Citrus Sinensis ID: 039252

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKMV
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masssssinmiphtkydvflsfrgkdvrHNFISHLNAALCRKKIVtfnddklnrgdeispslssaiegskISIVIFSKGYASSRWCLNELVKILEsknkygqivvpvfylvdpsdvrnqtgtfgdsFSKLEERFKEKMV
Flexible Loop (DISEMBL)
masssssinmiphTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVtfnddklnrgdeispslssaiegsKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLvdpsdvrnqtgtfgdsfskleerfkekmv
Low Complexity Region (SEG)
MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKMV
Disordered region (IsUnstruct)
*********MIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKL*************IEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPS*************************
Disordered Region (DISOPRED)
***************YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEER******
Disordered Region (DISEMBL)
********NMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKMV
Disordered Region (DISPRO)
***********PHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
O82500	1095	Putative disease resistan	no	no	0.920	0.116	0.543	1e-32
Q40392	1144	TMV resistance protein N	N/A	no	0.870	0.105	0.549	5e-32
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.913	0.097	0.525	1e-29
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.892	0.301	0.444	8e-23
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.928	0.329	0.465	5e-21
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.942	0.370	0.406	1e-20
Q9SYC9	571	Vesicle-associated protei	no	no	0.956	0.232	0.365	1e-18
Q9FL92	1372	Probable WRKY transcripti	no	no	0.762	0.077	0.321	2e-07
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.611	0.044	0.306	3e-06

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 93/138 (67%), Gaps = 10/138 (7%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
           MASSSS+       +YDVF SFRG+DVR+NF+SHL      K IVTF DD + R   I  
Sbjct: 1   MASSSSN-----SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L +AI  SKIS+V+FS+ YASS WCL+EL++I++ K + G  V+PVFY VDPSD+R QT
Sbjct: 56  ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

Query: 121 GTFGDSF-----SKLEER 133
           G FG SF      K EER
Sbjct: 116 GKFGMSFLETCCGKTEER 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 84/122 (68%), Gaps = 1/122 (0%)

Query: 16  YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIV 74
           YDVFLSFRG+D R  F SHL   L  K I TF DDK L  G  I   L  AIE S+ +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           +FS+ YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VRNQ  +F  +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 135 KE 136
           K+
Sbjct: 132 KD 133

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 91/137 (66%), Gaps = 10/137 (7%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
           +ASSS S       +YDVF SFRG+DVR +F+SHL   L R K +TF DD++ R   I P
Sbjct: 3   IASSSGS------RRYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGP 55

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L SAI+ S+I+IVIFSK YASS WCLNELV+I +      Q+V+P+F+ VD S+V+ QT
Sbjct: 56  ELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQT 115

Query: 121 GTFGDSFSKLEERFKEK 137
           G FG  F   EE  K K
Sbjct: 116 GEFGKVF---EETCKAK 129

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 84/126 (66%), Gaps = 2/126 (1%)

Query: 10  MIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGS 69
           +IP T   VF++FRGKD+R  F+S L  AL ++KI  F D++  RG  +  SL   I  S
Sbjct: 17  LIP-TGPQVFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGES 74

Query: 70  KISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSK 129
           KI++VIFS+GY  S WC++ELVKI E  ++   I++P+FY +D   V++ TG FGD+F  
Sbjct: 75  KIALVIFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWD 134

Query: 130 LEERFK 135
           L ++++
Sbjct: 135 LVDKYQ 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
           MASSSS +   P T   VF+ FRG DVR +FIS L  AL    I  F D+    G E++ 
Sbjct: 1   MASSSSVVKPTP-TGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA- 58

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L + IE S++++VIFS  +  S  CLNEL KI E K++   IV+P+FY V PS V+   
Sbjct: 59  NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLE 118

Query: 121 GTFGDSFSKLE 131
           G FGD+F  LE
Sbjct: 119 GKFGDNFRALE 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 2/133 (1%)

Query: 3   SSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSL 62
           ++SSS+   P T   VF++FRGKD+R+ F+S L  A+    I  F D     G ++  +L
Sbjct: 2   AASSSVRPTP-TGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-NL 59

Query: 63  SSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGT 122
              I+ S++++VIFSK Y SS WCL+EL +I +  N+ G   +P+FY + PS V    G 
Sbjct: 60  FVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Query: 123 FGDSFSKLEERFK 135
           FGD+F  L+E++K
Sbjct: 120 FGDTFRVLKEKYK 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 1/134 (0%)

Query: 2   ASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPS 61
           A+SS+  + I   +Y VF++FRG ++R++F+  L  A+  +KI  F D+   RG  ++  
Sbjct: 344 AASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-Y 402

Query: 62  LSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTG 121
           L   IE S++++ IFS+ Y  S WCL+ELVK+ E   +   +VVPVFY ++ +  +   G
Sbjct: 403 LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMG 462

Query: 122 TFGDSFSKLEERFK 135
            FGD+   LE  ++
Sbjct: 463 AFGDNLRNLEWEYR 476

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 25  KDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSR 84
           ++VR++F+SHL+ AL RK +   ND  ++  D +S    S +E +++S++I       S 
Sbjct: 14  EEVRYSFVSHLSKALQRKGV---NDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVS- 69

Query: 85  WCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKE 136
             L++LVK+L+ +    Q+VVPV Y V  S+    +      FS +    KE
Sbjct: 70  --LDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFSSVHHSRKE 119

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 16/101 (15%)

Query: 16  YDVFLSFRGKDV-RHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIV 74
           YDV + +   D+   +FISHL A+LCR+ I  +  +K N  D        A+   ++ I+
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNEVD--------ALPKCRVLII 717

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSD 115
           + +  Y  S      L+ ILE ++   ++V P+FY + P D
Sbjct: 718 VLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYD 753

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.964	0.093	0.661	7e-44
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.892	0.084	0.677	2e-43
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.964	0.106	0.669	6e-43
224145021	1561	tir-nbs-lrr resistance protein [Populus	0.971	0.086	0.652	2e-42
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.913	0.112	0.661	7e-42
255564962	1091	TMV resistance protein N, putative [Rici	0.992	0.126	0.611	4e-41
224126837	208	predicted protein [Populus trichocarpa]	0.928	0.620	0.648	4e-40
225460020	1156	PREDICTED: TMV resistance protein N-like	0.971	0.116	0.591	1e-39
224165730	162	predicted protein [Populus trichocarpa]	0.971	0.833	0.621	1e-39
356495059	1131	PREDICTED: putative disease resistance p	0.964	0.118	0.544	1e-39

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 92/139 (66%), Positives = 110/139 (79%), Gaps = 5/139 (3%)

Query: 1   MASSSSSINMIPHT-KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEIS 59
           MASSS+    + H  KYDVFLSFRGKD R+NF SHL  ALCRKKI TF DD+L RG EI+
Sbjct: 1   MASSSA----VAHKWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEIT 56

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P+L   IE S+IS+VIFSK YASS WC++ELVKILE K  YGQIV+PVFY V+PSDV  Q
Sbjct: 57  PALLKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQ 116

Query: 120 TGTFGDSFSKLEERFKEKM 138
           TG+FG++F++LE+ FK KM
Sbjct: 117 TGSFGNAFAELEKNFKGKM 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/124 (67%), Positives = 102/124 (82%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIV 74
           KYDVFLSFRGKD R NF+SHL  ALCRK+I TF DDKL RG+EI+ +L   IE S+IS++
Sbjct: 12  KYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVI 71

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           IFS+ YASS WC++ELVKILE K  YGQIV+PVFY VDPSDV  QTG+FG++F++LE  F
Sbjct: 72  IFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNF 131

Query: 135 KEKM 138
           K+KM
Sbjct: 132 KQKM 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 108/139 (77%), Gaps = 5/139 (3%)

Query: 1   MASSSSSINMIPHT-KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEIS 59
           MASSSS    + H  KYDVFLSFRG+D R+NF SHL  ALCRKKI TF DD L RG+EI+
Sbjct: 1   MASSSS----VAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEIT 56

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P+L   IE S+IS+VIFSK YASS WC++ELVKILE K   GQIV+PVFY VDPSDV  Q
Sbjct: 57  PALLKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQ 116

Query: 120 TGTFGDSFSKLEERFKEKM 138
           TG+FG++FS+LE  FK KM
Sbjct: 117 TGSFGNAFSELENIFKGKM 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145021|ref|XP_002325498.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862373|gb|EEE99879.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 108/138 (78%), Gaps = 3/138 (2%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
           MASSS+   +    KYDVFLSFRGKD R+NF SHL   L R+KI TF DD+L RG+EI+P
Sbjct: 1   MASSSA---VARKWKYDVFLSFRGKDTRNNFTSHLCKDLRRQKIKTFIDDRLERGEEITP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L   IE S++SIVIFS+ YASS WCL+ELVKILE K  YGQIV+PVFY VDPSDV  QT
Sbjct: 58  ALLKTIEESRVSIVIFSENYASSPWCLDELVKILECKETYGQIVLPVFYHVDPSDVDEQT 117

Query: 121 GTFGDSFSKLEERFKEKM 138
           G+FG++FS+LE+ FK KM
Sbjct: 118 GSFGNAFSELEKNFKGKM 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 100/127 (78%)

Query: 12  PHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKI 71
           P  KYDVFLSFRG+D R  F+SHL AAL RK+I TF D KLNRG+EISPSL  AIE SK+
Sbjct: 11  PQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKL 70

Query: 72  SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE 131
           S+V+FS  YASS+WCL EL KILE K   GQ+V+PVFY VDPS VRNQTG+F D+F++ +
Sbjct: 71  SVVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHD 130

Query: 132 ERFKEKM 138
           +  KEKM
Sbjct: 131 QLLKEKM 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564962|ref|XP_002523474.1| TMV resistance protein N, putative [Ricinus communis] gi|223537302|gb|EEF38933.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 104/139 (74%), Gaps = 1/139 (0%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEIS 59
           M   +SS N+ P T YDVFLSFRG D RHN ISHL AAL RK + TF DD  L+RG+EIS
Sbjct: 1   MPPPTSSSNVPPKTSYDVFLSFRGADTRHNLISHLYAALSRKHVTTFIDDHGLDRGEEIS 60

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P+L  AIE SKIS++IFS+ YASS+WCL+ELVKI+E      + V+PVFY VDPSDVR Q
Sbjct: 61  PTLLKAIEESKISVIIFSENYASSKWCLDELVKIMECMKTMSRNVLPVFYHVDPSDVRKQ 120

Query: 120 TGTFGDSFSKLEERFKEKM 138
           TG+FG +F  ++E+FK  M
Sbjct: 121 TGSFGQAFGVVKEKFKGSM 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126837|ref|XP_002329485.1| predicted protein [Populus trichocarpa] gi|222870165|gb|EEF07296.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 11  IPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTF-NDDKLNRGDEISPSLSSAIEGS 69
           IP   YDVFLSFRG+D R  F  HL AAL +  I TF +DD+L RG+EIS  L  AI  S
Sbjct: 38  IPEGAYDVFLSFRGEDTRKTFTDHLYAALDQAGIHTFRDDDELPRGEEISEHLLKAIRES 97

Query: 70  KISIVIFSKGYASSRWCLNELVKILESK-NKYGQIVVPVFYLVDPSDVRNQTGTFGDSFS 128
           KISIV+FSKGYASSRWCLNELV+IL+ K  K GQIV+P+FY +DPSDVR QTG+F ++F 
Sbjct: 98  KISIVVFSKGYASSRWCLNELVEILKCKRKKTGQIVLPIFYDIDPSDVRKQTGSFAEAFD 157

Query: 129 KLEERFKEKMV 139
           K EERF+EK+V
Sbjct: 158 KHEERFEEKLV 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460020|ref|XP_002269704.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 101/137 (73%), Gaps = 2/137 (1%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
           MAS  SS    P   YDVFLSFRG+D R+NF  HL  AL ++ I TF DDKL RG+EI+P
Sbjct: 8   MASDYSS--STPRCTYDVFLSFRGEDTRNNFTDHLYTALVQRGINTFRDDKLRRGEEIAP 65

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L  AIE S+ SIV+FSK YA SRWCL+EL KI+E + +Y QIV+P+FY VDP+DVR QT
Sbjct: 66  ELLKAIEESRSSIVVFSKTYAHSRWCLDELAKIMECRREYRQIVLPIFYHVDPADVRKQT 125

Query: 121 GTFGDSFSKLEERFKEK 137
           G+FG++F+  EE +K K
Sbjct: 126 GSFGEAFTSYEENWKNK 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224165730|ref|XP_002338849.1| predicted protein [Populus trichocarpa] gi|222873666|gb|EEF10797.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/140 (62%), Positives = 102/140 (72%), Gaps = 5/140 (3%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
           MASSS++       KYDVFLSFRGKD R NF SHL  ALC K+I TF D+ L RG+EI P
Sbjct: 1   MASSSTTAQ---QWKYDVFLSFRGKDTRDNFTSHLYDALCHKQIKTFIDNDLERGEEIEP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVP--VFYLVDPSDVRN 118
           +L   IE S+IS+VIFSK YASS WC++ELVKILE K   GQIV+P   FY VDPSDV  
Sbjct: 58  TLLRTIEDSRISVVIFSKNYASSPWCVDELVKILECKRTCGQIVLPGFFFYHVDPSDVDE 117

Query: 119 QTGTFGDSFSKLEERFKEKM 138
           Q G+FG++F+KLE  FK KM
Sbjct: 118 QRGSFGNAFAKLERNFKWKM 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495059|ref|XP_003516398.1| PREDICTED: putative disease resistance protein At4g11170-like [Glycine max]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 104/134 (77%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
           +AS     + +P  KYDVF++FRG+D+RH+F+ +L  A  +K+I  F DDKL +GDEI P
Sbjct: 3   VASEQMPADSVPQIKYDVFVNFRGEDIRHSFLGYLTEAFYQKQINAFVDDKLEKGDEIWP 62

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           SL  AI+GS IS+ IFS+ Y SSRWCL+ELVKILE + KYGQIV+PVFY V+P+DVR+Q 
Sbjct: 63  SLVGAIQGSSISLTIFSENYTSSRWCLDELVKILECREKYGQIVIPVFYGVNPTDVRHQK 122

Query: 121 GTFGDSFSKLEERF 134
           G++G++ ++L +++
Sbjct: 123 GSYGEALAQLGKKY 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.920	0.408	0.519	6e-32
TAIR|locus:2130319	796	RLM3 "RESISTANCE TO LEPTOSPHAE	0.820	0.143	0.587	2.6e-30
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.884	0.115	0.536	1.3e-29
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.899	0.111	0.530	1.4e-29
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.949	0.115	0.540	1.4e-29
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.920	0.116	0.543	1.7e-29
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.956	0.091	0.569	2e-29
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.913	0.112	0.503	2.9e-29
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.863	0.436	0.553	1.2e-28
TAIR|locus:2146228	1245	AT5G18350 [Arabidopsis thalian	0.892	0.099	0.555	1.9e-28

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 67/129 (51%), Positives = 92/129 (71%)

Query:     8 INMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE 67
             +N  P  K+DVF+SFR KD R NF+SHL   L RK+I TF  D+L   +    SL  AIE
Sbjct:     1 MNSSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLK-AIE 59

Query:    68 GSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSF 127
              SKIS+++FS+ +  SRWCL+E+V IL+ K K+GQIV+PV Y VDP D+ NQTG+FGD+F
Sbjct:    60 VSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAF 119

Query:   128 SKLEERFKE 136
             +K  ++ ++
Sbjct:   120 AKRRDKAEQ 128

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2130319 RLM3 "RESISTANCE TO LEPTOSPHAERIA MACULANS 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 67/114 (58%), Positives = 84/114 (73%)

Query:    16 YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVI 75
             YDVF +FRG+DVRH+ +SHL   L RK I TFND+++ R  +I+P L  AIE S+IS+V+
Sbjct:     9 YDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLAIENSRISLVV 68

Query:    76 FSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSK 129
             FSK YASS WCL+ELVKI E   K  Q+V+P+FY VDPS VR QTG FG  F +
Sbjct:    69 FSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVFGE 122

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:2000071 "regulation of defense response by callose deposition" evidence=IMP

GO:0015979 "photosynthesis" evidence=RCA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 67/125 (53%), Positives = 87/125 (69%)

Query:     5 SSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSS 64
             SSS++ I   +Y VF SF G DVR  F+SHL++    K I TFND K++RG  I P L  
Sbjct:     4 SSSLSCIK--RYQVFSSFHGPDVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQ 61

Query:    65 AIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFG 124
              I  +++SIV+ SK YASS WCL+ELV+IL+ K   GQIV+ VFY VDPSDV+ Q+G FG
Sbjct:    62 GIREARVSIVVLSKKYASSSWCLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFG 121

Query:   125 DSFSK 129
             ++F K
Sbjct:   122 EAFEK 126

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 69/130 (53%), Positives = 92/130 (70%)

Query:     1 MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
             MASSSSS     +  YDVF SF G+DVR  F+SH    L RK I+TF D+++ R   I+P
Sbjct:     1 MASSSSSSR---NWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAP 57

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKY-GQIVVPVFYLVDPSDVRNQ 119
              L  AI+ S+I++++FSK YASS WCLNEL++I+   NKY GQ V+PVFY +DPS +R Q
Sbjct:    58 ELVEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRC-NKYLGQQVIPVFYYLDPSHLRKQ 116

Query:   120 TGTFGDSFSK 129
             +G FG++F K
Sbjct:   117 SGEFGEAFKK 126

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 340 (124.7 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 74/137 (54%), Positives = 91/137 (66%)

Query:     1 MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEIS 59
             MASSSSS        YDVFLSFRG+D R  F SHL   L  K I TF DDK L  G  I 
Sbjct:     1 MASSSSSSRW----SYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIP 56

Query:    60 PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
               L  AIE S+ +IV+FS+ YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VRNQ
Sbjct:    57 GELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQ 116

Query:   120 TGTFGDSFSKLEERFKE 136
               +F  +F + E ++K+
Sbjct:   117 KESFAKAFEEHETKYKD 133

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 1.7e-29, P = 1.7e-29
 Identities = 75/138 (54%), Positives = 93/138 (67%)

Query:     1 MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
             MASSSS+       +YDVF SFRG+DVR+NF+SHL      K IVTF DD + R   I  
Sbjct:     1 MASSSSN-----SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L +AI  SKIS+V+FS+ YASS WCL+EL++I++ K + G  V+PVFY VDPSD+R QT
Sbjct:    56 ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

Query:   121 GTFGDSF-----SKLEER 133
             G FG SF      K EER
Sbjct:   116 GKFGMSFLETCCGKTEER 133

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 2.0e-29, P = 2.0e-29
 Identities = 78/137 (56%), Positives = 91/137 (66%)

Query:     1 MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
             MA+SSSS       +YDVF SF G DVR  F+SHL  AL  K I TF D  + R   I+P
Sbjct:     1 MAASSSS----GRRRYDVFPSFSGVDVRKTFLSHLIEALDGKSINTFIDHGIERSRTIAP 56

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L SAI  ++ISIVIFSK YASS WCLNELV+I +  N  GQ+V+PVFY VDPS+VR QT
Sbjct:    57 ELISAIREARISIVIFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQT 116

Query:   121 GTFGDSFSKLEERFKEK 137
             G FG  F K  E  K+K
Sbjct:   117 GEFGKVFEKTCEVSKDK 133

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 2.9e-29, P = 2.9e-29
 Identities = 65/129 (50%), Positives = 90/129 (69%)

Query:     1 MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
             MASSSSS +   +  Y VF SF G+DVR+ F+SH    L RK I++F D+++ R   + P
Sbjct:     1 MASSSSSSSR--NWSYHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDP 58

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L   I  S+I++V+FSK YASS WCLNEL++I++ K ++GQ+V+P+FY +DPS VR QT
Sbjct:    59 ELKHGIRNSRIAVVVFSKTYASSSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSHVRKQT 118

Query:   121 GTFGDSFSK 129
             G FG  F K
Sbjct:   119 GDFGKIFEK 127

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 67/121 (55%), Positives = 80/121 (66%)

Query:    14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKIS 72
             TKYDVFLSFRG D R NFIS L   L R+KI TF DDK L  G  ISP L  AIE SK +
Sbjct:     7 TKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    73 IVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEE 132
             +V+ S  YA+S WCL+ELVKI++ +NK    V+P+FY VDP  +R Q G   + F K E 
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEA 126

Query:   133 R 133
             R
Sbjct:   127 R 127

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2146228 AT5G18350 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 70/126 (55%), Positives = 87/126 (69%)

Query:     4 SSSSINMIP-HT-KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPS 61
             +SSS++  P  T  + VFLSFRG+DVR  F+SH+     RK I  F D K+ RG  I P 
Sbjct:     6 ASSSLSSTPTRTWTHHVFLSFRGEDVRKGFLSHIQKEFERKGIFPFVDTKMKRGSSIGPV 65

Query:    62 LSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTG 121
             LS AI  SKI+IV+ SK YASS WCLNELV I++ + ++GQ V+ VFY VDPSDVR QTG
Sbjct:    66 LSDAIIVSKIAIVLLSKNYASSTWCLNELVNIMKCREEFGQTVMTVFYEVDPSDVRKQTG 125

Query:   122 TFGDSF 127
              FG +F
Sbjct:   126 DFGIAF 131

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-42
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-38
pfam01582	135	pfam01582, TIR, TIR domain	3e-38
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-14
pfam13676	102	pfam13676, TIR_2, TIR domain	5e-10

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  146 bits (371), Expect = 7e-42
 Identities = 67/129 (51%), Positives = 89/129 (68%), Gaps = 4/129 (3%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60
            +SSSSS N +    YDVF SF G+DVR  F+SH    L RK I+ F D+++ R   + P
Sbjct: 2   ASSSSSSRNWV----YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L  AI  S+I++V+FSK YASS WCLNEL++I+  K + GQ+V+PVFY +DPS VR QT
Sbjct: 58  ELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT 117

Query: 121 GTFGDSFSK 129
           G FG++F K
Sbjct: 118 GDFGEAFEK 126

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  126 bits (318), Expect = 2e-38
 Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 3/125 (2%)

Query: 15  KYDVFLSFRGK-DVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISI 73
           +YDVF+S+ GK DVR+ F+SHL   L    +  F DD    G      +  AIE S+I+I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 74  VIFSKGYASSRWCLNELVKILESKNKYGQI-VVPVFYLVDPSDVRNQTGTFGDSFSKLEE 132
           V+ S  YA S WCL+ELV  LE+  + G + V+P+FY V PSDVR Q G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 133 RFKEK 137
           ++ E 
Sbjct: 120 KWPED 124

Length = 140

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  126 bits (318), Expect = 3e-38
 Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 3/124 (2%)

Query: 18  VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIF 76
           VF+SF GKD R  F+SHL   L  K I    DD+    G+ I  +L  AIE S+ +IVIF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 77  SKGYASSRWCLNELVKILESKNKYG--QIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           S  YASS WCL+ELV+I++   + G  ++++P+FY VDPSDVR Q+G FG +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 135 KEKM 138
            +K 
Sbjct: 121 GDKE 124

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 65.6 bits (160), Expect = 3e-14
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 12  PHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSK 70
                DVF++ RG D +    + L   L R  +  F D+K +  GD++   ++SAI   K
Sbjct: 23  SAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCK 82

Query: 71  ISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117
           + + +FS  Y  S +CL+EL  I+ESK +    V+P+F  V PS +R
Sbjct: 83  VGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 52.6 bits (127), Expect = 5e-10
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 18  VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFS 77
           VF+S+   D    +   L  AL    I  + D  +  G++    +  A+  + + +V+ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 78  KGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDV 116
             Y +S WC  E    LE     G+ ++PV   ++  ++
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.93
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.91
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.82
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.25
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.92
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.32
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.59
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	95.64
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	94.87
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	94.72
COG4271	233	Predicted nucleotide-binding protein containing TI	93.34
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	89.26
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	84.84
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	81.37
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	80.69

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=5.6e-35  Score=215.15  Aligned_cols=109  Identities=38%  Similarity=0.617  Sum_probs=101.4

Q ss_pred             CCCCCCCCCCCceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCC
Q 039252            3 SSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYA   81 (139)
Q Consensus         3 ~~~~~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~   81 (139)
                      +||||.+    ..|||||||++.|+++.|+.+|+.+|+++||++|+|.. +.+|+.|.++|.+||++|+++|+|+||+|.
T Consensus        18 ~~~~~~~----~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya   93 (187)
T PLN03194         18 PSSSSSA----KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYC   93 (187)
T ss_pred             ccCCCCC----CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcc
Confidence            3445555    78999999999999989999999999999999999998 999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccc
Q 039252           82 SSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ  119 (139)
Q Consensus        82 ~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~  119 (139)
                      .|.||++||..++++.    ..||||||+++|++|++|
T Consensus        94 ~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q  127 (187)
T PLN03194         94 ESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVV  127 (187)
T ss_pred             cchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhcc
Confidence            9999999999998753    489999999999999996

>PLN03210 Resistant to P

Probab=100.00  E-value=9.2e-35  Score=261.92  Aligned_cols=135  Identities=51%  Similarity=0.846  Sum_probs=125.7

Q ss_pred             CCCCCCCCCCCCCceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCC
Q 039252            1 MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGY   80 (139)
Q Consensus         1 ~~~~~~~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~   80 (139)
                      |||||||+   +.+.|||||||+++|+|+.|+.||+.+|.++||++|.|+.+..|+.|..++.+||++|++.|+|+|++|
T Consensus         1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y   77 (1153)
T PLN03210          1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY   77 (1153)
T ss_pred             CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence            67766543   369999999999999999999999999999999999988799999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccCchHHHHHHHHHHhcccC
Q 039252           81 ASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKM  138 (139)
Q Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~~  138 (139)
                      +.|.||++||..+++++++.++.||||||+|+|++|+.|+|.||++|.++++...+++
T Consensus        78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~  135 (1153)
T PLN03210         78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDE  135 (1153)
T ss_pred             ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhH
Confidence            9999999999999999988999999999999999999999999999999987765543

syringae 6; Provisional

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.93  E-value=5.3e-25  Score=154.77  Aligned_cols=122  Identities=44%  Similarity=0.725  Sum_probs=103.4

Q ss_pred             eeeEEEecccC-cchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHH
Q 039252           15 KYDVFLSFRGK-DVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (139)
Q Consensus        15 ~yDVFISys~~-D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a   93 (139)
                      +|||||||+++ +....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            59999999993 444679999999999999999999873333333 3999999999999999999999999999999999


Q ss_pred             HHHHhh-cCCEEEEEEEecCCCccccccCchHHHHHHHHHHhccc
Q 039252           94 LESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEK  137 (139)
Q Consensus        94 ~~~~~~-~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~  137 (139)
                      .+.... ...+||||+++..|.++.++.+.++..+..+...+.++
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~  124 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPED  124 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCc
Confidence            987644 66899999999888889999999999998875555443

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.91  E-value=4.2e-26  Score=161.97  Aligned_cols=115  Identities=39%  Similarity=0.603  Sum_probs=100.7

Q ss_pred             EEEecccCcchhhHHHHHHHHHhcC--CceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHH
Q 039252           18 VFLSFRGKDVRHNFISHLNAALCRK--KIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKIL   94 (139)
Q Consensus        18 VFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~   94 (139)
                      |||||++.+.+++|+.+|...|++.  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|+||+.|+..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333568999999999999  999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhc--CCEEEEEEEecCCCccc-cccCchHHHHHHHHH
Q 039252           95 ESKNKY--GQIVVPVFYLVDPSDVR-NQTGTFGDSFSKLEE  132 (139)
Q Consensus        95 ~~~~~~--~~~iiPV~~~v~p~~v~-~~~~~~~~~f~~~~~  132 (139)
                      ++....  ...|+||++++.++++. .+.+.|+..|....+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~  121 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLR  121 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEE
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhhee
Confidence            997554  48999999999999999 688888887765544

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.82  E-value=3.8e-21  Score=128.99  Aligned_cols=87  Identities=31%  Similarity=0.494  Sum_probs=74.9

Q ss_pred             EEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHH
Q 039252           18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESK   97 (139)
Q Consensus        18 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~   97 (139)
                      |||||++.|.  .+|..|...|++.|+++|+|..+.+|..+.+.|.++|++|+++|+++||+|..|+||..|+..|.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999995  499999999999999999996588999999999999999999999999999999999999999944  


Q ss_pred             hhcCCEEEEEEEe
Q 039252           98 NKYGQIVVPVFYL  110 (139)
Q Consensus        98 ~~~~~~iiPV~~~  110 (139)
                        .+.+||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              33489999975

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.25  E-value=1.6e-11  Score=101.84  Aligned_cols=91  Identities=24%  Similarity=0.405  Sum_probs=79.5

Q ss_pred             CceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCC--------Cc
Q 039252           13 HTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYA--------SS   83 (139)
Q Consensus        13 ~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~--------~S   83 (139)
                      +++.||||||++.- .+..+.-|+-.|.-+||+||+|-+ +..|. +.+.+...|..++.+|+|++|+.+        .-
T Consensus       610 skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe  687 (832)
T KOG3678|consen  610 SKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE  687 (832)
T ss_pred             cCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence            47899999998774 457999999999999999999999 88886 677899999999999999999964        36


Q ss_pred             hhHHHHHHHHHHHHhhcCCEEEEEEE
Q 039252           84 RWCLNELVKILESKNKYGQIVVPVFY  109 (139)
Q Consensus        84 ~wc~~El~~a~~~~~~~~~~iiPV~~  109 (139)
                      .|...|+..|+++.+    .|||||=
T Consensus       688 DWVHKEl~~Afe~~K----NIiPI~D  709 (832)
T KOG3678|consen  688 DWVHKELKCAFEHQK----NIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHhcC----Ceeeeec
Confidence            788899999998776    7999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.92  E-value=1.9e-09  Score=75.63  Aligned_cols=90  Identities=22%  Similarity=0.364  Sum_probs=49.7

Q ss_pred             eeEEEecccCcchhhHHHHHHHHHhcC-------CceE-Ee---------eCC-CCCCCCcchhhHHhhhcCcEEEEEEc
Q 039252           16 YDVFLSFRGKDVRHNFISHLNAALCRK-------KIVT-FN---------DDK-LNRGDEISPSLSSAIEGSKISIVIFS   77 (139)
Q Consensus        16 yDVFISys~~D~~~~fv~~L~~~L~~~-------Gi~v-f~---------d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS   77 (139)
                      |.|||||++.|.. ..+..|.+.+...       ++.. +.         +.. ......|...|.++|.+|+++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999999853 4778888777663       2221 11         111 22334778899999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHhhcCCEEEEEEEe
Q 039252           78 KGYASSRWCLNELVKILESKNKYGQIVVPVFYL  110 (139)
Q Consensus        78 ~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~  110 (139)
                      ++...|.|+..|+..|++    .+..||.|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence            999999999999999887    34478888764

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.32  E-value=5.7e-06  Score=58.82  Aligned_cols=64  Identities=20%  Similarity=0.307  Sum_probs=52.8

Q ss_pred             eEEEecccCcch-hhHHHHHHHHHhcC-CceEEeeCC-CC--CCCCcchhhHHhhhcCcEEEEEEcCCC
Q 039252           17 DVFLSFRGKDVR-HNFISHLNAALCRK-KIVTFNDDK-LN--RGDEISPSLSSAIEGSKISIVIFSKGY   80 (139)
Q Consensus        17 DVFISys~~D~~-~~fv~~L~~~L~~~-Gi~vf~d~~-~~--~G~~i~~~i~~aI~~S~~~I~vlS~~~   80 (139)
                      -|||||++.... ...|..|...|.+. |+.|.+|.. ..  ++..+..=+.+++++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999986543 36789999999999 999999998 63  366677778888999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.59  E-value=0.00026  Score=49.56  Aligned_cols=96  Identities=19%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             EEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCC-------------Cc
Q 039252           18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYA-------------SS   83 (139)
Q Consensus        18 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~-------------~S   83 (139)
                      |||.|+ .|.  .++..+...|+..|+.+-.=.. ...|..+.+.+.+.+.+++.+|++++|+=.             ..
T Consensus         2 VFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~aR   78 (125)
T PF10137_consen    2 VFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRAR   78 (125)
T ss_pred             EEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCccccccccc
Confidence            899998 553  4888999999988888644444 788999999999999999999999999622             12


Q ss_pred             hhHHHHHHHHHHHHhhcCCEEEEEEEe--cCCCcccc
Q 039252           84 RWCLNELVKILESKNKYGQIVVPVFYL--VDPSDVRN  118 (139)
Q Consensus        84 ~wc~~El~~a~~~~~~~~~~iiPV~~~--v~p~~v~~  118 (139)
                      .....|+..++.+.  +..+++-+.-+  -.|+|+..
T Consensus        79 ~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl~G  113 (125)
T PF10137_consen   79 QNVIFELGLFIGKL--GRERVFILVKGGVELPSDLSG  113 (125)
T ss_pred             cceeehhhHHHhhc--CcceEEEEEcCCccCCcccCC
Confidence            34578999988754  22345544422  22666543

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=95.64  E-value=0.049  Score=35.04  Aligned_cols=65  Identities=18%  Similarity=0.174  Sum_probs=48.5

Q ss_pred             EEEecccCcchhhHHHHHHHHHhcCCceEEeeCCC-CCCCCcchhhHHhhhcCcEEEEEEcCCCCCc
Q 039252           18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKL-NRGDEISPSLSSAIEGSKISIVIFSKGYASS   83 (139)
Q Consensus        18 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~-~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S   83 (139)
                      ||||-.-.|-. .--+.|.+.|.+.|..+..-+.+ ..+..-.+.+.+.|++|+++|.++...|-..
T Consensus         2 VFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    2 VFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             EEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            89998877753 34467888888888776444332 3355666788899999999999999998653

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=94.87  E-value=0.031  Score=43.80  Aligned_cols=94  Identities=16%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             CCCceeeEEEecccCcchhhHHHHHHHHHhcC--CceEEeeCC----CCCCCCcchhhHHhhh-cCcEEEEEEcCCCCCc
Q 039252           11 IPHTKYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFNDDK----LNRGDEISPSLSSAIE-GSKISIVIFSKGYASS   83 (139)
Q Consensus        11 ~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~----~~~G~~i~~~i~~aI~-~S~~~I~vlS~~~~~S   83 (139)
                      +..+.||+=+||.++-.  ..|+....+++..  .+..|+|..    +.+| ++.+-+...-. .|++.++....+|...
T Consensus       173 ~~~~~~DiG~SFaGEAR--~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEAR--NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhhh--hHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEe
Confidence            35689999999998753  5999999999844  566788875    3333 34433333322 6888999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCEEEEEEE
Q 039252           84 RWCLNELVKILESKNKYGQIVVPVFY  109 (139)
Q Consensus        84 ~wc~~El~~a~~~~~~~~~~iiPV~~  109 (139)
                      .||..|...+-...  .-..+.||.|
T Consensus       250 ~~c~~E~~~~r~~~--~~d~~~rI~~  273 (329)
T COG4916         250 STCHIEGLEGRLNP--ILDTGFRIKY  273 (329)
T ss_pred             eeeccchhhccccc--cccccceEEE
Confidence            99999977654321  1124556655

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=94.72  E-value=0.24  Score=33.37  Aligned_cols=77  Identities=16%  Similarity=0.028  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCC--CC---CCC----CcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHHhh
Q 039252           29 HNFISHLNAALCRKKIVTFNDDK--LN---RGD----EISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNK   99 (139)
Q Consensus        29 ~~fv~~L~~~L~~~Gi~vf~d~~--~~---~G~----~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~   99 (139)
                      ..+...+.+.|++.|+.++...+  ..   .+.    .+.+.-.++|++|+++|+++.+.- .+.=+..|+..|....+ 
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algk-   90 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGK-   90 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCC-
Confidence            46889999999999999998774  21   122    233344578999999999988755 67778899999976433 


Q ss_pred             cCCEEEEEEEe
Q 039252          100 YGQIVVPVFYL  110 (139)
Q Consensus       100 ~~~~iiPV~~~  110 (139)
                         +|+-+.-+
T Consensus        91 ---pv~~~~~d   98 (113)
T PF05014_consen   91 ---PVILLTED   98 (113)
T ss_dssp             ---EEEEEECC
T ss_pred             ---EEEEEEcC
Confidence               55544433

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=93.34  E-value=0.33  Score=36.72  Aligned_cols=96  Identities=22%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             eEEEecccCcchhhHHHHHHHHHhcC-C-ceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCC--------C----
Q 039252           17 DVFLSFRGKDVRHNFISHLNAALCRK-K-IVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYA--------S----   82 (139)
Q Consensus        17 DVFISys~~D~~~~fv~~L~~~L~~~-G-i~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~--------~----   82 (139)
                      -|||-|+++    ..|.....+|++. - -.+|.|.-+..|..+.+.+.+-|.+++..|++.+|+=.        .    
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            899999764    3777777888755 3 34787776888999999999999999999999999943        1    


Q ss_pred             --chhHHHHHHHHHHHHhhcCCEEEEEEEe----cCCCcccc
Q 039252           83 --SRWCLNELVKILESKNKYGQIVVPVFYL----VDPSDVRN  118 (139)
Q Consensus        83 --S~wc~~El~~a~~~~~~~~~~iiPV~~~----v~p~~v~~  118 (139)
                        ......||..++.+.  ++.+++-+.-+    --|||+..
T Consensus       160 raRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~G  199 (233)
T COG4271         160 RARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAG  199 (233)
T ss_pred             cccccchhhHhhHHhhc--ccceEEEEecccccccCccccCc
Confidence              233567888888764  23355444331    23777654

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=89.26  E-value=2.1  Score=26.91  Aligned_cols=61  Identities=10%  Similarity=0.063  Sum_probs=39.6

Q ss_pred             eeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCC
Q 039252           16 YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGY   80 (139)
Q Consensus        16 yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~   80 (139)
                      ++|+|...+++. ...+..+...|.+.|+++-+|.+   +..+...+..|-..--.+++++.++.
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~e   62 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDKE   62 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcch
Confidence            677777655443 35778899999999999998865   23455566666544333455555443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=84.84  E-value=4.9  Score=25.24  Aligned_cols=60  Identities=18%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             eeEEEecccC---cchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCC
Q 039252           16 YDVFLSFRGK---DVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKG   79 (139)
Q Consensus        16 yDVFISys~~---D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~   79 (139)
                      ++|+|-..+.   . ....+..+...|.+.|+++-+|..   +..+...+..|-...-.+++++.++
T Consensus         2 ~~v~ii~~~~~~~~-~~~~a~~~~~~Lr~~g~~v~~~~~---~~~~~k~~~~a~~~g~~~~iiig~~   64 (94)
T cd00738           2 IDVAIVPLTDPRVE-AREYAQKLLNALLANGIRVLYDDR---ERKIGKKFREADLRGVPFAVVVGED   64 (94)
T ss_pred             eEEEEEECCCCcHH-HHHHHHHHHHHHHHCCCEEEecCC---CcCHhHHHHHHHhCCCCEEEEECCC
Confidence            5777665443   2 235778899999999999998764   3455555666654444566777764

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=81.37  E-value=12  Score=24.47  Aligned_cols=61  Identities=15%  Similarity=0.099  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCCceEEeeCCC--CCCCCcchhhH---HhhhcCcEEEEEEcCCCCCchhHHHHHHHHHH
Q 039252           33 SHLNAALCRKKIVTFNDDKL--NRGDEISPSLS---SAIEGSKISIVIFSKGYASSRWCLNELVKILE   95 (139)
Q Consensus        33 ~~L~~~L~~~Gi~vf~d~~~--~~G~~i~~~i~---~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~   95 (139)
                      ....+.|...|+.|.---.+  ..|.++.+-+.   ..+..|+.++++  |++..|.=|+-|...|..
T Consensus        19 ~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l--~gWe~S~GA~~E~~~A~~   84 (92)
T PF14359_consen   19 NAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYML--PGWENSRGARLEHELAKK   84 (92)
T ss_pred             HHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEc--CCcccCcchHHHHHHHHH
Confidence            45778889999877644443  45555554333   456678755554  999999999999998875

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=80.69  E-value=3.9  Score=26.10  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252           29 HNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI   75 (139)
Q Consensus        29 ~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v   75 (139)
                      ..++..|...|.+.|+++.+|..   +..+...+..|-. +...+|+|
T Consensus        15 ~~~a~~l~~~L~~~gi~v~~d~~---~~~~~k~~~~a~~~g~p~~iii   59 (94)
T PF03129_consen   15 IEYAQELANKLRKAGIRVELDDS---DKSLGKQIKYADKLGIPFIIII   59 (94)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEESS---SSTHHHHHHHHHHTTESEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEECC---CCchhHHHHHHhhcCCeEEEEE
Confidence            35789999999999999999975   3444456666654 44444444

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		5e-30
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-28
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		8e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/121 (52%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 14  TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKIS 72
           TKYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G   SP L S IE S+ +
Sbjct: 7   TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 73  IVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEE 132
           +V+ S+ YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR QTG   + F K   
Sbjct: 67  VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 133 R 133
           R
Sbjct: 127 R 127

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 91/141 (64%), Gaps = 2/141 (1%)
Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTF-NDDKLNRGDEIS 59
           ++ S++     P  +Y+VFLSFRG D R  F   L  +L R KI TF +DD+L +G EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80
Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
           P+L  AI+ SKI + I S GYA S+WCL EL +I+  + +   +I++P+FY+VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 119 QTGTFGDSFSKLEERFKEKMV 139
           QTG +  +F K   +F  + +
Sbjct: 141 QTGCYKKAFRKHANKFDGQTI 161

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 2   ASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAAL-CRKKIVTFNDDKLNRGDEISP 60
           A  +++ ++     +D+F+S   +D + +F+  L   L      V ++D  L  GD +  
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65
Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           S+   +  S+  IV+ S  +    W   EL  + + ++     ++P+++ V   +V + +
Sbjct: 66  SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125
Query: 121 GTFGDSFS 128
            T  D  +
Sbjct: 126 PTMADKLA 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	2e-77
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	9e-77
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-69
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	9e-14
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	4e-09
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	1e-06
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	5e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  226 bits (578), Expect = 2e-77
 Identities = 65/140 (46%), Positives = 86/140 (61%), Gaps = 8/140 (5%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEIS 59
           M+S +++       KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G   S
Sbjct: 1   MSSHTAT-------KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFS 53

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P L S IE S+ ++V+ S+ YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR Q
Sbjct: 54  PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113

Query: 120 TGTFGDSFSKLEERFKEKMV 139
           TG   + F K   R   + V
Sbjct: 114 TGVLAEQFKKHASREDPEKV 133

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  225 bits (576), Expect = 9e-77
 Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 2/141 (1%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDD-KLNRGDEIS 59
           ++ S++     P  +Y+VFLSFRG D R  F   L  +L R KI TF DD +L +G EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
           P+L  AI+ SKI + I S GYA S+WCL EL +I+  + +   +I++P+FY+VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140

Query: 119 QTGTFGDSFSKLEERFKEKMV 139
           QTG +  +F K   +F  + +
Sbjct: 141 QTGCYKKAFRKHANKFDGQTI 161

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  203 bits (519), Expect = 6e-69
 Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 2/139 (1%)

Query: 2   ASSSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISP 60
           A  +++ ++     +D+F+S   +D + +F+  L   L       + DD  L  GD +  
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           S+   +  S+  IV+ S  +    W   EL  + + ++     ++P+++ V   +V + +
Sbjct: 66  SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125

Query: 121 GTFGDSFSKLEERFKEKMV 139
            T  D  +          +
Sbjct: 126 PTMADKLAFNTSTKSVDEI 144

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 62.8 bits (153), Expect = 9e-14
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 15  KYDVFLSFRGKDVR--HNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKIS 72
            YDV +    +D+    + +S+L  +    +      D    G  I   L  A+  S   
Sbjct: 10  DYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRD-ATPGGAIVSELCQALSSSHCR 68

Query: 73  IVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117
           +++ + G+    WC  ++++ L          +P+   +  +   
Sbjct: 69  VLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 15  KYDVFLSFRGKD---VRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKI 71
           ++  F+S+   D   V++  I +L        I  +     + G  IS ++ S IE S  
Sbjct: 35  RFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESY-FDPGKSISENIVSFIEKSYK 93

Query: 72  SIVIFSKGYASSRWCLNEL 90
           SI + S  +  + WC  E 
Sbjct: 94  SIFVLSPNFVQNEWCHYEF 112

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 16 YDVFLSFRGKD---VRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKIS 72
          YD F+S+  +D   V +  +  L       K+     D    G  I  ++  +IE S  +
Sbjct: 6  YDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRD-FIHGKWIIDNIIDSIEKSHKT 64

Query: 73 IVIFSKGYASSRWCLNEL 90
          + + S+ +  S W   EL
Sbjct: 65 VFVLSENFVKSEWXKYEL 82

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 14/109 (12%)

Query: 15  KYDVFLSFRGKDVR---------HNFISHLNAALCRKKI---VTFNDDKLNRGDEISPSL 62
            YD +LS+   D             F   +   +  K     +   D  L         +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 63  SSAIEGSKISIVIFSKGYA-SSRWCLNELVKIL-ESKNKYGQIVVPVFY 109
           +  ++ SK  I++ +  Y     W + EL   L          V+ +  
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIEC 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.54
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.42
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	95.99
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	91.1
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	89.99
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	89.82
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	86.02

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1.2e-43  Score=264.92  Aligned_cols=134  Identities=46%  Similarity=0.824  Sum_probs=118.6

Q ss_pred             CCCCCCCCCCceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCC
Q 039252            4 SSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYAS   82 (139)
Q Consensus         4 ~~~~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~   82 (139)
                      |+++++..+.+.|||||||+++|.++.|+.+|+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|+.
T Consensus        24 s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~  103 (204)
T 3ozi_A           24 STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD  103 (204)
T ss_dssp             ----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGG
T ss_pred             CCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccccc
Confidence            333444468899999999999999888999999999999999999988 9999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhh-cCCEEEEEEEecCCCccccccCchHHHHHHHHHHhccc
Q 039252           83 SRWCLNELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEK  137 (139)
Q Consensus        83 S~wc~~El~~a~~~~~~-~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~  137 (139)
                      |+||++||..++++.+. ++++||||||+++|++||.|+|.||++|+++++++.++
T Consensus       104 S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~  159 (204)
T 3ozi_A          104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQ  159 (204)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHH
T ss_pred             CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHH
Confidence            99999999999999865 57899999999999999999999999999999887654

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-42  Score=254.70  Aligned_cols=122  Identities=52%  Similarity=0.856  Sum_probs=104.6

Q ss_pred             CceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHH
Q 039252           13 HTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELV   91 (139)
Q Consensus        13 ~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~   91 (139)
                      .+.|||||||+++|++++|+.+|+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|++|+||++||.
T Consensus         6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~   85 (176)
T 3jrn_A            6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV   85 (176)
T ss_dssp             -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred             CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence            389999999999999889999999999999999999988 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCEEEEEEEecCCCccccccCchHHHHHHHHHHh
Q 039252           92 KILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF  134 (139)
Q Consensus        92 ~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~  134 (139)
                      .++++.+.++++||||||+++|++|++|+|.||++|.+++++.
T Consensus        86 ~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~  128 (176)
T 3jrn_A           86 TIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE  128 (176)
T ss_dssp             HHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTS
T ss_pred             HHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhcc
Confidence            9999988889999999999999999999999999999998873

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=1.8e-36  Score=217.63  Aligned_cols=121  Identities=21%  Similarity=0.354  Sum_probs=110.7

Q ss_pred             CCCCceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHH
Q 039252           10 MIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLN   88 (139)
Q Consensus        10 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~   88 (139)
                      +++.+.|||||||+++|. .+|+.+|..+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+||+|+.|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D~-~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWEDK-ADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGGT-TTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccCh-HHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            567899999999999994 57999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCEEEEEEEecCCCccccccCchHHHHHHHH
Q 039252           89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE  131 (139)
Q Consensus        89 El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~  131 (139)
                      |+..++++...++.+||||||++.|++|+++.|.||++|..+.
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~  136 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT  136 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence            9999998876677899999999999999999999998776543

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=3.4e-30  Score=183.82  Aligned_cols=108  Identities=18%  Similarity=0.317  Sum_probs=81.0

Q ss_pred             CCCCCCCCCCceeeEEEecccCcchhhHHHHHHHHHhc--CCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCC
Q 039252            4 SSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCR--KKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGY   80 (139)
Q Consensus         4 ~~~~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~--~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~   80 (139)
                      +|++++    +.|||||||+++|.+  ||.+|..+|++  .|+++|++.+ +.||+.+.++|.++|++|+++|+|+||+|
T Consensus         3 ~~~r~~----k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y   76 (146)
T 3ub2_A            3 GSSRWS----KDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGF   76 (146)
T ss_dssp             -CCTTS----SSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHH
T ss_pred             CCCCCC----CcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECccc
Confidence            445566    999999999999975  89999999998  5999999999 99999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc
Q 039252           81 ASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR  117 (139)
Q Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~  117 (139)
                      ++|+||+.|+..|+++...+..+||||++++.++++.
T Consensus        77 ~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp  113 (146)
T 3ub2_A           77 LQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP  113 (146)
T ss_dssp             HHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred             ccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence            9999999999999997633344788999988866654

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=2.6e-27  Score=171.16  Aligned_cols=100  Identities=18%  Similarity=0.287  Sum_probs=90.0

Q ss_pred             CCceeeEEEecccCcchhhHHHHHHHHHhcC--CceEEeeCC-CCCCCCcchhhHHhhh-cCcEEEEEEcCCCCCchhHH
Q 039252           12 PHTKYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFNDDK-LNRGDEISPSLSSAIE-GSKISIVIFSKGYASSRWCL   87 (139)
Q Consensus        12 ~~~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~-~~~G~~i~~~i~~aI~-~S~~~I~vlS~~~~~S~wc~   87 (139)
                      .++.|||||||+++|.  .||.+|..+|++.  |+++|++.+ +.||+.+.++|.++|+ +|+.+|+|+||+|++|.||+
T Consensus        13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            4689999999999995  5999999999984  799999999 9999999999999999 79999999999999999999


Q ss_pred             HHHHHHHHHH-hhcCCEEEEEEEecCC
Q 039252           88 NELVKILESK-NKYGQIVVPVFYLVDP  113 (139)
Q Consensus        88 ~El~~a~~~~-~~~~~~iiPV~~~v~p  113 (139)
                      .|+..|+++. .+++.+||||+|+.-+
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999875 3445689999997543

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=1.1e-27  Score=171.24  Aligned_cols=103  Identities=16%  Similarity=0.292  Sum_probs=91.0

Q ss_pred             CCceeeEEEecccCcchhhHHHH-HHHHHhcC--CceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHH
Q 039252           12 PHTKYDVFLSFRGKDVRHNFISH-LNAALCRK--KIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCL   87 (139)
Q Consensus        12 ~~~~yDVFISys~~D~~~~fv~~-L~~~L~~~--Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~   87 (139)
                      +++.|||||||+++|.  .||.+ |...|++.  |+++|+|.+ +.||+.+.++|.++|++|+++|+|+||+|++|+||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4689999999999996  59986 99999986  999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-hhcCCEEEEEEEe-cCCCcc
Q 039252           88 NELVKILESK-NKYGQIVVPVFYL-VDPSDV  116 (139)
Q Consensus        88 ~El~~a~~~~-~~~~~~iiPV~~~-v~p~~v  116 (139)
                      .|+..|+++. .+++.+||||+|+ +.+.++
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            9999998643 4567789999996 444333

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.2e-26  Score=166.10  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=88.2

Q ss_pred             ceeeEEEecccCcc---------hhhHHHHHHH-HHh-cCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCC
Q 039252           14 TKYDVFLSFRGKDV---------RHNFISHLNA-ALC-RKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYA   81 (139)
Q Consensus        14 ~~yDVFISys~~D~---------~~~fv~~L~~-~L~-~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~   81 (139)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|++.+ +.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999996         3468877555 699 79999999999 999999999999999999999999999997


Q ss_pred             -CchhHHHHHHHHHHHH-hhcCCEEEEEEEecCC
Q 039252           82 -SSRWCLNELVKILESK-NKYGQIVVPVFYLVDP  113 (139)
Q Consensus        82 -~S~wc~~El~~a~~~~-~~~~~~iiPV~~~v~p  113 (139)
                       .|+||..|+..|+++. .+++..||||+++..+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999876 5567899999986444

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=4.3e-27  Score=172.74  Aligned_cols=99  Identities=19%  Similarity=0.353  Sum_probs=85.7

Q ss_pred             CCCceeeEEEecccCcchhhHHH-HHHHHHhc--CCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhH
Q 039252           11 IPHTKYDVFLSFRGKDVRHNFIS-HLNAALCR--KKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWC   86 (139)
Q Consensus        11 ~~~~~yDVFISys~~D~~~~fv~-~L~~~L~~--~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc   86 (139)
                      ..++.|||||||+++|.  .||. +|...|++  +|+++|++.+ +.||+.+.++|.++|++|+++|+|+||+|++|+||
T Consensus        31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc  108 (178)
T 2j67_A           31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC  108 (178)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred             CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence            46789999999999996  5886 59999998  8999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hhcCCEEEEEEEec
Q 039252           87 LNELVKILESK-NKYGQIVVPVFYLV  111 (139)
Q Consensus        87 ~~El~~a~~~~-~~~~~~iiPV~~~v  111 (139)
                      ..|+..|+++. .+++.+||||+|+.
T Consensus       109 ~~El~~a~~~~~~~~~~~vIpV~~~~  134 (178)
T 2j67_A          109 HYEFYFAHHNLFHENSDHIILILLEP  134 (178)
T ss_dssp             GTHHHHTTCC-------CEEEEESSC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEecC
Confidence            99999998654 44567899999964

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=2e-21  Score=168.75  Aligned_cols=100  Identities=18%  Similarity=0.317  Sum_probs=90.4

Q ss_pred             CCceeeEEEecccCcchhhHH-HHHHHHHhc-----CCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCch
Q 039252           12 PHTKYDVFLSFRGKDVRHNFI-SHLNAALCR-----KKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSR   84 (139)
Q Consensus        12 ~~~~yDVFISys~~D~~~~fv-~~L~~~L~~-----~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~   84 (139)
                      +.+.|||||||+++|..  || ..|...||+     .|+++|+++| +.||+.+.++|.++|++||++|+|+|++|++|+
T Consensus       667 ~~~~yd~fisy~~~d~~--~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          667 DMYKYDAYLCFSSKDFT--WVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             SCCCCSEEEECCSTTHH--HHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             cceeccEEEEeeCCcHH--HHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            57899999999999963  55 789999985     5899999999 999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHH-hhcCCEEEEEEEecCC
Q 039252           85 WCLNELVKILESK-NKYGQIVVPVFYLVDP  113 (139)
Q Consensus        85 wc~~El~~a~~~~-~~~~~~iiPV~~~v~p  113 (139)
                      ||..|+..|+++. ++++.+||||+++..|
T Consensus       745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            9999999998875 5567899999997554

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.54  E-value=1.1e-07  Score=64.34  Aligned_cols=73  Identities=8%  Similarity=-0.048  Sum_probs=55.7

Q ss_pred             ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHH
Q 039252           14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (139)
Q Consensus        14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a   93 (139)
                      .+|.+||||+.+|    -.+.|...|.+.|+..- +              +.|+.|+++|++.++....|+||..|+..|
T Consensus         3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh----HHHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            5799999999987    24456666654355432 1              689999999999999999999999999888


Q ss_pred             HHHHhhcCCEEEEEEE
Q 039252           94 LESKNKYGQIVVPVFY  109 (139)
Q Consensus        94 ~~~~~~~~~~iiPV~~  109 (139)
                      .+    .+.+||-|..
T Consensus        64 ~~----~gkpIigV~~   75 (111)
T 1eiw_A           64 RK----SSKPIITVRP   75 (111)
T ss_dssp             TT----TTCCEEEECC
T ss_pred             HH----cCCCEEEEEc
Confidence            65    3446776653

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.42  E-value=0.00025  Score=51.67  Aligned_cols=83  Identities=20%  Similarity=0.207  Sum_probs=62.0

Q ss_pred             ccCcchhhHHHHHHHHHhcCCceEEeeCC-C----CC----CCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHH
Q 039252           23 RGKDVRHNFISHLNAALCRKKIVTFNDDK-L----NR----GDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (139)
Q Consensus        23 s~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~----~~----G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a   93 (139)
                      ..+|.  ...+.|+.--++..+--|.|.. .    .-    -..|...|.+.|.+|+.+|+++|++...|.|...|+..|
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            45554  3667777777666665566653 2    22    235677889999999999999999999999999999999


Q ss_pred             HHHHhhcCCEEEEEEEe
Q 039252           94 LESKNKYGQIVVPVFYL  110 (139)
Q Consensus        94 ~~~~~~~~~~iiPV~~~  110 (139)
                      +.   +.+.+||-|..+
T Consensus       105 i~---~~~~PII~Vy~~  118 (189)
T 3hyn_A          105 IG---TKGLPVIVIYPD  118 (189)
T ss_dssp             TT---TTCCCEEEEETT
T ss_pred             HH---hcCCcEEEEECC
Confidence            83   245588888765

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=95.99  E-value=0.023  Score=40.29  Aligned_cols=75  Identities=11%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHhcCCceEEeeCC--CCCCCCcchhhHHhhhcCcEEEEEEcC--CCCCchhHHHHHHHHHHHHhhcCCEEE
Q 039252           30 NFISHLNAALCRKKIVTFNDDK--LNRGDEISPSLSSAIEGSKISIVIFSK--GYASSRWCLNELVKILESKNKYGQIVV  105 (139)
Q Consensus        30 ~fv~~L~~~L~~~Gi~vf~d~~--~~~G~~i~~~i~~aI~~S~~~I~vlS~--~~~~S~wc~~El~~a~~~~~~~~~~ii  105 (139)
                      ++.+.+.+.|++.|+.|++..+  ...+..+.++-.++|++|+++|++++|  .-..+.-+..|+..|....+    +|+
T Consensus        27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK----PVi  102 (161)
T 2f62_A           27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK----MVL  102 (161)
T ss_dssp             HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC----EEE
T ss_pred             HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC----EEE
Confidence            6889999999999999988554  111223333347889999999999997  44556668999999886443    665


Q ss_pred             EEE
Q 039252          106 PVF  108 (139)
Q Consensus       106 PV~  108 (139)
                      -+.
T Consensus       103 ~l~  105 (161)
T 2f62_A          103 TFT  105 (161)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            543

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=91.10  E-value=0.82  Score=32.05  Aligned_cols=86  Identities=9%  Similarity=0.055  Sum_probs=56.5

Q ss_pred             ceeeEEEecccC-cchhh-HHHHHHHHHhcCCceEEeeCCCCCCC-----C-------cchhhHHhhhcCcEEEEEEcCC
Q 039252           14 TKYDVFLSFRGK-DVRHN-FISHLNAALCRKKIVTFNDDKLNRGD-----E-------ISPSLSSAIEGSKISIVIFSKG   79 (139)
Q Consensus        14 ~~yDVFISys~~-D~~~~-fv~~L~~~L~~~Gi~vf~d~~~~~G~-----~-------i~~~i~~aI~~S~~~I~vlS~~   79 (139)
                      ++..|||+=.-. +.... ....+.+.|++.| .|+.+....|..     .       +...-.+.|++|+++|++++  
T Consensus        10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~--   86 (165)
T 2khz_A           10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT--   86 (165)
T ss_dssp             CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence            455799985433 22222 4589999999999 886544322221     1       12233478999999999987  


Q ss_pred             CCCchhHHHHHHHHHHHHhhcCCEEEEE
Q 039252           80 YASSRWCLNELVKILESKNKYGQIVVPV  107 (139)
Q Consensus        80 ~~~S~wc~~El~~a~~~~~~~~~~iiPV  107 (139)
                       ..+.-+..|+..|....    .+|+-+
T Consensus        87 -~~d~Gt~~EiGyA~alg----KPVi~l  109 (165)
T 2khz_A           87 -QPSLGVGYELGRAVALG----KPILCL  109 (165)
T ss_dssp             -SCCHHHHHHHHHHHHTC----SSEEEE
T ss_pred             -CCCCCHHHHHHHHHHCC----CEEEEE
Confidence             56788899999998643    356544

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=89.99  E-value=1.4  Score=30.79  Aligned_cols=64  Identities=13%  Similarity=0.113  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHhcCCceEEeeCCCC-----CCCC-------cchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHH
Q 039252           30 NFISHLNAALCRKKIVTFNDDKLN-----RGDE-------ISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESK   97 (139)
Q Consensus        30 ~fv~~L~~~L~~~Gi~vf~d~~~~-----~G~~-------i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~   97 (139)
                      ++...+.+.|++.| .|+-..-..     .|..       +.+.-.++|++|+++|++++   ..+.-...|+..|....
T Consensus        19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~alg   94 (152)
T 4fyk_A           19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVALG   94 (152)
T ss_dssp             HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcC
Confidence            67799999999999 664321111     1221       44455678999999999988   66888899999998743

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=89.82  E-value=1.4  Score=31.00  Aligned_cols=75  Identities=11%  Similarity=0.069  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHhcC--CceEEeeCC-CC----CCCCcc----hhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHHh
Q 039252           30 NFISHLNAALCRK--KIVTFNDDK-LN----RGDEIS----PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKN   98 (139)
Q Consensus        30 ~fv~~L~~~L~~~--Gi~vf~d~~-~~----~G~~i~----~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~   98 (139)
                      ++...+.++|+..  |+.+|...+ -.    ++..+.    +.=.++|++|+++|.++. ....+..+..|+..|.... 
T Consensus        20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g-   97 (162)
T 3ehd_A           20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG-   97 (162)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC-
Confidence            5778899999875  899988765 21    222333    334467999999999994 4457889999999998643 


Q ss_pred             hcCCEEEEEEE
Q 039252           99 KYGQIVVPVFY  109 (139)
Q Consensus        99 ~~~~~iiPV~~  109 (139)
                         .+|+.+.-
T Consensus        98 ---kPVi~~~~  105 (162)
T 3ehd_A           98 ---IPVVALYT  105 (162)
T ss_dssp             ---CCEEEECC
T ss_pred             ---CEEEEEEc
Confidence               35665543

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=86.02  E-value=2.6  Score=29.67  Aligned_cols=85  Identities=9%  Similarity=0.087  Sum_probs=56.6

Q ss_pred             eEEEecc--cCcchhhHHHHHHHHHhcC--CceEEeeCC--C--------CCC--------CCcchhhHHhhhcCcEEEE
Q 039252           17 DVFLSFR--GKDVRHNFISHLNAALCRK--KIVTFNDDK--L--------NRG--------DEISPSLSSAIEGSKISIV   74 (139)
Q Consensus        17 DVFISys--~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~--~--------~~G--------~~i~~~i~~aI~~S~~~I~   74 (139)
                      -||+.=.  +.+ ..++...+.+.|++.  |+.+|.-.+  .        ..|        ..|.+.=.++|++|+++|+
T Consensus         9 kIYLAGP~F~~~-~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA   87 (167)
T 1s2d_A            9 KIYLGSPFYSDA-QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVF   87 (167)
T ss_dssp             EEEEECCCSSHH-HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             EEEEECCCCCHH-HHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            4666532  222 235778999999999  888887654  2        111        1223344567999999999


Q ss_pred             EEcCCCCCchhHHHHHHHHHHHHhhcCCEEEEE
Q 039252           75 IFSKGYASSRWCLNELVKILESKNKYGQIVVPV  107 (139)
Q Consensus        75 vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV  107 (139)
                      ++.+ -..+.=+..|+..|....+    +|+-+
T Consensus        88 ~ldg-~~~D~GTa~EiGyA~algK----PVv~l  115 (167)
T 1s2d_A           88 LYDM-DQLDDGSAFXIGFMRAMHK----PVILV  115 (167)
T ss_dssp             EEES-SSCCHHHHHHHHHHHHTTC----CEEEE
T ss_pred             ECCC-CCCCCCceeehhhHhhCCC----eEEEE
Confidence            9986 3356778899999887433    56555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	8e-19
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	4e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 8e-19
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTF-NDDKLNRGDEISPSLSSAIEGSKISI 73
           ++  F+S+ G D      + L   L ++ +    ++     G  I  ++ + IE S  SI
Sbjct: 12  QFHAFISYSGHD-SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 74  VIFSKGYASSRWCLNELVKILESKNKYGQIV-VPVFYLVDPSDVRNQT 120
            + S  +  S WC  EL     +    G    + +     P      +
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 4e-18
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 15  KYDVFLSFRGKD---VRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKI 71
            YD F+S+  +D   V +  +  L       K+   +      G  I  ++  +IE S  
Sbjct: 5   CYDAFVSYSERDAYWVENLMVQELENFNPPFKLC-LHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 72  SIVIFSKGYASSRWCLNELVKIL-ESKNKYGQIVVPVFYLVDPSDVRNQ 119
           ++ + S+ +  S WC  EL        ++     + +           Q
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.93
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.91
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	96.08
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	93.45
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	88.36
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	84.6
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	83.48
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	80.63
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	80.03

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-27  Score=170.70  Aligned_cols=104  Identities=18%  Similarity=0.337  Sum_probs=93.2

Q ss_pred             CCCCCCCCceeeEEEecccCcchhhHH-HHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCc
Q 039252            6 SSINMIPHTKYDVFLSFRGKDVRHNFI-SHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASS   83 (139)
Q Consensus         6 ~~~~~~~~~~yDVFISys~~D~~~~fv-~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S   83 (139)
                      |.-.+.++++|||||||+++|..  || ..|...|+++|+++|+|.+ +.||+.+.++|.++|++|+++|+|+||+|+.|
T Consensus         3 pl~~~~~~~~yDvFisys~~D~~--~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s   80 (161)
T d1fyva_           3 PLEELQRNLQFHAFISYSGHDSF--WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS   80 (161)
T ss_dssp             CSTTSSSCCCEEEEEECCGGGHH--HHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHH
T ss_pred             ChhHcCCCCeeEEEEecChhHHH--HHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccC
Confidence            44456688999999999999964  66 6799999999999999999 99999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH-hhcCCEEEEEEEec
Q 039252           84 RWCLNELVKILESK-NKYGQIVVPVFYLV  111 (139)
Q Consensus        84 ~wc~~El~~a~~~~-~~~~~~iiPV~~~v  111 (139)
                      +||..|+..|+++. ..+..++|||+++.
T Consensus        81 ~w~~~E~~~a~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          81 EWCHYELYFAHHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             TSHHHHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred             hHHHHHHHHHHHHHHHcCCCceeEEEEec
Confidence            99999999998765 44567999999963

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-26  Score=162.86  Aligned_cols=98  Identities=17%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             CCceeeEEEecccCcchhhHH-HHHHHHHhcC--CceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHH
Q 039252           12 PHTKYDVFLSFRGKDVRHNFI-SHLNAALCRK--KIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCL   87 (139)
Q Consensus        12 ~~~~yDVFISys~~D~~~~fv-~~L~~~L~~~--Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~   87 (139)
                      +++.|||||||+++|..  || +.|...|++.  |+++|+|++ +.||+.+.++|.++|++|+++|+|+||+|++|+||.
T Consensus         2 ~~~~YDvFiSys~~D~~--~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERDAY--WVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGHH--HHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhhHH--HHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            67999999999999953  55 5799999864  999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-hhcCCEEEEEEEec
Q 039252           88 NELVKILESK-NKYGQIVVPVFYLV  111 (139)
Q Consensus        88 ~El~~a~~~~-~~~~~~iiPV~~~v  111 (139)
                      .|+..|+.+. ++++.++|||+++.
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~  104 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEP  104 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEecc
Confidence            9999987664 55678999999974

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.08  E-value=0.014  Score=39.39  Aligned_cols=73  Identities=11%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             cchhhHHHHHHHHHhcCCceEEeeCC--CCCCCCcchhhHHhhhcCcEEEEEEcC--CCCCchhHHHHHHHHHHHHh
Q 039252           26 DVRHNFISHLNAALCRKKIVTFNDDK--LNRGDEISPSLSSAIEGSKISIVIFSK--GYASSRWCLNELVKILESKN   98 (139)
Q Consensus        26 D~~~~fv~~L~~~L~~~Gi~vf~d~~--~~~G~~i~~~i~~aI~~S~~~I~vlS~--~~~~S~wc~~El~~a~~~~~   98 (139)
                      |.+.++.+.+.+.|++.|+.++...+  ......|.+.-.++|++|+.+|++++|  .-..++=+..|+..|....+
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            33346889999999999999997655  222334556666889999999999986  33456778999999987543

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.45  E-value=0.092  Score=32.02  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=43.7

Q ss_pred             ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcC
Q 039252           14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSK   78 (139)
Q Consensus        14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~   78 (139)
                      ...+|||..-++... ..+..|...|.+.|+++-+|..   +..+...+..|-..--.+++++.+
T Consensus         2 ~~~~V~i~~~g~~~~-~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCC
Confidence            356899999887654 7899999999999999999864   445666777665533334444443

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=88.36  E-value=1.8  Score=28.61  Aligned_cols=91  Identities=10%  Similarity=0.062  Sum_probs=56.8

Q ss_pred             eeeEEEecccC-cchhhHHHHHHHHHhcCC--ceEEeeCC--CC--------CCC--------CcchhhHHhhhcCcEEE
Q 039252           15 KYDVFLSFRGK-DVRHNFISHLNAALCRKK--IVTFNDDK--LN--------RGD--------EISPSLSSAIEGSKISI   73 (139)
Q Consensus        15 ~yDVFISys~~-D~~~~fv~~L~~~L~~~G--i~vf~d~~--~~--------~G~--------~i~~~i~~aI~~S~~~I   73 (139)
                      +.-|||+=.-- +...++.+.+.+.|+++|  +.+|...+  ..        .+.        .+...=.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            45567654211 223467889999999988  56664322  10        010        12223346899999999


Q ss_pred             EEEcCCCCCchhHHHHHHHHHHHHhhcCCEEEEEEEe
Q 039252           74 VIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYL  110 (139)
Q Consensus        74 ~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~  110 (139)
                      +++..... +.-+..|+..|....+    +||-+.-+
T Consensus        87 A~ldg~~~-D~GTa~EiG~A~a~gK----Pvi~~~~d  118 (167)
T d1s2da_          87 FLYDMDQL-DDGSAFEIGFMRAMHK----PVILVPFT  118 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHHTTC----CEEEEEEC
T ss_pred             EEeCCCCC-CccHHHHHHHHHHCCC----eEEEEecC
Confidence            99987653 4567889999987543    67665443

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.60  E-value=0.45  Score=28.44  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=40.5

Q ss_pred             eeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEc
Q 039252           15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFS   77 (139)
Q Consensus        15 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS   77 (139)
                      ..||||.--+.+. ...+..|...|.+.|+++-+|.+   +..+...+..|-..--.+++|+.
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG   62 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVIG   62 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC---CCCHHHHHHHHHhcCCCEEEEEc
Confidence            4689997755543 46889999999999999988854   33466666666554333444443

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=1.1  Score=27.49  Aligned_cols=62  Identities=10%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             eeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCC
Q 039252           16 YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYA   81 (139)
Q Consensus        16 yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~   81 (139)
                      ++|.|.-=+++ ...++..|.+.|...|+++.+|.+   +..+...+.+|-..---.++|+.++-+
T Consensus         8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~~---~~~l~~ki~~a~~~g~p~~iiiG~~E~   69 (110)
T d1qf6a1           8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGDKEV   69 (110)
T ss_dssp             SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECTTTG
T ss_pred             ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccCC---ccchhHHHHHHHHcCCCEEEEECchHH
Confidence            44655432222 346899999999999999999976   334555666665544456666666544

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=80.63  E-value=1.4  Score=28.94  Aligned_cols=77  Identities=12%  Similarity=-0.027  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHHhcC----CceEEeeCC-----CCCCC------------CcchhhHHhhhcCcEEEEEEcCCCCCchhHH
Q 039252           29 HNFISHLNAALCRK----KIVTFNDDK-----LNRGD------------EISPSLSSAIEGSKISIVIFSKGYASSRWCL   87 (139)
Q Consensus        29 ~~fv~~L~~~L~~~----Gi~vf~d~~-----~~~G~------------~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~   87 (139)
                      .++...+.+.|++.    |+.+|.-.+     ...+.            .+...=.++|++|+++|+++.... ...-+.
T Consensus        17 ~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD~via~ldg~~-~D~Gta   95 (156)
T d1f8ya_          17 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG   95 (156)
T ss_dssp             HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred             HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEEEEeCCCC-CCCCHH
Confidence            35788999999874    566665432     11111            123333678999999999987543 456678


Q ss_pred             HHHHHHHHHHhhcCCEEEEEEEe
Q 039252           88 NELVKILESKNKYGQIVVPVFYL  110 (139)
Q Consensus        88 ~El~~a~~~~~~~~~~iiPV~~~  110 (139)
                      .|+..|....+    +||-+.-+
T Consensus        96 ~EiG~A~a~gK----pvi~~~~~  114 (156)
T d1f8ya_          96 MELGYALSQGK----YVLLVIPD  114 (156)
T ss_dssp             HHHHHHHHTTC----EEEEEECG
T ss_pred             HHHHHHHHcCC----cEEEEecC
Confidence            89999987544    66665443

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.03  E-value=0.83  Score=27.40  Aligned_cols=57  Identities=18%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             eeeEEEecccCcchhhHHHHHHHHHhcC--CceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252           15 KYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI   75 (139)
Q Consensus        15 ~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v   75 (139)
                      ..||||..-+++. ...+..|.+.|.+.  |+++-+|..   +..+...+..|-. ++..+|++
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~---~~~l~kq~k~A~~~~~~~~iii   62 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL   62 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC---CCCHHHHHHHHHHhCCChhhhc
Confidence            5689998866654 46888899999765  999998854   3456667777655 45544444