum_probs=171.3

Q ss_pred             hHHHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-----
Q 039228           63 YYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-----  134 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-----  134 (356)
                      .+.+.....++|++.+.||+|+||.||+|+.+.+++.||||++++..   ....+.+.+|..++..++||||+++     
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            34555667789999999999999999999999999999999997432   2233457889999999999999986     


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                                       ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+
T Consensus       132 ~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~g---iiHrDLKp~NILld~~g~vkL~DFGl  208 (412)
T 2vd5_A          132 DENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGS  208 (412)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTT
T ss_pred             eCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccCHHHeeecCCCCEEEeechh
Confidence                                             447889999999999999   99999999999999999999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhc-------CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHH
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDL-------GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~  254 (356)
                      ++.......   .......||+.|+|||++.       ...++.++|||||||++|||++|+.||......     ... 
T Consensus       209 a~~~~~~~~---~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~-----~~~-  279 (412)
T 2vd5_A          209 CLKLRADGT---VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA-----ETY-  279 (412)
T ss_dssp             CEECCTTSC---EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHH-
T ss_pred             heeccCCCc---cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH-----HHH-
Confidence            986543221   1223467899999999987       456899999999999999999999999642211     110 


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCC---CChHHHHH
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDR---MNVPNAVH  322 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~R---Ps~~~vl~  322 (356)
                             ..++........+               ......+..+.+|+.+||. +|.+|   |+++++++
T Consensus       280 -------~~i~~~~~~~~~p---------------~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          280 -------GKIVHYKEHLSLP---------------LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             -------HHHHTHHHHCCCC-------------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             -------HHHHhcccCcCCC---------------ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence                   0111100000000               0001233457899999999 99998   58888764

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=7.9e-38  Score=286.88  Aligned_cols=215  Identities=16%  Similarity=0.208  Sum_probs=168.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC----ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC----QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....    ......+.+|+.+++.++||||+++            
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            578999999999999999999999999999999997432    2345678999999999999999986            


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.|++.||.|||+++   |+||||||+||+++.++.+||+|||++....
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~---i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~  160 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALH  160 (305)
T ss_dssp             EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCC---eeecCCCcccEEEcCCCcEEeeccccccccC
Confidence                                        458889999999999999   9999999999999999999999999998654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCC--CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSE--VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ....  ........||..|+|||++.+..  ++.++||||||+++|+|++|..||....     .......        +
T Consensus       161 ~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~--------i  225 (305)
T 2wtk_C          161 PFAA--DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN-----IYKLFEN--------I  225 (305)
T ss_dssp             TTCS--SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHH--------H
T ss_pred             cccc--ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch-----HHHHHHH--------H
Confidence            3221  11223456899999999997644  3779999999999999999999997421     1111110        0


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...    ...                ....+...+.+++.+||+.||.+|||+.++++.
T Consensus       226 ~~~----~~~----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          226 GKG----SYA----------------IPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             HHC----CCC----------------CCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             hcC----CCC----------------CCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            000    000                000233457899999999999999999999874

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=8.7e-38  Score=289.26  Aligned_cols=216  Identities=20%  Similarity=0.211  Sum_probs=164.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--------cchHHHHHHHHHHhhcCCCChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------GASKSFMAECKALKNICHRNLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l--------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||||++.....        .....+.+|+.+++.++||||+++        
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            3569999999999999999999999999999999864321        122457899999999999999986        


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc---eEEccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF---AHIGDFELAR  183 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~---~kl~Dfg~a~  183 (356)
                                                  ..++.||+.||.|||+++   |+||||||+||+++.++.   +||+|||++.
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence                                        458899999999999999   999999999999987654   9999999997


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ......     ......||+.|+|||++.   ...++.++|||||||++|+|++|..||....... .+...........
T Consensus       166 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~  239 (322)
T 2ycf_A          166 ILGETS-----LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITSGKYNF  239 (322)
T ss_dssp             ECCCCH-----HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-CHHHHHHHTCCCC
T ss_pred             eccccc-----ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-HHHHHHHhCcccc
Confidence            653211     112356899999999974   5678899999999999999999999997543222 2222111111000


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...                           ........+.+++.+||+.||++|||+.++++
T Consensus       240 ~~~---------------------------~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          240 IPE---------------------------VWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             CHH---------------------------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             Cch---------------------------hhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            000                           00123346789999999999999999999985

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.2e-38  Score=293.94  Aligned_cols=224  Identities=24%  Similarity=0.337  Sum_probs=168.6

Q ss_pred             cCCCCccccceecCceEEEEEE-----ECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGV-----FDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~-----~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|++.+.||+|+||.||+|.     ...++..||||.+.... ......+.+|+.++++++||||+++          
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence            4679999999999999999999     45567899999996442 3345678899999999999999986          


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIG  177 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~  177 (356)
                                                        +.++.|++.||.|||+.+   |+||||||+||+++.   +..+||+
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~---i~H~dlkp~NIli~~~~~~~~~kl~  185 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIG  185 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCC---eecCcCCHhHEEEecCCCcceEEEC
Confidence                                              457889999999999999   999999999999984   4569999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHh
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      |||++........  ........+++.|+|||.+.+..++.++||||||+++|+|++ |..||.....  ..........
T Consensus       186 Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~  261 (327)
T 2yfx_A          186 DFGMARDIYRASY--YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTSG  261 (327)
T ss_dssp             CCHHHHHHHC--------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHTT
T ss_pred             ccccccccccccc--cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH--HHHHHHHhcC
Confidence            9999976543221  122234567889999999988899999999999999999998 9999864221  1111111110


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                                  ......                  ..++..+.+++.+||+.||.+|||+.+|++.|+.+...-
T Consensus       262 ------------~~~~~~------------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          262 ------------GRMDPP------------------KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             ------------CCCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             ------------CCCCCC------------------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence                        000000                  123346789999999999999999999999999887643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=9.6e-38  Score=283.70  Aligned_cols=210  Identities=22%  Similarity=0.265  Sum_probs=169.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.+++.++||||+++             
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   92 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM   92 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence            467999999999999999999999999999999986432   2234678899999999999999986             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+||+++.++.++|+|||++......  
T Consensus        93 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~--  167 (284)
T 2vgo_A           93 LEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSL--  167 (284)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECTTCCEEECCCTTCEECSSS--
T ss_pred             EEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCHHHEEEcCCCCEEEecccccccCccc--
Confidence                                    458899999999999999   999999999999999999999999998754321  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......|++.|+|||++.+..++.++||||||+++|+|++|..||......     ....        .+..... 
T Consensus       168 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~~~--------~~~~~~~-  229 (284)
T 2vgo_A          168 ----RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT-----ETHR--------RIVNVDL-  229 (284)
T ss_dssp             ----CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-----HHHH--------HHHTTCC-
T ss_pred             ----ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh-----HHHH--------HHhcccc-
Confidence                123456899999999999999999999999999999999999999642211     1100        0111000 


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       ...                  ......+.+++.+||+.||.+|||+.++++
T Consensus       230 -~~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          230 -KFP------------------PFLSDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             -CCC------------------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             -CCC------------------CcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence             000                  012335689999999999999999999986

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.1e-38  Score=287.37  Aligned_cols=212  Identities=21%  Similarity=0.215  Sum_probs=162.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ++|.+.+.||+|+||.||+|.+..++..||+|++.... ....+.+.+|+.+++.++||||+++                
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            46999999999999999999999999999999997553 3345788999999999999999986                


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe---CCCCceEEcccccccccc
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~  186 (356)
                                               ..++.|++.||.|||+.+   |+||||||+||++   +.++.+||+|||++....
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~---ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~  178 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK  178 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCC---EEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence                                     458889999999999999   9999999999999   456889999999997654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...     ......||+.|+|||.+. ..++.++||||||+++|+|++|..||......  ..........+        
T Consensus       179 ~~~-----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~~--------  242 (285)
T 3is5_A          179 SDE-----HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE--EVQQKATYKEP--------  242 (285)
T ss_dssp             -------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCC--------
T ss_pred             Ccc-----cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH--HHHhhhccCCc--------
Confidence            321     223456899999999985 56889999999999999999999999743211  11111100000        


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       ......                   ......+.+++.+||+.||.+|||+.||++
T Consensus       243 -~~~~~~-------------------~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          243 -NYAVEC-------------------RPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             -CCCC---------------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             -cccccc-------------------CcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence             000000                   012235679999999999999999999985

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.5e-37  Score=296.60  Aligned_cols=212  Identities=18%  Similarity=0.199  Sum_probs=159.7

Q ss_pred             cCCCCcc-ccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHh-hcCCCChHHH--------------
Q 039228           71 TDGFPLI-NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALK-NICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~-~l~h~niv~l--------------  134 (356)
                      .++|.+. +.||+|+||.||+|.+..+++.||||++..     ...+.+|+.++. ..+||||+++              
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence            4567776 689999999999999999999999999863     245678888874 4589999985              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEcccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELA  182 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a  182 (356)
                                                   ..++.||+.||.|||+.+   |+||||||+|||++.   ++.+||+|||++
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~~~kl~DFG~a  211 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFA  211 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred             EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCcCcceEEEecCCCCccEEEEecccc
Confidence                                         458899999999999999   999999999999997   789999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCc--cHHHHHHH-hCCC
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL--NLHNFARM-AFPN  259 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~--~~~~~~~~-~~~~  259 (356)
                      +.....     .......||+.|+|||++.+..++.++|||||||++|+|++|..||........  ........ .+. 
T Consensus       212 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~-  285 (400)
T 1nxk_A          212 KETTSH-----NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYE-  285 (400)
T ss_dssp             EECC----------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCC-
T ss_pred             cccCCC-----CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCccc-
Confidence            865422     122346789999999999999999999999999999999999999975432211  11111111 000 


Q ss_pred             chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          260 RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                               +...                  ....+...+.+|+.+||+.||++|||+.+|++.
T Consensus       286 ---------~~~~------------------~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h  322 (400)
T 1nxk_A          286 ---------FPNP------------------EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  322 (400)
T ss_dssp             ---------CCTT------------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             ---------CCCc------------------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence                     0000                  000233457899999999999999999999874

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=4.6e-38  Score=287.22  Aligned_cols=213  Identities=17%  Similarity=0.184  Sum_probs=170.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++....   ....+.+.+|+.+++.++||||+++             
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            457999999999999999999999999999999987542   2345678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||++....... 
T Consensus        94 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~-  169 (294)
T 2rku_A           94 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG-  169 (294)
T ss_dssp             EECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCSTT-
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEcCCCCEEEEeccCceecccCc-
Confidence                                    458899999999999999   9999999999999999999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .......||+.|+|||.+.+..++.++||||||+++|+|++|..||.....     .....        .+......
T Consensus       170 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~--------~~~~~~~~  233 (294)
T 2rku_A          170 ---ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYL--------RIKKNEYS  233 (294)
T ss_dssp             ---CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHH--------HHHTTCCC
T ss_pred             ---cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHH--------HHhhccCC
Confidence               122345689999999999998999999999999999999999999964321     11110        00000000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                        ..                  ......+.+++.+||+.||++|||+.++++.
T Consensus       234 --~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          234 --IP------------------KHINPVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             --CC------------------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             --Cc------------------cccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence              00                  0122357889999999999999999999874

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.5e-37  Score=294.71  Aligned_cols=244  Identities=16%  Similarity=0.111  Sum_probs=170.7

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..+++.||||++......    ..+|+.+++.++||||+++              
T Consensus         4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~----~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~   79 (383)
T 3eb0_A            4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY----KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP   79 (383)
T ss_dssp             --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS----CCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred             cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch----HHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence            4567899999999999999999999999999999998644322    2369999999999999852              


Q ss_pred             ----------------------------------------------------------------HHHHHHHHHHHHHHhh
Q 039228          135 ----------------------------------------------------------------ISIAIDVASALDYLHH  150 (356)
Q Consensus       135 ----------------------------------------------------------------~~i~~~i~~aL~~LH~  150 (356)
                                                                                      ..++.||+.||.|||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  159 (383)
T 3eb0_A           80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS  159 (383)
T ss_dssp             ------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                                                            3367899999999999


Q ss_pred             cCCCcEEecCCCCCCeEeC-CCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHH
Q 039228          151 HCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGIL  228 (356)
Q Consensus       151 ~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~  228 (356)
                      .+   |+||||||+||+++ .++.+||+|||+++......     ......+|..|+|||.+.+. .++.++|||||||+
T Consensus       160 ~g---i~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i  231 (383)
T 3eb0_A          160 LG---ICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE-----PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV  231 (383)
T ss_dssp             TT---EECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS-----CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred             Cc---CccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC-----CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence            99   99999999999998 68999999999998654322     22345679999999998775 48999999999999


Q ss_pred             HHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhch-hhHHHHHHHHHHHHHhhc
Q 039228          229 LLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKM-NSRLECLIFMVRIGAACS  307 (356)
Q Consensus       229 l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~Cl  307 (356)
                      +|||++|+.||...... ..+..............+....  ..+..  ...+......+. ......+..+.+|+.+||
T Consensus       232 l~ell~g~~pf~~~~~~-~~~~~i~~~~g~p~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  306 (383)
T 3eb0_A          232 FGELILGKPLFSGETSI-DQLVRIIQIMGTPTKEQMIRMN--PHYTE--VRFPTLKAKDWRKILPEGTPSLAIDLLEQIL  306 (383)
T ss_dssp             HHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHHC--TTC----CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHC
T ss_pred             HHHHHhCCCCCCCCChH-HHHHHHHHHhCCCCHHHHHHhC--ccccc--ccCCccCcccHHhhCCCCCCHHHHHHHHHHc
Confidence            99999999999753221 1222222222222222211100  00000  000000000000 001123446789999999


Q ss_pred             CCCcCCCCChHHHHH--HHHHhhh
Q 039228          308 MGSSQDRMNVPNAVH--DLQSVNN  329 (356)
Q Consensus       308 ~~dP~~RPs~~~vl~--~L~~i~~  329 (356)
                      +.||.+|||+.|+++  .++.+..
T Consensus       307 ~~dP~~R~t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          307 RYEPDLRINPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             CSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred             cCChhhCCCHHHHhcCHHHHHHHh
Confidence            999999999999985  3444443

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=8.9e-38  Score=284.76  Aligned_cols=213  Identities=23%  Similarity=0.284  Sum_probs=165.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..|.+.+.||+|+||.||+|.+..++..||+|.+....  ....+.+.+|+.+++.++||||+++               
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  105 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence            34888899999999999999999999999999987542  3345678899999999999999976               


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEccccccccccc
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~  187 (356)
                                                ..++.+++.||.|||+.+ .+|+||||||+||+++ .++.+||+|||++.....
T Consensus       106 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~-~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~  184 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA  184 (290)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred             EEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCC-CCEEECCCCHHHEEEECCCCCEEEeeCCCcccccc
Confidence                                      458899999999999874 3499999999999997 789999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .      ......||+.|+|||.+.+ .++.++||||||+++|+|++|..||.....    .............      
T Consensus       185 ~------~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~----~~~~~~~~~~~~~------  247 (290)
T 1t4h_A          185 S------FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVTSGVK------  247 (290)
T ss_dssp             T------SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHTTTCC------
T ss_pred             c------ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCc----HHHHHHHHhccCC------
Confidence            1      2223568999999998874 589999999999999999999999964321    1111111111000      


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                        ....                  ....+..+.+++.+||+.||.+|||+.+|++
T Consensus       248 --~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          248 --PASF------------------DKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             --CGGG------------------GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             --cccc------------------CCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence              0000                  0012235789999999999999999999985

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=286.66  Aligned_cols=238  Identities=21%  Similarity=0.230  Sum_probs=166.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++........+.+.+|+.++++++||||+++                
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            4679999999999999999999999999999999987666666789999999999999999875                


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEcccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFE  180 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg  180 (356)
                                                       ..++.|++.||.|||+.+   |+||||||+||+++ .++.+||+|||
T Consensus        90 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~Dfg  166 (320)
T 2i6l_A           90 SLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSAN---VLHRDLKPANLFINTEDLVLKIGDFG  166 (320)
T ss_dssp             -CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTTEEEECCCT
T ss_pred             cccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCC---EecCCCCHHHEEEcCCCCeEEEccCc
Confidence                                             347889999999999999   99999999999997 57799999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +++........ ........++..|+|||.+.+ ..++.++||||||+++|+|++|+.||......  ..........+.
T Consensus       167 ~~~~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~~~~~~~~  243 (320)
T 2i6l_A          167 LARIMDPHYSH-KGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL--EQMQLILESIPV  243 (320)
T ss_dssp             TCBCC---------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHHSCC
T ss_pred             cccccCCCccc-ccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHhcCC
Confidence            99865432211 122334567889999998865 67899999999999999999999999753221  111111111111


Q ss_pred             chH----HHhhh---hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 RVM----DIVNL---VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ~~~----~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...    ++...   .+......    ...-.    ..........+.+++.+||+.||++|||+.++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          244 VHEEDRQELLSVIPVYIRNDMTE----PHKPL----TQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             CCHHHHHHHHTTSCHHHHHHTTS----CCCCH----HHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CchhhhhhhhhcCcccccccccC----CCCCh----hHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence            000    00000   00000000    00000    0000123456889999999999999999999986

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.8e-38  Score=297.08  Aligned_cols=162  Identities=25%  Similarity=0.364  Sum_probs=141.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++..||+|++.... ....+.+.+|+.+++.++||||+++               
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            457999999999999999999999999999999997553 3345678999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                            ..++.+++.||.|||+. +   |+||||||+||+++.++.++|+|||++......   
T Consensus       112 ~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---  185 (360)
T 3eqc_A          112 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---  185 (360)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCC---EEcCCccHHHEEECCCCCEEEEECCCCcccccc---
Confidence                                  45889999999999995 8   999999999999999999999999999755322   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDF  241 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~  241 (356)
                         ......||+.|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       186 ---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  232 (360)
T 3eqc_A          186 ---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP  232 (360)
T ss_dssp             ---C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred             ---cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence               22335789999999999999999999999999999999999999975

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=3.7e-38  Score=289.30  Aligned_cols=214  Identities=21%  Similarity=0.253  Sum_probs=166.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++........+.+.+|+.+++.++||||+++                
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            3469999999999999999999999999999999986554455678899999999999999986                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe---CCCCceEEcccccccccccCCC
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                           ..++.|++.||.|||+.+   |+||||||+||++   +.++.++|+|||++......  
T Consensus        88 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~--  162 (304)
T 2jam_A           88 VSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG--  162 (304)
T ss_dssp             CCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB--
T ss_pred             CCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC--
Confidence                                 458889999999999999   9999999999999   78899999999998754321  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||++.+..++.++||||||+++|+|++|..||......  .+..........         +.
T Consensus       163 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~~---------~~  227 (304)
T 2jam_A          163 ----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--KLFEKIKEGYYE---------FE  227 (304)
T ss_dssp             ----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHCCCC---------CC
T ss_pred             ----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCCC---------CC
Confidence                122356899999999999999999999999999999999999999643211  111111110000         00


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..                  .....+..+.+++.+||+.||.+|||+.++++
T Consensus       228 ~~------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          228 SP------------------FWDDISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             TT------------------TTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cc------------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            00                  00123346789999999999999999999987

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=5.4e-38  Score=310.16  Aligned_cols=216  Identities=20%  Similarity=0.249  Sum_probs=170.4

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++....   ......+.+|+.+|+.++||||+++            
T Consensus       182 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l  261 (576)
T 2acx_A          182 TKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCL  261 (576)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEE
Confidence            4567999999999999999999999999999999997432   2334668899999999999999987            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+++   |+||||||+|||++.+|.+||+|||+++....
T Consensus       262 VmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~g---IvHrDLKPeNILld~~g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          262 VLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVPE  338 (576)
T ss_dssp             EECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EeccCCchheEEEeCCCCeEEEecccceeccc
Confidence                                       457889999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..     ......||+.|+|||++.+..++.++|||||||++|||++|..||....... ......         ..+..
T Consensus       339 ~~-----~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~~~~i~---------~~i~~  403 (576)
T 2acx_A          339 GQ-----TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVE---------RLVKE  403 (576)
T ss_dssp             TC-----CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-CHHHHH---------HHHHH
T ss_pred             Cc-----cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-hHHHHH---------HHhhc
Confidence            22     1223578999999999999899999999999999999999999997543221 111111         00100


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                      . .....                  ......+.+|+.+||+.||.+||     ++.+|++
T Consensus       404 ~-~~~~p------------------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          404 V-PEEYS------------------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             C-CCCCC------------------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             c-cccCC------------------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            0 00000                  02233578999999999999999     6777765

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=1.4e-38  Score=289.74  Aligned_cols=225  Identities=23%  Similarity=0.292  Sum_probs=163.8

Q ss_pred             cCCCCccccceecCceEEEEEEECC-CC--eEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-NR--AVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-~~--~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|++.+.||+|+||.||+|.+.. ++  ..||+|+++..   .....+.+.+|+.++++++||||+++          
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   96 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMK   96 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCE
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCce
Confidence            4579999999999999999998643 22  36999998744   23345678999999999999999986          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.+++.||.|||+.+   |+|+||||+||+++.++.+||+|||++.....
T Consensus        97 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  173 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQ  173 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred             eeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCC---cccCCCchheEEEcCCCCEEEccccccccccc
Confidence                                       458889999999999999   99999999999999999999999999986643


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      .... ........+|..|+|||++.+..++.++||||||+++|+|++ |..||.....     .......        ..
T Consensus       174 ~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~~~~~~--------~~  239 (291)
T 1u46_A          174 NDDH-YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-----SQILHKI--------DK  239 (291)
T ss_dssp             -CCE-EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHH--------HT
T ss_pred             cccc-hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH-----HHHHHHH--------Hc
Confidence            3221 122233556788999999988889999999999999999999 9999964321     1111100        00


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ......                  ....++..+.+++.+||+.||++|||+.+|++.|+++...
T Consensus       240 ~~~~~~------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          240 EGERLP------------------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             SCCCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             cCCCCC------------------CCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence            000000                  0013344678999999999999999999999999887653

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.1e-37  Score=306.86  Aligned_cols=211  Identities=24%  Similarity=0.286  Sum_probs=167.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|.+.+.||+|+||.||+|++..+++.||+|++....   ......+..|+.+++.++||||+++             
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  263 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV  263 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence            467999999999999999999999999999999997432   2334678899999999999999986             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.||+.||.|||+++   |+||||||+|||++.+|.+||+|||+++...
T Consensus       264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~g---IvHrDLKP~NILl~~~g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAVELK  340 (543)
T ss_dssp             ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcC---CcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence                                        347889999999999999   9999999999999999999999999998654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ...    .......||+.|+|||++.+..++.++|||||||++|||++|..||....... ........        +..
T Consensus       341 ~~~----~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~-~~~~~~~~--------i~~  407 (543)
T 3c4z_A          341 AGQ----TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQR--------VLE  407 (543)
T ss_dssp             TTC----CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC-CHHHHHHH--------HHH
T ss_pred             CCC----cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch-hHHHHHHH--------Hhh
Confidence            322    12234578999999999999999999999999999999999999997543211 11111111        111


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      ...  ..+                  ......+.+++.+||+.||.+||++
T Consensus       408 ~~~--~~p------------------~~~s~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          408 QAV--TYP------------------DKFSPASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             CCC--CCC------------------TTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred             ccc--CCC------------------cccCHHHHHHHHHhccCCHhHCCCC
Confidence            100  000                  0223356899999999999999976

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.9e-37  Score=295.31  Aligned_cols=232  Identities=19%  Similarity=0.159  Sum_probs=165.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      ..+|++.+.||+|+||.||+|++..++. ||+|++......    ..+|+.+++.++||||+++                
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~  113 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL  113 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence            3469999999999999999999987755 888887543221    2369999999999999975                


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELAR  183 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~  183 (356)
                                                    ..++.||+.||.|||+.+   |+||||||+|||++ .++.+||+|||+++
T Consensus       114 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivHrDlkp~Nill~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          114 NLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             EEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ccCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence                                          347889999999999999   99999999999999 79999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ......     ......+|+.|+|||++.+. .++.++|||||||++|||++|+.||...... ..+.............
T Consensus       191 ~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~  264 (394)
T 4e7w_A          191 ILIAGE-----PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIKVLGTPSRE  264 (394)
T ss_dssp             ECCTTC-----CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHH
T ss_pred             cccCCC-----CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHH
Confidence            654322     12245679999999998765 5899999999999999999999999753221 1222222222211111


Q ss_pred             HH--hhhhhc-cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          263 DI--VNLVLL-NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       263 ~~--~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .+  .++... .....   ....-.....   .......+.+|+.+||+.||.+|||+.++++
T Consensus       265 ~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          265 QIKTMNPNYMEHKFPQ---IRPHPFSKVF---RPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             HHHHHCGGGSSSCCCC---CCCCCHHHHS---CTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHhhChhhhhhcccc---ccCCcHHHhc---cccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence            11  111110 00000   0000000000   0023346789999999999999999999986

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=2e-38  Score=299.51  Aligned_cols=218  Identities=11%  Similarity=0.072  Sum_probs=155.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhc--CCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNI--CHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~niv~l-----------  134 (356)
                      ..+|.+.+.||+|+||.||+|.+..+++.||||++.....   ...+.+.+|+.+++.+  +||||+++           
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            3459999999999999999999999999999999986542   2345667785444444  69997751           


Q ss_pred             -------------------------------------------------H-------HHHHHHHHHHHHHhhcCCCcEEe
Q 039228          135 -------------------------------------------------I-------SIAIDVASALDYLHHHCQELILH  158 (356)
Q Consensus       135 -------------------------------------------------~-------~i~~~i~~aL~~LH~~~~~~iiH  158 (356)
                                                                       .       .++.||+.||+|||+++   |+|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~---ivH  217 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKG---LVH  217 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---EEE
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCC---Ccc
Confidence                                                             1       34589999999999999   999


Q ss_pred             cCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCC
Q 039228          159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRR  236 (356)
Q Consensus       159 ~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~  236 (356)
                      |||||+|||++.++.+||+|||+++......       ....+|+.|+|||++.+  ..++.++|||||||++|||++|+
T Consensus       218 rDikp~NIll~~~~~~kL~DFG~a~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~  290 (371)
T 3q60_A          218 GHFTPDNLFIMPDGRLMLGDVSALWKVGTRG-------PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF  290 (371)
T ss_dssp             TTCSGGGEEECTTSCEEECCGGGEEETTCEE-------EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             CcCCHHHEEECCCCCEEEEecceeeecCCCc-------cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence            9999999999999999999999998653211       13456799999999987  67999999999999999999999


Q ss_pred             CCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC
Q 039228          237 KPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN  316 (356)
Q Consensus       237 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs  316 (356)
                      .||..........       +....   ..........              ......++..+.+|+.+||+.||++|||
T Consensus       291 ~Pf~~~~~~~~~~-------~~~~~---~~~~~~~~~~--------------~~~~~~~~~~~~~li~~~L~~dP~~Rpt  346 (371)
T 3q60_A          291 LPFGLVTPGIKGS-------WKRPS---LRVPGTDSLA--------------FGSCTPLPDFVKTLIGRFLNFDRRRRLL  346 (371)
T ss_dssp             CSTTBCCTTCTTC-------CCBCC---TTSCCCCSCC--------------CTTSSCCCHHHHHHHHHHTCSSTTTCCC
T ss_pred             CCCCCcCcccccc-------hhhhh---hhhccccccc--------------hhhccCCCHHHHHHHHHHcCCChhhCCC
Confidence            9997643221100       00000   0000000000              0000123346789999999999999999


Q ss_pred             hHHHHH
Q 039228          317 VPNAVH  322 (356)
Q Consensus       317 ~~~vl~  322 (356)
                      +.++++
T Consensus       347 ~~e~l~  352 (371)
T 3q60_A          347 PLEAME  352 (371)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=2.7e-37  Score=291.25  Aligned_cols=217  Identities=17%  Similarity=0.233  Sum_probs=168.5

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--------cchHHHHHHHHHHhhc-CCCChHHH----
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------GASKSFMAECKALKNI-CHRNLVRF----  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~niv~l----  134 (356)
                      ....++|.+.+.||+|+||.||+|++..+|+.||||++.....        ...+.+.+|+.+++++ +||||+++    
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~  169 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY  169 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence            3445679999999999999999999998899999999875431        1135678899999999 79999986    


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                                       ..++.||+.||.|||+.|   |+|+||||+||+++.++.++|+|||+
T Consensus       170 ~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~g---i~H~Dlkp~NIl~~~~~~ikl~DfG~  246 (365)
T 2y7j_A          170 ESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGF  246 (365)
T ss_dssp             EBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             eeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEECCCCCEEEEecCc
Confidence                                             458899999999999999   99999999999999999999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcC------CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM  255 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~  255 (356)
                      +..+....     ......||+.|+|||++.+      ..++.++|||||||++|+|++|..||.....  .........
T Consensus       247 ~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~~~~~~i~~  319 (365)
T 2y7j_A          247 SCHLEPGE-----KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--ILMLRMIME  319 (365)
T ss_dssp             CEECCTTC-----CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHH
T ss_pred             ccccCCCc-----ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHh
Confidence            98664322     2234678999999999863      3588999999999999999999999964211  111111111


Q ss_pred             h-CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          256 A-FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       256 ~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      . +....     +.+                       ......+.+++.+||+.||++|||+.++++
T Consensus       320 ~~~~~~~-----~~~-----------------------~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          320 GQYQFSS-----PEW-----------------------DDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             TCCCCCH-----HHH-----------------------SSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCCCCCC-----ccc-----------------------ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            0 00000     000                       022335789999999999999999999986

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.2e-37  Score=304.58  Aligned_cols=214  Identities=21%  Similarity=0.262  Sum_probs=166.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||||++...  .......+.+|+.++++++||||+++               
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence            4699999999999999999999999999999999643  23345778999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC---CCCceEEcccccccccccCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD---NDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~---~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                            ..++.||+.||.|||+.+   |+||||||+|||++   .++.+||+|||+++......
T Consensus       102 ~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~  178 (486)
T 3mwu_A          102 LYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT  178 (486)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC
Confidence                                  458899999999999999   99999999999995   46679999999997654321


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                           ......||+.|+|||++.+ .++.++|||||||++|+|++|..||....... .+.......+.....       
T Consensus       179 -----~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~~-------  244 (486)
T 3mwu_A          179 -----KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVETGKYAFDLP-------  244 (486)
T ss_dssp             --------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCSCSG-------
T ss_pred             -----ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCCCCCc-------
Confidence                 2234578999999999876 58999999999999999999999996432110 011111111100000       


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                                           ........+.+++.+||+.||.+|||+.++++.
T Consensus       245 ---------------------~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          245 ---------------------QWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             ---------------------GGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             ---------------------ccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                                 001223457899999999999999999999874

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2.5e-38  Score=286.52  Aligned_cols=218  Identities=20%  Similarity=0.255  Sum_probs=168.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|.+....  ....+.+.+|+.++++++||||+++              
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            467999999999999999999999999999999997543  2345678899999999999999986              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcC--CCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHC--QELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~--~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                   +.++.|++.||.|||+.+  ..+|+||||||+||+++.++.+||+|||++.
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  164 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence                                         458889999999999976  2349999999999999999999999999997


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ......    .......|+..|+|||.+.+..++.++||||||+++|+|++|..||.....  ..+.......       
T Consensus       165 ~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~~-------  231 (279)
T 2w5a_A          165 ILNHDT----SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELAGKIREG-------  231 (279)
T ss_dssp             HC---C----HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHT-------
T ss_pred             eecccc----ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH--HHHHHHHhhc-------
Confidence            653321    111235678999999999999999999999999999999999999974321  1111111100       


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL  324 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L  324 (356)
                          ... ..                  +...+..+.+++.+||+.||.+|||+.+|++.+
T Consensus       232 ----~~~-~~------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          232 ----KFR-RI------------------PYRYSDELNEIITRMLNLKDYHRPSVEEILENP  269 (279)
T ss_dssp             ----CCC-CC------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred             ----ccc-cC------------------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence                000 00                  002334678999999999999999999999865

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=6.6e-38  Score=306.13  Aligned_cols=212  Identities=21%  Similarity=0.256  Sum_probs=168.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||.||+|.+..+++.||||++....   ......+.+|+.++++++||||+++              
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            46999999999999999999999999999999996542   3345779999999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe---CCCCceEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL---DNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll---~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                             ..++.||+.||.|||+++   |+||||||+|||+   +.++.+||+|||++......
T Consensus       106 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  182 (484)
T 3nyv_A          106 EVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS  182 (484)
T ss_dssp             CCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCC
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccc
Confidence                                   458999999999999999   9999999999999   56789999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH-hCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM-AFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  267 (356)
                      .     ......||+.|+|||++.+ .++.++|||||||++|+|++|.+||......  .....+.. .+.....     
T Consensus       183 ~-----~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~~~~~-----  249 (484)
T 3nyv_A          183 K-----KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEY--DILKKVEKGKYTFELP-----  249 (484)
T ss_dssp             C-----SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCCCCSG-----
T ss_pred             c-----ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHcCCCCCCCc-----
Confidence            2     1223568999999999876 6899999999999999999999999743211  11111111 0000000     


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                             .....+..+.+++.+||+.||.+|||+.++++
T Consensus       250 -----------------------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          250 -----------------------QWKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             -----------------------GGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -----------------------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence                                   00123345789999999999999999999986

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=3.8e-38  Score=288.55  Aligned_cols=215  Identities=19%  Similarity=0.255  Sum_probs=165.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++........+.+.+|+.+++.++||||+++                
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            4679999999999999999999999999999999986666667889999999999999999986                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.+++.||.|||+.+   ++||||||+||+++.++.+||+|||++......    
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----  170 (302)
T 2j7t_A           98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR---IIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT----  170 (302)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH----
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCC---cccCCCCHHHEEECCCCCEEEEECCCCcccccc----
Confidence                                  458889999999999999   999999999999999999999999997643211    


Q ss_pred             ccCCCCccccccccchhhh-----cCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          193 QSSSNGVRRTIGYTALDYD-----LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~-----~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ........||..|+|||++     .+..++.++||||||+++|+|++|..||....... ..........+.        
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~--------  241 (302)
T 2j7t_A          171 LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKSDPPT--------  241 (302)
T ss_dssp             HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCCC--------
T ss_pred             ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhccCCcc--------
Confidence            1112335689999999998     36678999999999999999999999997432110 000000000000        


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       +.                    .....+..+.+++.+||+.||++|||+.++++
T Consensus       242 -~~--------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          242 -LL--------------------TPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             -CS--------------------SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             -cC--------------------CccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence             00                    00123345789999999999999999999876

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.1e-37  Score=298.75  Aligned_cols=204  Identities=13%  Similarity=0.061  Sum_probs=158.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCC-CChH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICH-RNLV--------------  132 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~niv--------------  132 (356)
                      ...|...+.||+|+||.||+|.+..+++.||||++.....   ...+.+.+|+.+++.+.| +|..              
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            3458888999999999999999999999999999873322   235778899999999987 2211              


Q ss_pred             -------------------------------------------------------HHHHHHHHHHHHHHHHhhcCCCcEE
Q 039228          133 -------------------------------------------------------RFISIAIDVASALDYLHHHCQELIL  157 (356)
Q Consensus       133 -------------------------------------------------------~l~~i~~~i~~aL~~LH~~~~~~ii  157 (356)
                                                                             ..+.++.||+.||.|||+++   ||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ii  233 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---LV  233 (413)
T ss_dssp             EECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTT---EE
T ss_pred             cccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCC---cc
Confidence                                                                   11346689999999999999   99


Q ss_pred             ecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhh----------cCCCCCCccchHhHHH
Q 039228          158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD----------LGSEVSTNGDAYNYGI  227 (356)
Q Consensus       158 H~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~sDiwSlG~  227 (356)
                      ||||||+|||++.++.+||+|||+++.....       .....| +.|+|||++          .+..++.++|||||||
T Consensus       234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGv  305 (413)
T 3dzo_A          234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGL  305 (413)
T ss_dssp             CSCCCGGGEEECTTCCEEECCGGGCEETTEE-------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHH
T ss_pred             cCCcccceEEEecCCeEEEEeccceeecCCc-------cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHH
Confidence            9999999999999999999999998765432       233556 899999999          5566888999999999


Q ss_pred             HHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhc
Q 039228          228 LLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACS  307 (356)
Q Consensus       228 ~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl  307 (356)
                      ++|||++|+.||.......                 .....+....                    ..+..+.+|+.+||
T Consensus       306 il~elltg~~Pf~~~~~~~-----------------~~~~~~~~~~--------------------~~~~~~~~li~~~l  348 (413)
T 3dzo_A          306 AIYWIWCADLPNTDDAALG-----------------GSEWIFRSCK--------------------NIPQPVRALLEGFL  348 (413)
T ss_dssp             HHHHHHHSSCCCCTTGGGS-----------------CSGGGGSSCC--------------------CCCHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCcchhh-----------------hHHHHHhhcc--------------------cCCHHHHHHHHHHc
Confidence            9999999999997432211                 0111111000                    12245789999999


Q ss_pred             CCCcCCCCChHHHHH
Q 039228          308 MGSSQDRMNVPNAVH  322 (356)
Q Consensus       308 ~~dP~~RPs~~~vl~  322 (356)
                      +.||++||++.++++
T Consensus       349 ~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          349 RYPKEDRLLPLQAME  363 (413)
T ss_dssp             CSSGGGSCCHHHHTT
T ss_pred             cCChhhCcCHHHHHh
Confidence            999999999887754

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=6.8e-38  Score=290.88  Aligned_cols=220  Identities=19%  Similarity=0.198  Sum_probs=167.9

Q ss_pred             HHHhhcCCCCcc-ccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcC-CCChHHH-------
Q 039228           66 SLLKATDGFPLI-NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNIC-HRNLVRF-------  134 (356)
Q Consensus        66 ~~~~~~~~~~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l-------  134 (356)
                      ......+.|.+. +.||+|+||.||+|.+..+++.||+|++....  ......+.+|+.++..+. ||||+++       
T Consensus        22 ~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~  101 (327)
T 3lm5_A           22 SMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENT  101 (327)
T ss_dssp             CHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECS
T ss_pred             HHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeC
Confidence            333445568877 88999999999999999999999999997542  334567899999999995 6999986       


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEccc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDF  179 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Df  179 (356)
                                                      ..++.|++.||.|||+.+   |+||||||+||+++.   ++.+||+||
T Consensus       102 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~g---ivH~Dikp~NIl~~~~~~~~~~kL~Df  178 (327)
T 3lm5_A          102 SEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDF  178 (327)
T ss_dssp             SEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESCBTTBCCEEECCG
T ss_pred             CeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCC---eecCcCChHHEEEecCCCCCcEEEeeC
Confidence                                            568999999999999999   999999999999997   789999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      |+++......     ......||+.|+|||++.+..++.++||||||+++|+|++|..||....... ........... 
T Consensus       179 g~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~-  251 (327)
T 3lm5_A          179 GMSRKIGHAC-----ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE-TYLNISQVNVD-  251 (327)
T ss_dssp             GGCEEC--------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCC-
T ss_pred             ccccccCCcc-----ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH-HHHHHHhcccc-
Confidence            9998654322     2233578999999999999999999999999999999999999996432111 00000000000 


Q ss_pred             chHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 RVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                               ...                  .....+...+.+++.+||+.||++|||+.++++
T Consensus       252 ---------~~~------------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          252 ---------YSE------------------ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             ---------CCT------------------TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ---------cCc------------------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence                     000                  000123345789999999999999999999875

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=285.03  Aligned_cols=214  Identities=19%  Similarity=0.269  Sum_probs=165.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|.+....  ..+.+.+|+.+++.++||||+++               
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  104 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME  104 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence            4567999999999999999999999999999999997543  34678999999999999999986               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.+++.||.|||+.+   |+|+||||+||+++.++.++|+|||++.......  
T Consensus       105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~--  179 (314)
T 3com_A          105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMR---KIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM--  179 (314)
T ss_dssp             CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECBTTB--
T ss_pred             cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---CcCCCcCHHHEEECCCCCEEEeecccchhhhhhc--
Confidence                                   458899999999999999   9999999999999999999999999997654321  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                        .......|+..|+|||.+.+..++.++||||||+++|+|++|..||......  ..........+..        +. 
T Consensus       180 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~--------~~-  246 (314)
T 3com_A          180 --AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM--RAIFMIPTNPPPT--------FR-  246 (314)
T ss_dssp             --SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCCC--------CS-
T ss_pred             --cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHhcCCCcc--------cC-
Confidence              1223456899999999999999999999999999999999999999643211  0000000000000        00 


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                         ........+.+++.+||+.||.+|||+.++++
T Consensus       247 -------------------~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          247 -------------------KPELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             -------------------SGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             -------------------CcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence                               00122345789999999999999999999987

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=296.98  Aligned_cols=164  Identities=24%  Similarity=0.339  Sum_probs=125.5

Q ss_pred             CCCc-cccceecCceEEEEEEEC--CCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           73 GFPL-INLIGVGSFDAVYQGVFD--LNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        73 ~~~~-~~~lg~G~~g~Vy~~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .|.+ .++||+|+||.||+|++.  .+++.||||++...  .....+.+|+.+|+.++||||+++               
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv   98 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLL   98 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEE
T ss_pred             hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEE
Confidence            3665 457999999999999976  46789999998743  234578899999999999999976               


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe----CCCCceEEcc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL----DNDLFAHIGD  178 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll----~~~~~~kl~D  178 (356)
                                                      ..++.||+.||.|||+.+   |+||||||+|||+    +.++.+||+|
T Consensus        99 ~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~---ivH~Dlkp~NIll~~~~~~~~~~kl~D  175 (405)
T 3rgf_A           99 FDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIAD  175 (405)
T ss_dssp             EECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECCSSTTTTCEEECC
T ss_pred             EeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeCCCcCHHHeEEecCCCCCCcEEEEE
Confidence                                            347789999999999999   9999999999999    6789999999


Q ss_pred             cccccccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       179 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      ||+++........ ........||+.|+|||++.+. .++.++|||||||++|+|++|..||...
T Consensus       176 fg~a~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          176 MGFARLFNSPLKP-LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             TTCCC-----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             CCCceecCCCCcc-cccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            9999866432211 1223446789999999999874 5899999999999999999999999754

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=7e-38  Score=292.73  Aligned_cols=216  Identities=18%  Similarity=0.213  Sum_probs=164.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.++.+++.||||++......    ..+|+.++.++ +||||+++               
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E   96 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE   96 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence            45699999999999999999999999999999999755332    34688888887 79999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC----CceEEcccccccccccC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND----LFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~----~~~kl~Dfg~a~~~~~~  188 (356)
                                            ..++.+|+.||.|||+.+   |+||||||+|||+.+.    +.+||+|||+++.....
T Consensus        97 ~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~g---ivHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~  173 (342)
T 2qr7_A           97 LMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAE  173 (342)
T ss_dssp             CCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCT
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCC
Confidence                                  458899999999999999   9999999999998432    35999999999865433


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      ..    ......||+.|+|||++.+..++.++|||||||++|+|++|..||......  .....            +...
T Consensus       174 ~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~------------~~~i  235 (342)
T 2qr7_A          174 NG----LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEI------------LARI  235 (342)
T ss_dssp             TC----CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS--CHHHH------------HHHH
T ss_pred             CC----ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC--CHHHH------------HHHH
Confidence            21    223457899999999998888899999999999999999999999743221  11111            1111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..+.....        ...+    ......+.+|+.+||..||++|||+.++++.
T Consensus       236 ~~~~~~~~--------~~~~----~~~s~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          236 GSGKFSLS--------GGYW----NSVSDTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             HHCCCCCC--------STTT----TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             ccCCcccC--------cccc----ccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            11110000        0000    0233457899999999999999999998863

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.6e-37  Score=280.85  Aligned_cols=213  Identities=22%  Similarity=0.261  Sum_probs=161.7

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ..++|.+.+.||+|+||.||+|.+..+++.||||++....   ....+.+.+|+.+++.++||||+++            
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (276)
T 2h6d_A            9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFM   88 (276)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEE
Confidence            3578999999999999999999999899999999996432   2334678899999999999999986            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||.|||+.+   |+|+||||+||+++.++.++|+|||++.......
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~  165 (276)
T 2h6d_A           89 VMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE  165 (276)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHC---SSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred             EEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence                                     458899999999999999   9999999999999999999999999997654321


Q ss_pred             CCCccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                           ......+++.|+|||.+.+..+ +.++||||||+++|+|++|..||.....     .....         .+...
T Consensus       166 -----~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~---------~~~~~  226 (276)
T 2h6d_A          166 -----FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV-----PTLFK---------KIRGG  226 (276)
T ss_dssp             ----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHH---------HHHHC
T ss_pred             -----ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH-----HHHHH---------HhhcC
Confidence                 1223567899999999987765 5899999999999999999999964211     11110         00000


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .....                   ......+.+++.+||+.||.+|||+.+|++.
T Consensus       227 ~~~~~-------------------~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          227 VFYIP-------------------EYLNRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             CCCCC-------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             cccCc-------------------hhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            00000                   0123357899999999999999999999873

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=2.7e-38  Score=289.37  Aligned_cols=228  Identities=20%  Similarity=0.268  Sum_probs=150.4

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ....++|++.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|+.++++++||||+++            
T Consensus        11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   90 (303)
T 2vwi_A           11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWL   90 (303)
T ss_dssp             --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEE
T ss_pred             ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEE
Confidence            345678999999999999999999998889999999986443 2344678899999999999999986            


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                                       ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+
T Consensus        91 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~  167 (303)
T 2vwi_A           91 VMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNG---QIHRDVKAGNILLGEDGSVQIADFGV  167 (303)
T ss_dssp             EEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCCHH
T ss_pred             EehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---CCCCCCChhhEEEcCCCCEEEEeccc
Confidence                                             347789999999999999   99999999999999999999999999


Q ss_pred             ccccccCCCC-CccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC
Q 039228          182 ARFRQEVSNP-TQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN  259 (356)
Q Consensus       182 a~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~  259 (356)
                      +......... .........||+.|+|||++.+ ..++.++||||||+++|+|++|..||.......  .........+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~~~  245 (303)
T 2vwi_A          168 SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK--VLMLTLQNDPP  245 (303)
T ss_dssp             HHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG--HHHHHHTSSCC
T ss_pred             hheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh--HHHHHhccCCC
Confidence            9765432211 1122334678999999999865 568999999999999999999999997532221  11111111111


Q ss_pred             chH-HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          260 RVM-DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       260 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ... ...+..+..                      .....+.+++.+||+.||.+|||+.++++
T Consensus       246 ~~~~~~~~~~~~~----------------------~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          246 SLETGVQDKEMLK----------------------KYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             CTTC-----CCCC----------------------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccccccccchhhh----------------------hhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            100 001111100                      22335789999999999999999999986

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=4.6e-37  Score=301.68  Aligned_cols=214  Identities=19%  Similarity=0.213  Sum_probs=165.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-------------cchHHHHHHHHHHhhcCCCChHHH---
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-------------GASKSFMAECKALKNICHRNLVRF---  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l---  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++.....             ...+.+.+|+.++++++||||+++   
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            5679999999999999999999999999999999975421             234678899999999999999987   


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC---ceEEc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL---FAHIG  177 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~---~~kl~  177 (356)
                                                        ..++.||+.||.|||+.+   |+||||||+|||++.++   .+||+
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~  191 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIV  191 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESSTTCCSSEEEC
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---eEeCCCcHHHEEEecCCCCccEEEE
Confidence                                              458899999999999999   99999999999998766   69999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHH-h
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM-A  256 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~-~  256 (356)
                      |||++.......     ......||+.|+|||++. ..++.++|||||||++|+|++|..||......  .+...... .
T Consensus       192 Dfg~a~~~~~~~-----~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~  263 (504)
T 3q5i_A          192 DFGLSSFFSKDY-----KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ--DIIKKVEKGK  263 (504)
T ss_dssp             CCTTCEECCTTS-----CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC
T ss_pred             ECCCCEEcCCCC-----ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcCC
Confidence            999998654322     223456899999999986 46899999999999999999999999743211  11111111 0


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      +......                            ....+..+.+|+.+||..||.+|||+.++++.
T Consensus       264 ~~~~~~~----------------------------~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          264 YYFDFND----------------------------WKNISDEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             CCCCHHH----------------------------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             CCCCccc----------------------------cCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            0000000                            01223457899999999999999999999863

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=3e-37  Score=290.93  Aligned_cols=241  Identities=19%  Similarity=0.219  Sum_probs=168.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-----------CCChHHH-----
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-----------HRNLVRF-----  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l-----  134 (356)
                      .++|.+.+.||+|+||.||+|.+..+++.||||++... ......+.+|+.++++++           ||||+++     
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            46799999999999999999999999999999998743 233467888999998886           7888865     


Q ss_pred             -------------------------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeC------C
Q 039228          135 -------------------------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLD------N  170 (356)
Q Consensus       135 -------------------------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~------~  170 (356)
                                                           ..++.||+.||.|||++ +   |+||||||+|||++      .
T Consensus        97 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~---ivH~Dikp~NIll~~~~~~~~  173 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPEN  173 (373)
T ss_dssp             EEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTT
T ss_pred             ccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCC---EEecCCChHHeEEeccCCCcC
Confidence                                                 45889999999999998 8   99999999999994      4


Q ss_pred             CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC----
Q 039228          171 DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD----  246 (356)
Q Consensus       171 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~----  246 (356)
                      .+.+||+|||++......       .....||+.|+|||++.+..++.++|||||||++|||++|..||.......    
T Consensus       174 ~~~~kl~Dfg~a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~  246 (373)
T 1q8y_A          174 LIQIKIADLGNACWYDEH-------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD  246 (373)
T ss_dssp             EEEEEECCCTTCEETTBC-------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred             cceEEEcccccccccCCC-------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence            458999999999865432       223567999999999999999999999999999999999999997543211    


Q ss_pred             -ccHHHHHHHhC--CCchHH-------Hhhhh-hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC
Q 039228          247 -LNLHNFARMAF--PNRVMD-------IVNLV-LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM  315 (356)
Q Consensus       247 -~~~~~~~~~~~--~~~~~~-------~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP  315 (356)
                       ..+.......-  +.....       +.+.. ................-.........+...+.+|+.+||+.||++||
T Consensus       247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  326 (373)
T 1q8y_A          247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA  326 (373)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred             HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence             11111111111  100000       00000 00000000000000000011112246677899999999999999999


Q ss_pred             ChHHHHH
Q 039228          316 NVPNAVH  322 (356)
Q Consensus       316 s~~~vl~  322 (356)
                      |+.+|++
T Consensus       327 t~~ell~  333 (373)
T 1q8y_A          327 DAGGLVN  333 (373)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHhh
Confidence            9999987

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.6e-37  Score=301.71  Aligned_cols=214  Identities=20%  Similarity=0.254  Sum_probs=163.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      +.|++.+.||+|+||.||+|++..++..||+|++....  ......+.+|+.+++.++||||+++               
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            45999999999999999999999999999999997543  2335678999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEcccccccccccCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a~~~~~~~  189 (356)
                                            ..++.||+.||.|||+.+   |+||||||+|||++.   ++.+||+|||++.......
T Consensus       117 ~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~  193 (494)
T 3lij_A          117 CYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK  193 (494)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc
Confidence                                  458899999999999999   999999999999976   4559999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                           ......||+.|+|||++. ..++.++|||||||++|+|++|..||......  .+.......           ..
T Consensus       194 -----~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~-----------~~  254 (494)
T 3lij_A          194 -----KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--EILRKVEKG-----------KY  254 (494)
T ss_dssp             -----CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHT-----------CC
T ss_pred             -----cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhC-----------CC
Confidence                 223467899999999986 56999999999999999999999999743211  111111110           00


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ....            ..+    ...+..+.+++.+||+.||.+|||+.++++.
T Consensus       255 ~~~~------------~~~----~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          255 TFDS------------PEW----KNVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             CCCS------------GGG----TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             CCCc------------hhc----ccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence            0000            000    0223457899999999999999999999863

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=8.3e-38  Score=294.56  Aligned_cols=218  Identities=15%  Similarity=0.099  Sum_probs=169.9

Q ss_pred             hhcCCCCccccceecCceEEEEEE-----ECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC---CCChHHH------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGV-----FDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC---HRNLVRF------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~-----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l------  134 (356)
                      ...++|.+.+.||+|+||.||+|.     ...+++.||||++...   ....+..|+.++..++   |+||+++      
T Consensus        62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~  138 (365)
T 3e7e_A           62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF  138 (365)
T ss_dssp             CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred             ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence            345779999999999999999994     5667899999998743   3456778888888887   8998876      


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC--------
Q 039228          135 ------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN--------  170 (356)
Q Consensus       135 ------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~--------  170 (356)
                                                          +.++.||+.||.|||+.+   ||||||||+|||++.        
T Consensus       139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~---ivHrDiKp~NIll~~~~~~~~~~  215 (365)
T 3e7e_A          139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE---IIHGDIKPDNFILGNGFLEQDDE  215 (365)
T ss_dssp             SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCSGGGEEECGGGTCC---
T ss_pred             CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCC---eecCCCCHHHEEecccccCcccc
Confidence                                                458899999999999999   999999999999998        


Q ss_pred             ---CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCc
Q 039228          171 ---DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL  247 (356)
Q Consensus       171 ---~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~  247 (356)
                         ++.+||+|||+++.+.....  ........||+.|+|||++.+..++.++|||||||++|||+||+.||.....+..
T Consensus       216 ~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~  293 (365)
T 3e7e_A          216 DDLSAGLALIDLGQSIDMKLFPK--GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC  293 (365)
T ss_dssp             ---CTTEEECCCTTCEEGGGSCT--TEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE
T ss_pred             ccccCCEEEeeCchhhhhhccCC--CceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce
Confidence               89999999999976543222  2233446789999999999999999999999999999999999999864322110


Q ss_pred             cHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCC-CChHHHHHHHHH
Q 039228          248 NLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDR-MNVPNAVHDLQS  326 (356)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~R-Ps~~~vl~~L~~  326 (356)
                      .                +...+...                     .....+.+++..|++.+|.+| |++.++.+.|+.
T Consensus       294 ~----------------~~~~~~~~---------------------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~  336 (365)
T 3e7e_A          294 K----------------PEGLFRRL---------------------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKK  336 (365)
T ss_dssp             E----------------ECSCCTTC---------------------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHH
T ss_pred             e----------------echhcccc---------------------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Confidence            0                00000000                     012245689999999999999 578999999998


Q ss_pred             hhhhh
Q 039228          327 VNNIL  331 (356)
Q Consensus       327 i~~~~  331 (356)
                      +.+..
T Consensus       337 ~l~~~  341 (365)
T 3e7e_A          337 VFQQH  341 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87664

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.8e-38  Score=289.36  Aligned_cols=218  Identities=21%  Similarity=0.264  Sum_probs=164.0

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH----------
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF----------  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l----------  134 (356)
                      .+....++|++.+.||+|+||.||+|.+..+++.||||++.... .....+.+|+.+++++ +||||+++          
T Consensus        18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~   96 (326)
T 2x7f_A           18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP   96 (326)
T ss_dssp             CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred             hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence            34456788999999999999999999999899999999997543 3346788999999999 79999875          


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                         ..++.||+.||.|||+.+   |+|+||||+||+++.++.+||+||
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---ivH~dlkp~NIl~~~~~~~kl~Df  173 (326)
T 2x7f_A           97 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDF  173 (326)
T ss_dssp             CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEECTTCCEEECCC
T ss_pred             cccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ccccCCcHHHEEEcCCCCEEEeeC
Confidence                                               457889999999999999   999999999999999999999999


Q ss_pred             ccccccccCCCCCccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHH
Q 039228          180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       180 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~  254 (356)
                      |++.......    .......|++.|+|||++.     +..++.++||||||+++|+|++|..||......  .......
T Consensus       174 g~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~  247 (326)
T 2x7f_A          174 GVSAQLDRTV----GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM--RALFLIP  247 (326)
T ss_dssp             TTTC-----------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHH
T ss_pred             cCceecCcCc----cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHhh
Confidence            9997654321    1223456899999999987     566889999999999999999999999643211  0000000


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....        +.+..                     ...+..+.+++.+||..||.+|||+.++++
T Consensus       248 ~~~~--------~~~~~---------------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          248 RNPA--------PRLKS---------------------KKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             HSCC--------CCCSC---------------------SCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             cCcc--------ccCCc---------------------cccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            0000        00000                     022336789999999999999999999987

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=4.2e-37  Score=285.55  Aligned_cols=240  Identities=15%  Similarity=0.161  Sum_probs=168.5

Q ss_pred             cCCCCccccceecCceEEEEEEE-CCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCC------hHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVF-DLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRN------LVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l---------  134 (356)
                      .++|++.+.||+|+||.||+|.+ ..+++.||||++... ....+.+.+|+.+++.++|++      ++++         
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~   91 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH   91 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence            46899999999999999999998 557899999998743 234567888999999887665      5543         


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---------------
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---------------  170 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---------------  170 (356)
                                                   ..++.|++.||.|||+++   |+||||||+|||++.               
T Consensus        92 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~  168 (339)
T 1z57_A           92 ICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK---LTHTDLKPENILFVQSDYTEAYNPKIKRDE  168 (339)
T ss_dssp             EEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESCCCEEEEEC----CEE
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeccccccccCCcccccc
Confidence                                         468899999999999999   999999999999987               


Q ss_pred             ----CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC
Q 039228          171 ----DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD  246 (356)
Q Consensus       171 ----~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~  246 (356)
                          ++.+||+|||++.....       ......||+.|+|||++.+..++.++|||||||++|||++|..||...... 
T Consensus       169 ~~~~~~~~kl~Dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-  240 (339)
T 1z57_A          169 RTLINPDIKVVDFGSATYDDE-------HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK-  240 (339)
T ss_dssp             EEESCCCEEECCCSSCEETTS-------CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH-
T ss_pred             ccccCCCceEeeCcccccCcc-------ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH-
Confidence                66899999999975432       123456899999999999999999999999999999999999999753221 


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhcccc-ccccccccch------hh------hhchhhHHHHHHHHHHHHHhhcCCCcCC
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDN-KVLAGTNSNM------LR------KTKMNSRLECLIFMVRIGAACSMGSSQD  313 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~------~~------~~~~~~~~~~~~~l~~l~~~Cl~~dP~~  313 (356)
                       ................+......... ..........      ..      .........+...+.+|+.+||+.||.+
T Consensus       241 -~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  319 (339)
T 1z57_A          241 -EHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK  319 (339)
T ss_dssp             -HHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred             -HHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence             11111111111100111100000000 0000000000      00      0000011245677899999999999999


Q ss_pred             CCChHHHHHH
Q 039228          314 RMNVPNAVHD  323 (356)
Q Consensus       314 RPs~~~vl~~  323 (356)
                      |||+.+|++.
T Consensus       320 Rpt~~ell~h  329 (339)
T 1z57_A          320 RITLREALKH  329 (339)
T ss_dssp             SCCHHHHTTS
T ss_pred             ccCHHHHhcC
Confidence            9999999853

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=3e-37  Score=279.94  Aligned_cols=206  Identities=17%  Similarity=0.200  Sum_probs=162.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....  ......+.+|+..+..+ +||||+++             
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            456999999999999999999999999999999997542  33456788999999999 89999986             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC----------------
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN----------------  170 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~----------------  170 (356)
                                                  ..++.||+.||.|||+++   |+||||||+||+++.                
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~  166 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMS---LVHMDIKPSNIFISRTSIPNAASEEGDEDDW  166 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEC-----------------
T ss_pred             EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCC---EeecCCCHHHEEEcCCCCCcccccccccccc
Confidence                                        458899999999999999   999999999999984                


Q ss_pred             ---CCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCC
Q 039228          171 ---DLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD  246 (356)
Q Consensus       171 ---~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~  246 (356)
                         ...+||+|||.+......        ....||..|+|||.+.+. .++.++||||||+++|+|++|.+|+...    
T Consensus       167 ~~~~~~~kl~Dfg~~~~~~~~--------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----  234 (289)
T 1x8b_A          167 ASNKVMFKIGDLGHVTRISSP--------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----  234 (289)
T ss_dssp             ---CCCEEECCCTTCEETTCS--------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----
T ss_pred             cCCceEEEEcccccccccCCc--------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----
Confidence               447999999999765432        124589999999999776 5668999999999999999999876421    


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...........+             ...                  ......+.+++.+||+.||++|||+.++++
T Consensus       235 ~~~~~~~~~~~~-------------~~~------------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          235 DQWHEIRQGRLP-------------RIP------------------QVLSQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             HHHHHHHTTCCC-------------CCS------------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hHHHHHHcCCCC-------------CCC------------------cccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence            111111111000             000                  022335789999999999999999999975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=3e-37  Score=312.32  Aligned_cols=208  Identities=20%  Similarity=0.209  Sum_probs=166.1

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhc-CCCChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNI-CHRNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l-----------  134 (356)
                      ..++|++++.||+|+||.||+|++..+++.||||+++..   .....+.+..|..++..+ +||||+++           
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            457899999999999999999999999999999999743   233456788899999987 68999876           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.||+.||.|||+.+   ||||||||+||||+.++.+||+|||+++.....
T Consensus       419 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~g---IiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~  495 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWD  495 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTS---EECCCCCSTTEEECSSSCEEECCCTTCEECCCT
T ss_pred             EEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC---eEeccCChhhEEEcCCCcEEEeecceeeccccC
Confidence                                      458899999999999999   999999999999999999999999999854322


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .    .......||+.|+|||++.+..++.++|||||||++|||++|..||.....     ...            +...
T Consensus       496 ~----~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~-----~~~------------~~~i  554 (674)
T 3pfq_A          496 G----VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE-----DEL------------FQSI  554 (674)
T ss_dssp             T----CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH------------HHHH
T ss_pred             C----cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH-----HHH------------HHHH
Confidence            1    223457899999999999999999999999999999999999999974221     111            1111


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      +......                +......+.+|+.+||+.||++||++
T Consensus       555 ~~~~~~~----------------p~~~s~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          555 MEHNVAY----------------PKSMSKEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             HSSCCCC----------------CTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred             HhCCCCC----------------CccCCHHHHHHHHHHccCCHHHCCCC
Confidence            1111000                00223357899999999999999997

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=8.3e-37  Score=279.12  Aligned_cols=216  Identities=16%  Similarity=0.199  Sum_probs=168.4

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---------cchHHHHHHHHHHhhcC-CCChHHH-----
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---------GASKSFMAECKALKNIC-HRNLVRF-----  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~niv~l-----  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+++.||||++.....         ...+.+.+|+.+++++. ||||+++     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            45789999999999999999999999999999999975431         22356789999999996 9999987     


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELA  182 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a  182 (356)
                                                      ..++.+++.||.|||+.+   |+|+||||+||+++.++.+||+|||++
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dl~p~Nil~~~~~~~kl~dfg~~  171 (298)
T 1phk_A           95 TNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFS  171 (298)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             cCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCcceEEEcCCCcEEEecccch
Confidence                                            568899999999999999   999999999999999999999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhc------CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDL------GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      .......     ......+++.|+|||++.      ...++.++||||||+++|+|++|..||.....  .......   
T Consensus       172 ~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~---  241 (298)
T 1phk_A          172 CQLDPGE-----KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--MLMLRMI---  241 (298)
T ss_dssp             EECCTTC-----CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHH---
T ss_pred             hhcCCCc-----ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH--HHHHHHH---
Confidence            7654322     223456899999999885      45688999999999999999999999964221  1111110   


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                              .........                ......+..+.+++.+||+.||.+|||+.++++
T Consensus       242 --------~~~~~~~~~----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          242 --------MSGNYQFGS----------------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             --------HHTCCCCCT----------------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             --------hcCCcccCc----------------ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence                    000000000                000123346789999999999999999999875

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-37  Score=292.37  Aligned_cols=219  Identities=22%  Similarity=0.252  Sum_probs=165.6

Q ss_pred             cCCCCccccceecCceEEEEEEEC---CCCeEEEEEEeeccC----ccchHHHHHHHHHHhhc-CCCChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFD---LNRAVVAIKVLSIQC----QGASKSFMAECKALKNI-CHRNLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l--------  134 (356)
                      .++|++.+.||+|+||.||+|+..   .+++.||||+++...    ....+.+.+|+.+++.+ +||||+++        
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            467999999999999999999984   478999999986432    22345677899999999 69999986        


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                   ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++..
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence                                         457889999999999999   999999999999999999999999999865


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ....   ........||+.|+|||++.+  ..++.++|||||||++|||++|..||....... .......         
T Consensus       210 ~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~~~~~---------  276 (355)
T 1vzo_A          210 VADE---TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN-SQAEISR---------  276 (355)
T ss_dssp             CGGG---GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-CHHHHHH---------
T ss_pred             ccCC---CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc-hHHHHHH---------
Confidence            3322   122334678999999999986  347889999999999999999999997433221 1111111         


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVHDL  324 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~~L  324 (356)
                         ..+.....                ........+.+|+.+||..||.+||     ++.++++..
T Consensus       277 ---~~~~~~~~----------------~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~  323 (355)
T 1vzo_A          277 ---RILKSEPP----------------YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL  323 (355)
T ss_dssp             ---HHHHCCCC----------------CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             ---HHhccCCC----------------CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence               11100000                0012233578999999999999999     888887643

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=5.2e-37  Score=284.02  Aligned_cols=239  Identities=23%  Similarity=0.260  Sum_probs=168.5

Q ss_pred             hcCCCCccccceecCceEEEEEEEC-CCCeEEEEEEeeccCc--cchHHHHHHHHHHhhc---CCCChHHH---------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFD-LNRAVVAIKVLSIQCQ--GASKSFMAECKALKNI---CHRNLVRF---------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l---------  134 (356)
                      ..++|++.+.||+|+||.||+|.+. .+++.||+|++.....  .....+.+|+.+++.+   +||||+++         
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            4578999999999999999999995 6789999999864322  2234566788777766   89999975         


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          135 ----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       135 ----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                                                        ..++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||
T Consensus        89 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~g---i~H~dlkp~Nili~~~~~~kl~Dfg  165 (326)
T 1blx_A           89 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFG  165 (326)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCC
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCC---ceeccCCHHHeEEcCCCCEEEecCc
Confidence                                              458889999999999999   9999999999999999999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ++......     .......||..|+|||++.+..++.++||||||+++|+|++|+.||....... .+...........
T Consensus       166 ~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~  239 (326)
T 1blx_A          166 LARIYSFQ-----MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPG  239 (326)
T ss_dssp             SCCCCCGG-----GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCC
T ss_pred             ccccccCC-----CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHcCCCC
Confidence            99765322     12234667999999999999999999999999999999999999997532211 1111111111000


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...+........... ...........    .......+.+|+.+||+.||.+|||+.++++
T Consensus       240 ~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          240 EEDWPRDVALPRQAF-HSKSAQPIEKF----VTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             GGGSCTTCSSCGGGS-CCCCCCCGGGT----CCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cccCccccccchhhh-cccCcchhhhc----cccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            000000000000000 00000000000    0123446789999999999999999999985

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=8.4e-38  Score=289.89  Aligned_cols=217  Identities=19%  Similarity=0.217  Sum_probs=146.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHH-HHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECK-ALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~-~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++..... .....+..|+. +++.++||||+++              
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            4789999999999999999999999999999999975432 23345666666 7778899999986              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                 ..++.+++.||.|||+. +   |+||||||+||+++.++.+||+|||++....
T Consensus       101 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~---ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  177 (327)
T 3aln_A          101 ELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLK---IIHRDIKPSNILLDRSGNIKLCDFGISGQLV  177 (327)
T ss_dssp             CCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHS---CCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred             eecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCC---EeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence                                       35788999999999998 8   9999999999999999999999999997654


Q ss_pred             cCCCCCccCCCCccccccccchhhh----cCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYD----LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ...     ......||+.|+|||++    .+..++.++||||||+++|+|++|..||.......    ........... 
T Consensus       178 ~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~~~~~~~~~-  247 (327)
T 3aln_A          178 DSI-----AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF----DQLTQVVKGDP-  247 (327)
T ss_dssp             ---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSCC-
T ss_pred             ccc-----ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH----HHHHHHhcCCC-
Confidence            321     12234689999999998    45678999999999999999999999997432110    00000000000 


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          +.+....                  ...+...+.+++.+||+.||++|||+.+|++
T Consensus       248 ----~~~~~~~------------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          248 ----PQLSNSE------------------EREFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             ----CCCCCCS------------------SCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ----CCCCCcc------------------cccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence                0000000                  0023346789999999999999999999976

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=2.8e-36  Score=285.93  Aligned_cols=163  Identities=26%  Similarity=0.305  Sum_probs=137.2

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCC-----hHHH--------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRN-----LVRF--------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n-----iv~l--------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..+++.||||++... ......+..|+.+++.++ |+|     |+++        
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            3467899999999999999999999999999999999743 233466778898888885 554     4432        


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhh--cCCCcEEecCCCCCCeEeC--CCCceEEcccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHH--HCQELILHCDPKPSNVLLD--NDLFAHIGDFE  180 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~--~~~~~iiH~Dlkp~NIll~--~~~~~kl~Dfg  180 (356)
                                                    ..++.|++.||.|||.  .+   |+||||||+|||++  .++.+||+|||
T Consensus       130 ~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~---ivHrDlkp~NIll~~~~~~~~kL~DFG  206 (382)
T 2vx3_A          130 HLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELS---IIHCDLKPENILLCNPKRSAIKIVDFG  206 (382)
T ss_dssp             EEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTC---EECCCCSGGGEEESSTTSCCEEECCCT
T ss_pred             ceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCC---EEcCCCCcccEEEecCCCCcEEEEecc
Confidence                                          4588999999999994  56   99999999999994  57889999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                      +++.....       .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus       207 ~a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          207 SSCQLGQR-------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             TCEETTCC-------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             Cceecccc-------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99865321       23467899999999999999999999999999999999999999753

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=7.4e-38  Score=288.49  Aligned_cols=222  Identities=19%  Similarity=0.268  Sum_probs=163.4

Q ss_pred             HHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcC--CCChHHH------
Q 039228           65 ESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNIC--HRNLVRF------  134 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l------  134 (356)
                      ..+....++|++.+.||+|+||.||+|.+.. ++.||||++....  ....+.+.+|+.++.+++  ||||+++      
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~   99 (313)
T 3cek_A           21 QSMSVKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT   99 (313)
T ss_dssp             CEEEETTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC
T ss_pred             eeeeeccceEEEEEEecCCCCEEEEEEEcCC-CcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec
Confidence            3334456679999999999999999999864 7899999997543  234567889999999998  4999876      


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                                    ..++.|++.||.|||+.+   |+||||||+||++++ +.+||+|||++..
T Consensus       100 ~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~  175 (313)
T 3cek_A          100 DQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG---IVHSDLKPANFLIVD-GMLKLIDFGIANQ  175 (313)
T ss_dssp             SSEEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEEET-TEEEECCCSSSCC
T ss_pred             CCEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---ceecCCCcccEEEEC-CeEEEeecccccc
Confidence                                          458899999999999999   999999999999974 8999999999986


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcC-----------CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHH
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLG-----------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~  253 (356)
                      ......  ........|++.|+|||.+.+           ..++.++||||||+++|+|++|..||.........+    
T Consensus       176 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~----  249 (313)
T 3cek_A          176 MQPDTT--SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKL----  249 (313)
T ss_dssp             ----------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHH----
T ss_pred             ccCccc--cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHH----
Confidence            543221  112234568999999999875           468889999999999999999999996432211111    


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                              ..+++.........                  .....+.+++.+||+.||.+|||+.++++.
T Consensus       250 --------~~~~~~~~~~~~~~------------------~~~~~l~~li~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          250 --------HAIIDPNHEIEFPD------------------IPEKDLQDVLKCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             --------HHHHCTTSCCCCCC------------------CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             --------HHHHhcccccCCcc------------------cchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence                    11111111111100                  112357899999999999999999999874

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=4.1e-37  Score=310.45  Aligned_cols=223  Identities=19%  Similarity=0.280  Sum_probs=172.0

Q ss_pred             hcCCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ..++|++.+.||+|+||.||+|.+..+   +..||+|.+.... ....+.+.+|+.++++++||||+++           
T Consensus       388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~l  467 (656)
T 2j0j_A          388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWI  467 (656)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEE
Confidence            446789999999999999999998643   4689999987543 2334678999999999999999986           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.|++.||.|||+++   |+||||||+|||++.++.+||+|||+++.....
T Consensus       468 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~g---ivHrDikp~NILl~~~~~vkL~DFG~a~~~~~~  544 (656)
T 2j0j_A          468 IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS  544 (656)
T ss_dssp             EEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-
T ss_pred             EEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccccchHhEEEeCCCCEEEEecCCCeecCCC
Confidence                                      457889999999999999   999999999999999999999999999865432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..   .......+|+.|+|||++.+..++.++||||||+++|||++ |..||......  .........           
T Consensus       545 ~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~~i~~~-----------  608 (656)
T 2j0j_A          545 TY---YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENG-----------  608 (656)
T ss_dssp             ------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHHT-----------
T ss_pred             cc---eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHcC-----------
Confidence            21   12223456788999999998899999999999999999997 99999743211  111111100           


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      . ....                  +..++..+.+++.+||+.||.+|||+.+|++.|+.+.+.
T Consensus       609 ~-~~~~------------------~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~  652 (656)
T 2j0j_A          609 E-RLPM------------------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  652 (656)
T ss_dssp             C-CCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C-CCCC------------------CccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence            0 0000                  013344678999999999999999999999999998653

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.6e-36  Score=283.60  Aligned_cols=161  Identities=22%  Similarity=0.311  Sum_probs=137.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC-eEEEEEEeeccCccchHHHHHHHHHHhhcCCCC------hHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR-AVVAIKVLSIQCQGASKSFMAECKALKNICHRN------LVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l---------  134 (356)
                      .++|++.+.||+|+||.||+|.+..++ +.||+|+++.. ....+.+.+|+.+++.++|++      ++.+         
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH   96 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence            468999999999999999999998766 79999998743 234467888999999987765      4432         


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEe-----------------
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLL-----------------  168 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll-----------------  168 (356)
                                                   ..++.||+.||.|||+.+   |+||||||+|||+                 
T Consensus        97 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~---ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~  173 (355)
T 2eu9_A           97 MCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ---LTHTDLKPENILFVNSEFETLYNEHKSCEE  173 (355)
T ss_dssp             EEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEESCCCEEEEECCC-CCCE
T ss_pred             EEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCC---cccCCCCHHHEEEecccccccccccccccc
Confidence                                         568899999999999999   9999999999999                 


Q ss_pred             --CCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          169 --DNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       169 --~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                        +.++.+||+|||+++....       ......||+.|+|||++.+..++.++|||||||++|||++|..||...
T Consensus       174 ~~~~~~~~kl~Dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (355)
T 2eu9_A          174 KSVKNTSIRVADFGSATFDHE-------HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH  242 (355)
T ss_dssp             EEESCCCEEECCCTTCEETTS-------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccCCCcEEEeecCccccccc-------cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence              5678999999999975432       123457899999999999999999999999999999999999999753

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=2.7e-37  Score=285.97  Aligned_cols=206  Identities=20%  Similarity=0.231  Sum_probs=164.8

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc------chHHHHHHHHHHhhcC--CCChHHH------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG------ASKSFMAECKALKNIC--HRNLVRF------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~l------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..+++.||||++......      ....+.+|+.++++++  ||||+++      
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~  119 (320)
T 3a99_A           40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER  119 (320)
T ss_dssp             CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred             CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence            4567899999999999999999999999999999999754321      2245678999999996  5999876      


Q ss_pred             --------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEccccc
Q 039228          135 --------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFEL  181 (356)
Q Consensus       135 --------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~  181 (356)
                                                      ..++.|++.||.|||+.+   |+||||||+|||++ .++.+||+|||+
T Consensus       120 ~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---ivH~Dlkp~NIll~~~~~~~kL~Dfg~  196 (320)
T 3a99_A          120 PDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGS  196 (320)
T ss_dssp             SSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred             CCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---cEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence                                            458889999999999999   99999999999999 789999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      +......      ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||....       ..        
T Consensus       197 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~--------  255 (320)
T 3a99_A          197 GALLKDT------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EI--------  255 (320)
T ss_dssp             CEECCSS------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HH--------
T ss_pred             ccccccc------cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hh--------
Confidence            9865432      1223568999999999887665 678899999999999999999996321       10        


Q ss_pred             hHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 VMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          ......  ..                  ...+..+.+++.+||+.||++|||+.+|++
T Consensus       256 ----~~~~~~--~~------------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          256 ----IRGQVF--FR------------------QRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             ----HHCCCC--CS------------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ----hccccc--cc------------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                000000  00                  012235789999999999999999999986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.1e-36  Score=277.13  Aligned_cols=214  Identities=20%  Similarity=0.241  Sum_probs=167.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||+|++....  ......+.+|+.++++++||||+++              
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            457999999999999999999999899999999997542  2345788999999999999999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC---CceEEcccccccccccC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND---LFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~---~~~kl~Dfg~a~~~~~~  188 (356)
                                             ..++.+++.||.|||+.+   |+||||||+||+++.+   +.+||+|||++......
T Consensus       101 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~  177 (287)
T 2wei_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN  177 (287)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCC
T ss_pred             EccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeccCCChhhEEEecCCCcccEEEeccCcceeecCC
Confidence                                   558899999999999999   9999999999999754   47999999999765432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .     ......+++.|+|||.+.+ .++.++||||||+++|+|++|..||......  ........           ..
T Consensus       178 ~-----~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~-----------~~  238 (287)
T 2wei_A          178 T-----KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEY--DILKRVET-----------GK  238 (287)
T ss_dssp             S-----SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHH-----------CC
T ss_pred             C-----ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHc-----------CC
Confidence            1     2233568999999999876 4899999999999999999999999743211  11111100           00


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ......                .....+..+.+++.+||+.||.+|||+.++++
T Consensus       239 ~~~~~~----------------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          239 YAFDLP----------------QWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             CCCCSG----------------GGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCch----------------hhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence            000000                00122345789999999999999999999987

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=1.4e-36  Score=292.78  Aligned_cols=216  Identities=20%  Similarity=0.228  Sum_probs=156.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l----------------  134 (356)
                      +.|.+.+.||+|+||+||.+.. .+++.||||++...   ..+.+.+|+.+++++ +||||+++                
T Consensus        15 ~~~~~~~~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~   90 (434)
T 2rio_A           15 NLVVSEKILGYGSSGTVVFQGS-FQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALEL   90 (434)
T ss_dssp             SCEEEEEEEEECSTTCEEEEEE-SSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred             heeeccCeEeeCCCeEEEEEEE-ECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEec
Confidence            3455678899999999987544 46799999998743   245678899999876 89999986                


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-------------Cce
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-------------LFA  174 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-------------~~~  174 (356)
                                                 +.++.||+.||.|||+.+   |+||||||+|||++.+             +.+
T Consensus        91 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~  167 (434)
T 2rio_A           91 CNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRI  167 (434)
T ss_dssp             CSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred             CCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCC---ccccCCChHhEEEecCcccccccccCCCceEE
Confidence                                       238899999999999999   9999999999999654             489


Q ss_pred             EEcccccccccccCCCCCccCCCCccccccccchhhhcC-------CCCCCccchHhHHHHHHHHHc-CCCCCCccccCC
Q 039228          175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG-------SEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGD  246 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~  246 (356)
                      ||+|||+++.................||+.|+|||++.+       ..++.++|||||||++|||++ |..||.......
T Consensus       168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~  247 (434)
T 2rio_A          168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE  247 (434)
T ss_dssp             EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred             EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH
Confidence            999999998765433222222345679999999999976       568999999999999999999 999996432111


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                         ............       +.                  ..........+.+++.+||+.||.+|||+.+|++
T Consensus       248 ---~~i~~~~~~~~~-------~~------------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          248 ---SNIIRGIFSLDE-------MK------------------CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             ---HHHHHTCCCCCC-------CT------------------TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---HHHhcCCCCccc-------cc------------------ccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence               111111110000       00                  0001245567889999999999999999999985

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.2e-37  Score=281.27  Aligned_cols=208  Identities=21%  Similarity=0.217  Sum_probs=161.3

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc------chHHHHHHHHHHhhc----CCCChHHH--
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG------ASKSFMAECKALKNI----CHRNLVRF--  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~niv~l--  134 (356)
                      .....++|++.+.||+|+||.||+|.+..+++.||||++......      ....+.+|+.++.++    +||||+++  
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~  105 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD  105 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence            344567899999999999999999999989999999999654321      223456799999988    89999986  


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEc
Q 039228          135 ------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIG  177 (356)
Q Consensus       135 ------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~  177 (356)
                                                          +.++.|++.||.|||+.+   |+||||||+||+++ .++.+||+
T Consensus       106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~kl~  182 (312)
T 2iwi_A          106 WFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLI  182 (312)
T ss_dssp             EC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHT---EECCCCSGGGEEEETTTTEEEEC
T ss_pred             EEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecCCChhhEEEeCCCCeEEEE
Confidence                                                458899999999999999   99999999999999 89999999


Q ss_pred             ccccccccccCCCCCccCCCCccccccccchhhhcCCCCC-CccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh
Q 039228          178 DFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS-TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       178 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      |||++......      ......|+..|+|||++.+..+. .++||||||+++|+|++|+.||....       .     
T Consensus       183 dfg~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~-----  244 (312)
T 2iwi_A          183 DFGSGALLHDE------PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------E-----  244 (312)
T ss_dssp             CCSSCEECCSS------CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------H-----
T ss_pred             EcchhhhcccC------cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------H-----
Confidence            99999865432      12345689999999998876664 48999999999999999999996321       1     


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                             +......  ..                  ......+.+++.+||+.||++|||+.++++
T Consensus       245 -------~~~~~~~--~~------------------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          245 -------ILEAELH--FP------------------AHVSPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             -------HHHTCCC--CC------------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -------HhhhccC--Cc------------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                   1111000  00                  022335789999999999999999999986

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.4e-36  Score=283.83  Aligned_cols=225  Identities=18%  Similarity=0.221  Sum_probs=167.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccc-----------------hHHHHHHHHHHhhcCCCChHH
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGA-----------------SKSFMAECKALKNICHRNLVR  133 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~h~niv~  133 (356)
                      .++|.+.+.||+|+||.||+|.+  +++.||||++.......                 .+.+.+|+.++++++||||++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~  107 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT  107 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence            57899999999999999999999  68999999997432111                 178999999999999999998


Q ss_pred             H---------------------------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeE
Q 039228          134 F---------------------------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVL  167 (356)
Q Consensus       134 l---------------------------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIl  167 (356)
                      +                                             ..++.|++.||.|||+ .+   |+||||||+||+
T Consensus       108 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~---i~H~dl~p~Nil  184 (348)
T 2pml_X          108 CEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN---ICHRDVKPSNIL  184 (348)
T ss_dssp             CSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSC---EECCCCCGGGEE
T ss_pred             EEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCC---EeecCCChHhEE
Confidence            6                                             4588999999999999 88   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCC-CCCC-ccchHhHHHHHHHHHcCCCCCCccccC
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVST-NGDAYNYGILLLEMVTRRKPIDFMFEG  245 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~sDiwSlG~~l~elltg~~Pf~~~~~~  245 (356)
                      ++.++.++|+|||++......      ......|+..|+|||.+.+. .++. ++||||||+++|+|++|..||......
T Consensus       185 ~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  258 (348)
T 2pml_X          185 MDKNGRVKLSDFGESEYMVDK------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL  258 (348)
T ss_dssp             ECTTSCEEECCCTTCEECBTT------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS
T ss_pred             EcCCCcEEEeccccccccccc------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH
Confidence            999999999999999865332      22345689999999999877 6666 999999999999999999999753321


Q ss_pred             CccHHHHHHHh-C--CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          246 DLNLHNFARMA-F--PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       246 ~~~~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      . ......... .  +........+..               ..............+.+++.+||+.||.+|||+.++++
T Consensus       259 ~-~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          259 V-ELFNNIRTKNIEYPLDRNHFLYPLT---------------NKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             H-HHHHHHTSCCCCCCCSSSSSTTTTC---------------C--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             H-HHHHHHhccCcCCccchhhhhcccc---------------ccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            1 111111110 0  000000000000               00000000123446789999999999999999999987

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=284.92  Aligned_cols=227  Identities=22%  Similarity=0.229  Sum_probs=165.4

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      +....++|++.+.||+|+||.||+|.+..   .||+|++....  ....+.+.+|+.++++++||||+++          
T Consensus        28 ~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  104 (319)
T 2y4i_B           28 WDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHL  104 (319)
T ss_dssp             SSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCE
T ss_pred             ccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCce
Confidence            34456789999999999999999999863   49999987442  2334567789999999999999987          


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  +.++.|++.||.|||+.+   |+||||||+||+++ ++.++|+|||++....
T Consensus       105 ~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~---i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~  180 (319)
T 2y4i_B          105 AIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKG---ILHKDLKSKNVFYD-NGKVVITDFGLFSISG  180 (319)
T ss_dssp             EEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTT---CCCCCCCSTTEEEC---CCEECCCSCCC---
T ss_pred             EEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCChhhEEEe-CCCEEEeecCCccccc
Confidence                                        568999999999999999   99999999999998 6799999999987553


Q ss_pred             cCCC-CCccCCCCccccccccchhhhcC---------CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHh
Q 039228          187 EVSN-PTQSSSNGVRRTIGYTALDYDLG---------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA  256 (356)
Q Consensus       187 ~~~~-~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~  256 (356)
                      .... ..........|++.|+|||++.+         ..++.++||||||+++|+|++|..||......  .........
T Consensus       181 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~  258 (319)
T 2y4i_B          181 VLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE--AIIWQMGTG  258 (319)
T ss_dssp             -------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH--HHHHHHHTT
T ss_pred             cccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHhccC
Confidence            2211 11222334568999999999874         45788999999999999999999999643211  111000000


Q ss_pred             CCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          257 FPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      ..        +.+..                     ..++..+.+++.+||..||++|||+.+|++.|+.+.+..
T Consensus       259 ~~--------~~~~~---------------------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~  304 (319)
T 2y4i_B          259 MK--------PNLSQ---------------------IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN  304 (319)
T ss_dssp             CC--------CCCCC---------------------SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred             CC--------CCCCc---------------------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence            00        00000                     012224689999999999999999999999999998764

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.1e-36  Score=278.35  Aligned_cols=217  Identities=23%  Similarity=0.311  Sum_probs=158.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++... ....+.+.+|+.+++.++||||+++                
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            45699999999999999999999999999999999643 3345678899999999999999753                


Q ss_pred             -----------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccc
Q 039228          135 -----------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF  179 (356)
Q Consensus       135 -----------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Df  179 (356)
                                                         +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+||
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~---i~H~dlkp~Nil~~~~~~~kl~df  160 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDF  160 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCC---eecccCCHHhEEEcCCCCEEEeeC
Confidence                                               357889999999999999   999999999999999999999999


Q ss_pred             ccccccccCCCC----------CccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCcc
Q 039228          180 ELARFRQEVSNP----------TQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN  248 (356)
Q Consensus       180 g~a~~~~~~~~~----------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~  248 (356)
                      |++.........          .........|++.|+|||++.+. .++.++||||||+++|+|++   ||.....    
T Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~----  233 (303)
T 1zy4_A          161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGME----  233 (303)
T ss_dssp             CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHH----
T ss_pred             cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchh----
Confidence            999765422110          01222346689999999999764 68999999999999999998   5532111    


Q ss_pred             HHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          249 LHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..........      ....+.....                  ...+..+.+++.+||+.||.+|||+.++++
T Consensus       234 ~~~~~~~~~~------~~~~~~~~~~------------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          234 RVNILKKLRS------VSIEFPPDFD------------------DNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HHHHHHHHHS------TTCCCCTTCC------------------TTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHhccc------cccccCcccc------------------ccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence            0111000000      0000000000                  123345789999999999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=282.29  Aligned_cols=216  Identities=19%  Similarity=0.221  Sum_probs=150.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-chHH-HHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-ASKS-FMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-~~~~-~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++...... .... +..+..+++.++||||+++              
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            56799999999999999999999989999999999755332 2223 4445557888899999986              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhc-CCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHH-CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~-~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.+++.||.|||+. +   |+||||||+||+++.++.+||+|||++....... 
T Consensus       104 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~---i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~-  179 (318)
T 2dyl_A          104 ELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHG---VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK-  179 (318)
T ss_dssp             CCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred             eccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCC---EEeCCCCHHHEEECCCCCEEEEECCCchhccCCc-
Confidence                                   46889999999999995 8   9999999999999999999999999997553321 


Q ss_pred             CCccCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV  265 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (356)
                          ......+++.|+|||++.     ...++.++||||||+++|+|++|+.||.........+........+       
T Consensus       180 ----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-------  248 (318)
T 2dyl_A          180 ----AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPP-------  248 (318)
T ss_dssp             -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCC-------
T ss_pred             ----cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCC-------
Confidence                123356899999999984     4568899999999999999999999997422111111111110000       


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                        .+...                    ......+.+++.+||+.||.+|||+.+|++.
T Consensus       249 --~~~~~--------------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          249 --LLPGH--------------------MGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             --CCCSS--------------------SCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             --CCCcc--------------------CCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence              00000                    0123357899999999999999999999873

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1e-35  Score=277.32  Aligned_cols=214  Identities=18%  Similarity=0.168  Sum_probs=140.3

Q ss_pred             cCCCCccc-cceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHH-HHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLIN-LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAE-CKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~-~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E-~~~l~~l~h~niv~l--------------  134 (356)
                      .++|.+.+ +||+|+||.||+|.+..+++.||||++...     .....| ...++.++||||+++              
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  101 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL  101 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence            56799855 699999999999999999999999998643     122233 334667789999876              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEcccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELA  182 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a  182 (356)
                                                   ..++.|++.||.|||+.+   |+||||||+||+++.   ++.+||+|||++
T Consensus       102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~---ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~  178 (336)
T 3fhr_A          102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFA  178 (336)
T ss_dssp             EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---eecCCCCHHHEEEEecCCCceEEEeccccc
Confidence                                         558899999999999999   999999999999976   456999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ......      ......+|+.|+|||++.+..++.++||||||+++|+|++|..||........... .. .       
T Consensus       179 ~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~~-~-------  243 (336)
T 3fhr_A          179 KETTQN------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG-MK-R-------  243 (336)
T ss_dssp             EEC----------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------------
T ss_pred             eecccc------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh-HH-H-------
Confidence            754321      22345679999999999888899999999999999999999999964332211000 00 0       


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .+.........                .....+...+.+++.+||+.||.+|||+.++++.
T Consensus       244 ~~~~~~~~~~~----------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  288 (336)
T 3fhr_A          244 RIRLGQYGFPN----------------PEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNH  288 (336)
T ss_dssp             -------CCCT----------------TTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             hhhccccccCc----------------hhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            00000000000                0001233467899999999999999999999973

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.8e-36  Score=286.60  Aligned_cols=214  Identities=21%  Similarity=0.226  Sum_probs=152.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc-CCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI-CHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l---------------  134 (356)
                      ..+|.+.+.||+|+||+||... ..+++.||||++.....   ..+.+|+.+|+.+ +||||+++               
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~-~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E   98 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRG-MFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE   98 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEE-ESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCeeecCcCEEEEEEE-EeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence            3468999999999999865433 34578999999865432   2356799999999 79999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-----CCceEEccccccccccc
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-----DLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-----~~~~kl~Dfg~a~~~~~  187 (356)
                                            +.++.||+.||.|||+.+   |+||||||+|||++.     ...+||+|||+++....
T Consensus        99 ~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~---ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~  175 (432)
T 3p23_A           99 LCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV  175 (432)
T ss_dssp             CCSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTT---CCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred             CCCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCc---CEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence                                  468999999999999999   999999999999943     33678999999986643


Q ss_pred             CCCCCccCCCCccccccccchhhhc---CCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDL---GSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      .... ........||+.|+|||++.   ...++.++|||||||++|||++ |..||......   ...........   .
T Consensus       176 ~~~~-~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~---~~~~~~~~~~~---~  248 (432)
T 3p23_A          176 GRHS-FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR---QANILLGACSL---D  248 (432)
T ss_dssp             -----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---HHHHHTTCCCC---T
T ss_pred             CCcc-eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---HHHHHhccCCc---c
Confidence            3211 12234467899999999997   4567889999999999999999 99998532111   00000000000   0


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          ....                    .......+.+|+.+||+.||.+|||+.+|++
T Consensus       249 ----~~~~--------------------~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          249 ----CLHP--------------------EKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             ----TSCT--------------------TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----ccCc--------------------cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence                0000                    0133345679999999999999999999984

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.8e-35  Score=295.32  Aligned_cols=242  Identities=21%  Similarity=0.212  Sum_probs=169.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||.||+|.+..+++.||||++... .....+.+.+|+.++++++||||+++               
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            46899999999999999999999999999999998754 23345678999999999999999865               


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCc---eEEcccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLF---AHIGDFE  180 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~---~kl~Dfg  180 (356)
                                                     ..++.+++.||.|||+.+   |+||||||+||+++.++.   +||+|||
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~g---IVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTT---BCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCC---CccCCCCHHHeEeecCCCceeEEEcccc
Confidence                                           458899999999999999   999999999999996664   8999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCc
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR  260 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~  260 (356)
                      ++.......     ......||+.|+|||.+.+..++.++||||||+++|+|++|..||....    ....|........
T Consensus       170 ~a~~~~~~~-----~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~----~~~~~~~~i~~~~  240 (676)
T 3qa8_A          170 YAKELDQGE-----LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW----QPVQWHGKVREKS  240 (676)
T ss_dssp             CCCBTTSCC-----CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC----HHHHSSTTCC---
T ss_pred             ccccccccc-----ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc----chhhhhhhhhccc
Confidence            998654322     2234678999999999999999999999999999999999999996421    1111111000000


Q ss_pred             hHH-HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHH-----HHHHHHHhhhh
Q 039228          261 VMD-IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPN-----AVHDLQSVNNI  330 (356)
Q Consensus       261 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~-----vl~~L~~i~~~  330 (356)
                      ... .....+.+....     ...... ........+..+.+++..||..||++|||+.+     .++.++.+.+.
T Consensus       241 ~~~~~~~~~l~g~~~~-----~~~lp~-p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~  310 (676)
T 3qa8_A          241 NEHIVVYDDLTGAVKF-----SSVLPT-PNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSL  310 (676)
T ss_dssp             ---CCSCCCCSSSCCC-----CSSSCC-SCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCC
T ss_pred             chhhhhhhhhcccccc-----ccccCC-chhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhc
Confidence            000 000000000000     000000 00011134567889999999999999999988     56777666543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=8e-35  Score=265.32  Aligned_cols=201  Identities=13%  Similarity=0.053  Sum_probs=154.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....   ...+.+.+|+.++..++||||+++             
T Consensus        30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence            3679999999999999999999999999999999975432   234678999999999999999987             


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||.|||+++   |+||||||+|||++.++.+||+++|.           
T Consensus       110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~g---ivH~Dikp~NIll~~~g~~kl~~~~~-----------  175 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAG---VALSIDHPSRVRVSIDGDVVLAYPAT-----------  175 (286)
T ss_dssp             EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCSGGGEEEETTSCEEECSCCC-----------
T ss_pred             EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCC---CccCCCCcccEEEcCCCCEEEEeccc-----------
Confidence                                  568999999999999999   99999999999999999999985442           


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                                   ++       .++.++|||||||++|||+||+.||...........              ....+...
T Consensus       176 -------------~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~--------------~~~~~~~~  221 (286)
T 3uqc_A          176 -------------MP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP--------------AERDTAGQ  221 (286)
T ss_dssp             -------------CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE--------------CCBCTTSC
T ss_pred             -------------cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH--------------HHHHhccC
Confidence                         22       367899999999999999999999975432210000              00000000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      ...        .    ......++..+.+++.+||+.||.+| |+.++++.|+.+.....
T Consensus       222 ~~~--------~----~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~  268 (286)
T 3uqc_A          222 PIE--------P----ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVAD  268 (286)
T ss_dssp             BCC--------H----HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred             CCC--------h----hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence            000        0    00001234467899999999999999 99999999999886543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.8e-34  Score=293.02  Aligned_cols=208  Identities=20%  Similarity=0.219  Sum_probs=168.2

Q ss_pred             cCCCCccccceecCceEEEEEEECC-CCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDL-NRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|.+.. +++.||||++.... ......+.+|+.++++++||||+++              
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            4789999999999999999999976 68999999986433 2344578899999999999999976              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+++   ||||||||+|||++.+ .+||+|||+++.....
T Consensus       159 ~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~g---iiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~  234 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIG---LVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF  234 (681)
T ss_dssp             EEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSS-CEEECCCTTCEETTCC
T ss_pred             eEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCC---CeecccChHHeEEeCC-cEEEEecccchhcccC
Confidence                                      568999999999999999   9999999999999975 8999999999865332


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                              ....||+.|+|||++.+. ++.++|||||||++|+|++|..||........          +..        
T Consensus       235 --------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~----------~~~--------  287 (681)
T 2pzi_A          235 --------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGL----------PED--------  287 (681)
T ss_dssp             --------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSSC----------CTT--------
T ss_pred             --------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccccc----------ccc--------
Confidence                    345689999999998765 48899999999999999999999864322110          000        


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-ChHHHHHHHHHhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-NVPNAVHDLQSVNNI  330 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-s~~~vl~~L~~i~~~  330 (356)
                         .                  ........+.+++.+||+.||.+|| +++++.+.|..+...
T Consensus       288 ---~------------------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~  329 (681)
T 2pzi_A          288 ---D------------------PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLRE  329 (681)
T ss_dssp             ---C------------------HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHH
T ss_pred             ---c------------------cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHH
Confidence               0                  0012234578999999999999999 577788888777544

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.6e-33  Score=256.59  Aligned_cols=194  Identities=18%  Similarity=0.239  Sum_probs=145.5

Q ss_pred             cCCCCcc-ccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHH-hhcCCCChHHH--------------
Q 039228           71 TDGFPLI-NLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKAL-KNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~-~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l--------------  134 (356)
                      .++|.+. +.||+|+||.||+|.+..+++.||+|++..     ...+.+|+.++ +.++||||+++              
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   90 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   90 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence            4568777 789999999999999999999999999863     24567888887 56689999986              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEcccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELA  182 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a  182 (356)
                                                   ..++.|++.||.|||+.+   |+||||||+||+++.   ++.+||+|||++
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a  167 (299)
T 3m2w_A           91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFA  167 (299)
T ss_dssp             EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred             EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence                                         458899999999999999   999999999999997   789999999998


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      ....                          +..++.++|||||||++|+|++|..||........     . ......  
T Consensus       168 ~~~~--------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-----~-~~~~~~--  213 (299)
T 3m2w_A          168 KETT--------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-----S-PGMKTR--  213 (299)
T ss_dssp             EECT--------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------CCSCCS--
T ss_pred             cccc--------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-----h-HHHHHH--
Confidence            6322                          23467889999999999999999999964321110     0 000000  


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                           .......            ............+.+++.+||+.||.+|||+.++++.
T Consensus       214 -----~~~~~~~------------~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          214 -----IRMGQYE------------FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             -----SCTTCCS------------SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -----Hhhcccc------------CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence                 0000000            0000001234467899999999999999999999973

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=5.4e-33  Score=258.62  Aligned_cols=155  Identities=23%  Similarity=0.199  Sum_probs=131.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--------ccchHHHHHHHHHHhhcC---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--------QGASKSFMAECKALKNIC---------------  127 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------------  127 (356)
                      .++|++.+.||+|+||.||+|++  +++.||||++....        ....+.+.+|+.+++.++               
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            35689999999999999999998  57999999997542        223377889999999887               


Q ss_pred             -----------CCChHHH-------------------------------------------------HHHHHHHHHHHHH
Q 039228          128 -----------HRNLVRF-------------------------------------------------ISIAIDVASALDY  147 (356)
Q Consensus       128 -----------h~niv~l-------------------------------------------------~~i~~~i~~aL~~  147 (356)
                                 ||||+++                                                 ..++.||+.||.|
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                       6777664                                                 3478899999999


Q ss_pred             Hh-hcCCCcEEecCCCCCCeEeCCCC--------------------ceEEcccccccccccCCCCCccCCCCcccccccc
Q 039228          148 LH-HHCQELILHCDPKPSNVLLDNDL--------------------FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT  206 (356)
Q Consensus       148 LH-~~~~~~iiH~Dlkp~NIll~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~  206 (356)
                      || +.+   |+||||||+|||++.++                    .+||+|||+++....         ....||+.|+
T Consensus       177 lH~~~~---ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~---------~~~~gt~~y~  244 (336)
T 2vuw_A          177 AEASLR---FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD---------GIVVFCDVSM  244 (336)
T ss_dssp             HHHHHC---CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET---------TEEECCCCTT
T ss_pred             HHHhCC---EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC---------CcEEEeeccc
Confidence            99 899   99999999999999887                    899999999986542         1357899999


Q ss_pred             chhhhcCCCCCCccchHhHHHH-HHHHHcCCCCCC
Q 039228          207 ALDYDLGSEVSTNGDAYNYGIL-LLEMVTRRKPID  240 (356)
Q Consensus       207 aPE~~~~~~~~~~sDiwSlG~~-l~elltg~~Pf~  240 (356)
                      |||++.+.. +.++||||+|++ .+++++|..||.
T Consensus       245 aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~  278 (336)
T 2vuw_A          245 DEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS  278 (336)
T ss_dssp             CSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred             ChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence            999998766 889999998776 788999999984

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.90  E-value=5.5e-26  Score=225.46  Aligned_cols=153  Identities=15%  Similarity=-0.009  Sum_probs=102.3

Q ss_pred             cceecCceEEEEEEECCCCeEEEEEEeeccC----------ccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           79 LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC----------QGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        79 ~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      ..+.|++|.+..++....|+.||+|++....          ....++|.+|+++|+++ .|+||+++             
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            3566777777766666678999999996542          12235689999999999 69999987             


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..|+.||+.||+|+|++|   ||||||||+|||++.+|.+||+|||+|+......    
T Consensus       321 MEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~G---IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~----  393 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQG---FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC----  393 (569)
T ss_dssp             EECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT---CEESCCCGGGEEECTTSCEEECCCTTEESCC-------
T ss_pred             EecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCC---ceeccCchHhEEECCCCCEEEeecccCeeCCCCC----
Confidence                                 458999999999999999   9999999999999999999999999998654322    


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCC
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI  239 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf  239 (356)
                      ......+||+.|+|||++.+ .+..++|+||+|++++++.++..++
T Consensus       394 ~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          394 SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred             ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence            23345789999999999976 4667899999999988876665443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.87  E-value=2.4e-23  Score=205.29  Aligned_cols=159  Identities=18%  Similarity=0.099  Sum_probs=119.1

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeeccCc--------cchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------GASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ...+.||+|+||.||+|...  +..+++|.......        ...+++.+|+.++++++||||+++            
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~--~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l  416 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYL--DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI  416 (540)
T ss_dssp             ---------CCEEEEEEECS--SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred             CCCCEEeeCCCEEEEEEEEC--CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence            34568999999999999544  68899998643221        113457899999999999999933            


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC---cc
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT---QS  194 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~---~~  194 (356)
                                       ..++.|++.||.|||+++   |+||||||+|||++.  .+||+|||+++.........   ..
T Consensus       417 VmE~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~g---IiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~  491 (540)
T 3en9_A          417 MMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKND---VIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIV  491 (540)
T ss_dssp             EEECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHTT---EECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCc---CccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhh
Confidence                             368999999999999999   999999999999998  99999999998764321100   00


Q ss_pred             CCCCccccccccchhhhcC--CCCCCccchHhHHHHHHHHHcCCCCCC
Q 039228          195 SSNGVRRTIGYTALDYDLG--SEVSTNGDAYNYGILLLEMVTRRKPID  240 (356)
Q Consensus       195 ~~~~~~gt~~y~aPE~~~~--~~~~~~sDiwSlG~~l~elltg~~Pf~  240 (356)
                      ......||+.|+|||++..  ..|+..+|+||..+-..+.+.++.+|.
T Consensus       492 ~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          492 FKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             hhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            1235779999999999976  567888899999998888888777763

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.84  E-value=4.8e-21  Score=173.74  Aligned_cols=126  Identities=17%  Similarity=0.079  Sum_probs=101.6

Q ss_pred             HHHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc------------------cchHHHHHHHHHHhhc
Q 039228           65 ESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ------------------GASKSFMAECKALKNI  126 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l  126 (356)
                      ..+......|.+.+.||+|+||.||+|.+ .+++.||||+++....                  .....+.+|+.+++++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l  161 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL  161 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence            34445556677889999999999999999 7789999999964321                  1245688999999999


Q ss_pred             CCCChHHH--------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccc
Q 039228          127 CHRNLVRF--------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFE  180 (356)
Q Consensus       127 ~h~niv~l--------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg  180 (356)
                      +|+++..+                          ..++.|++.||.|||+.+   |+||||||+|||++ ++.+||+|||
T Consensus       162 ~~~~v~~~~~~~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH~~g---iiHrDlkp~NILl~-~~~vkl~DFG  237 (282)
T 1zar_A          162 QGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVS-EEGIWIIDFP  237 (282)
T ss_dssp             TTSSSCCEEEEETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEE-TTEEEECCCT
T ss_pred             cCCCcCeEEeccceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHHHCC---CEeCCCCHHHEEEE-CCcEEEEECC
Confidence            85444332                          568999999999999999   99999999999999 9999999999


Q ss_pred             cccccccCCCCCccCCCCccccccccchhhhc
Q 039228          181 LARFRQEVSNPTQSSSNGVRRTIGYTALDYDL  212 (356)
Q Consensus       181 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  212 (356)
                      +++.                 +..+.|||++.
T Consensus       238 ~a~~-----------------~~~~~a~e~l~  252 (282)
T 1zar_A          238 QSVE-----------------VGEEGWREILE  252 (282)
T ss_dssp             TCEE-----------------TTSTTHHHHHH
T ss_pred             CCeE-----------------CCCCCHHHHHH
Confidence            9962                 33468899874

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.73  E-value=6.7e-18  Score=150.99  Aligned_cols=107  Identities=16%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             CCCccccceecCceEEEEEEECCCCeE--EEEEEeeccCcc------------------------chHHHHHHHHHHhhc
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAV--VAIKVLSIQCQG------------------------ASKSFMAECKALKNI  126 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l  126 (356)
                      -|.+.+.||+|+||.||+|.+..+|+.  ||||+++.....                        ....+.+|+.+|.++
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            367889999999999999998666788  999997543111                        013578899999988


Q ss_pred             CCCChH-------------------------------------HHHHHHHHHHHHHHHHh-hcCCCcEEecCCCCCCeEe
Q 039228          127 CHRNLV-------------------------------------RFISIAIDVASALDYLH-HHCQELILHCDPKPSNVLL  168 (356)
Q Consensus       127 ~h~niv-------------------------------------~l~~i~~~i~~aL~~LH-~~~~~~iiH~Dlkp~NIll  168 (356)
                      .|+++.                                     ....++.|++.||.||| +.+   |+||||||+|||+
T Consensus       128 ~~~~i~~p~~~~~~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~g---ivHrDlkp~NILl  204 (258)
T 1zth_A          128 KEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAE---LVHADLSEYNIMY  204 (258)
T ss_dssp             HHTTCCCCCEEEEETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSC---EECSSCSTTSEEE
T ss_pred             HhCCCCCCeEEEcCCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCC---EEeCCCCHHHEEE
Confidence            765421                                     01457889999999999 898   9999999999999


Q ss_pred             CCCCceEEcccccccc
Q 039228          169 DNDLFAHIGDFELARF  184 (356)
Q Consensus       169 ~~~~~~kl~Dfg~a~~  184 (356)
                      +.  .++|+|||+|..
T Consensus       205 ~~--~~~liDFG~a~~  218 (258)
T 1zth_A          205 ID--KVYFIDMGQAVT  218 (258)
T ss_dssp             SS--SEEECCCTTCEE
T ss_pred             cC--cEEEEECccccc
Confidence            98  899999999964

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.55  E-value=1.1e-14  Score=136.24  Aligned_cols=112  Identities=17%  Similarity=0.179  Sum_probs=81.0

Q ss_pred             HhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--------------cchHHH--------HHHHHHHhh
Q 039228           68 LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--------------GASKSF--------MAECKALKN  125 (356)
Q Consensus        68 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------------~~~~~~--------~~E~~~l~~  125 (356)
                      .....-|.+.+.||.|+||.||+|.+. +|+.||||+++....              ......        .+|...|.+
T Consensus        91 ~~rg~iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~r  169 (397)
T 4gyi_A           91 AARKDVYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKA  169 (397)
T ss_dssp             HHTTSCSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCEEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            333345999999999999999999986 579999999753210              001111        235555555


Q ss_pred             cCCCChHH-----------------------------HHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC----
Q 039228          126 ICHRNLVR-----------------------------FISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL----  172 (356)
Q Consensus       126 l~h~niv~-----------------------------l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~----  172 (356)
                      +.+.++.-                             ...++.|++.+|.+||+.|   ||||||||.|||+++++    
T Consensus       170 L~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~g---IVHrDLKp~NILl~~dgd~~d  246 (397)
T 4gyi_A          170 LYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKHG---LIHGDFNEFNILIREEKDAED  246 (397)
T ss_dssp             HHHTTCSCCCEEEEETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEEEEECSSC
T ss_pred             HHhcCCCCCeeeeccCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHCC---CcCCCCCHHHEEEeCCCCccc
Confidence            43222110                             0458899999999999999   99999999999998776    


Q ss_pred             ------ceEEccccccc
Q 039228          173 ------FAHIGDFELAR  183 (356)
Q Consensus       173 ------~~kl~Dfg~a~  183 (356)
                            .+.|+||+-+.
T Consensus       247 ~~~~~~~~~iID~~Q~V  263 (397)
T 4gyi_A          247 PSSITLTPIIIXFPQMV  263 (397)
T ss_dssp             TTSEEEEEEECCCTTCE
T ss_pred             ccccccceEEEEeCCcc
Confidence                  38899999774

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.78  E-value=1.3e-08  Score=90.30  Aligned_cols=112  Identities=13%  Similarity=0.084  Sum_probs=84.4

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF--------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l--------------  134 (356)
                      ..++|.+...++.|+.+.||++...  +..+++|+...........+.+|+.+++.+. +..+.++              
T Consensus        12 ~l~~~~~~~~~~g~s~~~v~~~~~~--~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~   89 (263)
T 3tm0_A           12 LIEKYRCVKDTEGMSPAKVYKLVGE--NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM   89 (263)
T ss_dssp             HHTTSEEEECCSCCSSSEEEEEECS--SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             HhccceeEeeccCCCCCeEEEEECC--CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEE
Confidence            4567988889999999999999754  5889999987532223346888999998885 3333322              


Q ss_pred             ------------------HHHHHHHHHHHHHHhhcC--------------------------------------------
Q 039228          135 ------------------ISIAIDVASALDYLHHHC--------------------------------------------  152 (356)
Q Consensus       135 ------------------~~i~~~i~~aL~~LH~~~--------------------------------------------  152 (356)
                                        ..++.+++.+|..||+..                                            
T Consensus        90 e~i~G~~l~~~~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (263)
T 3tm0_A           90 SEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRE  169 (263)
T ss_dssp             ECCSSEEHHHHCCTTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHH
T ss_pred             EecCCeehhhccCCcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHH
Confidence                              246788999999999810                                            


Q ss_pred             ------------CCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          153 ------------QELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       153 ------------~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                  ...++|+|++|.||++++++.+.|+||+.+.
T Consensus       170 l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          170 LYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                        0238999999999999876666799999874

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.41  E-value=2.2e-07  Score=81.76  Aligned_cols=109  Identities=18%  Similarity=0.125  Sum_probs=78.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCCh-HH-H--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL-VR-F--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~-l--------------  134 (356)
                      ..++.+....+.|..+.||++.. .+|..+++|+....   ....+..|+.+++.+.+.++ ++ +              
T Consensus        19 ~~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~   94 (264)
T 1nd4_A           19 LFGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL   94 (264)
T ss_dssp             TTTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred             cCCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence            34566544444566699999965 34578999997643   22456788888888754433 21 1              


Q ss_pred             -------H--------HHHHHHHHHHHHHhhcC-----------------------------------------------
Q 039228          135 -------I--------SIAIDVASALDYLHHHC-----------------------------------------------  152 (356)
Q Consensus       135 -------~--------~i~~~i~~aL~~LH~~~-----------------------------------------------  152 (356)
                             +        .++.+++..|..||+..                                               
T Consensus        95 e~i~G~~l~~~~~~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  174 (264)
T 1nd4_A           95 GEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARL  174 (264)
T ss_dssp             ECCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHH
T ss_pred             EecCCcccCcCcCCHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHH
Confidence                   1        57888999999999753                                               


Q ss_pred             --------CCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          153 --------QELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       153 --------~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                              ...++|+|++|.||++++++.+.|+||+.+.
T Consensus       175 ~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          175 KARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             HHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                    0129999999999999877667799999875

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.25  E-value=2.5e-07  Score=83.93  Aligned_cols=154  Identities=18%  Similarity=0.133  Sum_probs=95.3

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCCh-----H-----------HH-----
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNL-----V-----------RF-----  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~ni-----v-----------~l-----  134 (356)
                      .+.++.|..+.||+..     ..+++|+....  .....+.+|+.+|+.+. +..+     +           .+     
T Consensus        25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~   97 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTK   97 (304)
T ss_dssp             CCEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEEC
T ss_pred             eEecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcc
Confidence            4568999999999863     45888886422  33467888999998773 2211     0           00     


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcC-------------------------------------------
Q 039228          135 -------------------ISIAIDVASALDYLHHHC-------------------------------------------  152 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~-------------------------------------------  152 (356)
                                         ..++.+++..|..||...                                           
T Consensus        98 i~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  177 (304)
T 3sg8_A           98 IKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFY  177 (304)
T ss_dssp             CCCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCeECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHH
Confidence                               246778888888888621                                           


Q ss_pred             ------------CCcEEecCCCCCCeEeCC--CCceEEcccccccccccCCCCCccCCC----------Cccccccccc-
Q 039228          153 ------------QELILHCDPKPSNVLLDN--DLFAHIGDFELARFRQEVSNPTQSSSN----------GVRRTIGYTA-  207 (356)
Q Consensus       153 ------------~~~iiH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~~----------~~~gt~~y~a-  207 (356)
                                  ...++|+|++|.||+++.  ...+.|+||+.+...............          ......+... 
T Consensus       178 ~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~  257 (304)
T 3sg8_A          178 RDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDI  257 (304)
T ss_dssp             HHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCH
T ss_pred             HHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCc
Confidence                        123899999999999997  566789999998754321100000000          0000001111 


Q ss_pred             hhhhcCCCCCCccchHhHHHHHHHHHcCCCCC
Q 039228          208 LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPI  239 (356)
Q Consensus       208 PE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf  239 (356)
                      |+....  .....+.|++|.++|.+.+|..+|
T Consensus       258 ~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~  287 (304)
T 3sg8_A          258 PTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence            222111  112258999999999999998876

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.14  E-value=2.3e-06  Score=79.34  Aligned_cols=108  Identities=11%  Similarity=0.162  Sum_probs=75.3

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEee--ccCc-cchHHHHHHHHHHhhcCCCCh--HHH---------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--IQCQ-GASKSFMAECKALKNICHRNL--VRF---------------  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~--~~~~-~~~~~~~~E~~~l~~l~h~ni--v~l---------------  134 (356)
                      ...+.|+.|.++.||+....  +..+++|+..  .... .....+.+|+.+++.+...++  .++               
T Consensus        41 ~~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~  118 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY  118 (359)
T ss_dssp             CEEEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred             ceEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence            34667899999999998865  4678888865  3221 223467789999988863222  111               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcC---------------------------------------
Q 039228          135 -----------------------ISIAIDVASALDYLHHHC---------------------------------------  152 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~---------------------------------------  152 (356)
                                             ..++.+++.+|..||...                                       
T Consensus       119 vme~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (359)
T 3dxp_A          119 IMEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMD  198 (359)
T ss_dssp             EEECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             EEEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHH
Confidence                                   346788999999999731                                       


Q ss_pred             ----------------CCcEEecCCCCCCeEeCCCCc--eEEcccccccc
Q 039228          153 ----------------QELILHCDPKPSNVLLDNDLF--AHIGDFELARF  184 (356)
Q Consensus       153 ----------------~~~iiH~Dlkp~NIll~~~~~--~kl~Dfg~a~~  184 (356)
                                      ...++|+|+++.||+++.++.  +.|.||+.+..
T Consensus       199 ~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          199 SLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                            134999999999999987653  68999999864

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.20  E-value=0.00043  Score=64.86  Aligned_cols=50  Identities=18%  Similarity=0.074  Sum_probs=32.6

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCc-------cchHHHHHHHHHHhhc
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-------GASKSFMAECKALKNI  126 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l  126 (356)
                      .+.||.|..+.||++....+++.++||.......       ....++..|..+++.+
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l   91 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQ   91 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHH
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHh
Confidence            5678999999999997655568899998642211       1234566788777765

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.03  E-value=0.0014  Score=59.19  Aligned_cols=45  Identities=11%  Similarity=0.073  Sum_probs=33.0

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCC
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH  128 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h  128 (356)
                      ...++.|....||+.     +..+++|+..  .......+..|..+|+.+.+
T Consensus        24 v~~l~~G~~n~v~~v-----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~   68 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----NGDWVFRFPK--SQQGADELNKEIQLLPLLVG   68 (306)
T ss_dssp             EEEEEECSSEEEEEE-----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTT
T ss_pred             eeecCCCcceeEEEE-----CCEEEEEecC--CchHHHHHHHHHHHHHHHHh
Confidence            456788988999987     3567888843  22334678899999998864

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.03  E-value=0.002  Score=57.51  Aligned_cols=54  Identities=15%  Similarity=0.059  Sum_probs=40.6

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC  127 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  127 (356)
                      ...-...+|.|..+.||+....+ |+.|.+|+...........+..|+..|+.|.
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l~D-G~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~   69 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVELAD-GTPLFVKALPDDAPALDGLFRAEALGLDWLG   69 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETT-SCEEEEEECCTTCCCCTTHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCeEEEEEEECC-CCEEEEEEeCCCCcchhhHHHHHHHHHHHHH
Confidence            34556788999999999998764 5889999876444343456778998888774

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=96.92  E-value=0.0035  Score=55.06  Aligned_cols=102  Identities=18%  Similarity=0.116  Sum_probs=69.4

Q ss_pred             cceecCce-EEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCC----CChHHH-------------------
Q 039228           79 LIGVGSFD-AVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH----RNLVRF-------------------  134 (356)
Q Consensus        79 ~lg~G~~g-~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l-------------------  134 (356)
                      .+..|..| .||+.....++..+++|+-..   .....+..|...|+.+..    |.++.+                   
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~  107 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA  107 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence            34555554 689888777778899998653   234567789988887742    211110                   


Q ss_pred             -----------HHHHHHHHHHHHHHhhcC---------------------------------------------------
Q 039228          135 -----------ISIAIDVASALDYLHHHC---------------------------------------------------  152 (356)
Q Consensus       135 -----------~~i~~~i~~aL~~LH~~~---------------------------------------------------  152 (356)
                                 ..++.+++..|.-||...                                                   
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  187 (272)
T 4gkh_A          108 FQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLL  187 (272)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcc
Confidence                       235556666777777521                                                   


Q ss_pred             ----CCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          153 ----QELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       153 ----~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                          ..-++|+|+.+.||++++++.+-|+||+.+.
T Consensus       188 ~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          188 PFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             CCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             cccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                0117999999999999988777899999885

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=95.19  E-value=0.021  Score=51.68  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=26.3

Q ss_pred             cEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      .++|+|+.+.||+++.++.+.|+||+.+.
T Consensus       223 ~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          223 NLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             ceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            49999999999999878889999999874

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=95.14  E-value=0.097  Score=49.89  Aligned_cols=30  Identities=13%  Similarity=0.082  Sum_probs=21.4

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEee
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLS  106 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~  106 (356)
                      .+.|+.|-...+|++....++..+++|+..
T Consensus       113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g  142 (458)
T 2qg7_A          113 FQIINGGITNILIKVKDMSKQAKYLIRLYG  142 (458)
T ss_dssp             EEEECC--CEEEEEEEETTTTEEEEEEEEC
T ss_pred             EEEcCCCeEeEEEEEEECCCCceEEEEECC
Confidence            456778888999999886545788899863

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=94.89  E-value=0.062  Score=50.76  Aligned_cols=49  Identities=14%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             cccceecCceEEEEEEECC-------CCeEEEEEEeeccCccchHHHHHHHHHHhhcC
Q 039228           77 INLIGVGSFDAVYQGVFDL-------NRAVVAIKVLSIQCQGASKSFMAECKALKNIC  127 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  127 (356)
                      .+.|+.|....||++....       .+..+++|+....  .....+..|..+++.+.
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~  133 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLS  133 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHH
Confidence            4567888889999998753       2468889987421  11144556777766653

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=93.90  E-value=0.099  Score=47.12  Aligned_cols=46  Identities=15%  Similarity=0.101  Sum_probs=33.6

Q ss_pred             ccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhc
Q 039228           76 LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI  126 (356)
Q Consensus        76 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l  126 (356)
                      -.+.|+.|....+|+...  ++..+++|+....   ....+..|...|+.|
T Consensus        40 ~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L   85 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALL   85 (312)
T ss_dssp             EEEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHH
T ss_pred             eeEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHH
Confidence            346789999999999875  3578889987632   245677787777766

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=93.82  E-value=0.13  Score=47.64  Aligned_cols=29  Identities=28%  Similarity=0.345  Sum_probs=25.6

Q ss_pred             cEEecCCCCCCeEeCCC----CceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDND----LFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~----~~~kl~Dfg~a~  183 (356)
                      .++|+|+.+.||+++.+    +.+.|+||..+.
T Consensus       221 ~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          221 VFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             EEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             EEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            38999999999999876    789999999885

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=93.12  E-value=0.055  Score=50.83  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=44.4

Q ss_pred             cEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccc--cccccchhhhcCCC---CCCccchHhHHHHH
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRR--TIGYTALDYDLGSE---VSTNGDAYNYGILL  229 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~~---~~~~sDiwSlG~~l  229 (356)
                      .++|+|+.|.|||++.++ +.|+||+.+.........     .....  ...|.+|+......   -....++.+....+
T Consensus       233 ~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dl-----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (420)
T 2pyw_A          233 ALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDI-----GAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQT  306 (420)
T ss_dssp             EEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHH-----HHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHH
T ss_pred             eEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHH-----HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence            499999999999999776 999999998754321100     00000  12355555543111   11123445677777


Q ss_pred             HHHHcC
Q 039228          230 LEMVTR  235 (356)
Q Consensus       230 ~elltg  235 (356)
                      |+.+++
T Consensus       307 ~~~y~~  312 (420)
T 2pyw_A          307 WNLFNK  312 (420)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777665

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=92.42  E-value=0.55  Score=39.83  Aligned_cols=97  Identities=10%  Similarity=-0.003  Sum_probs=53.4

Q ss_pred             HHhhcCCC-ChHHHHHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCcc
Q 039228          122 ALKNICHR-NLVRFISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR  200 (356)
Q Consensus       122 ~l~~l~h~-niv~l~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~  200 (356)
                      ||+..+.| +==+.+.++.|.+.+|.-+-....  -..+=+.|..|++..+|.+.+.+ +.+.                .
T Consensus        38 IL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~--~~~~i~~~~~i~l~~dG~V~f~~-~~s~----------------~   98 (229)
T 2yle_A           38 ILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQ--PRHRVRSAAQIRVWRDGAVTLAP-AADD----------------A   98 (229)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTC--CCCCCCSGGGEEEETTSCEEECC-C--------------------
T ss_pred             HHHHcCCCcCHHHHHHHHHHHHHHHHhhhhccc--CCceecCCcceEEecCCceeccc-cccc----------------c
Confidence            34444443 333457788888888876621110  01223456889999999887653 1110                1


Q ss_pred             ccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCC
Q 039228          201 RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP  238 (356)
Q Consensus       201 gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~P  238 (356)
                      ....+.+||... ...+.+.=|||||+++|.-+-=..|
T Consensus        99 ~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A           99 GEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             --------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence            122456777653 2345666799999999999874444

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=91.65  E-value=0.087  Score=47.23  Aligned_cols=43  Identities=28%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             HHHHHHHHhhc----CCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          141 VASALDYLHHH----CQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       141 i~~aL~~LH~~----~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      +...+.++...    ....++|+|+.+.||+++.++.+.|+||+.+.
T Consensus       170 l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          170 IRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             HHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            33445555532    12348999999999999987666899999874

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=90.47  E-value=0.28  Score=44.14  Aligned_cols=30  Identities=23%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             cEEecCCCCCCeEeCCC----CceEEcccccccc
Q 039228          155 LILHCDPKPSNVLLDND----LFAHIGDFELARF  184 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~----~~~kl~Dfg~a~~  184 (356)
                      .++|+|+.+.||+++.+    +.+.|+||+.+..
T Consensus       184 ~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          184 VFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             EEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             eeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            49999999999999874    6789999998864

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=90.25  E-value=0.099  Score=47.66  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=25.6

Q ss_pred             CcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          154 ELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       154 ~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ..++|+|+.+.||+++++..+.|+||+.+.
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence            349999999999999965557899999885

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=88.43  E-value=0.36  Score=43.23  Aligned_cols=28  Identities=36%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             cEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                      .++|+|+.+.||+++ + .+.|+||+.+..
T Consensus       196 ~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          196 LRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             EECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             eeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            488999999999999 4 889999998753

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=87.39  E-value=0.27  Score=45.11  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             cEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      .++|+|+.+.|||+++++ +.|+||..+.
T Consensus       213 ~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             EEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            389999999999998655 8999998875

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=86.43  E-value=0.25  Score=44.83  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=26.8

Q ss_pred             cEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                      .++|+|+.+.||+++.++.+.|.||+.+..
T Consensus       207 ~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          207 VLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             EEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             eeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            499999999999999888899999988754

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=84.84  E-value=0.39  Score=42.61  Aligned_cols=29  Identities=34%  Similarity=0.476  Sum_probs=24.5

Q ss_pred             cEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          155 LILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       155 ~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                      .++|+|+.+.||+ ..++.+.|+||..+..
T Consensus       174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             eeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            4899999999999 5566789999998853

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=81.31  E-value=0.11  Score=49.71  Aligned_cols=57  Identities=9%  Similarity=0.067  Sum_probs=14.2

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEE------EEeeccC--ccchHHHHHHHHHHhhcCCCChHHH
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAI------KVLSIQC--QGASKSFMAECKALKNICHRNLVRF  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vav------K~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l  134 (356)
                      .+.+.||   ||.||+|.+......||+      |......  .+....+.+|..+++.++|||+++.
T Consensus       145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~  209 (463)
T 3cxl_A          145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKI  209 (463)
T ss_dssp             CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBC
T ss_pred             cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCC
Confidence            4556676   999999999765568888      6654321  2233467888899999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	7e-31
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-30
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-30
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-30
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-29
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	9e-27
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-26
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-26
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-26
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-26
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-26
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	6e-26
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-25
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-25
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-25
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-25
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	9e-25
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	9e-25
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-24
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-24
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-24
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	8e-24
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-23
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	6e-23
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-22
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-22
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-21
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-20
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-20
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	8e-20
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-19
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-19
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-19
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-19
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	8e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-18
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-18
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	5e-18
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-17
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-17
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-17
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	9e-17
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-16
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	7e-16
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-15
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-15
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-15
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-14
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-14
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-14
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	6e-14
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-13
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-12
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-09

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (292), Expect = 7e-31
 Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 55/227 (24%)

Query: 64  YESLLKATDGFP---------LINLIGVGSFDAVYQGVFDLN---RAVVAIKVL-SIQCQ 110
           +E   +A   F          +  +IG G F  V  G   L       VAIK L S   +
Sbjct: 9   FEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTE 68

Query: 111 GASKSFMAECKALKNICHRNLVRF------------------------------------ 134
              + F++E   +    H N++                                      
Sbjct: 69  KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVI 128

Query: 135 --ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARF-RQEVSNP 191
             + +   +A+ + YL        +H D    N+L++++L   + DF L+RF   + S+P
Sbjct: 129 QLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDP 185

Query: 192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           T +S+ G +  I +TA +     + ++  D ++YGI++ E+++  + 
Sbjct: 186 TYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGER 232

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-30
 Identities = 54/224 (24%), Positives = 82/224 (36%), Gaps = 60/224 (26%)

Query: 59  IPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGAS--KSF 116
           IP               +   IG GSF  VY+G +      VA+K+L++        ++F
Sbjct: 5   IPDGQIT----------VGQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAF 51

Query: 117 MAECKALKNICHRNLVRFI-------------------------------------SIAI 139
             E   L+   H N++ F+                                      IA 
Sbjct: 52  KNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIAR 111

Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
             A  +DYLH      I+H D K +N+ L  DL   IGDF LA  +   S   Q     +
Sbjct: 112 QTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQ--L 166

Query: 200 RRTIGYTALDYDLGSE---VSTNGDAYNYGILLLEMVTRRKPID 240
             +I + A +     +    S   D Y +GI+L E++T + P  
Sbjct: 167 SGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS 210

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 4e-30
 Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 60/254 (23%)

Query: 59  IPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMA 118
           +P+E  +          L+  +G G F  V+ G ++ +   VA+K L  Q   +  +F+A
Sbjct: 10  VPRETLK----------LVERLGAGQFGEVWMGYYNGHT-KVAVKSLK-QGSMSPDAFLA 57

Query: 119 ECKALKNICHRNLVRFI--------------------------------------SIAID 140
           E   +K + H+ LVR                                         +A  
Sbjct: 58  EANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQ 117

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           +A  + ++        +H D + +N+L+ + L   I DF LAR    + +   ++  G +
Sbjct: 118 IAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARL---IEDNEYTAREGAK 171

Query: 201 RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD---LNLHNFARMAF 257
             I +TA +       +   D +++GILL E+VT  +             NL    RM  
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVR 231

Query: 258 PNRVM-DIVNLVLL 270
           P+    ++  L+ L
Sbjct: 232 PDNCPEELYQLMRL 245

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 5e-30
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 46/209 (22%)

Query: 70  ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICH 128
             D F  I+ +G G+   V++     +  V+A K++ ++         + E + L     
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
             +V F                                       ++I V   L YL   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREK 123

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
            +  I+H D KPSN+L+++     + DF ++    +      S +N    T  Y + +  
Sbjct: 124 HK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLID------SMANSFVGTRSYMSPERL 175

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPID 240
            G+  S   D ++ G+ L+EM   R PI 
Sbjct: 176 QGTHYSVQSDIWSMGLSLVEMAVGRYPIP 204

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 3e-29
 Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 56/218 (25%)

Query: 59  IPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMA 118
           IP+E             L   +G G F  V+ G ++     VAIK L        ++F+ 
Sbjct: 14  IPRESLR----------LEVKLGQGCFGEVWMGTWNGTT-RVAIKTLKPGTMS-PEAFLQ 61

Query: 119 ECKALKNICHRNLVRF--------------------------------------ISIAID 140
           E + +K + H  LV+                                       + +A  
Sbjct: 62  EAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQ 121

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           +AS + Y+        +H D + +N+L+  +L   + DF LAR    + +   ++  G +
Sbjct: 122 IASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARL---IEDNEYTARQGAK 175

Query: 201 RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
             I +TA +  L    +   D +++GILL E+ T+ + 
Sbjct: 176 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRV 213

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 9e-27
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 46/203 (22%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
              +  IG G F  V+ G   LN+  VAIK +        + F+ E + +  + H  LV+
Sbjct: 7   LTFVQEIGSGQFGLVHLGY-WLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQ 64

Query: 134 FI--------------------------------------SIAIDVASALDYLHHHCQEL 155
                                                    + +DV   + YL   C   
Sbjct: 65  LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC--- 121

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           ++H D    N L+  +    + DF + RF   V +   +SS G +  + + + +    S 
Sbjct: 122 VIHRDLAARNCLVGENQVIKVSDFGMTRF---VLDDQYTSSTGTKFPVKWASPEVFSFSR 178

Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            S+  D +++G+L+ E+ +  K 
Sbjct: 179 YSSKSDVWSFGVLMWEVFSEGKI 201

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-26
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 46/203 (22%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
              +  +G G F  V  G +      VAIK++          F+ E K + N+ H  LV+
Sbjct: 6   LTFLKELGTGQFGVVKYGKWRGQY-DVAIKMIKEGSMS-EDEFIEEAKVMMNLSHEKLVQ 63

Query: 134 FI--------------------------------------SIAIDVASALDYLHHHCQEL 155
                                                    +  DV  A++YL       
Sbjct: 64  LYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ--- 120

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
            LH D    N L+++     + DF L+R+   V +   +SS G +  + ++  +  + S+
Sbjct: 121 FLHRDLAARNCLVNDQGVVKVSDFGLSRY---VLDDEYTSSVGSKFPVRWSPPEVLMYSK 177

Query: 216 VSTNGDAYNYGILLLEMVTRRKP 238
            S+  D + +G+L+ E+ +  K 
Sbjct: 178 FSSKSDIWAFGVLMWEIYSLGKM 200

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 2e-26
 Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 45/213 (21%)

Query: 67  LLKATDGFPLINL-IGVGSFDAVYQGVFDL--NRAVVAIKVLSIQ-CQGASKSFMAECKA 122
           L    D   + ++ +G G+F +V QGV+ +   +  VAIKVL     +  ++  M E + 
Sbjct: 3   LFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQI 62

Query: 123 LKNICHRNLVRFI-------------------------------------SIAIDVASAL 145
           +  + +  +VR I                                      +   V+  +
Sbjct: 63  MHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGM 122

Query: 146 DYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGY 205
            YL        +H D    NVLL N  +A I DF L++      +   ++ +  +  + +
Sbjct: 123 KYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGA-DDSYYTARSAGKWPLKW 178

Query: 206 TALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
            A +     + S+  D ++YG+ + E ++  + 
Sbjct: 179 YAPECINFRKFSSRSDVWSYGVTMWEALSYGQK 211

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 5e-26
 Identities = 41/214 (19%), Positives = 80/214 (37%), Gaps = 48/214 (22%)

Query: 67  LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVL-----SIQCQGASKSFMAECK 121
           +LK T+ F  I ++G G+F  VY+G++      V I V            A+K  + E  
Sbjct: 5   ILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 63

Query: 122 ALKNICHRNLVRF-------------------------------------ISIAIDVASA 144
            + ++ + ++ R                                      ++  + +A  
Sbjct: 64  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 123

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
           ++YL       ++H D    NVL+       I DF LA+     +   +  + G +  I 
Sbjct: 124 MNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLG--AEEKEYHAEGGKVPIK 178

Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           + AL+  L    +   D ++YG+ + E++T    
Sbjct: 179 WMALESILHRIYTHQSDVWSYGVTVWELMTFGSK 212

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 5e-26
 Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 50/230 (21%)

Query: 78  NLIGVGSFDAVYQGVFDLNRA---VVAIKVLS-IQCQGASKSFMAECKALKNICHRNLVR 133
            +IG G F  VY G    N       A+K L+ I   G    F+ E   +K+  H N++ 
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92

Query: 134 F---------------------------------------ISIAIDVASALDYLHHHCQE 154
                                                   I   + VA  + +L      
Sbjct: 93  LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK-- 150

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
             +H D    N +LD      + DF LAR   +    +  +  G +  + + AL+     
Sbjct: 151 -FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ 209

Query: 215 EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI 264
           + +T  D +++G+LL E++TR  P       D+N  +        R +  
Sbjct: 210 KFTTKSDVWSFGVLLWELMTRGAP----PYPDVNTFDITVYLLQGRRLLQ 255

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 6e-26
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 53/221 (23%)

Query: 64  YESL---LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAEC 120
           YE +   L   D + +I  +G G+F  VY+        + A KV+  + +   + +M E 
Sbjct: 1   YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI 60

Query: 121 KALKNICHRNLVRFI--------------------------------------SIAIDVA 142
             L +  H N+V+ +                                       +     
Sbjct: 61  DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTL 120

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRT 202
            AL+YLH +    I+H D K  N+L   D    + DF ++      +  T    +    T
Sbjct: 121 DALNYLHDNK---IIHRDLKAGNILFTLDGDIKLADFGVSAK----NTRTIQRRDSFIGT 173

Query: 203 IGYTALDYDLGSE-----VSTNGDAYNYGILLLEMVTRRKP 238
             + A +  +             D ++ GI L+EM     P
Sbjct: 174 PYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP 214

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 6e-26
 Identities = 43/239 (17%), Positives = 76/239 (31%), Gaps = 53/239 (22%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHR 129
           + + ++  IG GS+    +     +  ++  K L      +   +  ++E   L+ + H 
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 130 NLVRF-------------------------------------------ISIAIDVASALD 146
           N+VR+                                           + +   +  AL 
Sbjct: 64  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 123

Query: 147 YLHHH--CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
             H        +LH D KP+NV LD      +GDF LAR      N   S +     T  
Sbjct: 124 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI----LNHDTSFAKAFVGTPY 179

Query: 205 YTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL--NLHNFARMAFPNRV 261
           Y + +       +   D ++ G LL E+     P     + +L   +        P R 
Sbjct: 180 YMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRY 238

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-25
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 44/220 (20%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI-QCQGASKSFMAECKALKNICHRN 130
           + + L+  +G G++  V   V  +    VA+K++ + +     ++   E    K + H N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 131 LVRFI-------------------------------------SIAIDVASALDYLHHHCQ 153
           +V+F                                           + + + YLH    
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG- 123

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             I H D KP N+LLD      I DF LA   +   N  +   N +  T+ Y A +    
Sbjct: 124 --ITHRDIKPENLLLDERDNLKISDFGLATVFR--YNNRERLLNKMCGTLPYVAPELLKR 179

Query: 214 SEVSTNG-DAYNYGILLLEMVTRRKPIDFMFEGDLNLHNF 252
            E      D ++ GI+L  M+    P D   +      ++
Sbjct: 180 REFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDW 219

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-25
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 53/226 (23%)

Query: 49  QPLRLTLRNAIPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ 108
           + LR  +    PK+ Y               IG G+   VY  +       VAI+ +++Q
Sbjct: 7   EKLRSIVSVGDPKKKYT----------RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ 56

Query: 109 CQGASKSFMAECKALKNICHRNLVRFI--------------------------------- 135
            Q   +  + E   ++   + N+V ++                                 
Sbjct: 57  QQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEG 116

Query: 136 ---SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
              ++  +   AL++LH +    ++H D K  N+LL  D    + DF           P 
Sbjct: 117 QIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQ----ITPE 169

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           QS  + +  T  + A +           D ++ GI+ +EM+    P
Sbjct: 170 QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 1e-25
 Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 50/231 (21%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH 128
           + F +   +G G F  VY      ++ ++A+KVL    ++  G       E +   ++ H
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
            N++R                                       +   ++A+AL Y H  
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK 125

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               ++H D KP N+LL +     I DF  +           S    +  T+ Y   +  
Sbjct: 126 R---VIHRDIKPENLLLGSAGELKIADFGWSVHAPS------SRRTTLCGTLDYLPPEMI 176

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-LNLHNFARMAFPNRV 261
            G       D ++ G+L  E +  + P +     +     +     FP+ V
Sbjct: 177 EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV 227

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (251), Expect = 3e-25
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 50/232 (21%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
               + + +G G +  VY+GV+      VA+K L        + F+ E   +K I H NL
Sbjct: 17  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNL 75

Query: 132 VRF---------------------------------------ISIAIDVASALDYLHHHC 152
           V+                                        + +A  ++SA++YL    
Sbjct: 76  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN 135

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
               +H D    N L+  +    + DF L+R    ++  T ++  G +  I +TA +   
Sbjct: 136 ---FIHRDLAARNCLVGENHLVKVADFGLSRL---MTGDTYTAHAGAKFPIKWTAPESLA 189

Query: 213 GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI 264
            ++ S   D + +G+LL E+ T            ++L     +   +  M+ 
Sbjct: 190 YNKFSIKSDVWAFGVLLWEIATYGMS----PYPGIDLSQVYELLEKDYRMER 237

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 9e-25
 Identities = 40/212 (18%), Positives = 81/212 (38%), Gaps = 47/212 (22%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLN----RAVVAIKVLSIQC-QGASKSFMAECKALKNICH 128
                +IG G F  VY+G+   +       VAIK L     +     F+ E   +    H
Sbjct: 9   VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 68

Query: 129 RNLVRFI--------------------------------------SIAIDVASALDYLHH 150
            N++R                                         +   +A+ + YL +
Sbjct: 69  HNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN 128

Query: 151 HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                 +H D    N+L++++L   + DF L+R  ++    T ++S G +  I +TA + 
Sbjct: 129 MN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTS-GGKIPIRWTAPEA 184

Query: 211 DLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM 242
               + ++  D +++GI++ E++T  +   + 
Sbjct: 185 ISYRKFTSASDVWSFGIVMWEVMTYGERPYWE 216

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 9e-25
 Identities = 50/242 (20%), Positives = 82/242 (33%), Gaps = 65/242 (26%)

Query: 60  PKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSF 116
           P++ +            +  IG GSF AVY      N  VVAIK +S    Q     +  
Sbjct: 13  PEKLFS----------DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDI 62

Query: 117 MAECKALKNICHRNLVRFI-------------------------------------SIAI 139
           + E + L+ + H N +++                                      ++  
Sbjct: 63  IKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTH 122

Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
                L YLH H    ++H D K  N+LL       +GDF  A             +N  
Sbjct: 123 GALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAP--------ANSF 171

Query: 200 RRTIGYTALDYDLGSEVSTNG---DAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA 256
             T  + A +  L  +        D ++ GI  +E+  R+ P+  M      L++ A+  
Sbjct: 172 VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA-LYHIAQNE 230

Query: 257 FP 258
            P
Sbjct: 231 SP 232

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.8 bits (243), Expect = 3e-24
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 54/205 (26%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
             L+  IG G F  V  G  D     VA+K +       +++F+AE   +  + H NLV+
Sbjct: 9   LKLLQTIGKGEFGDVMLG--DYRGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQ 64

Query: 134 FI----------------------------------------SIAIDVASALDYLHHHCQ 153
            +                                          ++DV  A++YL  +  
Sbjct: 65  LLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN- 123

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
              +H D    NVL+  D  A + DF L +          S+ +  +  + +TA +    
Sbjct: 124 --FVHRDLAARNVLVSEDNVAKVSDFGLTKEA-------SSTQDTGKLPVKWTAPEALRE 174

Query: 214 SEVSTNGDAYNYGILLLEMVTRRKP 238
            + ST  D +++GILL E+ +  + 
Sbjct: 175 KKFSTKSDVWSFGILLWEIYSFGRV 199

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 3e-24
 Identities = 54/305 (17%), Positives = 88/305 (28%), Gaps = 65/305 (21%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           L   IG G F  V++G        VA+K+ S + +  S    AE      + H N++ FI
Sbjct: 7   LQESIGKGRFGEVWRGK--WRGEEVAVKIFSSR-EERSWFREAEIYQTVMLRHENILGFI 63

Query: 136 ----------------------------------------SIAIDVASALDYLHHHCQEL 155
                                                    +A+  AS L +LH      
Sbjct: 64  AADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGT 123

Query: 156 -----ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                I H D K  N+L+  +    I D  LA      ++    + N    T  Y A + 
Sbjct: 124 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEV 183

Query: 211 DLGSEVSTNGDA------YNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI 264
              S    + ++      Y  G++  E+  R        +  L  ++          M  
Sbjct: 184 LDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRK 243

Query: 265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDL 324
           V         +     S            E L  M +I   C   +   R+        L
Sbjct: 244 VVCEQKLRPNIPNRWQSC-----------EALRVMAKIMRECWYANGAARLTALRIKKTL 292

Query: 325 QSVNN 329
             ++ 
Sbjct: 293 SQLSQ 297

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.9 bits (243), Expect = 3e-24
 Identities = 34/201 (16%), Positives = 71/201 (35%), Gaps = 44/201 (21%)

Query: 78  NLIGVGSFDAVYQGVFDLNRA--VVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVR 133
             +G G+F  V +G + + +    VA+K+L  +          +AE   ++ + +  +VR
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVR 72

Query: 134 FI------------------------------------SIAIDVASALDYLHHHCQELIL 157
            I                                     +   V+  + YL        +
Sbjct: 73  MIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FV 129

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D    NVLL    +A I DF L++  +        +    +  + + A +     + S
Sbjct: 130 HRDLAARNVLLVTQHYAKISDFGLSKALRA-DENYYKAQTHGKWPVKWYAPECINYYKFS 188

Query: 218 TNGDAYNYGILLLEMVTRRKP 238
           +  D +++G+L+ E  +  + 
Sbjct: 189 SKSDVWSFGVLMWEAFSYGQK 209

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 8e-24
 Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 39/207 (18%)

Query: 69  KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKN 125
           K  + F    ++G GSF  V            AIK+L    I  +        E   +  
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 126 ICHRNLVRFIS----------------------------------IAIDVASALDYLHHH 151
           + H   V+                                          A  +  L + 
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL 124

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
             + I+H D KP N+LL+ D+   I DF  A+     S   +++S     T  Y + +  
Sbjct: 125 HGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANS--FVGTAQYVSPELL 182

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKP 238
                  + D +  G ++ ++V    P
Sbjct: 183 TEKSACKSSDLWALGCIIYQLVAGLPP 209

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 2e-23
 Identities = 47/234 (20%), Positives = 71/234 (30%), Gaps = 52/234 (22%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVR 133
               IG GSF  VY+G+       VA   L  +   +   + F  E + LK + H N+VR
Sbjct: 13  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVR 72

Query: 134 FI-----------------------------------------SIAIDVASALDYLHHHC 152
           F                                          S    +   L +LH   
Sbjct: 73  FYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT 132

Query: 153 QELILHCDPKPSNVLLDNDLF-AHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
              I+H D K  N+ +        IGD  LA  ++       S +  V  T  + A +  
Sbjct: 133 PP-IIHRDLKCDNIFITGPTGSVKIGDLGLATLKR------ASFAKAVIGTPEFMAPEM- 184

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIV 265
              +   + D Y +G+ +LEM T   P                   P     + 
Sbjct: 185 YEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVA 238

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 6e-23
 Identities = 47/256 (18%), Positives = 90/256 (35%), Gaps = 61/256 (23%)

Query: 59  IPKEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNR---AVVAIKVLS-IQCQGASK 114
           I +E  E          L   IG G F  V+QG++         VAIK           +
Sbjct: 4   IQRERIE----------LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVRE 53

Query: 115 SFMAECKALKNICHRNLVRF-------------------------------------ISI 137
            F+ E   ++   H ++V+                                      I  
Sbjct: 54  KFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILY 113

Query: 138 AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN 197
           A  +++AL YL        +H D    NVL+ ++    +GDF L+R+   + + T   ++
Sbjct: 114 AYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRY---MEDSTYYKAS 167

Query: 198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRK-PIDFMFEGDL--NLHNFAR 254
             +  I + A +       ++  D + +G+ + E++     P   +   D+   + N  R
Sbjct: 168 KGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGER 227

Query: 255 MAFPNRV-MDIVNLVL 269
           +  P      + +L+ 
Sbjct: 228 LPMPPNCPPTLYSLMT 243

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (232), Expect = 1e-22
 Identities = 45/210 (21%), Positives = 70/210 (33%), Gaps = 47/210 (22%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDL---NRAVVAIKVLS---IQCQGASKSFMAECKALKN 125
               L+  +G GSF  V +G +D        VA+K L    +    A   F+ E  A+ +
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 126 ICHRNLVRFI-------------------------------------SIAIDVASALDYL 148
           + HRNL+R                                         A+ VA  + YL
Sbjct: 68  LDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL 127

Query: 149 HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL 208
                   +H D    N+LL       IGDF L R   + ++         +    + A 
Sbjct: 128 ESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQ-NDDHYVMQEHRKVPFAWCAP 183

Query: 209 DYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           +       S   D + +G+ L EM T  + 
Sbjct: 184 ESLKTRTFSHASDTWMFGVTLWEMFTYGQE 213

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 92.8 bits (230), Expect = 7e-22
 Identities = 31/207 (14%), Positives = 61/207 (29%), Gaps = 48/207 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
           D + +   +G G+F  V++          A K +    +   ++   E + +  + H  L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 132 VRF--------------------------------------ISIAIDVASALDYLHHHCQ 153
           V                                        +     V   L ++H +  
Sbjct: 86  VNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN- 144

Query: 154 ELILHCDPKPSNVLLDNDLFAHI--GDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
              +H D KP N++        +   DF L           + S      T  + A +  
Sbjct: 145 --YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP-----KQSVKVTTGTAEFAAPEVA 197

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKP 238
            G  V    D ++ G+L   +++   P
Sbjct: 198 EGKPVGYYTDMWSVGVLSYILLSGLSP 224

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.3 bits (226), Expect = 2e-21
 Identities = 40/204 (19%), Positives = 68/204 (33%), Gaps = 44/204 (21%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH 128
             F ++  +G GSF  V+      N    A+KVL    +      +    E   L  + H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 129 RNLVRFISIAID----------------------------------VASALDYLHHHCQE 154
             ++R      D                                   A     L +   +
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK 123

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            I++ D KP N+LLD +    I DF  A++           +  +  T  Y A +     
Sbjct: 124 DIIYRDLKPENILLDKNGHIKITDFGFAKY-------VPDVTYTLCGTPDYIAPEVVSTK 176

Query: 215 EVSTNGDAYNYGILLLEMVTRRKP 238
             + + D +++GIL+ EM+    P
Sbjct: 177 PYNKSIDWWSFGILIYEMLAGYTP 200

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 89.3 bits (221), Expect = 1e-20
 Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 52/224 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
           D + ++  +G G+F  V++ V      V   K ++        +   E   +  + H  L
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 132 VRF--------------------------------------ISIAIDVASALDYLHHHCQ 153
           +                                        I+        L ++H H  
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS- 147

Query: 154 ELILHCDPKPSNVLLDNDLFAHI--GDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
             I+H D KP N++ +    + +   DF LA                   T  + A +  
Sbjct: 148 --IVHLDIKPENIMCETKKASSVKIIDFGLATKLNP-----DEIVKVTTATAEFAAPEIV 200

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
               V    D +  G+L   +++   P    F G+ +L     +
Sbjct: 201 DREPVGFYTDMWAIGVLGYVLLSGLSP----FAGEDDLETLQNV 240

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (217), Expect = 3e-20
 Identities = 49/237 (20%), Positives = 80/237 (33%), Gaps = 46/237 (19%)

Query: 66  SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS-IQCQGASKSFMAECKALK 124
            +      +  ++ IG G++  V     ++N+  VAIK +S  + Q   +  + E K L 
Sbjct: 2   QVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILL 61

Query: 125 NICHRNLVRFI----------------------------------------SIAIDVASA 144
              H N++                                                +   
Sbjct: 62  RFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRG 121

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIG 204
           L Y+H      +LH D KPSN+LL+      I DF LAR      +           T  
Sbjct: 122 LKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADP-DHDHTGFLTEYVATRW 177

Query: 205 YTALDYDLGSEVSTN-GDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR 260
           Y A +  L S+  T   D ++ G +L EM++ R         D   H    +  P++
Sbjct: 178 YRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQ 234

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (214), Expect = 8e-20
 Identities = 48/236 (20%), Positives = 79/236 (33%), Gaps = 57/236 (24%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNIC- 127
           + F L  ++G GSF  V+   F       AIK L    +      +  M E + L     
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 128 HRNLVRFI-------------------------------------SIAIDVASALDYLHH 150
           H  L                                           A ++   L +LH 
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS 121

Query: 151 HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDY 210
                I++ D K  N+LLD D    I DF + +     +    + +N    T  Y A + 
Sbjct: 122 KG---IVYRDLKLDNILLDKDGHIKIADFGMCKE----NMLGDAKTNTFCGTPDYIAPEI 174

Query: 211 DLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-----LNLHNFARMAFPNRV 261
            LG + + + D +++G+LL EM+  + P    F G       +        +P  +
Sbjct: 175 LLGQKYNHSVDWWSFGVLLYEMLIGQSP----FHGQDEEELFHSIRMDNPFYPRWL 226

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 86.0 bits (212), Expect = 8e-20
 Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 52/220 (23%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNIC 127
           +D + L  ++G G    V+          VA+KVL     +       F  E +    + 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 128 HRNLVRF-----------------------------------------ISIAIDVASALD 146
           H  +V                                           I +  D   AL+
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 125

Query: 147 YLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
           + H +    I+H D KP+N+++       + DF +AR   + S  + + +  V  T  Y 
Sbjct: 126 FSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIAD-SGNSVTQTAAVIGTAQYL 181

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD 246
           + +   G  V    D Y+ G +L E++T   P    F GD
Sbjct: 182 SPEQARGDSVDARSDVYSLGCVLYEVLTGEPP----FTGD 217

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 85.3 bits (210), Expect = 2e-19
 Identities = 41/225 (18%), Positives = 79/225 (35%), Gaps = 40/225 (17%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHR 129
           + +  +  IG G++  VY+   +      A+K + ++   +G   + + E   LK + H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGE-TFALKKIRLEKEDEGIPSTTIREISILKELKHS 60

Query: 130 NLVRFI----------------------------------SIAIDVASALDYLHHHCQEL 155
           N+V+                                    +    +   L+ + +     
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR 120

Query: 156 ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSE 215
           +LH D KP N+L++ +    I DF LAR       P +  ++ +               +
Sbjct: 121 VLHRDLKPQNLLINREGELKIADFGLARA---FGIPVRKYTHEIVTLWYRAPDVLMGSKK 177

Query: 216 VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNR 260
            ST  D ++ G +  EMV        + E D  +  F  +  PN 
Sbjct: 178 YSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNS 222

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 2e-19
 Identities = 44/224 (19%), Positives = 75/224 (33%), Gaps = 65/224 (29%)

Query: 72  DGFPLINLIGVGSFDAVYQGVF--DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNIC- 127
           +     ++IG G+F  V +     D  R   AIK +     +   + F  E + L  +  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 128 HRNLVRFI---------------------------------------------------- 135
           H N++  +                                                    
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 136 -SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
              A DVA  +DYL        +H D    N+L+  +  A I DF L+R ++        
Sbjct: 130 LHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSRGQE-----VYV 181

Query: 195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
                R  + + A++    S  +TN D ++YG+LL E+V+    
Sbjct: 182 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT 225

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 2e-19
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 42/218 (19%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNL 131
           +  +  IG G++  V++        +VA+K + +    +G   S + E   LK + H+N+
Sbjct: 4   YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI 63

Query: 132 VRFISIAID----------------------------------VASALDYLHHHCQELIL 157
           VR   +                                     +   L  L       +L
Sbjct: 64  VRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVL 123

Query: 158 HCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVS 217
           H D KP N+L++ +    + +F LAR       P +  S  V                 S
Sbjct: 124 HRDLKPQNLLINRNGELKLANFGLARA---FGIPVRCYSAEVVTLWYRPPDVLFGAKLYS 180

Query: 218 TNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           T+ D ++ G +  E+    +P+   F G+       R+
Sbjct: 181 TSIDMWSAGCIFAELANAGRPL---FPGNDVDDQLKRI 215

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 3e-19
 Identities = 48/221 (21%), Positives = 80/221 (36%), Gaps = 44/221 (19%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHR 129
           + F  +  IG G++  VY+    L   VVA+K + +    +G   + + E   LK + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 130 NLVRFISIAID-----------------------------------VASALDYLHHHCQE 154
           N+V+ + +                                      +   L  L      
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH 121

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            +LH D KP N+L++ +    + DF LAR       P ++ ++ V               
Sbjct: 122 RVLHRDLKPQNLLINTEGAIKLADFGLARA---FGVPVRTYTHEVVTLWYRAPEILLGCK 178

Query: 215 EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
             ST  D ++ G +  EMVTRR      F GD  +    R+
Sbjct: 179 YYSTAVDIWSLGCIFAEMVTRRAL----FPGDSEIDQLFRI 215

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.8 bits (209), Expect = 5e-19
 Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 55/234 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI------QCQGASKSFMAECKALKN 125
           + F +  +IG G F  VY         + A+K L        Q +  + +       +  
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 126 ICHRNLVRFI-------------------------------------SIAIDVASALDYL 148
                +V                                          A ++   L+++
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM 123

Query: 149 HHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL 208
           H+     +++ D KP+N+LLD      I D  LA         ++   +    T GY A 
Sbjct: 124 HNRF---VVYRDLKPANILLDEHGHVRISDLGLACD------FSKKKPHASVGTHGYMAP 174

Query: 209 DYDL-GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRV 261
           +    G    ++ D ++ G +L +++    P  F      + H   RM     V
Sbjct: 175 EVLQKGVAYDSSADWFSLGCMLFKLLRGHSP--FRQHKTKDKHEIDRMTLTMAV 226

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 5e-19
 Identities = 49/227 (21%), Positives = 81/227 (35%), Gaps = 49/227 (21%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNL 131
           +  +  IG G+F  V++         VA+K + ++   +G   + + E K L+ + H N+
Sbjct: 12  YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 71

Query: 132 VRFISIAIDVASA------------------------------------------LDYLH 149
           V  I I    AS                                           L+ L+
Sbjct: 72  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY 131

Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
           +  +  ILH D K +NVL+  D    + DF LAR      N   +       T+ Y   +
Sbjct: 132 YIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 191

Query: 210 YDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
             LG  +     D +  G ++ EM TR        +G+   H  A +
Sbjct: 192 LLLGERDYGPPIDLWGAGCIMAEMWTRSPI----MQGNTEQHQLALI 234

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 8e-19
 Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 50/232 (21%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH 128
           + F  + L+G G+F  V            A+K+L    I  +      + E + L+N  H
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 129 RNLVRFISIAID----------------------------------VASALDYLHHHCQE 154
             L                                            A  +  L +    
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR 124

Query: 155 LILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGS 214
            +++ D K  N++LD D    I DF L +          ++      T  Y A +    +
Sbjct: 125 DVVYRDIKLENLMLDKDGHIKITDFGLCKE----GISDGATMKTFCGTPEYLAPEVLEDN 180

Query: 215 EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-----LNLHNFARMAFPNRV 261
           +     D +  G+++ EM+  R P    F          L     + FP  +
Sbjct: 181 DYGRAVDWWGLGVVMYEMMCGRLP----FYNQDHERLFELILMEEIRFPRTL 228

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.2 bits (205), Expect = 1e-18
 Identities = 38/206 (18%), Positives = 62/206 (30%), Gaps = 43/206 (20%)

Query: 71  TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-CQGASKSFMAECKALKNICHR 129
            D +   +++G G+F  V        + +VAIK ++ +  +G   S   E   L  I H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 130 NLVRFI-------------------------------------SIAIDVASALDYLHHHC 152
           N+V                                         +   V  A+ YLH   
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 127

Query: 153 QELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDL 212
                          LD D    I DF L++          S  +    T GY A +   
Sbjct: 128 IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP-----GSVLSTACGTPGYVAPEVLA 182

Query: 213 GSEVSTNGDAYNYGILLLEMVTRRKP 238
               S   D ++ G++   ++    P
Sbjct: 183 QKPYSKAVDCWSIGVIAYILLCGYPP 208

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 1e-18
 Identities = 47/223 (21%), Positives = 81/223 (36%), Gaps = 54/223 (24%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-----QGASKSFMAECKALKNICHRN 130
            ++ +G G F  VY+        +VAIK + +        G +++ + E K L+ + H N
Sbjct: 2   KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN 61

Query: 131 LVRFI-------------------------------------SIAIDVASALDYLHHHCQ 153
           ++  +                                     +  +     L+YLH H  
Sbjct: 62  IIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW- 120

Query: 154 ELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLG 213
             ILH D KP+N+LLD +    + DF LA+           +      T  Y A +   G
Sbjct: 121 --ILHRDLKPNNLLLDENGVLKLADFGLAKS----FGSPNRAYTHQVVTRWYRAPELLFG 174

Query: 214 SEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           + +     D +  G +L E++ R         GD +L    R+
Sbjct: 175 ARMYGVGVDMWAVGCILAELLLRVPF----LPGDSDLDQLTRI 213

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 81.3 bits (200), Expect = 3e-18
 Identities = 29/215 (13%), Positives = 65/215 (30%), Gaps = 51/215 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI---------QCQGASKSFMAECKA 122
           + +    ++G G    V + +        A+K++ +         + Q   ++ + E   
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 123 LKNI-CHRNLVRFI-------------------------------------SIAIDVASA 144
           L+ +  H N+++                                        I   +   
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV 122

Query: 145 LDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS-SNGVRRTI 203
           +  LH      I+H D KP N+LLD+D+   + DF  +          +   +       
Sbjct: 123 ICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPE 179

Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
                  D         D ++ G+++  ++    P
Sbjct: 180 IIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 214

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 5e-18
 Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
           +  A  VA  +++L        +H D    NVL+ +     I DF LAR     SN    
Sbjct: 167 LCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVR 223

Query: 195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR 254
                R  + + A +       +   D ++YGILL E+ +        + G     NF +
Sbjct: 224 G--NARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVN---PYPGIPVDANFYK 278

Query: 255 MAFPNRVMDI 264
           +      MD 
Sbjct: 279 LIQNGFKMDQ 288

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 2e-17
 Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 49/207 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNL 131
           + + +   +G G F  V++ V   ++     K + ++          E   L    HRN+
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNI 63

Query: 132 VRF--------------------------------------ISIAIDVASALDYLHHHCQ 153
           +                                        +S    V  AL +LH H  
Sbjct: 64  LHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN- 122

Query: 154 ELILHCDPKPSNVLLDNDLFAH--IGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
             I H D +P N++      +   I +F  AR  +   N        +     Y A +  
Sbjct: 123 --IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL-----LFTAPEYYAPEVH 175

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKP 238
               VST  D ++ G L+  +++   P
Sbjct: 176 QHDVVSTATDMWSLGTLVYVLLSGINP 202

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.5 bits (195), Expect = 2e-17
 Identities = 35/240 (14%), Positives = 65/240 (27%), Gaps = 66/240 (27%)

Query: 63  YYESLLKATDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQC-QGASKSF 116
              SL    +    +  IG G+F  V+Q             +VA+K+L  +        F
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63

Query: 117 MAECKALKNICHRNLVRFI----------------------------------------- 135
             E   +    + N+V+ +                                         
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 123

Query: 136 ----------SIAIDVASALDYLHHHCQEL-------ILHCDPKPSNVLLDNDLFAHIGD 178
                        +  A  L         +        +H D    N L+  ++   I D
Sbjct: 124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIAD 183

Query: 179 FELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
           F L+R     S     +       I +   +    +  +T  D + YG++L E+ +    
Sbjct: 184 FGLSRNIY--SADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ 241

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 2e-17
 Identities = 41/246 (16%), Positives = 75/246 (30%), Gaps = 61/246 (24%)

Query: 72  DGFPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLSI-QCQGASKSFMAECKALKN 125
           +       +G G+F  V +              VA+K+L         ++ M+E K L  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 126 IC-HRNLVRFI---------------------------------------------SIAI 139
           +  H N+V  +                                              +A+
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL 142

Query: 140 DVASALDYLHHHCQEL-------ILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT 192
           D+   L + +   + +        +H D    N+LL +     I DF LAR  +  SN  
Sbjct: 143 DLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYV 202

Query: 193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNF 252
              +   R  + + A +       +   D ++YGI L E+ +           D   +  
Sbjct: 203 VKGN--ARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKM 260

Query: 253 ARMAFP 258
            +  F 
Sbjct: 261 IKEGFR 266

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.7 bits (193), Expect = 3e-17
 Identities = 45/243 (18%), Positives = 78/243 (32%), Gaps = 53/243 (21%)

Query: 68  LKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC 127
           L+  + + L   IG GSF  +Y G        VAIK+  ++ +        E K  K + 
Sbjct: 3   LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQ 60

Query: 128 HRNLVRFI--------------------------------------SIAIDVASALDYLH 149
               +  I                                       +A  + S ++Y+H
Sbjct: 61  GGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH 120

Query: 150 HHCQELILHCDPKPSNVL---LDNDLFAHIGDFELARFRQEVSNPTQS---SSNGVRRTI 203
                  +H D KP N L          +I DF LA+  ++           +  +  T 
Sbjct: 121 SKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTA 177

Query: 204 GYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN----LHNFARMAFPN 259
            Y +++  LG E S   D  + G +L+       P   +            +  +M+ P 
Sbjct: 178 RYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI 237

Query: 260 RVM 262
            V+
Sbjct: 238 EVL 240

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 4e-17
 Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 61/236 (25%)

Query: 69  KATDGFPLINLIGVGSFDAVYQGVFDLNRA-VVAIKVLSIQC--QGASKSFMAECKALKN 125
           +A   +  +  IG G++  V++     N    VA+K + +Q   +G   S + E   L++
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 126 IC---HRNLVRFI-------------------------------------------SIAI 139
           +    H N+VR                                              +  
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 140 DVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGV 199
            +   LD+LH H    ++H D KP N+L+ +     + DF LAR        T      V
Sbjct: 124 QLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS-----V 175

Query: 200 RRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
             T+ Y A +  L S  +T  D ++ G +  EM  R+      F G  ++    ++
Sbjct: 176 VVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPL----FRGSSDVDQLGKI 227

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.9 bits (191), Expect = 9e-17
 Identities = 41/235 (17%), Positives = 73/235 (31%), Gaps = 59/235 (25%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS---IQCQGASKSFMAECKALKNICH 128
           D F  I  +G GSF  V       +    A+K+L    +      +  + E + L+ +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 129 RNLVRFI-------------------------------------SIAIDVASALDYLHHH 151
             LV+                                         A  +    +YLH  
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL 160

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
               +++ D KP N+L+D   +  + DF  A+         +  +  +  T    A +  
Sbjct: 161 D---LIYRDLKPENLLIDQQGYIQVTDFGFAKRV-------KGRTWTLCGTPEALAPEII 210

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-----LNLHNFARMAFPNRV 261
           L    +   D +  G+L+ EM     P    F  D            ++ FP+  
Sbjct: 211 LSKGYNKAVDWWALGVLIYEMAAGYPP----FFADQPIQIYEKIVSGKVRFPSHF 261

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 77.2 bits (189), Expect = 1e-16
 Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 51/218 (23%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRFI 135
           +   IG GSF  +++G   LN   VAIK    +    +     E +  K +     +  +
Sbjct: 9   VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNV 66

Query: 136 --------------------------------------SIAIDVASALDYLHHHCQELIL 157
                                                   A  + + +  +H      ++
Sbjct: 67  YYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LV 123

Query: 158 HCDPKPSNVLLDNDLFAHIG-----DFELARFRQEVSNPTQS---SSNGVRRTIGYTALD 209
           + D KP N L+      +       DF + +F ++              +  T  Y +++
Sbjct: 124 YRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSIN 183

Query: 210 YDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDL 247
             LG E S   D    G + +  +    P   +     
Sbjct: 184 THLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATN 221

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 1e-16
 Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 58/218 (26%)

Query: 74  FPLINLIGVGSFDAVYQGVF-----DLNRAVVAIKVLS-IQCQGASKSFMAECKALKNIC 127
             +   +G GSF  VY+GV      D     VAIK ++          F+ E   +K   
Sbjct: 22  ITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFN 81

Query: 128 HRNLVRF-----------------------------------------------ISIAID 140
             ++VR                                                I +A +
Sbjct: 82  CHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGE 141

Query: 141 VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVR 200
           +A  + YL+ +     +H D    N ++  D    IGDF + R   E             
Sbjct: 142 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE--TDYYRKGGKGL 196

Query: 201 RTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
             + + + +       +T  D +++G++L E+ T  + 
Sbjct: 197 LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQ 234

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 62/229 (27%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVR 133
           +    +IG GSF  VYQ     +  +VAIK +        +    E + ++ + H N+VR
Sbjct: 22  YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD----KRFKNRELQIMRKLDHCNIVR 77

Query: 134 FI----------------------------------------------SIAIDVASALDY 147
                                                                +  +L Y
Sbjct: 78  LRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAY 137

Query: 148 LHHHCQELILHCDPKPSNVLLDNDLFAH-IGDFELARFRQEVSNPTQSSSNGVRRTIGYT 206
           +H      I H D KP N+LLD D     + DF  A+         + + + +       
Sbjct: 138 IHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ----LVRGEPNVSYICSRYYRA 190

Query: 207 ALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
                  ++ +++ D ++ G +L E++  +      F GD  +     +
Sbjct: 191 PELIFGATDYTSSIDVWSAGCVLAELLLGQPI----FPGDSGVDQLVEI 235

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 7e-16
 Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 53/228 (23%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVL------SIQCQGASKSFMAECKALKN 125
           D +     +G G F  V +          A K +      S +   + +    E   LK 
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 126 ICHRNLVRFISIAID----------------------------------VASALDYLHHH 151
           I H N++    +  +                                  +   L+ +++ 
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYL 129

Query: 152 CQELILHCDPKPSNVLLDND----LFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTA 207
               I H D KP N++L +         I DF LA           +    +  T  + A
Sbjct: 130 HSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF-----GNEFKNIFGTPEFVA 184

Query: 208 LDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
            +      +    D ++ G++   +++   P    F GD      A +
Sbjct: 185 PEIVNYEPLGLEADMWSIGVITYILLSGASP----FLGDTKQETLANV 228

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 1e-15
 Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 51/229 (22%)

Query: 72  DGFPLINLIGVGSFDAVYQGVFDLNR---AVVAIKVLS----IQCQGASKSFMAECKALK 124
           + F L+ ++G G++  V+            + A+KVL     +Q    ++    E + L+
Sbjct: 24  ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 83

Query: 125 NICHRNLVRFI-----------------------------------SIAIDVASALDYLH 149
           +I     +  +                                    + I V   +  L 
Sbjct: 84  HIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALE 143

Query: 150 HHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALD 209
           H  +  I++ D K  N+LLD++    + DF L++              G   TI Y A D
Sbjct: 144 HLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCG---TIEYMAPD 200

Query: 210 YDLGSEVSTNG--DAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA 256
              G +   +   D ++ G+L+ E++T   P    F  D   ++ A ++
Sbjct: 201 IVRGGDSGHDKAVDWWSLGVLMYELLTGASP----FTVDGEKNSQAEIS 245

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 1e-15
 Identities = 48/237 (20%), Positives = 77/237 (32%), Gaps = 60/237 (25%)

Query: 63  YYESLLKATDGFP----LINLIGVGSFDAVYQGVFDLNRAVVAIKVL--SIQCQGASKSF 116
           Y + + K           +  +G G++ AV   V     A VAIK L    Q +  +K  
Sbjct: 5   YRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRA 64

Query: 117 MAECKALKNICHRNLVRFI----------------------------------------- 135
             E + LK++ H N++  +                                         
Sbjct: 65  YRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQ 124

Query: 136 SIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS 195
            +   +   L Y+H        H D KP N+ ++ D    I DF LAR          S 
Sbjct: 125 FLVYQMLKGLRYIHAAGII---HRDLKPGNLAVNEDCELKILDFGLARQ-------ADSE 174

Query: 196 SNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHN 251
             G   T  Y A +  L     +   D ++ G ++ EM+T +    F     L+   
Sbjct: 175 MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTL--FKGSDHLDQLK 229

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 7e-15
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 8/134 (5%)

Query: 135 ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQS 194
           I  +  VA  +++L        +H D    N+LL       I DF LAR      +P   
Sbjct: 137 ICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIY--KDPDYV 191

Query: 195 SSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFAR 254
                R  + + A +       +   D +++G+LL E+ +        + G      F R
Sbjct: 192 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS---PYPGVKIDEEFCR 248

Query: 255 MAFPNRVMDIVNLV 268
                  M   +  
Sbjct: 249 RLKEGTRMRAPDYT 262

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 1e-14
 Identities = 44/234 (18%), Positives = 73/234 (31%), Gaps = 62/234 (26%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC------QGASKSFMAECKALKNI--C 127
           +  L+G G F +VY G+   +   VAIK +                   E   LK +   
Sbjct: 8   VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG 67

Query: 128 HRNLVRFI--------------------------------------SIAIDVASALDYLH 149
              ++R +                                      S    V  A+ + H
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 127

Query: 150 HHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTAL 208
           +     +LH D K  N+L+D N     + DF      ++      +       T  Y+  
Sbjct: 128 NCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKD------TVYTDFDGTRVYSPP 178

Query: 209 DYDLGSEVSTNG-DAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRV 261
           ++             ++ GILL +MV    P    FE D  +    ++ F  RV
Sbjct: 179 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIP----FEHDEEIIR-GQVFFRQRV 227

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 2e-14
 Identities = 45/239 (18%), Positives = 83/239 (34%), Gaps = 58/239 (24%)

Query: 61  KEYYESLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--IQCQGASKSFMA 118
           +E  +++ +  + +  ++ +G G++ +V           VA+K LS   Q    +K    
Sbjct: 7   QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYR 66

Query: 119 ECKALKNICHRNLVRFI-----------------------------------------SI 137
           E + LK++ H N++  +                                          +
Sbjct: 67  ELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFL 126

Query: 138 AIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN 197
              +   L Y+H        H D KPSN+ ++ D    I DF LAR        T     
Sbjct: 127 IYQILRGLKYIHSADII---HRDLKPSNLAVNEDCELKILDFGLARH-------TDDEMT 176

Query: 198 GVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           G   T  Y A +  L     +   D ++ G ++ E++T R      F G  ++     +
Sbjct: 177 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL----FPGTDHIDQLKLI 231

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 69.9 bits (170), Expect = 4e-14
 Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 56/240 (23%)

Query: 60  PKEY--YESLLKAT---DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASK 114
           P+EY  YES +      D + L+  +G G +  V++ +   N   V +K+L        K
Sbjct: 18  PREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILK---PVKKK 74

Query: 115 SFMAECKALKNI-CHRNLVRFI------------------------------------SI 137
               E K L+N+    N++                                         
Sbjct: 75  KIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFY 134

Query: 138 AIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARFRQEVSNPTQSSS 196
             ++  ALDY H      I+H D KP NV++D++     + D+ LA F     +P Q  +
Sbjct: 135 MYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY----HPGQEYN 187

Query: 197 NGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMA 256
             V                   + D ++ G +L  M+ R++P    F G  N     R+A
Sbjct: 188 VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF---FHGHDNYDQLVRIA 244

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 6e-14
 Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 54/224 (24%)

Query: 74  FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLS--IQCQGASKSFMAECKALKNICHRNL 131
           +  +  IG G+   V      +    VAIK LS   Q Q  +K    E   +K + H+N+
Sbjct: 19  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI 78

Query: 132 VRFI----------------------------------------SIAIDVASALDYLHHH 151
           +  +                                         +   +   + +LH  
Sbjct: 79  ISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA 138

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
                 H D KPSN+++ +D    I DF LAR        T         T  Y A +  
Sbjct: 139 GII---HRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTP-----YVVTRYYRAPEVI 190

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
           LG     N D ++ G ++ EMV  +      F G   +  + ++
Sbjct: 191 LGMGYKENVDIWSVGCIMGEMVRHKIL----FPGRDYIDQWNKV 230

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 6e-14
 Identities = 35/239 (14%), Positives = 66/239 (27%), Gaps = 71/239 (29%)

Query: 59  IPKEYYESLLKATDGFPLINLIGVGSFDAVYQGV-------FDLNRAVVAIKVLSIQ-CQ 110
           +P++             L   +G G+F  V                  VA+K+L     +
Sbjct: 10  LPRDRLV----------LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATE 59

Query: 111 GASKSFMAECKALKNIC-HRNLVRFISIAID----------------------------- 140
                 ++E + +K I  H+N++  +                                  
Sbjct: 60  KDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLE 119

Query: 141 ---------------------VASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDF 179
                                       + +   +  +H D    NVL+  D    I DF
Sbjct: 120 YSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADF 179

Query: 180 ELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKP 238
            LAR            +   R  + + A +       +   D +++G+LL E+ T    
Sbjct: 180 GLARDIHH--IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS 236

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 1e-13
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 64/224 (28%)

Query: 79  LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRFI-- 135
           ++G+G    V Q      +   A+K+L             E +         ++VR +  
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQ-----DCPKARREVELHWRASQCPHIVRIVDV 73

Query: 136 -----------------------------------------SIAIDVASALDYLHHHCQE 154
                                                     I   +  A+ YLH     
Sbjct: 74  YENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN-- 131

Query: 155 LILHCDPKPSNVLLD---NDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYD 211
            I H D KP N+L      +    + DF  A+          +S      T  Y A +  
Sbjct: 132 -IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS-----HNSLTTPCYTPYYVAPEVL 185

Query: 212 LGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARM 255
              +   + D ++ G+++  ++    P    F  +  L     M
Sbjct: 186 GPEKYDKSCDMWSLGVIMYILLCGYPP----FYSNHGLAISPGM 225

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 7e-12
 Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 63/243 (25%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNI--------- 126
           L+  +G G F  V+     +N   VA+K++    +  +++   E K L+ +         
Sbjct: 17  LVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKED 75

Query: 127 --CHRNLVRFI------------------------------------------SIAIDVA 142
                ++++ +                                           I+  + 
Sbjct: 76  SMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLL 135

Query: 143 SALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSNPTQSSSNGVRR 201
             LDY+H  C   I+H D KP NVL++  D   ++   ++A      +           +
Sbjct: 136 LGLDYMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGN--ACWYDEHYTNSIQ 191

Query: 202 TIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRV 261
           T  Y + +  LG+      D ++   L+ E++T        FE D             ++
Sbjct: 192 TREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL----FEPDEGHSYTKDDDHIAQI 247

Query: 262 MDI 264
           +++
Sbjct: 248 IEL 250

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.0 bits (129), Expect = 3e-09
 Identities = 19/152 (12%), Positives = 34/152 (22%), Gaps = 49/152 (32%)

Query: 76  LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSI----------QCQGASKSFMAECKALKN 125
           +  L+G G   AV+            +K   +          +       F         
Sbjct: 4   IGKLMGEGKESAVFNCY-SEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSAR 62

Query: 126 ICHRNLVRF----------------------------------ISIAIDVASALDYLHHH 151
              R L +                                     +   +   +   +H 
Sbjct: 63  NEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR 122

Query: 152 CQELILHCDPKPSNVLLDNDLFAHIGDFELAR 183
               I+H D    NVL+  +    I DF  + 
Sbjct: 123 G---IVHGDLSQYNVLVS-EEGIWIIDFPQSV 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.86
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.45
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	96.72
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	95.98
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	95.89
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.77
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	93.61

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-50  Score=363.45  Aligned_cols=228  Identities=27%  Similarity=0.419  Sum_probs=175.0

Q ss_pred             hhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ...++|++.+.||+|+||.||+|++.   ..||||+++..  .....+.|.+|+.+|++++|||||++            
T Consensus         5 i~~~~~~~~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv   81 (276)
T d1uwha_           5 IPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIV   81 (276)
T ss_dssp             CCTTCCCCCSEEEECSSCEEEEEESS---SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEE
T ss_pred             cccccEEEEEEEeeCCCcEEEEEEEC---CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEE
Confidence            34578999999999999999999864   45999998644  23445789999999999999999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.||+.||+|||+++   ||||||||+|||++.++.+||+|||+|+......
T Consensus        82 ~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~---ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~  158 (276)
T d1uwha_          82 TQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS  158 (276)
T ss_dssp             EECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTSSEEECCCCCSCC-----
T ss_pred             EecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCC---EeccccCHHHEEEcCCCCEEEccccceeeccccC
Confidence                                     568999999999999999   9999999999999999999999999998664332


Q ss_pred             CCCccCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CCchHHHh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PNRVMDIV  265 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~~~~~~~  265 (356)
                      .  ........||+.|+|||++.+   ..++.++|||||||++|||+||+.||....... .+........ +....   
T Consensus       159 ~--~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~-~~~~~~~~~~~~p~~~---  232 (276)
T d1uwha_         159 G--SHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIFMVGRGYLSPDLS---  232 (276)
T ss_dssp             ---------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHHTSCCCCGG---
T ss_pred             C--cccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHH-HHHHHHhcCCCCCcch---
Confidence            2  223345678999999999864   358899999999999999999999997532211 1111111111 11100   


Q ss_pred             hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          266 NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       266 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                                              .....++..+.+|+.+||+.||++||||++|++.|+.+.++++
T Consensus       233 ------------------------~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~~P  275 (276)
T d1uwha_         233 ------------------------KVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLP  275 (276)
T ss_dssp             ------------------------GSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             ------------------------hccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHcCC
Confidence                                    0011345578899999999999999999999999999987764

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-49  Score=355.01  Aligned_cols=217  Identities=21%  Similarity=0.262  Sum_probs=171.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .++|++.+.||+|+||+||+|++..+++.||||+++.... ...+.+.+|+.+|++++|||||++               
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            4689999999999999999999999999999999975432 334568899999999999999997               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+|+.......  
T Consensus        84 y~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~---IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~--  158 (271)
T d1nvra_          84 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR--  158 (271)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECTTCCEEECCCTTCEECEETTE--
T ss_pred             ccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcC---CccCcccHHHEEECCCCCEEEccchhheeeccCCc--
Confidence                                  569999999999999999   99999999999999999999999999987654321  


Q ss_pred             ccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                      .......+||+.|+|||++.+..+ +.++|||||||++|||+||+.||....................            
T Consensus       159 ~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~------------  226 (271)
T d1nvra_         159 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL------------  226 (271)
T ss_dssp             ECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTS------------
T ss_pred             cccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC------------
Confidence            223345789999999999988876 5779999999999999999999975433322222111110000            


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...                  ......+.+|+.+||+.||++|||++|+++
T Consensus       227 ~~~------------------~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         227 NPW------------------KKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             TTG------------------GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             Ccc------------------ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            000                  022235678999999999999999999864

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-49  Score=358.65  Aligned_cols=240  Identities=20%  Similarity=0.254  Sum_probs=185.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++.+.||+|+||+||+|++..+++.||||++...   .....+.+.+|+.+|++++||||+++              
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5799999999999999999999999999999999743   23345678999999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.|++.||+|||+.+   ||||||||+|||+++++.+||+|||+|+.+..... 
T Consensus        88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~-  163 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK-  163 (288)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhcccc---EEcCcCCccccccCCCceEEecccccceecccCCc-
Confidence                                   458899999999999999   99999999999999999999999999987643322 


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       ........||+.|+|||++.+..++.++|||||||++|||++|+.||.....     ...            ....+..
T Consensus       164 -~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----~~~------------~~~i~~~  225 (288)
T d1uu3a_         164 -QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-----YLI------------FQKIIKL  225 (288)
T ss_dssp             -------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH------------HHHHHTT
T ss_pred             -ccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH-----HHH------------HHHHHcC
Confidence             1223346799999999999999999999999999999999999999974211     111            1111111


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccccCCcCCccccc
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLTNNRAPKLK  349 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~~~~~~~~~~~~  349 (356)
                      ....                +......+.+|+.+||+.||.+|||++|++..-.=..+.......++.+.++.+|.++
T Consensus       226 ~~~~----------------p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w~~l~~~~pP~l~  287 (288)
T d1uu3a_         226 EYDF----------------PEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQTPPKLT  287 (288)
T ss_dssp             CCCC----------------CTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTGGGSCCCCCC
T ss_pred             CCCC----------------CccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCHHHhhcCCCCCCC
Confidence            1100                0022335689999999999999999999876533223334444567788888777664

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-48  Score=355.57  Aligned_cols=214  Identities=19%  Similarity=0.225  Sum_probs=174.5

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      ++|++.+.||+|+||+||+|++..+|+.||||+++.......+.+.+|+.+|++++|||||++                 
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            469999999999999999999999999999999987666666789999999999999999987                 


Q ss_pred             -------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccC
Q 039228          135 -------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSS  195 (356)
Q Consensus       135 -------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  195 (356)
                                         ..++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+|+.+....    ..
T Consensus       100 ~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~----~~  172 (293)
T d1yhwa1         100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ----SK  172 (293)
T ss_dssp             TTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSTT----CC
T ss_pred             CCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCC---CcccCCcHHHeEECCCCcEeeccchhheeecccc----cc
Confidence                               568999999999999999   9999999999999999999999999998764322    22


Q ss_pred             CCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccccc
Q 039228          196 SNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKV  275 (356)
Q Consensus       196 ~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  275 (356)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|+.||....... .+........+.         +      
T Consensus       173 ~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~~~~~~~~~~~---------~------  236 (293)
T d1yhwa1         173 RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATNGTPE---------L------  236 (293)
T ss_dssp             BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHHCSCC---------C------
T ss_pred             ccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHH-HHHHHHhCCCCC---------C------
Confidence            344679999999999999999999999999999999999999996422111 011111110000         0      


Q ss_pred             ccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          276 LAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                    .........+.+|+.+||+.||++|||+.|+++
T Consensus       237 --------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         237 --------------QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             --------------SSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             --------------CCcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                          000123345789999999999999999999864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-50  Score=361.95  Aligned_cols=226  Identities=21%  Similarity=0.334  Sum_probs=180.9

Q ss_pred             HHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           67 LLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        67 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      |+...++|++.+.||+|+||+||+|++..+++.||||+++... ...+++.+|+.+|++++|||||++            
T Consensus        12 wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~i   90 (287)
T d1opja_          12 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI   90 (287)
T ss_dssp             TBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             cEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEE
Confidence            3344567999999999999999999999999999999987543 345789999999999999999987            


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++....
T Consensus        91 v~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (287)
T d1opja_          91 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG  167 (287)
T ss_dssp             EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCCTTTCCS
T ss_pred             EeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCC---cccCccccCeEEECCCCcEEEccccceeecCC
Confidence                                       558899999999999999   99999999999999999999999999987644


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ..   ........|++.|+|||++.+..++.++|||||||++|||++|..||....    .....         .+.+..
T Consensus       168 ~~---~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~----~~~~~---------~~~i~~  231 (287)
T d1opja_         168 DT---YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI----DLSQV---------YELLEK  231 (287)
T ss_dssp             SS---SEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTC----CHHHH---------HHHHHT
T ss_pred             CC---ceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcc----hHHHH---------HHHHhc
Confidence            32   222334568899999999999999999999999999999999777654211    11111         111211


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .......                  ..++..+.+|+.+||+.||++||||++|++.|+.+.+.
T Consensus       232 ~~~~~~~------------------~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         232 DYRMERP------------------EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             TCCCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             CCCCCCC------------------ccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            1111111                  13445688999999999999999999999999887654

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-48  Score=353.58  Aligned_cols=233  Identities=20%  Similarity=0.360  Sum_probs=171.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC----eEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR----AVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~----~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      .+.|++.++||+|+||.||+|.+..++    ..||||+++.... .....|.+|+.++++++|||||++           
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence            356889999999999999999987554    5799999975433 334578999999999999999987           


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 +.++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++....
T Consensus        86 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~---iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~  162 (283)
T d1mqba_          86 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLED  162 (283)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred             EEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccc---cccCccccceEEECCCCeEEEcccchhhcccC
Confidence                                       568999999999999999   99999999999999999999999999987654


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      .... ........||+.|+|||++.+..++.++|||||||++|||++|..|+....    ...+..         ..+..
T Consensus       163 ~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~----~~~~~~---------~~i~~  228 (283)
T d1mqba_         163 DPEA-TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL----SNHEVM---------KAIND  228 (283)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC----CHHHHH---------HHHHT
T ss_pred             CCcc-ceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC----CHHHHH---------HHHhc
Confidence            3221 222334568999999999999999999999999999999999766654221    111111         11111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccccccccCC
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPETVFKSLT  341 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~~~~~~~~  341 (356)
                      ......                  +..++..+.+|+.+||+.||++||||.+|++.|+.+.+.   ++++++++
T Consensus       229 ~~~~~~------------------~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~---p~~l~~l~  281 (283)
T d1mqba_         229 GFRLPT------------------PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA---PDSLKTLA  281 (283)
T ss_dssp             TCCCCC------------------CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS---GGGGGSBC
T ss_pred             cCCCCC------------------chhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC---cccccccc
Confidence            111111                  113445688999999999999999999999999887653   44455443

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-49  Score=350.93  Aligned_cols=220  Identities=20%  Similarity=0.361  Sum_probs=166.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|++.. ++.||||+++... ...+.+.+|+.++++++|||||++                
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~-~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~   81 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   81 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETT-TEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECC-CCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEe
Confidence            3579999999999999999999874 5789999997543 345789999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.......  
T Consensus        82 ~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~--  156 (263)
T d1sm2a_          82 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY--  156 (263)
T ss_dssp             CTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCTTCSGGGEEECGGGCEEECSCC------------
T ss_pred             cCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccc---eeecccchhheeecCCCCeEecccchheeccCCCc--
Confidence                                  568999999999999999   99999999999999999999999999987644322  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcC-CCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg-~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......||+.|+|||++.+..++.++|||||||++|||+|+ .+||....  ...+...+....            ..
T Consensus       157 -~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~--~~~~~~~i~~~~------------~~  221 (263)
T d1sm2a_         157 -TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS--NSEVVEDISTGF------------RL  221 (263)
T ss_dssp             ---------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC--HHHHHHHHHHTC------------CC
T ss_pred             -eeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC--HHHHHHHHHhcC------------CC
Confidence             223346789999999999999999999999999999999995 55554211  111111111110            00


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ..                  +..++..+.+|+.+||+.||++||||++|++.|++|.++
T Consensus       222 ~~------------------p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         222 YK------------------PRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             CC------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC------------------ccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence            00                  013344678999999999999999999999999999764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-48  Score=355.49  Aligned_cols=224  Identities=21%  Similarity=0.359  Sum_probs=164.9

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCe---EEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRA---VVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~---~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||+||+|++..+++   .||||.+.... ....+.|.+|+.+|++++|||||++            
T Consensus        25 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~i  104 (299)
T d1jpaa_          25 ISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMI  104 (299)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             hhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            3568889999999999999999976543   68999886543 3345679999999999999999987            


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+++.+...
T Consensus       105 v~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~  181 (299)
T d1jpaa_         105 ITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  181 (299)
T ss_dssp             EEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred             EEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCC---CccCccccceEEECCCCcEEECCcccceEccCC
Confidence                                      568999999999999999   999999999999999999999999999876543


Q ss_pred             CCC-CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          189 SNP-TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       189 ~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      ... .........||+.|+|||++.+..++.++|||||||++|||+| |+.||......  .+...+.            
T Consensus       182 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~--~~~~~i~------------  247 (299)
T d1jpaa_         182 TSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ--DVINAIE------------  247 (299)
T ss_dssp             --------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHH------------
T ss_pred             CCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH--HHHHHHH------------
Confidence            321 1222334567899999999999999999999999999999998 89999743211  1111111            


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      .......                  +..++..+.+|+.+||+.||++||||.+|++.|+++.+
T Consensus       248 ~~~~~~~------------------~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         248 QDYRLPP------------------PMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             TTCCCCC------------------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             cCCCCCC------------------CccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            1110000                  11345578899999999999999999999999988754

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-48  Score=350.61  Aligned_cols=222  Identities=22%  Similarity=0.344  Sum_probs=175.8

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|+++ +++.||||+++... ...+.+.+|+.+|++++|||||++               
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey   88 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEY   88 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEe
Confidence            3467999999999999999999986 45889999997543 345789999999999999999987               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             +.++.||+.||.|||+++   |+||||||+|||+++++.+||+|||+|+......  
T Consensus        89 ~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~---ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~--  163 (272)
T d1qpca_          89 MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDTLSCKIADFGLARLIEDNE--  163 (272)
T ss_dssp             CTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTSCEEECCCTTCEECSSSC--
T ss_pred             CCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cccCccchhheeeecccceeeccccceEEccCCc--
Confidence                                   568999999999999999   9999999999999999999999999998765322  


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       ........||+.|+|||++.++.++.++|||||||++|||+||..|+..... .......+..            ....
T Consensus       164 -~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~-~~~~~~~i~~------------~~~~  229 (272)
T d1qpca_         164 -YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT-NPEVIQNLER------------GYRM  229 (272)
T ss_dssp             -EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHHT------------TCCC
T ss_pred             -cccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC-HHHHHHHHHh------------cCCC
Confidence             2233456789999999999988999999999999999999996555432111 1111111111            1000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      ..                  +..++..+.+|+.+||+.||++||||++|++.|+.+-.+
T Consensus       230 ~~------------------p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~fts  270 (272)
T d1qpca_         230 VR------------------PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (272)
T ss_dssp             CC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC------------------cccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhhc
Confidence            00                  013444678999999999999999999999999887543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-48  Score=348.54  Aligned_cols=210  Identities=19%  Similarity=0.238  Sum_probs=171.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|+++.+++.||+|++...   .....+.+.+|+.+++.++|||||++             
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            35799999999999999999999999999999998643   23345678899999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||+|||+++   ||||||||+|||++.++.+||+|||+|+.....  
T Consensus        85 mEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~--  159 (263)
T d2j4za1          85 LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPSS--  159 (263)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEECCCCSCSCCCCC--
T ss_pred             EeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---eeeeeeccccceecCCCCEeecccceeeecCCC--
Confidence                                    568999999999999999   999999999999999999999999999765432  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||++.+..++.++|||||||++|||++|+.||....     .......            ...
T Consensus       160 ----~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~-----~~~~~~~------------i~~  218 (263)
T d2j4za1         160 ----RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT-----YQETYKR------------ISR  218 (263)
T ss_dssp             ----CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS-----HHHHHHH------------HHT
T ss_pred             ----cccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCC-----HHHHHHH------------HHc
Confidence                2234679999999999999999999999999999999999999996421     1111111            111


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .....                +...+..+.+|+.+||+.||++|||++|+++
T Consensus       219 ~~~~~----------------p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         219 VEFTF----------------PDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             TCCCC----------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCCC----------------CccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence            11000                0022345789999999999999999999986

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=350.08  Aligned_cols=216  Identities=20%  Similarity=0.260  Sum_probs=162.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++.+.||+|+||.||+|+++.+|+.||||++....  ....+.+.+|+.+|++++|||||++              
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            367999999999999999999999999999999997543  2334678899999999999999987              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCC--CcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQ--ELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~--~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                   +.++.||+.||.|||+.+.  .+||||||||+|||++.++.+||+|||+++
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~  162 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  162 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHH
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeecccee
Confidence                                         4588999999999998652  349999999999999999999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ......    .......||+.|+|||++.+..++.++|||||||++|||+||+.||......  .+...           
T Consensus       163 ~~~~~~----~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~--~~~~~-----------  225 (269)
T d2java1         163 ILNHDT----SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGK-----------  225 (269)
T ss_dssp             HC---------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHH-----------
T ss_pred             ecccCC----CccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHH--HHHHH-----------
Confidence            764322    2234577899999999999999999999999999999999999999743211  11111           


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +....... .                  +...+..+.+|+.+||+.||.+|||+.||++
T Consensus       226 i~~~~~~~-~------------------~~~~s~~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         226 IREGKFRR-I------------------PYRYSDELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHHTCCCC-C------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHcCCCCC-C------------------CcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            11111100 0                  0123346789999999999999999999975

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-48  Score=355.66  Aligned_cols=222  Identities=22%  Similarity=0.355  Sum_probs=172.6

Q ss_pred             CCCCccccceecCceEEEEEEECCCCe----EEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRA----VVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      ++|++++.||+|+||+||+|.+..+++    .||+|.++.. .....+.+.+|+.++++++|||||++            
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v   88 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   88 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEE
Confidence            469999999999999999999987765    5888888643 33456789999999999999999997            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+++......
T Consensus        89 ~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~---iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~  165 (317)
T d1xkka_          89 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  165 (317)
T ss_dssp             EECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTC
T ss_pred             EEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcC---cccCcchhhcceeCCCCCeEeeccccceeccccc
Confidence                                     568999999999999999   9999999999999999999999999998765433


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .  ........||+.|+|||++.++.++.++|||||||++|||+| |.+||......  .+...+...            
T Consensus       166 ~--~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~--~~~~~i~~~------------  229 (317)
T d1xkka_         166 K--EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKG------------  229 (317)
T ss_dssp             C----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGG--GHHHHHHHT------------
T ss_pred             c--cccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcC------------
Confidence            2  222334568999999999999999999999999999999999 88998753221  122222111            


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .....                  +..++..+.+|+.+||+.||.+|||+.+|++.|..+...
T Consensus       230 ~~~~~------------------p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         230 ERLPQ------------------PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             CCCCC------------------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             CCCCC------------------CcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence            11000                  113445678999999999999999999999999888643

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-48  Score=351.68  Aligned_cols=214  Identities=21%  Similarity=0.279  Sum_probs=172.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH-----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF-----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l-----------------  134 (356)
                      +.|++++.||+|+||.||+|++..+++.||||+++.......+.+.+|+.+|++++|||||++                 
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            468999999999999999999999999999999987766777889999999999999999997                 


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+|+......    
T Consensus        92 ~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~---ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~----  164 (288)
T d2jfla1          92 AGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNK---IIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI----  164 (288)
T ss_dssp             TTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECHHHH----
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEEeecChhheeECCCCCEEEEechhhhccCCCc----
Confidence                                 458899999999999999   9999999999999999999999999997653221    


Q ss_pred             cCCCCccccccccchhhhc-----CCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          194 SSSNGVRRTIGYTALDYDL-----GSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~-----~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .......||+.|+|||++.     +..|+.++|||||||++|||+||+.||....... .+........+ .        
T Consensus       165 ~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~-~~~~i~~~~~~-~--------  234 (288)
T d2jfla1         165 QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR-VLLKIAKSEPP-T--------  234 (288)
T ss_dssp             HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG-HHHHHHHSCCC-C--------
T ss_pred             ccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH-HHHHHHcCCCC-C--------
Confidence            1223467899999999984     4568899999999999999999999997532211 11111110000 0        


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      +                    ..+...+..+.+|+.+||+.||++|||+.|+++
T Consensus       235 ~--------------------~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         235 L--------------------AQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             C--------------------SSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             C--------------------CccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0                    001133446789999999999999999999875

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-47  Score=341.66  Aligned_cols=217  Identities=21%  Similarity=0.354  Sum_probs=176.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||+||+|+++ +++.||||+++.... ..+.+.+|+.++++++||||+++                
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey   80 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY   80 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEEC
T ss_pred             hHHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEc
Confidence            468999999999999999999986 568999999986543 45789999999999999999997                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.|++.||.|||+.+   |+||||||+||+++.++.+||+|||+++.......  
T Consensus        81 ~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~---iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~--  155 (258)
T d1k2pa_          81 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY--  155 (258)
T ss_dssp             CTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTT---BCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC--
T ss_pred             cCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcC---cccccccceeEEEcCCCcEEECcchhheeccCCCc--
Confidence                                  568999999999999999   99999999999999999999999999986654322  


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......+|+.|+|||.+.+..++.++|||||||++|||+| |+.||......  .+...+...            ...
T Consensus       156 -~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~--~~~~~i~~~------------~~~  220 (258)
T d1k2pa_         156 -TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEHIAQG------------LRL  220 (258)
T ss_dssp             -CCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHHHTT------------CCC
T ss_pred             -eeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHH--HHHHHHHhC------------CCC
Confidence             23334678999999999999999999999999999999998 89999754321  111111110            000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      ..                  +..++..+.+|+.+||+.||++|||+++|++.|..|
T Consensus       221 ~~------------------p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         221 YR------------------PHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             CC------------------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             CC------------------cccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            00                  013334678999999999999999999999998653

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-47  Score=345.35  Aligned_cols=226  Identities=22%  Similarity=0.338  Sum_probs=178.9

Q ss_pred             CCCCcccc-ceecCceEEEEEEECC--CCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           72 DGFPLINL-IGVGSFDAVYQGVFDL--NRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~-lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      ++|.+.+. ||+|+||.||+|.+..  ++..||||+++... ....+.|.+|+.+|++++|||||++             
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvm   87 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM   87 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEE
Confidence            45777774 9999999999998754  35689999997543 3345789999999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              +.++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++.+.....
T Consensus        88 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~---iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  164 (285)
T d1u59a_          88 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  164 (285)
T ss_dssp             ECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             EeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCC---eecCcCchhheeeccCCceeeccchhhhccccccc
Confidence                                    568999999999999999   99999999999999999999999999987654332


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                      . ........||+.|+|||++.+..++.++|||||||++|||+| |+.||.....  ..+...+....            
T Consensus       165 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~--~~~~~~i~~~~------------  229 (285)
T d1u59a_         165 Y-YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFIEQGK------------  229 (285)
T ss_dssp             E-ECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHHHTTC------------
T ss_pred             c-cccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCC------------
Confidence            1 223344568999999999998999999999999999999998 9999975321  11111111110            


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhcc
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLP  333 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~  333 (356)
                      ...                  .+..++..+.+|+.+||+.||++||||.+|++.|+.+..++..
T Consensus       230 ~~~------------------~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~~~  275 (285)
T d1u59a_         230 RME------------------CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS  275 (285)
T ss_dssp             CCC------------------CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred             CCC------------------CCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhhh
Confidence            000                  0113445678999999999999999999999999988766543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=353.60  Aligned_cols=164  Identities=26%  Similarity=0.365  Sum_probs=144.5

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ..++|++++.||+|+||+||+|++..+++.||+|+++... ......+.+|+.+|++++|||||++              
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            3568999999999999999999999999999999997553 3335678999999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.|++.||.|||+ ++   |+||||||+|||++.+|.+||+|||+|+.....  
T Consensus        84 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~---IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~--  158 (322)
T d1s9ja_          84 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHK---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--  158 (322)
T ss_dssp             ECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHC---CCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred             EcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCC---EEccccCHHHeeECCCCCEEEeeCCCccccCCC--
Confidence                                   4588999999999997 48   999999999999999999999999999865432  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCcc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFM  242 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~  242 (356)
                          .....+||+.|+|||++.+..|+.++||||+||++|||++|+.||...
T Consensus       159 ----~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~  206 (322)
T d1s9ja_         159 ----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  206 (322)
T ss_dssp             ----TC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             ----ccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence                223468999999999999999999999999999999999999999753

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-47  Score=342.22  Aligned_cols=210  Identities=24%  Similarity=0.301  Sum_probs=163.9

Q ss_pred             CccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           75 PLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        75 ~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      ++.+.||+|+||+||+|++..+++.||+|.+....  ....+.+.+|+++|++++|||||++                  
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            66778999999999999999999999999987542  3344678999999999999999987                  


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC-CCCceEEcccccccccccCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD-NDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                             ..++.||+.||+|||+++ .+|+||||||+|||++ .++.+||+|||+++....   
T Consensus        92 E~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~-~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~---  167 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA---  167 (270)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT---
T ss_pred             eCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCC-CCEEeCCcChhhceeeCCCCCEEEeecCcceeccC---
Confidence                                   458899999999999874 4599999999999996 578999999999975432   


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .......||+.|+|||++.+ .++.++|||||||++|||++|+.||....    ...........+...    ..+.
T Consensus       168 ---~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~----~~~~~~~~i~~~~~~----~~~~  235 (270)
T d1t4ha_         168 ---SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ----NAAQIYRRVTSGVKP----ASFD  235 (270)
T ss_dssp             ---TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS----SHHHHHHHHTTTCCC----GGGG
T ss_pred             ---CccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcc----cHHHHHHHHHcCCCC----cccC
Confidence               12234679999999999875 59999999999999999999999996432    111111111100000    0000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                                            ......+.+|+.+||+.||++|||++|+++
T Consensus       236 ----------------------~~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         236 ----------------------KVAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             ----------------------GCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ----------------------ccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence                                  012235689999999999999999999975

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.2e-47  Score=347.55  Aligned_cols=208  Identities=26%  Similarity=0.335  Sum_probs=167.2

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .|+.++.||+|+||.||+|++..+++.||||+++....   ...+.+.+|+.+|++++|||||++               
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            38999999999999999999999999999999975532   234568899999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+|+....     
T Consensus        96 ~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~-----  167 (309)
T d1u5ra_          96 YCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHN---MIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-----  167 (309)
T ss_dssp             CCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-----
T ss_pred             ecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC---EeccCCCcceEEECCCCCEEEeecccccccCC-----
Confidence                                  568999999999999999   99999999999999999999999999975432     


Q ss_pred             ccCCCCccccccccchhhhcC---CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDLG---SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                         .....||+.|+|||++.+   ..|+.++|||||||++|||++|..||....... .+........+         .+
T Consensus       168 ---~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~-~~~~i~~~~~~---------~~  234 (309)
T d1u5ra_         168 ---ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNESP---------AL  234 (309)
T ss_dssp             ---BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCC---------CC
T ss_pred             ---CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCCC---------CC
Confidence               223678999999999864   458999999999999999999999996422110 01111110000         00


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..                     ...+..+.+|+.+||+.||++|||++++++
T Consensus       235 ~~---------------------~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         235 QS---------------------GHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             SC---------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CC---------------------CCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            00                     022346789999999999999999999976

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-47  Score=348.21  Aligned_cols=227  Identities=21%  Similarity=0.300  Sum_probs=177.3

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCcc-chHHHHHHHHHHhhcCCCChHHH-----
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQG-ASKSFMAECKALKNICHRNLVRF-----  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l-----  134 (356)
                      +++...++|++.+.||+|+||.||+|+++.     +++.||||+++..... ..+++.+|+.+|++++||||+++     
T Consensus         7 ~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~   86 (301)
T d1lufa_           7 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA   86 (301)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             hccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeec
Confidence            344556789999999999999999999753     4689999999754333 35679999999999999999986     


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEe
Q 039228          135 --------------------------------------------------------ISIAIDVASALDYLHHHCQELILH  158 (356)
Q Consensus       135 --------------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH  158 (356)
                                                                              +.++.|++.||+|||+.+   |||
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~---ivH  163 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERK---FVH  163 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCC---eEe
Confidence                                                                    447889999999999999   999


Q ss_pred             cCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCC-C
Q 039228          159 CDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRR-K  237 (356)
Q Consensus       159 ~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~-~  237 (356)
                      |||||+|||++.++.+||+|||+++.......  ........+++.|+|||.+.+..++.++|||||||++|||++|. +
T Consensus       164 rDlKp~NILld~~~~~Kl~DFGls~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~  241 (301)
T d1lufa_         164 RDLATRNCLVGENMVVKIADFGLSRNIYSADY--YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ  241 (301)
T ss_dssp             SCCSGGGEEECGGGCEEECCCSCHHHHTGGGC--BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             eEEcccceEECCCCcEEEccchhheeccCCcc--ccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCC
Confidence            99999999999999999999999986644322  22334466889999999999999999999999999999999985 5


Q ss_pred             CCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCCh
Q 039228          238 PIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNV  317 (356)
Q Consensus       238 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~  317 (356)
                      ||......  .+...+.           +.... .                  .+..++..+.+|+.+||+.||++||||
T Consensus       242 p~~~~~~~--e~~~~v~-----------~~~~~-~------------------~p~~~~~~~~~li~~cl~~~P~~RPt~  289 (301)
T d1lufa_         242 PYYGMAHE--EVIYYVR-----------DGNIL-A------------------CPENCPLELYNLMRLCWSKLPADRPSF  289 (301)
T ss_dssp             TTTTSCHH--HHHHHHH-----------TTCCC-C------------------CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCCCCCHH--HHHHHHH-----------cCCCC-C------------------CCccchHHHHHHHHHHcCCChhHCcCH
Confidence            66532111  1111111           10000 0                  011344567899999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 039228          318 PNAVHDLQSVNN  329 (356)
Q Consensus       318 ~~vl~~L~~i~~  329 (356)
                      .+|+++|++|.+
T Consensus       290 ~ev~~~L~~i~~  301 (301)
T d1lufa_         290 CSIHRILQRMCE  301 (301)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998853

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-47  Score=349.97  Aligned_cols=219  Identities=23%  Similarity=0.307  Sum_probs=172.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCC-----eEEEEEEeecc-CccchHHHHHHHHHHhhc-CCCChHHH---------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNR-----AVVAIKVLSIQ-CQGASKSFMAECKALKNI-CHRNLVRF---------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~-----~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l---------  134 (356)
                      .++|++.+.||+|+||+||+|++..++     ..||+|.+... .......+.+|+.+|.++ +|||||++         
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~  115 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  115 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence            467999999999999999999986543     37999998643 333456789999999998 89999987         


Q ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCC
Q 039228          135 ---------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKP  163 (356)
Q Consensus       135 ---------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp  163 (356)
                                                                         +.++.||+.||.|||+++   ||||||||
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~---IiHRDlKp  192 (325)
T d1rjba_         116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAA  192 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTT---EEETTCSG
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCch
Confidence                                                               237889999999999999   99999999


Q ss_pred             CCeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCcc
Q 039228          164 SNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFM  242 (356)
Q Consensus       164 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~  242 (356)
                      +|||++.++.+||+|||+|+.......  ........||+.|+|||++.+..++.++|||||||++|||+| |..||...
T Consensus       193 ~Nill~~~~~~Kl~DFGla~~~~~~~~--~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~  270 (325)
T d1rjba_         193 RNVLVTHGKVVKICDFGLARDIMSDSN--YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  270 (325)
T ss_dssp             GGEEEETTTEEEECCCGGGSCGGGCTT--SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             hccccccCCeEEEeeccccccccCCCc--eeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC
Confidence            999999999999999999987654332  222345678999999999999999999999999999999998 89999753


Q ss_pred             ccCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          243 FEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ... ..+........            ..+.                  +..++..+.+|+.+||+.||++||||+||++
T Consensus       271 ~~~-~~~~~~~~~~~------------~~~~------------------p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~  319 (325)
T d1rjba_         271 PVD-ANFYKLIQNGF------------KMDQ------------------PFYATEEIYIIMQSCWAFDSRKRPSFPNLTS  319 (325)
T ss_dssp             CCS-HHHHHHHHTTC------------CCCC------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CHH-HHHHHHHhcCC------------CCCC------------------CCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            322 12222221111            1111                  1134456889999999999999999999999


Q ss_pred             HHH
Q 039228          323 DLQ  325 (356)
Q Consensus       323 ~L~  325 (356)
                      .|.
T Consensus       320 ~L~  322 (325)
T d1rjba_         320 FLG  322 (325)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            985

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-47  Score=340.21  Aligned_cols=217  Identities=20%  Similarity=0.282  Sum_probs=168.7

Q ss_pred             ccceecCceEEEEEEECC--CCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH-------------------
Q 039228           78 NLIGVGSFDAVYQGVFDL--NRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF-------------------  134 (356)
Q Consensus        78 ~~lg~G~~g~Vy~~~~~~--~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l-------------------  134 (356)
                      +.||+|+||.||+|.+..  +++.||||+++...  ....+.+.+|+.+|++++|||||++                   
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g   92 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG   92 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence            469999999999998753  45789999996432  3335679999999999999999987                   


Q ss_pred             -----------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCccCCC
Q 039228          135 -----------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQSSSN  197 (356)
Q Consensus       135 -----------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  197 (356)
                                       +.++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+++.+...... .....
T Consensus        93 ~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~---iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~  168 (277)
T d1xbba_          93 PLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY-YKAQT  168 (277)
T ss_dssp             EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSE-EEC--
T ss_pred             cHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCC---cccCCCcchhhcccccCcccccchhhhhhccccccc-ccccc
Confidence                             568999999999999999   999999999999999999999999999876443321 22334


Q ss_pred             CccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccccccc
Q 039228          198 GVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVL  276 (356)
Q Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  276 (356)
                      ...||+.|+|||.+.+..++.++|||||||++|||+| |+.||......  .+...+.            .......   
T Consensus       169 ~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~--~~~~~i~------------~~~~~~~---  231 (277)
T d1xbba_         169 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLE------------KGERMGC---  231 (277)
T ss_dssp             --CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHH------------TTCCCCC---
T ss_pred             ccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH--HHHHHHH------------cCCCCCC---
Confidence            4678999999999999999999999999999999998 89999743211  1111111            1100000   


Q ss_pred             cccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          277 AGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                                     +..++..+.+|+.+||+.||++|||+++|++.|+.....
T Consensus       232 ---------------p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  270 (277)
T d1xbba_         232 ---------------PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  270 (277)
T ss_dssp             ---------------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             ---------------CcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhh
Confidence                           113445688999999999999999999999999876543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=2.6e-46  Score=347.94  Aligned_cols=216  Identities=17%  Similarity=0.194  Sum_probs=173.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+|+.||||++........+.+.+|+.+|++++|||||++                
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            4579999999999999999999999999999999987666666789999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC--CCCceEEcccccccccccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD--NDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~--~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                            ..++.||+.||.|||+++   ||||||||+|||++  .++.+||+|||+++.+.... 
T Consensus       105 ~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~-  180 (350)
T d1koaa2         105 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-  180 (350)
T ss_dssp             CCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS-
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcC---CeeeeechhHeeeccCCCCeEEEeecchheeccccc-
Confidence                                  568999999999999999   99999999999995  46889999999998764322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||++.+..++.++|||||||++|+|++|+.||...... ..+.........          +.
T Consensus       181 ----~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~-~~~~~i~~~~~~----------~~  245 (350)
T d1koaa2         181 ----SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD-ETLRNVKSCDWN----------MD  245 (350)
T ss_dssp             ----CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHTCCC----------SC
T ss_pred             ----ccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHH-HHHHHHHhCCCC----------CC
Confidence                223467899999999999999999999999999999999999999643111 001111110000          00


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..                  ........+.+|+.+||+.||++|||++|+++.
T Consensus       246 ~~------------------~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         246 DS------------------AFSGISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             CG------------------GGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             cc------------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            00                  001223457899999999999999999999873

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-47  Score=340.98  Aligned_cols=222  Identities=19%  Similarity=0.280  Sum_probs=167.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCC---CeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+   +..||||.++... ....+.+.+|+.+|++++||||+++            
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv   85 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII   85 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEE
Confidence            45799999999999999999998654   3578999886443 3334679999999999999999987            


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.||+.||.|||+++   ||||||||+||+++.++.+||+|||+++.+....
T Consensus        86 ~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~  162 (273)
T d1mp8a_          86 MELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST  162 (273)
T ss_dssp             EECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEEEETTEEEECC-----------
T ss_pred             EEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccC---eeccccchhheeecCCCcEEEccchhheeccCCc
Confidence                                     568899999999999999   9999999999999999999999999998764322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                         ........||+.|+|||++.+..++.++|||||||++|||+| |.+||......  .+...+.....          
T Consensus       163 ---~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~--~~~~~i~~~~~----------  227 (273)
T d1mp8a_         163 ---YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGER----------  227 (273)
T ss_dssp             -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCC----------
T ss_pred             ---ceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHH--HHHHHHHcCCC----------
Confidence               122334567899999999999999999999999999999998 89998754322  11111111100          


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                        ..                  .+..++..+.+|+.+||+.||++|||+.+|++.|+++.+.
T Consensus       228 --~~------------------~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         228 --LP------------------MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             --CC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             --CC------------------CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence              00                  0113445688999999999999999999999999988654

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-46  Score=340.40  Aligned_cols=223  Identities=22%  Similarity=0.332  Sum_probs=171.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+ +.||||+++... ...+.|.+|+.++++++|||||++                
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~-~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~   93 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYM   93 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCC-CEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEec
Confidence            46799999999999999999999866 679999997543 345789999999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            +.++.||+.||+|||+.+   |+||||||+||||+.++.+||+|||+++......   
T Consensus        94 ~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~---ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~---  167 (285)
T d1fmka3          94 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLIEDNE---  167 (285)
T ss_dssp             TTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEECCCCTTC---------
T ss_pred             CCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhh---eecccccceEEEECCCCcEEEcccchhhhccCCC---
Confidence                                  568999999999999999   9999999999999999999999999998654322   


Q ss_pred             ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      ........||+.|+|||++.++.++.++|||||||++|||++|..|+..... ...+...+.            ......
T Consensus       168 ~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~-~~~~~~~i~------------~~~~~~  234 (285)
T d1fmka3         168 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-NREVLDQVE------------RGYRMP  234 (285)
T ss_dssp             --------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-HHHHHHHHH------------TTCCCC
T ss_pred             ceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCC-HHHHHHHHH------------hcCCCC
Confidence            1223346689999999999999999999999999999999997666542211 111111111            111101


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      .                  ...++..+.+++.+||+.||++||||++|+++|+.+.....
T Consensus       235 ~------------------~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         235 C------------------PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             C------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             C------------------CcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCC
Confidence            0                  11344568899999999999999999999999988765543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.2e-46  Score=334.75  Aligned_cols=226  Identities=22%  Similarity=0.268  Sum_probs=171.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc---cchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ---GASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||+++....   .....+.+|+.+++.++||||+++             
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            4679999999999999999999999999999999975432   334578999999999999999986             


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQ  186 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  186 (356)
                                                  ..++.||+.||.|||+++   ||||||||+|||++.++..+|+|||.+....
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~---iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~  162 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVKVMDFGIARAIA  162 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTSCEEECCCTTCEECC
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCC---ccCccccCcccccCccccceeehhhhhhhhc
Confidence                                        568999999999999999   9999999999999999999999999987654


Q ss_pred             cCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          187 EVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       187 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      .... .........||+.|+|||++.+..++.++|||||||++|||+||+.||......     ....            
T Consensus       163 ~~~~-~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~-----~~~~------------  224 (277)
T d1o6ya_         163 DSGN-SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV-----SVAY------------  224 (277)
T ss_dssp             -----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-----HHHH------------
T ss_pred             cccc-cccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHH-----HHHH------------
Confidence            3322 123344578999999999999999999999999999999999999999742211     1110            


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-ChHHHHHHHHHhhh
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-NVPNAVHDLQSVNN  329 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-s~~~vl~~L~~i~~  329 (356)
                      ..+......     ..       ......+..+.+++.+||+.||.+|| |++++++.|.++.+
T Consensus       225 ~~~~~~~~~-----~~-------~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~n  276 (277)
T d1o6ya_         225 QHVREDPIP-----PS-------ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN  276 (277)
T ss_dssp             HHHHCCCCC-----GG-------GTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHC
T ss_pred             HHHhcCCCC-----Cc-------hhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHhC
Confidence            001000000     00       00012334678999999999999999 89999999988764

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-46  Score=343.08  Aligned_cols=215  Identities=22%  Similarity=0.254  Sum_probs=155.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      .+.|++.+.||+|+||+||+|++..+++.||||++..... ...+.+.+|+.+|++++|||||++               
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            3569999999999999999999999999999999975432 234567899999999999999997               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC---CCCceEEcccccccccccCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD---NDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~---~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                            ..++.||+.||.|||+++   |+||||||+|||+.   .++.+||+|||+++......
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~---iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~  164 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS  164 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhce---eeeEEecccceeecccCCCceEEEeccceeEEccCCC
Confidence                                  458999999999999999   99999999999994   57899999999998654322


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVL  269 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (356)
                           ......||+.|+|||++.+..++.++|||||||++|||++|+.||......  .....               .+
T Consensus       165 -----~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~--~~~~~---------------i~  222 (307)
T d1a06a_         165 -----VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDA--KLFEQ---------------IL  222 (307)
T ss_dssp             -------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHH---------------HH
T ss_pred             -----eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHH--HHHHH---------------Hh
Confidence                 223467999999999999999999999999999999999999999742211  11111               11


Q ss_pred             ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .......            .......+..+.+|+.+||+.||++|||++|+++
T Consensus       223 ~~~~~~~------------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         223 KAEYEFD------------SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             TTCCCCC------------TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ccCCCCC------------CccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            1000000            0000123345789999999999999999999987

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=5.1e-46  Score=346.13  Aligned_cols=215  Identities=19%  Similarity=0.212  Sum_probs=173.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++++.||+|+||.||+|++..+++.||||+++.......+.+.+|+.+|++++|||||++                
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  107 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  107 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            3569999999999999999999999999999999987665556778899999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC--CCCceEEcccccccccccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD--NDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~--~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                            ..++.||+.||.|||+++   ||||||||+|||++  .++.+||+|||+|+...... 
T Consensus       108 ~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~---iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~-  183 (352)
T d1koba_         108 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE-  183 (352)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-
T ss_pred             CCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCC---eeecccccccccccccCCCeEEEeecccceecCCCC-
Confidence                                  568999999999999999   99999999999998  67899999999998765322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......||+.|+|||++.+..++.++|||||||++|+|+||..||....... .+.........          ..
T Consensus       184 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~~~----------~~  248 (352)
T d1koba_         184 ----IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE-TLQNVKRCDWE----------FD  248 (352)
T ss_dssp             ----CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHHCCCC----------CC
T ss_pred             ----ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCC----------CC
Confidence                2233668999999999999999999999999999999999999996422110 01111110000          00


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..                  .....+..+.+|+.+||+.||.+|||+.|+++
T Consensus       249 ~~------------------~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         249 ED------------------AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             SS------------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             cc------------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            00                  00123345789999999999999999999986

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=338.45  Aligned_cols=224  Identities=21%  Similarity=0.318  Sum_probs=176.2

Q ss_pred             cccceecCceEEEEEEECCCC---eEEEEEEeecc-CccchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           77 INLIGVGSFDAVYQGVFDLNR---AVVAIKVLSIQ-CQGASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~---~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      .++||+|+||+||+|++..++   ..||||.++.. .....++|.+|+++|++++||||+++                  
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            468999999999999986543   46999999743 34455789999999999999999987                  


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           +.++.|++.||.|||+.+   |+||||||+|||+++++.+||+|||+++..........
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~---iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~  188 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKK---FVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  188 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCT
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccC---cccCCccHHhEeECCCCCEEEecccchhhccccccccc
Confidence                                 568999999999999999   99999999999999999999999999987755444334


Q ss_pred             cCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLNDN  273 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  273 (356)
                      .......||..|+|||.+....++.++||||||+++|||+||..||....... .+.........            .. 
T Consensus       189 ~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~-~~~~~i~~g~~------------~~-  254 (311)
T d1r0pa_         189 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-DITVYLLQGRR------------LL-  254 (311)
T ss_dssp             TCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CHHHHHTTCC------------CC-
T ss_pred             eecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHH-HHHHHHHcCCC------------CC-
Confidence            44455678999999999999999999999999999999999888875432211 11111111100            00 


Q ss_pred             ccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhccc
Q 039228          274 KVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILLPE  334 (356)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~~~  334 (356)
                                       .+..++..+.+|+.+||+.||++||||.||++.|+++.+++...
T Consensus       255 -----------------~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~~~~  298 (311)
T d1r0pa_         255 -----------------QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE  298 (311)
T ss_dssp             -----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred             -----------------CcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhhhhh
Confidence                             00133446789999999999999999999999999998876554

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-46  Score=340.21  Aligned_cols=209  Identities=22%  Similarity=0.242  Sum_probs=170.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++++.||+|+||+||+|+++.+|+.||||+++..   .....+.+.+|+.+|+.++|||||++             
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeE
Confidence            35799999999999999999999999999999999743   23345778999999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+++   ||||||||+|||++.+|.+||+|||+|+.....  
T Consensus        83 mE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~--  157 (316)
T d1fota_          83 MDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDV--  157 (316)
T ss_dssp             ECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTSCEEECCCSSCEECSSC--
T ss_pred             eeecCCccccccccccccccccHHHHHHHHHHHhhhhhccCc---EEccccCchheeEcCCCCEEEecCccceEeccc--
Confidence                                    447889999999999999   999999999999999999999999999875432  


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                           .....||+.|+|||++.+..++.++|||||||++|||+||+.||.....     ..            ++...+.
T Consensus       158 -----~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~-----~~------------~~~~i~~  215 (316)
T d1fota_         158 -----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT-----MK------------TYEKILN  215 (316)
T ss_dssp             -----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HH------------HHHHHHH
T ss_pred             -----cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH-----HH------------HHHHHHc
Confidence                 2346799999999999999999999999999999999999999974211     11            1111111


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                      .....                +...+..+.+++.+||..||.+||     |++++++
T Consensus       216 ~~~~~----------------p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         216 AELRF----------------PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             CCCCC----------------CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCCC----------------CCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            11100                002233578999999999999996     8899876

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-45  Score=333.29  Aligned_cols=215  Identities=17%  Similarity=0.151  Sum_probs=170.2

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC------ccchHHHHHHHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC------QGASKSFMAECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~l----------  134 (356)
                      .++|++.+.||+|+||+||+|++..+|+.||||+++...      ....+.+.+|+.+|++++|||||++          
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            356999999999999999999999999999999996432      1235679999999999999999997          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC----ceEEccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL----FAHIGDFELAR  183 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~----~~kl~Dfg~a~  183 (356)
                                                 ..++.|++.||.|||+.+   |+||||||+|||++.++    .+||+|||+++
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~---ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~  165 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH  165 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcc---eeecccccceEEEecCCCcccceEecchhhhh
Confidence                                       558899999999999999   99999999999998776    59999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ......     ......||+.|+|||++.+..++.++|||||||++|||++|+.||.....     .+....        
T Consensus       166 ~~~~~~-----~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-----~~~~~~--------  227 (293)
T d1jksa_         166 KIDFGN-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK-----QETLAN--------  227 (293)
T ss_dssp             ECTTSC-----BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHH--------
T ss_pred             hcCCCc-----cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH-----HHHHHH--------
Confidence            764322     22346789999999999999999999999999999999999999974321     111110        


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                          ........            ........+..+.+|+.+||+.||++|||++|+++
T Consensus       228 ----i~~~~~~~------------~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         228 ----VSAVNYEF------------EDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             ----HHTTCCCC------------CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ----HHhcCCCC------------CchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                00000000            00000123345789999999999999999999976

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-46  Score=338.18  Aligned_cols=229  Identities=21%  Similarity=0.230  Sum_probs=168.7

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccC-ccchHHHHHHHHHHhhc-CCCChHHH----
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQC-QGASKSFMAECKALKNI-CHRNLVRF----  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l----  134 (356)
                      .+....++|++.+.||+|+||.||+|++..     +++.||||+++... ....+.+..|..++.++ +|+||+.+    
T Consensus         7 ~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~   86 (299)
T d1ywna1           7 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGAC   86 (299)
T ss_dssp             HHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeee
Confidence            344445789999999999999999999753     45789999987543 33456788888888877 57888865    


Q ss_pred             --------------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCC
Q 039228          135 --------------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPS  164 (356)
Q Consensus       135 --------------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~  164 (356)
                                                                        +.++.||+.||.|||+++   ||||||||+
T Consensus        87 ~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---ivHrDlKp~  163 (299)
T d1ywna1          87 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAAR  163 (299)
T ss_dssp             CSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGG
T ss_pred             ccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCC---CcCCcCCcc
Confidence                                                              347889999999999999   999999999


Q ss_pred             CeEeCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcC-CCCCCccc
Q 039228          165 NVLLDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTR-RKPIDFMF  243 (356)
Q Consensus       165 NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg-~~Pf~~~~  243 (356)
                      |||++.++.+||+|||+|+.......  ........||+.|+|||++.+..++.++|||||||++|||+|| .+||....
T Consensus       164 NILl~~~~~~Kl~DFGla~~~~~~~~--~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~  241 (299)
T d1ywna1         164 NILLSEKNVVKICDFGLARDIYKDPD--YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  241 (299)
T ss_dssp             GEEECGGGCEEECC------CCSCTT--SCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ceeECCCCcEEEccCcchhhcccccc--ccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999986543322  2233456799999999999999999999999999999999997 56775432


Q ss_pred             cCCccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          244 EGDLNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      .. ..+........            .....                  ..++..+.+++.+||+.||++|||+.+|++.
T Consensus       242 ~~-~~~~~~~~~~~------------~~~~~------------------~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         242 ID-EEFCRRLKEGT------------RMRAP------------------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             CS-HHHHHHHHHTC------------CCCCC------------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HH-HHHHHHHhcCC------------CCCCC------------------ccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            21 11222111111            00100                  1233467899999999999999999999999


Q ss_pred             HHHhhhh
Q 039228          324 LQSVNNI  330 (356)
Q Consensus       324 L~~i~~~  330 (356)
                      |+.+.++
T Consensus       291 L~~ilq~  297 (299)
T d1ywna1         291 LGNLLQA  297 (299)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9998764

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-46  Score=331.52  Aligned_cols=214  Identities=23%  Similarity=0.368  Sum_probs=167.3

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ..++|++.+.||+|+||.||+|+++  +..||||+++..  ...+.+.+|+.++++++||||+++               
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~--~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~   80 (262)
T d1byga_           5 NMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT   80 (262)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred             CHHHeEEeEEEecCCCeEEEEEEEC--CeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEE
Confidence            3467899999999999999999985  688999999643  345789999999999999999987               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               +.++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++..... 
T Consensus        81 ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~---ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~-  156 (262)
T d1byga_          81 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-  156 (262)
T ss_dssp             CCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECTTSCEEECCCCC--------
T ss_pred             eccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCc---eeccccchHhheecCCCCEeecccccceecCCC-
Confidence                                     568999999999999998   999999999999999999999999999864322 


Q ss_pred             CCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                            .....++..|+|||++.+..++.++|||||||++|||+| |++||......  .+...+....           
T Consensus       157 ------~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~--~~~~~i~~~~-----------  217 (262)
T d1byga_         157 ------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEKGY-----------  217 (262)
T ss_dssp             -----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTTTC-----------
T ss_pred             ------CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCC-----------
Confidence                  223456889999999999999999999999999999998 78887643221  2222211110           


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                       ...                  .+..++..+.+|+.+||+.||++||||.+|+++|+.++.
T Consensus       218 -~~~------------------~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         218 -KMD------------------APDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             -CCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CCC------------------CCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence             001                  011333467899999999999999999999999998864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-45  Score=343.56  Aligned_cols=208  Identities=20%  Similarity=0.181  Sum_probs=169.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      ++|++++.||+|+||.||+|+++.+|+.||||++...   .....+.+.+|+.+|+.++|||||++              
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            5799999999999999999999999999999999743   23345678999999999999999987              


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.||+.||.|||+++   ||||||||+|||++.+|.+||+|||+|+.....   
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~---iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~---  194 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR---  194 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTSCEEECCCTTCEECSSC---
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC---EecCcCCHHHcccCCCCCEEeeeceeeeecccc---
Confidence                                   458999999999999999   999999999999999999999999999865422   


Q ss_pred             CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                          .....||+.|+|||++.+..++.++|||||||++|||+||+.||....     ......        .+...... 
T Consensus       195 ----~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~-----~~~~~~--------~i~~~~~~-  256 (350)
T d1rdqe_         195 ----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ-----PIQIYE--------KIVSGKVR-  256 (350)
T ss_dssp             ----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH--------HHHHCCCC-
T ss_pred             ----cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC-----HHHHHH--------HHhcCCCC-
Confidence                234679999999999999999999999999999999999999996421     111111        01110000 


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCC-----ChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRM-----NVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RP-----s~~~vl~  322 (356)
                       .                  +......+.+++.+||+.||.+|+     |+++|++
T Consensus       257 -~------------------p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         257 -F------------------PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             -C------------------CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             -C------------------CccCCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence             0                  002233578999999999999994     8999886

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-45  Score=340.63  Aligned_cols=212  Identities=20%  Similarity=0.251  Sum_probs=171.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH-------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF-------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l-------------  134 (356)
                      .++|++++.||+|+||.||+|+++.+++.||||++++.   .....+.+.+|+.+|++++||||+++             
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            46799999999999999999999999999999999753   23345778999999999999999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+++   ||||||||+|||++.+|.+||+|||+|+...... 
T Consensus        84 ~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~---iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~-  159 (337)
T d1o6la_          84 MEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD---VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG-  159 (337)
T ss_dssp             EECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT-
T ss_pred             eeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcC---ccccccCHHHeEecCCCCEEEeecccccccccCC-
Confidence                                    458889999999999999   9999999999999999999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         ......+||+.|+|||++.+..|+.++|||||||++|||++|++||.....     ....            .....
T Consensus       160 ---~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~-----~~~~------------~~i~~  219 (337)
T d1o6la_         160 ---ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----ERLF------------ELILM  219 (337)
T ss_dssp             ---CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH------------HHHHH
T ss_pred             ---cccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH-----HHHH------------HHHhc
Confidence               233457899999999999999999999999999999999999999974321     1111            11111


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                      .....                +......+.+|+.+||+.||.+||+     +.++++
T Consensus       220 ~~~~~----------------p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         220 EEIRF----------------PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CCCCC----------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCCC----------------CccCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence            11000                0022335679999999999999995     777765

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-46  Score=336.71  Aligned_cols=221  Identities=24%  Similarity=0.305  Sum_probs=164.5

Q ss_pred             CCCCccccceecCceEEEEEEECCC---CeEEEEEEeecc---CccchHHHHHHHHHHhhcCCCChHHH-----------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLN---RAVVAIKVLSIQ---CQGASKSFMAECKALKNICHRNLVRF-----------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~---~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l-----------  134 (356)
                      ++|++.+.||+|+||.||+|++...   ...||||+++..   .....+.|.+|+.+|++++||||+++           
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~l   87 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   87 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchhe
Confidence            5699999999999999999987532   347899998643   23345679999999999999999987           


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                +.++.||+.||.|||+++   |+||||||+||+++.++.+||+|||+++.....
T Consensus        88 v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~---iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~  164 (273)
T d1u46a_          88 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  164 (273)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             eeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCC---EeeeeecHHHhccccccceeeccchhhhhcccC
Confidence                                      568999999999999999   999999999999999999999999999876543


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCCccHHHHHHHhCCCchHHHhhh
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNL  267 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (356)
                      ... ........++..|+|||.+.+..++.++|||||||++|||+| |..||......     +....        +...
T Consensus       165 ~~~-~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~-----~~~~~--------i~~~  230 (273)
T d1u46a_         165 DDH-YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS-----QILHK--------IDKE  230 (273)
T ss_dssp             CCE-EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HHHHH--------HHTS
T ss_pred             CCc-ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHH-----HHHHH--------HHhC
Confidence            321 223334567889999999999999999999999999999998 89999743211     11111        1111


Q ss_pred             hhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHh
Q 039228          268 VLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSV  327 (356)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i  327 (356)
                      .....                  .+..++..+.+|+.+||+.||++||||.+|++.|++.
T Consensus       231 ~~~~~------------------~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         231 GERLP------------------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             CCCCC------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCCCC------------------CcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            00000                  0113344678999999999999999999999999875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-45  Score=332.64  Aligned_cols=238  Identities=25%  Similarity=0.279  Sum_probs=172.3

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++++.||+|+||+||+|++..+++.||||+++...  ....+.+.+|+.+|++++|||||++               
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            68999999999999999999999999999999996543  2335788999999999999999987               


Q ss_pred             -----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCC
Q 039228          135 -----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNP  191 (356)
Q Consensus       135 -----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~  191 (356)
                                             ..++.||+.||.|||+++   ||||||||+|||++.++.+||+|||+|+......  
T Consensus        82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~---IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~--  156 (298)
T d1gz8a_          82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV--  156 (298)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCS--
T ss_pred             ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCC---EEccccCchheeecccCcceeccCCcceeccCCc--
Confidence                                   568999999999999999   9999999999999999999999999998654322  


Q ss_pred             CccCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC-CC-chHHHhhhh
Q 039228          192 TQSSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF-PN-RVMDIVNLV  268 (356)
Q Consensus       192 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~  268 (356)
                        .......||+.|+|||.+.... ++.++|||||||++|+|++|+.||......+ .+........ +. .....+...
T Consensus       157 --~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~  233 (298)
T d1gz8a_         157 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLGTPDEVVWPGVTSM  233 (298)
T ss_dssp             --BCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGS
T ss_pred             --ccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHH-HHHHHHHhcCCCchhhccccccc
Confidence              2334467899999999887765 4789999999999999999999997532211 1111111111 11 100000000


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       ...    ......................+.+|+.+||+.||++|||++|+++
T Consensus       234 -~~~----~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         234 -PDY----KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             -TTC----CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -ccc----ccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence             000    0000001111111111123346789999999999999999999986

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=330.48  Aligned_cols=235  Identities=21%  Similarity=0.247  Sum_probs=164.7

Q ss_pred             ccccceecCceEEEEEEECCCCeEEEEEEeeccCcc-----chHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           76 LINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG-----ASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        76 ~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .+++||+|+||+||+|++..+|+.||||+++.....     ..+.+.+|+.+|++++|||||++                
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            467899999999999999999999999998644221     23568899999999999999987                


Q ss_pred             ---------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCCc
Q 039228          135 ---------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 ---------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                           ..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++......    
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~---iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~----  154 (299)
T d1ua2a_          82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN----  154 (299)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC----
T ss_pred             hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccc---eecccCCcceEEecCCCccccccCccccccCCCc----
Confidence                                 568999999999999999   9999999999999999999999999998654322    


Q ss_pred             cCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhccc
Q 039228          194 SSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLND  272 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  272 (356)
                      .......||+.|+|||++.+. .++.++|||||||++|||+||.+||......+ .+..............+.+..-...
T Consensus       155 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~  233 (299)
T d1ua2a_         155 RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRIFETLGTPTEEQWPDMCSLPD  233 (299)
T ss_dssp             CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTSSSTTSSTT
T ss_pred             ccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHH-HHHHHHHhcCCCChhhccchhccch
Confidence            223346789999999998754 57999999999999999999999997432211 1111111111111000000000000


Q ss_pred             cccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          273 NKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..........-.....    ......+.+|+.+||+.||++|||++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~----~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         234 YVTFKSFPGIPLHHIF----SAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             CCCCCCCCCCCHHHHC----TTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             hhhhccCCCCChHHhc----ccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence            0000000000000000    122346789999999999999999999875

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-45  Score=332.96  Aligned_cols=221  Identities=22%  Similarity=0.311  Sum_probs=170.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCe--EEEEEEeecc-CccchHHHHHHHHHHhhc-CCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRA--VVAIKVLSIQ-CQGASKSFMAECKALKNI-CHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~--~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l-------------  134 (356)
                      ++|++.+.||+|+||.||+|+++.++.  .||||.++.. .....+.+.+|+.+|+++ +|||||++             
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            579999999999999999999987776  4677877543 333456799999999998 79999987             


Q ss_pred             ----------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCce
Q 039228          135 ----------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFA  174 (356)
Q Consensus       135 ----------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~  174 (356)
                                                              +.++.||+.||.|||+.+   |+||||||+|||++.++.+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~---iiHrDlkp~NIL~~~~~~~  166 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVA  166 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECGGGCE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCC---ccccccccceEEEcCCCce
Confidence                                                    347889999999999999   9999999999999999999


Q ss_pred             EEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCC-CCCCccccCCccHHHHH
Q 039228          175 HIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRR-KPIDFMFEGDLNLHNFA  253 (356)
Q Consensus       175 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~-~Pf~~~~~~~~~~~~~~  253 (356)
                      ||+|||+++......     ......||..|+|||.+.+..++.++|||||||++|||++|. +||...     ...+..
T Consensus       167 kl~DfG~a~~~~~~~-----~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~-----~~~~~~  236 (309)
T d1fvra_         167 KIADFGLSRGQEVYV-----KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM-----TCAELY  236 (309)
T ss_dssp             EECCTTCEESSCEEC-----CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHH
T ss_pred             EEccccccccccccc-----cccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC-----CHHHHH
Confidence            999999997554322     223456899999999999999999999999999999999975 566532     111111


Q ss_pred             HHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhhc
Q 039228          254 RMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNILL  332 (356)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~~  332 (356)
                      ..         +.......                  .+..++..+.+|+.+||+.||++||||++|++.|+++.+...
T Consensus       237 ~~---------i~~~~~~~------------------~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~  288 (309)
T d1fvra_         237 EK---------LPQGYRLE------------------KPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  288 (309)
T ss_dssp             HH---------GGGTCCCC------------------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             HH---------HHhcCCCC------------------CCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCc
Confidence            11         11100000                  011344568899999999999999999999999999987653

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=330.34  Aligned_cols=239  Identities=23%  Similarity=0.263  Sum_probs=171.4

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHH--HHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFM--AECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~--~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|.+.+.||+|+||.||+|++.  |+.||||+++...   .+.+.  .|+..+..++||||+++               
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~--g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~   77 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW   77 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET--TEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEEC--CEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEE
Confidence            45788899999999999999974  7999999986432   23333  45556668899999987               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcC-----CCcEEecCCCCCCeEeCCCCceEEcccccccc
Q 039228          135 -------------------------ISIAIDVASALDYLHHHC-----QELILHCDPKPSNVLLDNDLFAHIGDFELARF  184 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~-----~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~  184 (356)
                                               +.++.+++.||+|||+.+     .++||||||||+||||+.++.+||+|||+++.
T Consensus        78 lv~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~  157 (303)
T d1vjya_          78 LVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             EEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcccc
Confidence                                     568899999999999741     12399999999999999999999999999987


Q ss_pred             cccCCCCCccCCCCccccccccchhhhcCCC------CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC
Q 039228          185 RQEVSNPTQSSSNGVRRTIGYTALDYDLGSE------VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP  258 (356)
Q Consensus       185 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~  258 (356)
                      ................||+.|+|||++.+..      ++.++|||||||++|||+||..||..............  ...
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~--~~~  235 (303)
T d1vjya_         158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV--PSD  235 (303)
T ss_dssp             EETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTS--CSS
T ss_pred             ccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcc--ccc
Confidence            7654443333445678999999999987643      56789999999999999999988754332221111000  000


Q ss_pred             CchHHHh----hhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhh
Q 039228          259 NRVMDIV----NLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNI  330 (356)
Q Consensus       259 ~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~  330 (356)
                      .....+.    +..+.+....             .....+++..+.+|+.+||+.||.+|||+.||++.|+++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~p~~~~-------------~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         236 PSVEEMRKVVCEQKLRPNIPN-------------RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CCHHHHHHHHTTSCCCCCCCG-------------GGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhccccCCCCCc-------------ccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            1111111    1111111110             001125667789999999999999999999999999998765

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-44  Score=329.01  Aligned_cols=238  Identities=23%  Similarity=0.270  Sum_probs=169.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCC-CeEEEEEEeeccC--ccchHHHHHHHHHHhhc---CCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLN-RAVVAIKVLSIQC--QGASKSFMAECKALKNI---CHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~-~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l----------  134 (356)
                      .++|++++.||+|+||+||+|++..+ ++.||||+++...  ......+.+|+.+|+.|   +||||+++          
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46899999999999999999999654 6789999986432  22334566788777665   79999986          


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccc
Q 039228          135 ---------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFEL  181 (356)
Q Consensus       135 ---------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~  181 (356)
                                                       ..++.|++.||+|||+++   ||||||||+|||++.++.+||+|||+
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~---ivHrDiKp~NILi~~~~~~kl~dfg~  162 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGL  162 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECSCCS
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCC---EEecCCCccEEEEcCCCCeeecchhh
Confidence                                             458899999999999999   99999999999999999999999999


Q ss_pred             ccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCch
Q 039228          182 ARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRV  261 (356)
Q Consensus       182 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~  261 (356)
                      ++.....     .......||+.|+|||++.+..|+.++||||+||++|||++|+.||......+ .+............
T Consensus       163 ~~~~~~~-----~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~  236 (305)
T d1blxa_         163 ARIYSFQ-----MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPGE  236 (305)
T ss_dssp             CCCCCGG-----GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCG
T ss_pred             hhhhccc-----ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHH-HHHHHHHhhCCCch
Confidence            8754322     23345778999999999999999999999999999999999999997532211 12222211111110


Q ss_pred             HHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          262 MDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       262 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ..+-......... .......-....    .......+.+|+.+||+.||++|||+.|+++
T Consensus       237 ~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         237 EDWPRDVALPRQA-FHSKSAQPIEKF----VTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             GGSCTTCSSCGGG-SCCCCCCCGGGT----CCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hcccccccchhhh-hccccccchhhc----cccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            0000000000000 000000000000    1122345678999999999999999999875

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=331.97  Aligned_cols=245  Identities=20%  Similarity=0.251  Sum_probs=171.1

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeecc--CccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ--CQGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++++.||+|+||+||+|++..+|+.||||++...  .....+.+.+|+.+|+.++||||+++              
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            46799999999999999999999999999999998644  23345678999999999999999975              


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     ..++.|++.||.|||+.+   |+||||||+|||++.++.+||+|||+++
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~---ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCC---EEecCcCchheeecCCCcEEeeecceee
Confidence                                           458899999999999999   9999999999999999999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC--CCc
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF--PNR  260 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~  260 (356)
                      .................||+.|+|||++.+. .++.++|||||||++|||++|+.||....... .+........  +..
T Consensus       166 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~  244 (318)
T d3blha1         166 AFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALISQLCGSITPE  244 (318)
T ss_dssp             ECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTT
T ss_pred             ecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHH-HHHHHHHhcCCCChh
Confidence            7654433333344456799999999998765 68999999999999999999999997532211 1111111111  111


Q ss_pred             h-HHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          261 V-MDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       261 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      . ....+......... .............  .......+.+|+.+||+.||++|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         245 VWPNVDNYELYEKLEL-VKGQKRKVKDRLK--AYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             TSTTCCCC-------C-CSSCCBCHHHHHH--HHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hccccchhhhhhhhcc-cccccccchhhhc--cccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence            0 00000000000000 0000000000000  0111235678999999999999999999984

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-44  Score=336.94  Aligned_cols=213  Identities=17%  Similarity=0.196  Sum_probs=165.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHH---HHHHHhhcCCCChHHH----------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMA---ECKALKNICHRNLVRF----------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~---E~~~l~~l~h~niv~l----------  134 (356)
                      .++|++.+.||+|+||.||+|++..+|+.||||++....   ......+.+   ++.+++.++|||||++          
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            468999999999999999999999999999999986432   112233334   4677788899999987          


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+++   ||||||||+|||++.+|.+||+|||+|+....
T Consensus        83 ~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~  159 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSK  159 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECSSSCEEECCCTTCEECSS
T ss_pred             EEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCC---ccceeeccceeEEcCCCcEEEeeeceeeecCC
Confidence                                       458899999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhh
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVN  266 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (356)
                      .      ......||+.|+|||++.. ..++.++|||||||++|||+||+.||......  ............       
T Consensus       160 ~------~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~--~~~~~~~~~~~~-------  224 (364)
T d1omwa3         160 K------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DKHEIDRMTLTM-------  224 (364)
T ss_dssp             S------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSS--CHHHHHHHSSSC-------
T ss_pred             C------cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcccC-------
Confidence            2      2234679999999999974 56899999999999999999999999753322  121111111110       


Q ss_pred             hhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          267 LVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                           ....                +...+..+.+|+.+||+.||.+|||     ++++++
T Consensus       225 -----~~~~----------------~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         225 -----AVEL----------------PDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             -----CCCC----------------CSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             -----CCCC----------------CCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence                 0000                0022335789999999999999999     577765

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-45  Score=331.02  Aligned_cols=224  Identities=22%  Similarity=0.297  Sum_probs=172.2

Q ss_pred             hcCCCCccccceecCceEEEEEEECCCC-------eEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFDLNR-------AVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~-------~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l------  134 (356)
                      ..++|++.+.||+|+||.||+|+...++       ..||||+++.... .....+.+|...+.++ +|||||++      
T Consensus        11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            3567999999999999999999975543       5799999976543 3346788999999888 79999987      


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeE
Q 039228          135 -----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVL  167 (356)
Q Consensus       135 -----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIl  167 (356)
                                                                     +.++.||+.||.|||+.+   ||||||||+|||
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~---ivHrDiKp~NiL  167 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKK---CIHRDLAARNVL  167 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred             CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCC---EEeeeeccccee
Confidence                                                           458889999999999999   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCC
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGD  246 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~  246 (356)
                      ++.++.+||+|||+++.......  ........+|+.|+|||.+.++.|+.++|||||||++|||++ |.+||...... 
T Consensus       168 l~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~-  244 (299)
T d1fgka_         168 VTEDNVMKIADFGLARDIHHIDY--YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE-  244 (299)
T ss_dssp             ECTTCCEEECSTTCCCCGGGCCT--TCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-
T ss_pred             ecCCCCeEeccchhhcccccccc--ccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHH-
Confidence            99999999999999987654432  223345678999999999999999999999999999999998 78888642211 


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                       ....            .+........+                  ..++..+.+|+.+||+.||.+||||.||++.|++
T Consensus       245 -~~~~------------~i~~~~~~~~p------------------~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~  293 (299)
T d1fgka_         245 -ELFK------------LLKEGHRMDKP------------------SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR  293 (299)
T ss_dssp             -HHHH------------HHHTTCCCCCC------------------SSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             -HHHH------------HHHcCCCCCCC------------------ccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHH
Confidence             1111            11111111110                  1234467899999999999999999999999999


Q ss_pred             hhhh
Q 039228          327 VNNI  330 (356)
Q Consensus       327 i~~~  330 (356)
                      +.+.
T Consensus       294 i~a~  297 (299)
T d1fgka_         294 IVAL  297 (299)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            8654

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=331.04  Aligned_cols=225  Identities=21%  Similarity=0.276  Sum_probs=177.7

Q ss_pred             hcCCCCccccceecCceEEEEEEEC-----CCCeEEEEEEeeccCc-cchHHHHHHHHHHhhc-CCCChHHH--------
Q 039228           70 ATDGFPLINLIGVGSFDAVYQGVFD-----LNRAVVAIKVLSIQCQ-GASKSFMAECKALKNI-CHRNLVRF--------  134 (356)
Q Consensus        70 ~~~~~~~~~~lg~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l--------  134 (356)
                      ..++|++.+.||+|+||.||+|++.     .+++.||||+++.... .....+.+|+.+++.+ +|||||++        
T Consensus        21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            3467999999999999999999873     4568999999975433 3445789999999999 69999987        


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeE
Q 039228          135 -----------------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVL  167 (356)
Q Consensus       135 -----------------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIl  167 (356)
                                                                     ..++.||+.||.|||+++   ||||||||+||+
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~---ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccccccccc
Confidence                                                           347899999999999999   999999999999


Q ss_pred             eCCCCceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHc-CCCCCCccccCC
Q 039228          168 LDNDLFAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVT-RRKPIDFMFEGD  246 (356)
Q Consensus       168 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~ellt-g~~Pf~~~~~~~  246 (356)
                      ++.++.+||+|||+++.......  ........||+.|+|||++.+..++.++|||||||++|||+| |.+||... ...
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~-~~~  254 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSN--YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM-PVD  254 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTT--SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-CSS
T ss_pred             ccccCcccccccchheeccCCCc--ceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC-CHH
Confidence            99999999999999987654332  233445788999999999999999999999999999999999 55555432 222


Q ss_pred             ccHHHHHHHhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHH
Q 039228          247 LNLHNFARMAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQS  326 (356)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~  326 (356)
                      ..+...+...            ......                  ..++..+.+|+.+||+.||.+||||++|+++|++
T Consensus       255 ~~~~~~i~~~------------~~~~~~------------------~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~  304 (311)
T d1t46a_         255 SKFYKMIKEG------------FRMLSP------------------EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEK  304 (311)
T ss_dssp             HHHHHHHHHT------------CCCCCC------------------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHHHHHHhcC------------CCCCCc------------------ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence            2222222222            111111                  1233467899999999999999999999999998


Q ss_pred             hhhh
Q 039228          327 VNNI  330 (356)
Q Consensus       327 i~~~  330 (356)
                      +...
T Consensus       305 ~i~~  308 (311)
T d1t46a_         305 QISE  308 (311)
T ss_dssp             HHHH
T ss_pred             hhcc
Confidence            7554

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-45  Score=327.86  Aligned_cols=204  Identities=20%  Similarity=0.227  Sum_probs=163.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc------chHHHHHHHHHHhhcC--CCChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG------ASKSFMAECKALKNIC--HRNLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~l--------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++......      ...++.+|+.+|++++  |||||++        
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~   82 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD   82 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC
Confidence            35799999999999999999999999999999999743211      1234678999999997  8999987        


Q ss_pred             ------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-CCceEEccccccc
Q 039228          135 ------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-DLFAHIGDFELAR  183 (356)
Q Consensus       135 ------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-~~~~kl~Dfg~a~  183 (356)
                                                    ..++.||+.||.|||+.+   |+||||||+|||++. ++.+||+|||+|+
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~---iiHrDiKp~NIll~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCC---CccccCcccceEEecCCCeEEECccccce
Confidence                                          458899999999999999   999999999999984 5799999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcCCCC-CCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEV-STNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      .....      ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||....       .......     
T Consensus       160 ~~~~~------~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-------~i~~~~~-----  221 (273)
T d1xwsa_         160 LLKDT------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIRGQV-----  221 (273)
T ss_dssp             ECCSS------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHCCC-----
T ss_pred             ecccc------cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch-------HHhhccc-----
Confidence            64322      2234679999999999987765 567899999999999999999996321       1111000     


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                           .+..                      ..+..+.+|+.+||+.||++|||++|+++
T Consensus       222 -----~~~~----------------------~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         222 -----FFRQ----------------------RVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             -----CCSS----------------------CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -----CCCC----------------------CCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence                 0000                      12235689999999999999999999975

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-45  Score=333.58  Aligned_cols=224  Identities=21%  Similarity=0.321  Sum_probs=176.1

Q ss_pred             hhcCCCCccccceecCceEEEEEEECC-----CCeEEEEEEeeccCc-cchHHHHHHHHHHhhcCCCChHHH--------
Q 039228           69 KATDGFPLINLIGVGSFDAVYQGVFDL-----NRAVVAIKVLSIQCQ-GASKSFMAECKALKNICHRNLVRF--------  134 (356)
Q Consensus        69 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l--------  134 (356)
                      ...++|++.+.||+|+||.||+|.+..     +++.||||+++.... .....+.+|+.++++++||||+++        
T Consensus        17 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          17 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence            345679999999999999999998852     357899999975432 334568999999999999999987        


Q ss_pred             ---------------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceE
Q 039228          135 ---------------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAH  175 (356)
Q Consensus       135 ---------------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~k  175 (356)
                                                             +.++.+++.||.|||+.+   |+||||||+|||++.++.+|
T Consensus        97 ~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~---ivHrDlk~~NiLld~~~~~K  173 (308)
T d1p4oa_          97 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVK  173 (308)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCSGGGEEECTTCCEE
T ss_pred             ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCC---eeeceEcCCceeecCCceEE
Confidence                                                   348889999999999998   99999999999999999999


Q ss_pred             EcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCC-CCCCccccCCccHHHHHH
Q 039228          176 IGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRR-KPIDFMFEGDLNLHNFAR  254 (356)
Q Consensus       176 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~-~Pf~~~~~~~~~~~~~~~  254 (356)
                      |+|||+++.+.....  ........+|+.|+|||.+.+..++.++||||||+++|||+||. +||...     ...+...
T Consensus       174 l~DFGla~~~~~~~~--~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~-----~~~~~~~  246 (308)
T d1p4oa_         174 IGDFGMTRDIYETDY--YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-----SNEQVLR  246 (308)
T ss_dssp             ECCTTCCCGGGGGGC--EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-----CHHHHHH
T ss_pred             EeecccceeccCCcc--eeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCC-----CHHHHHH
Confidence            999999987654432  22234457899999999999999999999999999999999985 676532     1111111


Q ss_pred             HhCCCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          255 MAFPNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       255 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                      .        +.+.....                   .+..++..+.+|+.+||+.||++||||.+|+++|++..+
T Consensus       247 ~--------i~~~~~~~-------------------~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         247 F--------VMEGGLLD-------------------KPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             H--------HHTTCCCC-------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             H--------HHhCCCCC-------------------CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            1        11111100                   011344568999999999999999999999999977754

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=6e-44  Score=323.55  Aligned_cols=239  Identities=21%  Similarity=0.231  Sum_probs=168.6

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++++.||+|+||+||+|+++ +++.||||+++...  ....+.+.+|+.+|++++||||+++               
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e   80 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE   80 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred             CCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEE
Confidence            68999999999999999999986 66999999997543  2335789999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.||+.||+|||+.+   ||||||||+|||++.++.+||+|||.+.......   
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~---IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~---  154 (286)
T d1ob3a_          81 HLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPV---  154 (286)
T ss_dssp             CCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred             eehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCc---EEecCCCCceeeEcCCCCEEecccccceecccCc---
Confidence                                  568999999999999999   9999999999999999999999999998654322   


Q ss_pred             ccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhcc
Q 039228          193 QSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLLN  271 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (356)
                       .......+++.|+|||.+.+. .++.++|||||||++|||++|+.||......+ .+..............+.+..-..
T Consensus       155 -~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~  232 (286)
T d1ob3a_         155 -RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELP  232 (286)
T ss_dssp             --------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGST
T ss_pred             -cccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHH-HHHHHHHhhCCCChhhccchhhhh
Confidence             222335678999999998764 56899999999999999999999997533211 122222222211111110000000


Q ss_pred             ccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          272 DNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ....   ....................+.+++.+||+.||++|||++|+++
T Consensus       233 ~~~~---~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         233 KYDP---NFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             TCCT---TCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hccc---ccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0000   00000000001111123346789999999999999999999974

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.1e-43  Score=319.94  Aligned_cols=215  Identities=17%  Similarity=0.211  Sum_probs=168.7

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCcc---------chHHHHHHHHHHhhcC-CCChHHH------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQG---------ASKSFMAECKALKNIC-HRNLVRF------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~---------~~~~~~~E~~~l~~l~-h~niv~l------  134 (356)
                      .++|++.+.||+|+||+||+|++..+++.||||+++.....         ..+.+.+|+.++++++ ||||+++      
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~   81 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   81 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence            36899999999999999999999999999999999754321         2246889999999997 9999987      


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          135 -------------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       135 -------------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                                     ..++.||+.||+|||+++   |+||||||+|||++.++.+||+|||+++
T Consensus        82 ~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~---ivHrDlkp~Nill~~~~~~kl~DFG~a~  158 (277)
T d1phka_          82 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSC  158 (277)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCSGGGEEECTTCCEEECCCTTCE
T ss_pred             CcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcC---CcccccccceEEEcCCCCeEEccchhee
Confidence                                           568999999999999999   9999999999999999999999999998


Q ss_pred             ccccCCCCCccCCCCccccccccchhhhcC------CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhC
Q 039228          184 FRQEVSNPTQSSSNGVRRTIGYTALDYDLG------SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAF  257 (356)
Q Consensus       184 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~  257 (356)
                      ......     ......||..|+|||++.+      ..++.++||||+||++|||++|+.||....... ..........
T Consensus       159 ~~~~~~-----~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~-~~~~i~~~~~  232 (277)
T d1phka_         159 QLDPGE-----KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML-MLRMIMSGNY  232 (277)
T ss_dssp             ECCTTC-----CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC
T ss_pred             EccCCC-----ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHH-HHHHHHhCCC
Confidence            765422     2234678999999999853      357889999999999999999999997432111 0111111000


Q ss_pred             CCchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          258 PNRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       258 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      .          ...                  ......+..+.+|+.+||+.||.+|||+.||++
T Consensus       233 ~----------~~~------------------~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         233 Q----------FGS------------------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             C----------CCT------------------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             C----------CCC------------------cccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            0          000                  001133346789999999999999999999864

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-44  Score=329.85  Aligned_cols=211  Identities=23%  Similarity=0.280  Sum_probs=167.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC---ccchHHHHHHHHHHh-hcCCCChHHH-------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC---QGASKSFMAECKALK-NICHRNLVRF-------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~-~l~h~niv~l-------------  134 (356)
                      ++|++.+.||+|+||+||+|++..+++.||||++++..   ....+.+..|..++. .++|||||++             
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            67999999999999999999999999999999997432   334456777777765 6899999987             


Q ss_pred             ------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCC
Q 039228          135 ------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                              ..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++...... 
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~---iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~-  157 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD-  157 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT---CBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT-
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCC---eeeccCcccceeecCCCceeccccchhhhccccc-
Confidence                                    558899999999999999   9999999999999999999999999998654322 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                         .......||+.|+|||++.+..++.++|||||||++|||++|+.||......  .+....               ..
T Consensus       158 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~--~~~~~i---------------~~  217 (320)
T d1xjda_         158 ---AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFHSI---------------RM  217 (320)
T ss_dssp             ---CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHH---------------HH
T ss_pred             ---ccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHH--HHHHHH---------------Hc
Confidence               2233467899999999999999999999999999999999999999742211  111111               10


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChH-HHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVP-NAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~-~vl~  322 (356)
                      ..+..                +..++..+.+|+.+||..||++|||+. +|++
T Consensus       218 ~~~~~----------------p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         218 DNPFY----------------PRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             CCCCC----------------CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             CCCCC----------------CccCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence            11000                002233578999999999999999985 6754

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-43  Score=322.34  Aligned_cols=227  Identities=19%  Similarity=0.229  Sum_probs=175.8

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....  .+++..|+++++.++|+|++..                
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme   83 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   83 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEE
Confidence            3579999999999999999999999999999999875432  3457889999999998876654                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeC---CCCceEEcccccccccccCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLD---NDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~---~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                            ..++.|++.||+|||+++   ||||||||+|||++   .+..++|+|||+|+......
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~---iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~  160 (299)
T d1ckia_          84 LLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  160 (299)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTT
T ss_pred             EcCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCC---eeeccCCHhhccccccCCCceeeeeccCcceeccccc
Confidence                                  568899999999999999   99999999999986   45579999999999775433


Q ss_pred             CCC---ccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCcc--HHHHHHHhCCCchHHH
Q 039228          190 NPT---QSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLN--LHNFARMAFPNRVMDI  264 (356)
Q Consensus       190 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~--~~~~~~~~~~~~~~~~  264 (356)
                      ...   ........||+.|+|||.+.+..++.++|||||||++|||+||+.||.........  ..............  
T Consensus       161 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~--  238 (299)
T d1ckia_         161 THQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIE--  238 (299)
T ss_dssp             TCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHH--
T ss_pred             cccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChh--
Confidence            221   22344578999999999999999999999999999999999999999754332211  11111100000000  


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNN  329 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~  329 (356)
                         .+                      ...++..+.+++..||+.||++||+++++.+.|+.+..
T Consensus       239 ---~~----------------------~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~  278 (299)
T d1ckia_         239 ---VL----------------------CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  278 (299)
T ss_dssp             ---HH----------------------TTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHH
T ss_pred             ---Hh----------------------ccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHH
Confidence               00                      01334567899999999999999999999999988754

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-44  Score=332.12  Aligned_cols=239  Identities=20%  Similarity=0.195  Sum_probs=167.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++++.||+|+||+||+|.+..+++.||||+++...  ....+.+.+|+.+|+.++|||||++              
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            568999999999999999999999999999999997542  2345678999999999999999986              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||.|||+++   |+||||||+|||++.++.+||+|||+++....
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~---IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~  173 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADS  173 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCcchhhcccccccccccccceeccCC
Confidence                                       458999999999999999   99999999999999999999999999986543


Q ss_pred             CCCCCccCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC--chHHH
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN--RVMDI  264 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~  264 (356)
                      .       .....||+.|+|||++.+. .++.++||||+||++|+|++|++||...... ..+..........  .....
T Consensus       174 ~-------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~  245 (346)
T d1cm8a_         174 E-------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMKVTGTPPAEFVQR  245 (346)
T ss_dssp             S-------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHT
T ss_pred             c-------cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChH-HHHHHHHhccCCCcHHHHhh
Confidence            2       2346789999999998764 5689999999999999999999999753221 1111221111111  11000


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ..........   .....................+.+|+.+||..||.+|||+.|+++.
T Consensus       246 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~H  301 (346)
T d1cm8a_         246 LQSDEAKNYM---KGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  301 (346)
T ss_dssp             CSCHHHHHHH---HHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hcchhhhhhh---ccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            0000000000   0000000000001111223356799999999999999999999874

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-44  Score=331.30  Aligned_cols=247  Identities=21%  Similarity=0.190  Sum_probs=171.3

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC-ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC-QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      +++|++++.||+|+||+||+|++..+++.||||+++... ....+.+.+|+.+|+.++||||+++               
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            467999999999999999999999999999999997543 3345678999999999999999976               


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.||+|||+++   ||||||||+|||++.++.+||+|||+++......
T Consensus        87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~---iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~  163 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH  163 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEECTTCCEEECCCTTCEECCGGG
T ss_pred             EEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCC---CcCCCCCcceEEECCCCCEEEcccCceeeccCCC
Confidence                                     458999999999999999   9999999999999999999999999998764433


Q ss_pred             CCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhh
Q 039228          190 NPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLV  268 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (356)
                      .. ........||+.|+|||++.. ..++.++||||+||++|+|++|+.||......+. ................ ...
T Consensus       164 ~~-~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~-~~~  240 (345)
T d1pmea_         164 DH-TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ-LNHILGILGSPSQEDL-NCI  240 (345)
T ss_dssp             CB-CCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCSCCHHHH-HTC
T ss_pred             cc-ceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHH-HHHHhhhccCCChhhh-hhh
Confidence            22 223345778999999999854 5678899999999999999999999975432111 1111111111111000 000


Q ss_pred             hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          269 LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ...................+..........+.+|+.+||+.||++|||++|+++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         241 INLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             CCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            0000000000000000000000001122356899999999999999999999874

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-43  Score=325.90  Aligned_cols=214  Identities=21%  Similarity=0.240  Sum_probs=169.5

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH----------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF----------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l----------------  134 (356)
                      .++|++.+.||+|+||+||+|.+..+++.||||+++.... ....+.+|+.+|+.++|||||++                
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~-~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGT-DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTH-HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcc-cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            4679999999999999999999999999999999976532 34568899999999999999987                


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC--CCceEEcccccccccccCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN--DLFAHIGDFELARFRQEVSN  190 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~--~~~~kl~Dfg~a~~~~~~~~  190 (356)
                                            ..++.||+.||.|||+++   |+||||||+|||++.  .+.+||+|||+++...... 
T Consensus        83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~---iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~-  158 (321)
T d1tkia_          83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD-  158 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcC---CCcccccccceeecCCCceEEEEcccchhhccccCC-
Confidence                                  558899999999999999   999999999999984  4589999999998653321 


Q ss_pred             CCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc
Q 039228          191 PTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL  270 (356)
Q Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (356)
                          ......+|+.|+|||...+..++.++|||||||++|+|++|..||......  ....           .+......
T Consensus       159 ----~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~--~~~~-----------~i~~~~~~  221 (321)
T d1tkia_         159 ----NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ--QIIE-----------NIMNAEYT  221 (321)
T ss_dssp             ----EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHH-----------HHHHTCCC
T ss_pred             ----cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHH--HHHH-----------HHHhCCCC
Confidence                223356789999999999999999999999999999999999999743211  1111           11111000


Q ss_pred             cccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 NDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                      ...                .........+.+|+.+||..||.+|||+.|+++
T Consensus       222 ~~~----------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         222 FDE----------------EAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             CCH----------------HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCh----------------hhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000                000022335689999999999999999999987

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-43  Score=327.81  Aligned_cols=214  Identities=17%  Similarity=0.162  Sum_probs=165.1

Q ss_pred             cCCCCccc-cceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhh-cCCCChHHH--------------
Q 039228           71 TDGFPLIN-LIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKN-ICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~-~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l--------------  134 (356)
                      .++|.+.+ .||+|+||.||+|++..+++.||||+++.     ...+.+|+.++.+ .+|||||++              
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~   84 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   84 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence            46798875 69999999999999999999999999863     2567789998765 489999986              


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC---CCceEEcccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN---DLFAHIGDFELA  182 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~---~~~~kl~Dfg~a  182 (356)
                                                   ..++.||+.||+|||+.+   |+||||||+|||++.   .+.+||+|||+|
T Consensus        85 ~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~---iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          85 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcC---Ccccccccccccccccccccccccccccee
Confidence                                         568999999999999999   999999999999985   567999999999


Q ss_pred             cccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchH
Q 039228          183 RFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVM  262 (356)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~  262 (356)
                      +......     ......||+.|+|||++.+..|+.++|||||||++|+|+||+.||.......  ........      
T Consensus       162 ~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~--~~~~~~~~------  228 (335)
T d2ozaa1         162 KETTSHN-----SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA--ISPGMKTR------  228 (335)
T ss_dssp             EECCCCC-----CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC----------C------
T ss_pred             eeccCCC-----ccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHH--HHHHHHHH------
Confidence            8654322     2334678999999999999999999999999999999999999996432211  10000000      


Q ss_pred             HHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          263 DIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       263 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                           .......            ............+.+|+.+||+.||++|||+.|+++
T Consensus       229 -----i~~~~~~------------~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         229 -----IRMGQYE------------FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             -----CCSCSSS------------CCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             -----HhcCCCC------------CCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence                 0000000            000011134456789999999999999999999987

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-43  Score=317.80  Aligned_cols=238  Identities=19%  Similarity=0.240  Sum_probs=172.1

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH---------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF---------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l---------------  134 (356)
                      ++|++++.||+|+||+||+|++..+++.||||+++...  .....++.+|+.+|+.++||||+++               
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            57999999999999999999999999999999997543  2345788999999999999999987               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCCCCC
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVSNPT  192 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  192 (356)
                                            ..++.|++.||+|||+++   |+||||||+|||++.++.+||+|||.++.......  
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~---IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~--  156 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR--  156 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSCCS--
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHhhcCC---EeeecccCcccccccCCceeeeecchhhcccCCCc--
Confidence                                  568999999999999999   99999999999999999999999999987644322  


Q ss_pred             ccCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH--Hhhhhh
Q 039228          193 QSSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD--IVNLVL  269 (356)
Q Consensus       193 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l  269 (356)
                        ......++..|+|||.+.+.. ++.++|||||||++|||++|+.||.........+........+.....  ......
T Consensus       157 --~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (292)
T d1unla_         157 --CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP  234 (292)
T ss_dssp             --CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred             --cceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcc
Confidence              223345678899999987665 689999999999999999999997532222222222222222111000  000000


Q ss_pred             -ccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          270 -LNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       270 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       .........      ..............+.+|+.+||+.||.+|||++||++
T Consensus       235 ~~~~~~~~~~------~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         235 DYKPYPMYPA------TTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             TCCCCCCCCT------TCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccccccccc------cchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             000000000      00000011122335678999999999999999999875

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.9e-42  Score=313.40  Aligned_cols=231  Identities=16%  Similarity=0.162  Sum_probs=177.4

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCC-CChHHH---------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICH-RNLVRF---------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l---------------  134 (356)
                      .++|++.+.||+|+||+||+|++..+++.||||+++...  ....+.+|++.++.++| +|++.+               
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme   81 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   81 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence            467999999999999999999999999999999986543  23456788999999876 777765               


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCC-----CCceEEccccccccccc
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDN-----DLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~-----~~~~kl~Dfg~a~~~~~  187 (356)
                                            ..++.|++.||.|||+.+   ||||||||+|||++.     ++.+||+|||+|+....
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~g---iiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~  158 (293)
T d1csna_          82 LLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  158 (293)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             ecCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCC---ceeccCCccceeecCcccccCCceEEcccceeEEccc
Confidence                                  568999999999999999   999999999999974     57899999999987654


Q ss_pred             CCCC---CccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          188 VSNP---TQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       188 ~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ....   .........||+.|+|||.+.+..++.++|||||||++|||+||..||......... ....         .+
T Consensus       159 ~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~-~~~~---------~i  228 (293)
T d1csna_         159 PVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNK-QKYE---------RI  228 (293)
T ss_dssp             TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHH-HHHH---------HH
T ss_pred             CccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHH-HHHH---------HH
Confidence            3221   122344578999999999999999999999999999999999999999754332211 1100         00


Q ss_pred             hhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHHHHHhhhhh
Q 039228          265 VNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHDLQSVNNIL  331 (356)
Q Consensus       265 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~L~~i~~~~  331 (356)
                      .+........               .....++..+.+++..|++.+|++||+++.+.+.|+++.+..
T Consensus       229 ~~~~~~~~~~---------------~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         229 GEKKQSTPLR---------------ELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             HHHHHHSCHH---------------HHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             HhccCCCChH---------------HhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHc
Confidence            0000000000               000123456889999999999999999999999999887654

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.5e-42  Score=318.87  Aligned_cols=240  Identities=20%  Similarity=0.241  Sum_probs=170.0

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC-CCChHHH----------------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC-HRNLVRF----------------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l----------------  134 (356)
                      ++|++++.||+|+||+||+|++..+++.||||+++..   ..+++.+|+.+|+.++ ||||+++                
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            5799999999999999999999999999999998743   3467889999999996 9999987                


Q ss_pred             --------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCC-CceEEcccccccccccCCCCCc
Q 039228          135 --------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDND-LFAHIGDFELARFRQEVSNPTQ  193 (356)
Q Consensus       135 --------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~-~~~kl~Dfg~a~~~~~~~~~~~  193 (356)
                                          ..++.||+.||.|||+++   |+||||||+|||++.+ +.+||+|||+|+......    
T Consensus       112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~g---IvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~----  184 (328)
T d3bqca1         112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ----  184 (328)
T ss_dssp             ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC----
T ss_pred             eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcc---cccccccccceEEcCCCCeeeecccccceeccCCC----
Confidence                                568999999999999999   9999999999999865 469999999998664332    


Q ss_pred             cCCCCccccccccchhhhcCC-CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHHhhhhhc--
Q 039228          194 SSSNGVRRTIGYTALDYDLGS-EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDIVNLVLL--  270 (356)
Q Consensus       194 ~~~~~~~gt~~y~aPE~~~~~-~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  270 (356)
                       ......+|+.|+|||.+.+. .++.++||||+||++|+|++|+.||.............................-.  
T Consensus       185 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~  263 (328)
T d3bqca1         185 -EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIEL  263 (328)
T ss_dssp             -CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCC
T ss_pred             -cccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhccccc
Confidence             23346789999999998765 47999999999999999999999996433221111111111111111111111000  


Q ss_pred             -ccccccccc--ccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          271 -NDNKVLAGT--NSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       271 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                       .........  ...................+.+|+.+||..||.+|||++|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         264 DPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             CGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence             000000000  0000000000011123345789999999999999999999976

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-42  Score=320.29  Aligned_cols=237  Identities=19%  Similarity=0.157  Sum_probs=169.0

Q ss_pred             CCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChHHH------------------
Q 039228           73 GFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLVRF------------------  134 (356)
Q Consensus        73 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l------------------  134 (356)
                      +|+.+++||+|+||+||+|++..+++.||||++......    ..+|+.+|++++||||+++                  
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS----CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH----HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            588999999999999999999999999999999754322    2469999999999999986                  


Q ss_pred             ----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCC-ceEEccccccccc
Q 039228          135 ----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDL-FAHIGDFELARFR  185 (356)
Q Consensus       135 ----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~-~~kl~Dfg~a~~~  185 (356)
                                                  ..++.||+.||+|||+++   |+||||||+|||++.++ .+||+|||+++..
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~---IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTT---EECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcC---CcccCCCcceEEEecCCCceeEecccchhhc
Confidence                                        347889999999999999   99999999999999765 8999999999865


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcC-CCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHHH
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLG-SEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMDI  264 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~  264 (356)
                      ....     ......||..|+|||.+.+ ..++.++||||+||++|||++|+.||...... ..+..............+
T Consensus       174 ~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~-~~l~~i~~~~g~~~~~~~  247 (350)
T d1q5ka_         174 VRGE-----PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKVLGTPTREQI  247 (350)
T ss_dssp             CTTS-----CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCCCCHHHH
T ss_pred             cCCc-----ccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHH-HHHHHHHHHhCCChHHhh
Confidence            4322     2234678999999998765 56899999999999999999999999743221 112222222111111111


Q ss_pred             hhh--h-hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH--HHHhh
Q 039228          265 VNL--V-LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD--LQSVN  328 (356)
Q Consensus       265 ~~~--~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~--L~~i~  328 (356)
                      ...  . .......  .....+.....    ......+.+|+.+||..||++|||+.|+++.  ++++.
T Consensus       248 ~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         248 REMNPNYTEFKFPQ--IKAHPWTKVFR----PRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             HHHCC---CCCCCC--CCCCCGGGTSC----TTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             hhhccchhhccccc--cccCchhhhcc----cCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence            100  0 0000000  00000000000    1233357899999999999999999999863  44443

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-42  Score=320.23  Aligned_cols=244  Identities=20%  Similarity=0.132  Sum_probs=167.6

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccC--ccchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQC--QGASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++++.||+|+||+||+|++..+|+.||||+++...  ....+++.+|+.+|++++||||+++              
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCc
Confidence            367999999999999999999999999999999997543  3334578899999999999999986              


Q ss_pred             --------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccC
Q 039228          135 --------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEV  188 (356)
Q Consensus       135 --------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~  188 (356)
                                                ..++.|++.||.|||+.|   |+||||||+|||++.++.++++|||+++.....
T Consensus        96 ~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~g---iiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~  172 (355)
T d2b1pa1          96 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS  172 (355)
T ss_dssp             EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred             eeEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcc---cccccCCccccccccccceeeechhhhhccccc
Confidence                                      458999999999999999   999999999999999999999999998765432


Q ss_pred             CCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCC----------
Q 039228          189 SNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFP----------  258 (356)
Q Consensus       189 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~----------  258 (356)
                           .......+|+.|+|||++.+..++.++||||+||++|+|++|+.||...... ............          
T Consensus       173 -----~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~-~~~~~i~~~~~~~~~~~~~~~~  246 (355)
T d2b1pa1         173 -----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQLGTPCPEFMKKLQ  246 (355)
T ss_dssp             -------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHTTSC
T ss_pred             -----cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHH-HHHHHHHHhccCCCHHHHHHhh
Confidence                 2334467899999999999999999999999999999999999999743211 111111111111          


Q ss_pred             CchHHHhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHHH
Q 039228          259 NRVMDIVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVHD  323 (356)
Q Consensus       259 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~~  323 (356)
                      ........................................+.+|+.+||..||++|||++||++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         247 PTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             HHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence            01111111110000000000000000000111223456678899999999999999999999854

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-42  Score=321.25  Aligned_cols=230  Identities=23%  Similarity=0.240  Sum_probs=167.0

Q ss_pred             cCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCc--cchHHHHHHHHHHhhcCCCChHHH--------------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ--GASKSFMAECKALKNICHRNLVRF--------------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l--------------  134 (356)
                      .++|++++.||+|+||+||+|++..+|+.||||+++....  ...+++.+|+.+|++++|||||++              
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            5789999999999999999999999999999999975432  334678899999999999999976              


Q ss_pred             ---------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccccc
Q 039228          135 ---------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQE  187 (356)
Q Consensus       135 ---------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  187 (356)
                                                 ..++.||+.||+|||++|   |+||||||+|||++.++.+|++|||++.....
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~g---iiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCC---CcccccCCccccccccccccccccchhcccCc
Confidence                                       458899999999999999   99999999999999999999999999975432


Q ss_pred             CCCCCccCCCCccccccccchhhhcCCC-CCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCC--chHH-
Q 039228          188 VSNPTQSSSNGVRRTIGYTALDYDLGSE-VSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPN--RVMD-  263 (356)
Q Consensus       188 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~-  263 (356)
                             ......|+..|+|||...+.. ++.++|||||||++|+|++|+.||....... ............  .... 
T Consensus       174 -------~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~-~~~~i~~~~~~~~~~~~~~  245 (348)
T d2gfsa1         174 -------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID-QLKLILRLVGTPGAELLKK  245 (348)
T ss_dssp             -------GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCHHHHTT
T ss_pred             -------ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCChHHhhh
Confidence                   233467899999999877654 6889999999999999999999997432111 111111111110  0000 


Q ss_pred             -------HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCChHHHHH
Q 039228          264 -------IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMNVPNAVH  322 (356)
Q Consensus       264 -------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs~~~vl~  322 (356)
                             .....+.....           .............+.+|+.+||..||.+|||+.|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         246 ISSESARNYIQSLTQMPK-----------MNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             CCCHHHHHHHTTSCCCCC-----------CCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccchhhhhhhhhcccCCC-----------cchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence                   00000000000           0000000122345689999999999999999999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-42  Score=314.09  Aligned_cols=217  Identities=21%  Similarity=0.247  Sum_probs=166.2

Q ss_pred             cCCCCccccceecCceEEEEEEE---CCCCeEEEEEEeeccC----ccchHHHHHHHHHHhhcCC-CChHHH--------
Q 039228           71 TDGFPLINLIGVGSFDAVYQGVF---DLNRAVVAIKVLSIQC----QGASKSFMAECKALKNICH-RNLVRF--------  134 (356)
Q Consensus        71 ~~~~~~~~~lg~G~~g~Vy~~~~---~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h-~niv~l--------  134 (356)
                      .++|++++.||+|+||+||+|+.   +.+|+.||||+++...    ....+.+.+|+.+|++++| |||+++        
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~  102 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  102 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC
Confidence            36799999999999999999987   4468999999986432    2335678899999999987 799987        


Q ss_pred             -----------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEccccccccc
Q 039228          135 -----------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFR  185 (356)
Q Consensus       135 -----------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~  185 (356)
                                                   ..++.||+.||.|||+.+   |+||||||+|||++.++.+||+|||+++.+
T Consensus       103 ~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~---ivHrDiKp~Nill~~~~~vkL~DFG~a~~~  179 (322)
T d1vzoa_         103 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLG---IIYRDIKLENILLDSNGHVVLTDFGLSKEF  179 (322)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTT---CCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred             ceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC---EEeccCCccceeecCCCCEEEeeccchhhh
Confidence                                         457889999999999999   999999999999999999999999999866


Q ss_pred             ccCCCCCccCCCCccccccccchhhhcCC--CCCCccchHhHHHHHHHHHcCCCCCCccccCCccHHHHHHHhCCCchHH
Q 039228          186 QEVSNPTQSSSNGVRRTIGYTALDYDLGS--EVSTNGDAYNYGILLLEMVTRRKPIDFMFEGDLNLHNFARMAFPNRVMD  263 (356)
Q Consensus       186 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~  263 (356)
                      ....   ........|++.|++||.+.+.  .++.++|||||||++|+|++|+.||........ .......        
T Consensus       180 ~~~~---~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~-~~~i~~~--------  247 (322)
T d1vzoa_         180 VADE---TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS-QAEISRR--------  247 (322)
T ss_dssp             CGGG---GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC-HHHHHHH--------
T ss_pred             cccc---cccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHh--------
Confidence            4332   2233456789999999998764  467899999999999999999999975433321 1111111        


Q ss_pred             HhhhhhccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC-----hHHHHH
Q 039228          264 IVNLVLLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN-----VPNAVH  322 (356)
Q Consensus       264 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs-----~~~vl~  322 (356)
                          .......                .+......+.+++.+||++||++|||     ++|+++
T Consensus       248 ----~~~~~~~----------------~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         248 ----ILKSEPP----------------YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             ----HHHCCCC----------------CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             ----cccCCCC----------------CcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence                1000000                00123446789999999999999995     677764

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-38  Score=298.06  Aligned_cols=240  Identities=18%  Similarity=0.163  Sum_probs=165.7

Q ss_pred             CCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcCCCChH-----------HH------
Q 039228           72 DGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNICHRNLV-----------RF------  134 (356)
Q Consensus        72 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv-----------~l------  134 (356)
                      ++|++++.||+|+||+||+|++..+|+.||||+++... ...+.+.+|+.+++.++|+|++           ++      
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            35999999999999999999999999999999997542 2346778899999998776544           33      


Q ss_pred             ------------------------------------HHHHHHHHHHHHHHhh-cCCCcEEecCCCCCCeEeCCCC-----
Q 039228          135 ------------------------------------ISIAIDVASALDYLHH-HCQELILHCDPKPSNVLLDNDL-----  172 (356)
Q Consensus       135 ------------------------------------~~i~~~i~~aL~~LH~-~~~~~iiH~Dlkp~NIll~~~~-----  172 (356)
                                                          ..++.||+.||.|||+ .+   |+||||||+|||++.++     
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~---IvHrDlKp~NIll~~~~~~~~~  168 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCG---IIHTDIKPENVLMEIVDSPENL  168 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTC---EECSCCSGGGEEEEEEETTTTE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcC---cccccCChhHeeeeccCccccc
Confidence                                                4488999999999998 77   99999999999998654     


Q ss_pred             -ceEEcccccccccccCCCCCccCCCCccccccccchhhhcCCCCCCccchHhHHHHHHHHHcCCCCCCccccCC-c---
Q 039228          173 -FAHIGDFELARFRQEVSNPTQSSSNGVRRTIGYTALDYDLGSEVSTNGDAYNYGILLLEMVTRRKPIDFMFEGD-L---  247 (356)
Q Consensus       173 -~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~sDiwSlG~~l~elltg~~Pf~~~~~~~-~---  247 (356)
                       .++++|||.+.....       ......||+.|+|||++.+..++.++||||+||++++|++|+.||....... .   
T Consensus       169 ~~~kl~dfg~s~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~  241 (362)
T d1q8ya_         169 IQIKIADLGNACWYDE-------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD  241 (362)
T ss_dssp             EEEEECCCTTCEETTB-------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHH
T ss_pred             ceeeEeeccccccccc-------ccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchh
Confidence             389999999975432       2234678999999999999999999999999999999999999997532211 0   


Q ss_pred             -cHHHHHHHhCCCchHHHhhh-----h-----hccccccccccccchhhhhchhhHHHHHHHHHHHHHhhcCCCcCCCCC
Q 039228          248 -NLHNFARMAFPNRVMDIVNL-----V-----LLNDNKVLAGTNSNMLRKTKMNSRLECLIFMVRIGAACSMGSSQDRMN  316 (356)
Q Consensus       248 -~~~~~~~~~~~~~~~~~~~~-----~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~dP~~RPs  316 (356)
                       .+...............-..     .     ..............-...............+.+|+.+||..||.+|||
T Consensus       242 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpt  321 (362)
T d1q8ya_         242 DHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD  321 (362)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC
T ss_pred             HHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcC
Confidence             11111111111000000000     0     000000000000000000111122356668899999999999999999


Q ss_pred             hHHHHH
Q 039228          317 VPNAVH  322 (356)
Q Consensus       317 ~~~vl~  322 (356)
                      ++|+++
T Consensus       322 a~e~L~  327 (362)
T d1q8ya_         322 AGGLVN  327 (362)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999976

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.86  E-value=4e-22  Score=168.41  Aligned_cols=138  Identities=18%  Similarity=0.108  Sum_probs=100.8

Q ss_pred             CCccccceecCceEEEEEEECCCCeEEEEEEeeccCc------------------cchHHHHHHHHHHhhcCCCChHHH-
Q 039228           74 FPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQ------------------GASKSFMAECKALKNICHRNLVRF-  134 (356)
Q Consensus        74 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~niv~l-  134 (356)
                      +.+.+.||+|+||+||+|++. +|+.||||+++....                  ........|...+.++.|++++.. 
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~   80 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVY   80 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEE
Confidence            356789999999999999986 578999998753210                  011234568888999999887753 


Q ss_pred             -------------------------HHHHHHHHHHHHHHhhcCCCcEEecCCCCCCeEeCCCCceEEcccccccccccCC
Q 039228          135 -------------------------ISIAIDVASALDYLHHHCQELILHCDPKPSNVLLDNDLFAHIGDFELARFRQEVS  189 (356)
Q Consensus       135 -------------------------~~i~~~i~~aL~~LH~~~~~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  189 (356)
                                               ..++.|++.+|.|||+++   |+||||||+|||+++++ ++|+|||.|.......
T Consensus        81 ~~~~~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~g---iiHrDiKP~NILv~~~~-~~liDFG~a~~~~~~~  156 (191)
T d1zara2          81 AWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEEG  156 (191)
T ss_dssp             EEETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTT---EECSCCSTTSEEEETTE-EEECCCTTCEETTSTT
T ss_pred             EecCCEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhCC---EEEccCChhheeeeCCC-EEEEECCCcccCCCCC
Confidence                                     568999999999999999   99999999999999655 8899999996432111


Q ss_pred             CCCccCCCCccccccccc------hhhhcCCCCCCccchHhHHHHH
Q 039228          190 NPTQSSSNGVRRTIGYTA------LDYDLGSEVSTNGDAYNYGILL  229 (356)
Q Consensus       190 ~~~~~~~~~~~gt~~y~a------PE~~~~~~~~~~sDiwSlG~~l  229 (356)
                                  ...|..      .+.+ ...|+.++|+||+.--+
T Consensus       157 ------------~~~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         157 ------------WREILERDVRNIITYF-SRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             ------------HHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_pred             ------------cHHHHHHHHHHHHHHH-cCCCCCcccHHHHHHHH
Confidence                        001111      1122 35678899999976433

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.45  E-value=0.00023  Score=60.36  Aligned_cols=116  Identities=16%  Similarity=0.106  Sum_probs=76.5

Q ss_pred             HHHhhcCCCCccccceecCceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC----CCChHHH-------
Q 039228           66 SLLKATDGFPLINLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC----HRNLVRF-------  134 (356)
Q Consensus        66 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~----h~niv~l-------  134 (356)
                      ++....+.|.+.+..+-++.+.||+...  +++.+++|+...........+.+|...+..+.    -|-++..       
T Consensus         8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~--~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~   85 (263)
T d1j7la_           8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHTTSEEEECSCCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHhhhceEEEEcCCCCCCCcEEEEEe--CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCce
Confidence            4445566787776655555678998763  45677889876554444445677888776653    2333211       


Q ss_pred             ----------------------HHHHHHHHHHHHHHhhcCC---------------------------------------
Q 039228          135 ----------------------ISIAIDVASALDYLHHHCQ---------------------------------------  153 (356)
Q Consensus       135 ----------------------~~i~~~i~~aL~~LH~~~~---------------------------------------  153 (356)
                                            -.++.+++..|..||+...                                       
T Consensus        86 ~lv~~~l~G~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (263)
T d1j7la_          86 NLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFK  165 (263)
T ss_dssp             EEEEECCSSEEHHHHTTTCSCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCS
T ss_pred             EEEEEecccccccccccccccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccch
Confidence                                  2355566666777765310                                       


Q ss_pred             -----------------CcEEecCCCCCCeEeCCCCceEEccccccc
Q 039228          154 -----------------ELILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       154 -----------------~~iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                                       ..++|+|+.|.||++++++.+-|.||+.+.
T Consensus       166 ~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         166 DPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             SHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                             017899999999999987777799999885

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.72  E-value=0.0011  Score=57.67  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      +||+|+.++||+++.+...-|.||+.+.
T Consensus       185 iIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         185 VIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCcchhhhhcccccceeEecccccc
Confidence            9999999999999988877899999884

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=95.98  E-value=0.009  Score=53.59  Aligned_cols=50  Identities=18%  Similarity=0.052  Sum_probs=31.8

Q ss_pred             cccceecCceEEEEEEECCCCeEEEEEEeecc-------CccchHHHHHHHHHHhhc
Q 039228           77 INLIGVGSFDAVYQGVFDLNRAVVAIKVLSIQ-------CQGASKSFMAECKALKNI  126 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~-------~~~~~~~~~~E~~~l~~l  126 (356)
                      .+.||.|....||+.....+++.|+||.-...       ......+...|...|+.+
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~   87 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQ   87 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHh
Confidence            44689999999999988777788999975311       112334556677777655

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=95.89  E-value=0.0044  Score=51.70  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             EEecCCCCCCeEeCCCCceEEccccccc
Q 039228          156 ILHCDPKPSNVLLDNDLFAHIGDFELAR  183 (356)
Q Consensus       156 iiH~Dlkp~NIll~~~~~~kl~Dfg~a~  183 (356)
                      ++|+|+.|.||+++++..+-|+||+.+.
T Consensus       177 liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         177 VTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             EEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            7999999999999987777899999875

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0053  Score=53.63  Aligned_cols=41  Identities=15%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             ceEEEEEEECCCCeEEEEEEeeccCccchHHHHHHHHHHhhcC
Q 039228           85 FDAVYQGVFDLNRAVVAIKVLSIQCQGASKSFMAECKALKNIC  127 (356)
Q Consensus        85 ~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  127 (356)
                      -..||++... +|..|++|+.... ....+++..|...+..|.
T Consensus        35 EN~vy~v~~~-dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~   75 (325)
T d1zyla1          35 ENRVYQFQDE-DRRRFVVKFYRPE-RWTADQILEEHQFALQLV   75 (325)
T ss_dssp             SSEEEEECCT-TCCCEEEEEECTT-TSCHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEcC-CCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHH
Confidence            4689999875 4588999997643 223466778888877764

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.61  E-value=0.093  Score=46.58  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=32.3

Q ss_pred             cccceecCceEEEEEEECCC-------CeEEEEEEeeccCccchHHHHHHHHHHhhcC
Q 039228           77 INLIGVGSFDAVYQGVFDLN-------RAVVAIKVLSIQCQGASKSFMAECKALKNIC  127 (356)
Q Consensus        77 ~~~lg~G~~g~Vy~~~~~~~-------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~  127 (356)
                      ++.|+.|-...+|++.....       ...|.+++.. .. ...-...+|..+++.+.
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g-~~-~~~idr~~E~~i~~~ls  102 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYF-NP-ETESHLVAESVIFTLLS  102 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEEC-SC-CCHHHHHHHHHHHHHHH
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecC-Cc-chhhHHHHHHHHHHHHH
Confidence            35788899999999987542       3567777765 22 22234557877777664