Citrus Sinensis ID: 039261

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQYRWVSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRDSPLSGNQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHccccccHHccccHHHHHHHHHHHHHHHHccccccccccccccEcccccccccccccccccc
Coil and Loop (DISEMBL)
MASLRRAVINVHRILRSSAVanrssiasaspaasfetllrpqyrwvsnttqsldidlsndeKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNlenpdlwkwltgqeqppeavktnpvFSALHNKVMNnlnsyaspetrsepgqpwvrgwddfkkgrdsplsgnq
Flexible Loop (DISEMBL)
MASLRRAVINVHRIlrssavanrssiasaspaasfetllrpqyrwVSNTtqsldidlsndekkKRLFNRllyrskqrgflELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSyaspetrsepgqpwvrgwddfkkgrdsplsgnq
Low Complexity Region (SEG)
MASLRRAVINVHRILRSSAVanrssiasaspaasFETLLRPQYRWVSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRDSPLSGNQ
Disordered region (IsUnstruct)
*******VINVHRILR******************FETLLRPQYRWVSNTTQSLDIDL*****KKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTG*************F**********************************************
Disordered Region (DISOPRED)
***LR**VINVHRILRS***************************************************RLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNK*********************VRGWDDFKKG*********
Disordered Region (DISEMBL)
MASLRRAVINVHRILRSSAV************ASFETLLRPQYRWVSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSY**********QPWVRGWDDFKKG*********
Disordered Region (DISPRO)
**SLRRAVINVHRILRSS*****SSIAS***AASFETLLRPQYRWVSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYA**********P*VR*W*DF*KGR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQYRWVSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRDSPLSGNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
A8XYZ2	122	Succinate dehydrogenase a	N/A	no	0.412	0.614	0.389	8e-08
Q9NA72	119	Succinate dehydrogenase a	yes	no	0.412	0.630	0.376	1e-07
Q54B20	141	Succinate dehydrogenase a	yes	no	0.593	0.765	0.288	9e-07
Q5WWK6	79	Uncharacterized protein l	yes	no	0.335	0.772	0.419	1e-06
B6JZ70	143	Succinate dehydrogenase a	N/A	no	0.461	0.587	0.326	2e-06
Q5X4Y4	79	Uncharacterized protein l	yes	no	0.335	0.772	0.403	4e-06
P0CR32	175	Succinate dehydrogenase a	yes	no	0.467	0.485	0.294	3e-05
P0CR33	175	Succinate dehydrogenase a	N/A	no	0.467	0.485	0.294	3e-05
Q10440	139	Succinate dehydrogenase a	yes	no	0.620	0.812	0.261	0.0002
Q178L7	161	Succinate dehydrogenase a	N/A	no	0.516	0.583	0.32	0.0002

>sp|A8XYZ2|SDHF2_CAEBR Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis briggsae GN=CBG20928 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 69  RLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENP--DLWKWLTGQEQP 126
           RLLY+SK+RG LE D++LG + EE++  M E  +KA   ++N E+   DL+ +L+ ++ P
Sbjct: 38  RLLYQSKKRGILENDILLGNFAEENLKKMSEPELKAYDKLINGEHMEWDLFYYLSNKKTP 97

Query: 127 PEAVKTNPVFSALHNKV 143
           PE V+   V+  +   V
Sbjct: 98  PEDVEKCSVYQKVKKFV 114

Required for insertion of FAD cofactor into sdha-1, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains sdha-1 in a conformation that is susceptible to autocatalytic FAD attachment.
Caenorhabditis briggsae (taxid: 6238)

>sp|Q9NA72|SDHF2_CAEEL Succinate dehydrogenase assembly factor 2, mitochondrial OS=Caenorhabditis elegans GN=Y57A10A.29 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 69  RLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENP--DLWKWLTGQEQP 126
           RLLY+SK+RG LE D++LG + E+++  M E  +KA   ++N E+   DL+ +L+ ++ P
Sbjct: 35  RLLYQSKKRGILENDILLGDFAEQNLKKMSEPELKAYDKLINGEHMEWDLFYYLSNKKSP 94

Query: 127 PEAVKTNPVFSALHNKV 143
           PE V++  V+  +   V
Sbjct: 95  PEDVESCQVYQKVKKFV 111

Required for insertion of FAD cofactor into sdha-1, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains sdha-1 in a conformation that is susceptible to autocatalytic FAD attachment.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54B20|SDHF2_DICDI Succinate dehydrogenase assembly factor 2, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0293946 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 10/118 (8%)

Query: 25  SIASASPAASFETLLRPQYRWVSNTTQSLDIDLSNDEKKKRLFN----------RLLYRS 74
           SI     +  F T    +  + SN      I    DE K ++ N          +LLY+S
Sbjct: 4   SIKQIKSSIGFITTNTTRRNFCSNKIGGFTIKNVEDESKIKINNEISEIEKLRKKLLYQS 63

Query: 75  KQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKT 132
           K+RG LE DL+LG +   +IH + E+ ++    +L   +PD++ W+  + + PE  +T
Sbjct: 64  KERGMLENDLLLGSFATLNIHKLTESQLRDYNLLLQQPDPDIFNWILKKAEVPEEFET 121

Required for insertion of FAD cofactor into sdha, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains sdha in a conformation that is susceptible to autocatalytic FAD attachment.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5WWK6|Y1447_LEGPL Uncharacterized protein lpl1447 OS=Legionella pneumophila (strain Lens) GN=lpl1447 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 69  RLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPE 128
           RLL++ + RG LELDLVL K++   I  + EN +KA  ++L   +P+L+ WL G E+P +
Sbjct: 8   RLLWKCR-RGMLELDLVLQKFIANEIDRLTENQLKAFDNLLTHNDPNLYAWLMGHEEPEK 66

Query: 129 AV 130
            +
Sbjct: 67  EL 68

Legionella pneumophila (strain Lens) (taxid: 297245)

>sp|B6JZ70|SDHF2_SCHJY Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=emi5 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 61  EKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWL 120
           E +K L +RL+Y+S++RG LE DL+L  + +E++   +   +K   ++LN  + D+  W 
Sbjct: 48  ETEKLLRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADWDILYWC 107

Query: 121 TGQEQPPEAVKTNPVFSALHNKVMNNLNSYAS 152
           TG+ Q PE          L+++V+ +L  Y S
Sbjct: 108 TGERQAPE--------HWLNSRVLRDLKEYLS 131

Required for insertion of FAD cofactor into sdh1, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains sdh1 in a conformation that is susceptible to autocatalytic FAD attachment.

Schizosaccharomyces japonicus (strain yFS275 / FY16936) (taxid: 402676)

>sp|Q5X4Y4|Y1536_LEGPA Uncharacterized protein lpp1536 OS=Legionella pneumophila (strain Paris) GN=lpp1536 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 69  RLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPE 128
           RLL++ + RG LELDL+L K++   I  + EN +KA  ++L   +P L+ WL G E+P +
Sbjct: 8   RLLWKCR-RGMLELDLLLQKFIANEIDRLTENQLKAFDNLLTHNDPSLYAWLMGHEEPEK 66

Query: 129 AV 130
            +
Sbjct: 67  EL 68

Legionella pneumophila (strain Paris) (taxid: 297246)

>sp|P0CR32|SDHF2_CRYNJ Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=EMI5 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 61  EKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWL 120
           E +K L  RL+Y++++RG LE DL+L  +  + + +MD   +K    +L+  + D++ W 
Sbjct: 73  EDEKTLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDWDIFYWS 132

Query: 121 TGQEQPPEAVKTNPVFSALHNKVMN 145
             +  PP   K  P+   L     N
Sbjct: 133 VKKRDPPARWKGTPLLEKLQKHAKN 157

Required for insertion of FAD cofactor into SDH1, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains SDH1 in a conformation that is susceptible to autocatalytic FAD attachment.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CR33|SDHF2_CRYNB Succinate dehydrogenase assembly factor 2, mitochondrial OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=EMI5 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 61  EKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWL 120
           E +K L  RL+Y++++RG LE DL+L  +  + + +MD   +K    +L+  + D++ W 
Sbjct: 73  EDEKTLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDWDIFYWS 132

Query: 121 TGQEQPPEAVKTNPVFSALHNKVMN 145
             +  PP   K  P+   L     N
Sbjct: 133 VKKRDPPARWKGTPLLEKLQKHAKN 157

Required for insertion of FAD cofactor into SDH1, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains SDH1 in a conformation that is susceptible to autocatalytic FAD attachment.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q10440|SDHF2_SCHPO Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=emi5 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 17/130 (13%)

Query: 10  NVHRILRSSAVANRSSIASASPAASFETLLRPQYRWVSNTTQSLDIDLSNDEKKKRLFNR 69
           N+  +LRS+   NR                 PQ R+  +T   L     + E +  +  R
Sbjct: 9   NITTLLRSARCMNRM----------------PQLRF-EHTKGDLKRVNRSYETRDAMLAR 51

Query: 70  LLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEA 129
           L Y+S++RG LE DL+L  + ++ I     + ++    +L+  + D+  W +G+ + PE 
Sbjct: 52  LKYQSRKRGILETDLLLSNFAKDQIDKYPVSLLREYDQLLDEPDWDILYWCSGEREAPEK 111

Query: 130 VKTNPVFSAL 139
            K++ VF  L
Sbjct: 112 WKSSQVFKEL 121

Required for insertion of FAD cofactor into sdh1, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains sdh1 in a conformation that is susceptible to autocatalytic FAD attachment.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q178L7|SDHF2_AEDAE Succinate dehydrogenase assembly factor 2, mitochondrial OS=Aedes aegypti GN=AAEL005866 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 51  QSLDIDLSNDEKKKRL---FNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVD 107
           +SL I +  ++K + L    +RLLY+S++RG LE  L+L  +  +H+ SMD    K    
Sbjct: 50  KSLPIPIYKEKKNEPLQLQKSRLLYQSRKRGMLENGLLLSTFAAKHLESMDVKQTKLYDQ 109

Query: 108 VLNLENP--DLWKWLTGQEQPPEAVKTNPVFSALHNKVMN 145
           ++N+     D++ W TG  +P  A   N + + L + V N
Sbjct: 110 LINMPTNDWDIFYWATGV-KPTPAEYDNEIMALLKDHVKN 148

Required for insertion of FAD cofactor into Scs-fp, the catalytic subunit of succinate dehydrogenase (SDH). SDH is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). In is unclear whether it participates in the chemistry of FAD attachment (enzymatic function) or acts as a chaperone that maintains Scs-fp in a conformation that is susceptible to autocatalytic FAD attachment.

Aedes aegypti (taxid: 7159)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
359496253	187	PREDICTED: uncharacterized protein LOC10	1.0	0.973	0.705	4e-72
296088155	174	unnamed protein product [Vitis vinifera]	0.956	1.0	0.714	2e-69
255540023	188	conserved hypothetical protein [Ricinus	0.994	0.962	0.698	2e-68
317106611	188	JHL07K02.8 [Jatropha curcas]	0.994	0.962	0.693	2e-68
359496255	183	PREDICTED: uncharacterized protein LOC10	0.978	0.972	0.684	6e-68
21592766	188	unknown [Arabidopsis thaliana]	0.989	0.957	0.663	2e-66
15241359	188	uncharacterized protein [Arabidopsis tha	0.989	0.957	0.663	2e-66
224136360	186	predicted protein [Populus trichocarpa]	0.950	0.930	0.654	5e-65
297792415	185	hypothetical protein ARALYDRAFT_495170 [	0.972	0.956	0.652	2e-64
334188305	197	uncharacterized protein [Arabidopsis tha	0.989	0.913	0.632	2e-64

>gi|359496253|ref|XP_003635192.1| PREDICTED: uncharacterized protein LOC100259710 isoform 2 [Vitis vinifera]

 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 157/187 (83%), Gaps = 5/187 (2%)

Query: 1   MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLL-RPQYRWV----SNTTQSLDI 55
           M SLRR V+ +HRIL S+A+A R S+++ SP  S  TL+ RP++ W+    S++  S +I
Sbjct: 1   MGSLRRGVLGLHRILNSTAIAPRGSVSATSPIPSETTLVPRPRFNWICGFSSDSIHSPEI 60

Query: 56  DLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPD 115
           DLSN+E K+RLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMD NGIK+LV VL+LENPD
Sbjct: 61  DLSNEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDHNGIKSLVHVLDLENPD 120

Query: 116 LWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRD 175
           LWKWLTGQEQPPEAV  NPVF A+  KVMNNLNS+++PETR+ PG+PWVRGWDD KKGRD
Sbjct: 121 LWKWLTGQEQPPEAVSINPVFCAVREKVMNNLNSHSAPETRAMPGKPWVRGWDDIKKGRD 180

Query: 176 SPLSGNQ 182
           SP+SGNQ
Sbjct: 181 SPVSGNQ 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088155|emb|CBI35625.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/182 (71%), Positives = 150/182 (82%), Gaps = 8/182 (4%)

Query: 1   MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQYRWVSNTTQSLDIDLSND 60
           M SLRR V+ +HRIL S+A+A R S+++ SP  S ET L P       +  S +IDLSN+
Sbjct: 1   MGSLRRGVLGLHRILNSTAIAPRGSVSATSPIPS-ETTLVP-------SIHSPEIDLSNE 52

Query: 61  EKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWL 120
           E K+RLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMD NGIK+LV VL+LENPDLWKWL
Sbjct: 53  ESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDHNGIKSLVHVLDLENPDLWKWL 112

Query: 121 TGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRDSPLSG 180
           TGQEQPPEAV  NPVF A+  KVMNNLNS+++PETR+ PG+PWVRGWDD KKGRDSP+SG
Sbjct: 113 TGQEQPPEAVSINPVFCAVREKVMNNLNSHSAPETRAMPGKPWVRGWDDIKKGRDSPVSG 172

Query: 181 NQ 182
           NQ
Sbjct: 173 NQ 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540023|ref|XP_002511076.1| conserved hypothetical protein [Ricinus communis] gi|223550191|gb|EEF51678.1| conserved hypothetical protein [Ricinus communis]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/189 (69%), Positives = 150/189 (79%), Gaps = 8/189 (4%)

Query: 1   MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQYRWVS-------NTTQSL 53
           MAS RRAVIN  R+L SSA  N SSI S S +   ++  R +Y W +       N  ++L
Sbjct: 1   MASFRRAVINARRVLNSSATPNGSSIVSLS-STRIKSPFRSRYGWFARYSTVNDNDARAL 59

Query: 54  DIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLEN 113
           DIDLSNDE K+RLFNRLLYRS+QRGFLELDLVLGKWVE HIHSMDENGIKALV VL+LEN
Sbjct: 60  DIDLSNDESKRRLFNRLLYRSRQRGFLELDLVLGKWVEGHIHSMDENGIKALVHVLDLEN 119

Query: 114 PDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKG 173
           PDLWKWLTGQEQPPEAV  NPVFSA+ +K+MNNL+S+ASPETR+ PGQPWVRGWDD KK 
Sbjct: 120 PDLWKWLTGQEQPPEAVNINPVFSAVRDKIMNNLDSHASPETRAIPGQPWVRGWDDIKKN 179

Query: 174 RDSPLSGNQ 182
             SP+ GNQ
Sbjct: 180 PGSPVGGNQ 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106611|dbj|BAJ53118.1| JHL07K02.8 [Jatropha curcas]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 153/189 (80%), Gaps = 8/189 (4%)

Query: 1   MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQYRWVS-------NTTQSL 53
           MASLR+A+++ HR+L  SA  +RSSIA+  P     T  R QY W+S       + T+SL
Sbjct: 1   MASLRKALVSAHRVLNYSATLSRSSIATLPPIGG-RTPFRSQYGWLSPYSTVNDSETRSL 59

Query: 54  DIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLEN 113
           DIDLS++E K+RLFNRLLYRSKQRGFLELDLVLGKWVEEHI SMDENGIKALV +L+LEN
Sbjct: 60  DIDLSSEESKRRLFNRLLYRSKQRGFLELDLVLGKWVEEHISSMDENGIKALVHLLDLEN 119

Query: 114 PDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKG 173
           PDLWKWLT QEQPPEAV TNPVFSA+ +KVMNNLN +A+PETR+ PGQPWVRGWDD KK 
Sbjct: 120 PDLWKWLTCQEQPPEAVSTNPVFSAVRDKVMNNLNRHAAPETRAIPGQPWVRGWDDIKKS 179

Query: 174 RDSPLSGNQ 182
             SP++GNQ
Sbjct: 180 PGSPVAGNQ 188

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496255|ref|XP_002277790.2| PREDICTED: uncharacterized protein LOC100259710 isoform 1 [Vitis vinifera]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 153/187 (81%), Gaps = 9/187 (4%)

Query: 1   MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLL-RPQYRWV----SNTTQSLDI 55
           M SLRR V+ +HRIL S+A+A R S+++ SP  S  TL+ RP++ W+    S++  S +I
Sbjct: 1   MGSLRRGVLGLHRILNSTAIAPRGSVSATSPIPSETTLVPRPRFNWICGFSSDSIHSPEI 60

Query: 56  DLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPD 115
           DLSN+E K+RLFNR    SKQRGFLELDLVLGKWVEEHIHSMD NGIK+LV VL+LENPD
Sbjct: 61  DLSNEESKRRLFNR----SKQRGFLELDLVLGKWVEEHIHSMDHNGIKSLVHVLDLENPD 116

Query: 116 LWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRD 175
           LWKWLTGQEQPPEAV  NPVF A+  KVMNNLNS+++PETR+ PG+PWVRGWDD KKGRD
Sbjct: 117 LWKWLTGQEQPPEAVSINPVFCAVREKVMNNLNSHSAPETRAMPGKPWVRGWDDIKKGRD 176

Query: 176 SPLSGNQ 182
           SP+SGNQ
Sbjct: 177 SPVSGNQ 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592766|gb|AAM64715.1| unknown [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 149/187 (79%), Gaps = 7/187 (3%)

Query: 3   SLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQY----RWVSNTT---QSLDI 55
           + R+A+INVHRI+RS+AV  RSSI  A+   S+  + R       R+    T   Q+ DI
Sbjct: 2   ATRKALINVHRIIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDI 61

Query: 56  DLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPD 115
           DLSN+E K+R  NRLLYRSKQRGFLELDLVLG WVEE+++SMDENG+K+L+ VLNLENPD
Sbjct: 62  DLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLENPD 121

Query: 116 LWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRD 175
           LWKWLT QEQPPEAV +NPVFSALH KVM NLN +A+PETR+  GQPWVRGWDDFK+GRD
Sbjct: 122 LWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRD 181

Query: 176 SPLSGNQ 182
           +P+SGNQ
Sbjct: 182 TPISGNQ 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241359|ref|NP_199917.1| uncharacterized protein [Arabidopsis thaliana] gi|9758251|dbj|BAB08750.1| unnamed protein product [Arabidopsis thaliana] gi|98960953|gb|ABF58960.1| At5g51040 [Arabidopsis thaliana] gi|110738284|dbj|BAF01071.1| hypothetical protein [Arabidopsis thaliana] gi|332008641|gb|AED96024.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/187 (66%), Positives = 149/187 (79%), Gaps = 7/187 (3%)

Query: 3   SLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQY----RWVSNTT---QSLDI 55
           + R+A+INVHRI+RS+AV  RSSI  A+   S+  + R       R+    T   Q+ DI
Sbjct: 2   ATRKALINVHRIIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDI 61

Query: 56  DLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPD 115
           DLSN+E K+R  NRLLYRSKQRGFLELDLVLG WVEE+++SMDENG+K+L+ VLNLENPD
Sbjct: 62  DLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLENPD 121

Query: 116 LWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRD 175
           LWKWLT QEQPPEAV +NPVFSALH KVM NLN +A+PETR+  GQPWVRGWDDFK+GRD
Sbjct: 122 LWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFKRGRD 181

Query: 176 SPLSGNQ 182
           +P+SGNQ
Sbjct: 182 APISGNQ 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136360|ref|XP_002322310.1| predicted protein [Populus trichocarpa] gi|222869306|gb|EEF06437.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 146/191 (76%), Gaps = 18/191 (9%)

Query: 1   MASLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQYRWVS---------NTTQ 51
           MASLRRA++ VHRIL S+   N  S+ S          LR QY   S         N   
Sbjct: 5   MASLRRALVTVHRILNSTTTTNHISVTSP---------LRSQYGLFSRYSTLNKNDNKKP 55

Query: 52  SLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNL 111
           SLD +LSN+E K+RL NRLLYRS+QRGFLELDLVLGKWVEEHI+SMDENG+KAL+DVL+L
Sbjct: 56  SLDFELSNEESKRRLCNRLLYRSRQRGFLELDLVLGKWVEEHIYSMDENGVKALIDVLDL 115

Query: 112 ENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFK 171
           ENPDLWKWLTGQEQPPEAV  NPVFSA+ +K+MNNL+S+A+PETR+ PGQPWVRGWDD K
Sbjct: 116 ENPDLWKWLTGQEQPPEAVSINPVFSAVRDKIMNNLSSHAAPETRAIPGQPWVRGWDDIK 175

Query: 172 KGRDSPLSGNQ 182
           K   SP++GNQ
Sbjct: 176 KSAGSPVAGNQ 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792415|ref|XP_002864092.1| hypothetical protein ARALYDRAFT_495170 [Arabidopsis lyrata subsp. lyrata] gi|297309927|gb|EFH40351.1| hypothetical protein ARALYDRAFT_495170 [Arabidopsis lyrata subsp. lyrata]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/187 (65%), Positives = 146/187 (78%), Gaps = 10/187 (5%)

Query: 3   SLRRAVINVHRILRSSAVANRSSIASASPAASFETLLR----PQYRWVSNTT---QSLDI 55
           + RRA+INVHRI+RS+AV  R S+    PAA+   + R       R+    T   Q+ DI
Sbjct: 2   ATRRALINVHRIIRSTAVVGRRSVI---PAAANRIIFRNGVDSGTRFFCGNTASAQNFDI 58

Query: 56  DLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPD 115
           DLSN+E K+R  NRLLYRSKQRGFLELDLVLG WVEE++ SMDENG+K+L+ VLNLENPD
Sbjct: 59  DLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVDSMDENGVKSLIHVLNLENPD 118

Query: 116 LWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRGWDDFKKGRD 175
           LWKWLT QEQPPE V +NPVFSALH KVM NLN +A+PETR+  GQPWV+GWDDFK+GRD
Sbjct: 119 LWKWLTEQEQPPEEVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVKGWDDFKRGRD 178

Query: 176 SPLSGNQ 182
           +P+SGNQ
Sbjct: 179 APISGNQ 185

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188305|ref|NP_001190509.1| uncharacterized protein [Arabidopsis thaliana] gi|332008643|gb|AED96026.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 149/196 (76%), Gaps = 16/196 (8%)

Query: 3   SLRRAVINVHRILRSSAVANRSSIASASPAASFETLLRPQY----RWVSNTT---QSLDI 55
           + R+A+INVHRI+RS+AV  RSSI  A+   S+  + R       R+    T   Q+ DI
Sbjct: 2   ATRKALINVHRIIRSTAVVGRSSIIPAAANRSYPIIFRNGVDLGARFFCENTASAQNFDI 61

Query: 56  DLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNL---- 111
           DLSN+E K+R  NRLLYRSKQRGFLELDLVLG WVEE+++SMDENG+K+L+ VLNL    
Sbjct: 62  DLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLVESE 121

Query: 112 -----ENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQPWVRG 166
                ENPDLWKWLT QEQPPEAV +NPVFSALH KVM NLN +A+PETR+  GQPWVRG
Sbjct: 122 ATKLLENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRG 181

Query: 167 WDDFKKGRDSPLSGNQ 182
           WDDFK+GRD+P+SGNQ
Sbjct: 182 WDDFKRGRDAPISGNQ 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
DICTYBASE|DDB_G0293946	141	DDB_G0293946 "DUF339 family pr	0.527	0.680	0.288	4.7e-09
UNIPROTKB|B6JZ70	143	emi5 "Succinate dehydrogenase	0.489	0.622	0.326	2.6e-08
UNIPROTKB|Q0C0Q7	87	HNE_1986 "TPR repeat protein"	0.390	0.816	0.333	4.2e-08
UNIPROTKB|Q178L7	161	AAEL005866 "Succinate dehydrog	0.576	0.652	0.297	1.4e-07
UNIPROTKB|Q2GFC9	98	ECH_1069 "TPR repeat protein"	0.434	0.806	0.308	3.8e-07
TIGR_CMR|ECH_1069	98	ECH_1069 "TPR repeat protein"	0.434	0.806	0.308	3.8e-07
UNIPROTKB|Q5LTZ4	85	SPO1266 "TPR repeat family pro	0.368	0.788	0.362	4.8e-07
TIGR_CMR|SPO_1266	85	SPO_1266 "TPR repeat family pr	0.368	0.788	0.362	4.8e-07
POMBASE|SPAC12B10.06c	139	emi5 "succinate dehydrogenase	0.620	0.812	0.269	1e-06
UNIPROTKB|P0CR32	175	EMI5 "Succinate dehydrogenase	0.467	0.485	0.294	1.9e-06

DICTYBASE|DDB_G0293946 DDB_G0293946 "DUF339 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 28/97 (28%), Positives = 55/97 (56%)

Query:    46 VSNTTQSLDIDLSNDEKK-KRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKA 104
             + N      I ++N+  + ++L  +LLY+SK+RG LE DL+LG +   +IH + E+ ++ 
Sbjct:    34 IKNVEDESKIKINNEISEIEKLRKKLLYQSKERGMLENDLLLGSFATLNIHKLTESQLRD 93

Query:   105 LVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHN 141
                +L   +PD++ W+  + + PE  +T  +    H+
Sbjct:    94 YNLLLQQPDPDIFNWILKKAEVPEEFETEVLKLVQHH 130

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0018293 "protein-FAD linkage" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

UNIPROTKB|B6JZ70 emi5 "Succinate dehydrogenase assembly factor 2, mitochondrial" [Schizosaccharomyces japonicus yFS275 (taxid:402676)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 32/98 (32%), Positives = 56/98 (57%)

Query:    55 IDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENP 114
             +D S  E +K L +RL+Y+S++RG LE DL+L  + +E++   +   +K   ++LN  + 
Sbjct:    43 VDRSK-ETEKLLRSRLVYQSRKRGILETDLILSGFAKEYLSKYNVELLKEYDNLLNEADW 101

Query:   115 DLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYAS 152
             D+  W TG+ Q PE          L+++V+ +L  Y S
Sbjct:   102 DILYWCTGERQAPE--------HWLNSRVLRDLKEYLS 131

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|Q0C0Q7 HNE_1986 "TPR repeat protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 24/72 (33%), Positives = 46/72 (63%)

Query:    68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPP 127
             ++L +R+ +RGF ELDL++G + ++ + SM ++G+     +L++ + +++ WL GQE  P
Sbjct:     7 SKLKFRAWRRGFRELDLLMGSFADQSLESMSQDGLDEFERLLDVPDWEIFAWLVGQEPVP 66

Query:   128 EAVKTNPVFSAL 139
             +  K  PV   L
Sbjct:    67 DKHK-GPVLDQL 77

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q178L7 AAEL005866 "Succinate dehydrogenase assembly factor 2, mitochondrial" [Aedes aegypti (taxid:7159)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 33/111 (29%), Positives = 57/111 (51%)

Query:    40 RPQYRWVSNTTQSLDIDLSNDEKKKRLF---NRLLYRSKQRGFLELDLVLGKWVEEHIHS 96
             +P    +    +SL I +  ++K + L    +RLLY+S++RG LE  L+L  +  +H+ S
Sbjct:    39 KPPTPMIDLEDKSLPIPIYKEKKNEPLQLQKSRLLYQSRKRGMLENGLLLSTFAAKHLES 98

Query:    97 MDENGIKALVDVLNLENPD--LWKWLTGQEQPPEAVKTNPVFSALHNKVMN 145
             MD    K    ++N+   D  ++ W TG +  P A   N + + L + V N
Sbjct:    99 MDVKQTKLYDQLINMPTNDWDIFYWATGVKPTP-AEYDNEIMALLKDHVKN 148

GO:0005739 "mitochondrion" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

UNIPROTKB|Q2GFC9 ECH_1069 "TPR repeat protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 25/81 (30%), Positives = 46/81 (56%)

Query:    53 LDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLE 112
             ++I++ ++   KR   RLLYRS  RG  E+D++LG +    IH +    +     ++N  
Sbjct:     1 MNINVMDELLVKR--KRLLYRSLHRGCKEMDIILGNFALHCIHLLSSKDVDEYEKIVNTS 58

Query:   113 NPDLWKWLTGQEQPPEAVKTN 133
             +  L+K++TG+E  P+ +  N
Sbjct:    59 DYQLYKYITGEELIPQYLDNN 79

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_1069 ECH_1069 "TPR repeat protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 25/81 (30%), Positives = 46/81 (56%)

Query:    53 LDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLE 112
             ++I++ ++   KR   RLLYRS  RG  E+D++LG +    IH +    +     ++N  
Sbjct:     1 MNINVMDELLVKR--KRLLYRSLHRGCKEMDIILGNFALHCIHLLSSKDVDEYEKIVNTS 58

Query:   113 NPDLWKWLTGQEQPPEAVKTN 133
             +  L+K++TG+E  P+ +  N
Sbjct:    59 DYQLYKYITGEELIPQYLDNN 79

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LTZ4 SPO1266 "TPR repeat family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query:    61 EKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENP-DLWKW 119
             E ++    R+  RS +RG  E+DL+L  + +  I +MD   +  L D L  EN  DL++W
Sbjct:     3 ESRETRIKRMRMRSMRRGIKEMDLILSAYADRSIEAMDAGALD-LYDALLHENDQDLYQW 61

Query:   120 LTGQEQPPE 128
             +TGQ   P+
Sbjct:    62 VTGQVSAPD 70

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1266 SPO_1266 "TPR repeat family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 25/69 (36%), Positives = 39/69 (56%)

Query:    61 EKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENP-DLWKW 119
             E ++    R+  RS +RG  E+DL+L  + +  I +MD   +  L D L  EN  DL++W
Sbjct:     3 ESRETRIKRMRMRSMRRGIKEMDLILSAYADRSIEAMDAGALD-LYDALLHENDQDLYQW 61

Query:   120 LTGQEQPPE 128
             +TGQ   P+
Sbjct:    62 VTGQVSAPD 70

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC12B10.06c emi5 "succinate dehydrogenase subunit Emi5 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 31/115 (26%), Positives = 57/115 (49%)

Query:    41 PQYRWVSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDEN 100
             PQ R+  +T   L     + E +  +  RL Y+S++RG LE DL+L  + ++ I     +
Sbjct:    24 PQLRF-EHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDLLLSNFAKDQIDKYPVS 82

Query:   101 GIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLN-SYASPE 154
              ++    +L+  + D+  W +G+ + PE  K++ VF  L     +  N +   PE
Sbjct:    83 LLREYDQLLDEPDWDILYWCSGEREAPEKWKSSQVFKELSKYCRSQRNHTLRMPE 137

GO:0005739 "mitochondrion" evidence=IDA

GO:0005749 "mitochondrial respiratory chain complex II" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISO;ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISO

GO:0008177 "succinate dehydrogenase (ubiquinone) activity" evidence=ISO

UNIPROTKB|P0CR32 EMI5 "Succinate dehydrogenase assembly factor 2, mitochondrial" [Cryptococcus neoformans var. neoformans JEC21 (taxid:214684)]

 Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query:    61 EKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWL 120
             E +K L  RL+Y++++RG LE DL+L  +  + + +MD   +K    +L+  + D++ W 
Sbjct:    73 EDEKTLRARLIYQTRKRGTLETDLILSTFARDELPNMDFEEMKQFDKLLDEPDWDIFYWS 132

Query:   121 TGQEQPPEAVKTNPVFSALHNKVMN 145
               +  PP   K  P+   L     N
Sbjct:   133 VKKRDPPARWKGTPLLEKLQKHAKN 157

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006121 "mitochondrial electron transport, succinate to ubiquinone" evidence=ISS

GO:0018293 "protein-FAD linkage" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	182
pfam03937	51	pfam03937, Sdh5, Flavinator of succinate dehydroge	2e-17
COG2938	94	COG2938, COG2938, Uncharacterized conserved protei	6e-15

>gnl|CDD|202817 pfam03937, Sdh5, Flavinator of succinate dehydrogenase

 Score = 71.7 bits (177), Expect = 2e-17
 Identities = 24/51 (47%), Positives = 38/51 (74%)

Query: 72  YRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTG 122
           +RS +RG LELDL+LG++ + H+ ++ E  + A   +L+LE+PDL+ WLTG
Sbjct: 1   WRSWRRGMLELDLLLGRFADAHLDTLSEEELDAFERLLDLEDPDLFDWLTG 51

This family of uncharacterized proteins. Based on personal observation it was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true.This family is now found to be a highly conserved mitochondrial protein, Sdh5. Both yeast and human Sdh5 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Length = 51

>gnl|CDD|225489 COG2938, COG2938, Uncharacterized conserved protein [Function unknown]

 Score = 66.5 bits (163), Expect = 6e-15
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 59  NDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWK 118
           +D+ +K    RL +RS+ RG  ELDL+LG + E+   S+ +  +     +L  E+ DL+ 
Sbjct: 10  DDDARKA---RLRWRSR-RGMRELDLILGPFAEKEFDSLSDEELDEFERLLECEDNDLFN 65

Query: 119 WLTGQEQPPEA 129
           W+ G  +PP+A
Sbjct: 66  WIMGHGEPPDA 76

Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG3326	154	consensus Uncharacterized conserved protein [Funct	99.95
PF03937	74	Sdh5: Flavinator of succinate dehydrogenase; Inter	99.95
COG2938	94	Uncharacterized conserved protein [Function unknow	99.93
PRK10878	72	hypothetical protein; Provisional	99.85

>KOG3326 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=2.6e-28  Score=197.20  Aligned_cols=145  Identities=29%  Similarity=0.406  Sum_probs=119.8

Q ss_pred             hhhhhhcCCcccccccccccCCCcccccccccccccc-ccccccccCCCCCcHHHHHHHHHHHHHHhhccchhHHHHhHH
Q 039261            9 INVHRILRSSAVANRSSIASASPAASFETLLRPQYRW-VSNTTQSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLG   87 (182)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~~~~~~s~~E~krrl~kRL~wRc~rRGmlELDLLLg   87 (182)
                      +++||.++.+++...+++++++..+.+..+|+..--. +....+....+.++.|.||   +||+|||++|||+|+|||||
T Consensus         4 ~~~~~~~~~s~~~~~~~~~p~~a~t~~r~i~r~~~~~~~~~~~~~~~r~~e~~etkr---aRLlYqSrKRGiLEnDLLLs   80 (154)
T KOG3326|consen    4 INMHRSRSLSNLKGRSSTSPAAANTSYRIIFRYDDPDENLPSPEYPKRPNEPLETKR---ARLLYQSRKRGILENDLLLS   80 (154)
T ss_pred             hhhHHHHHhhhhcccCCCCchhhccccceeeeCCCCcccccCCcccCCCCchhHHHH---HHHHHHHhhcchhHHHHHHH
Confidence            7889999999999888888766555444444331111 2223334556677778877   59999999999999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhcCC--CHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCC
Q 039261           88 KWVEEHIHSMDENGIKALVDVLNLE--NPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETR  156 (182)
Q Consensus        88 ~F~~~~l~~Lse~el~~Fe~LLd~e--D~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~~~~~~~~e~r  156 (182)
                      .|+++|+.+|+++|+.+|++||+.+  |||||+|+++++++|+.++++++|+.|.++++++...|..+.+.
T Consensus        81 ~Fa~~~l~~m~e~~l~~YD~LiN~~~~dWDi~YWaTe~kp~Pe~~~s~~V~~~L~e~v~n~~r~~~lr~pd  151 (154)
T KOG3326|consen   81 NFAAKNLKKMSEEQLKEYDQLINEESNDWDIYYWATETKPPPEKVESSEVFKLLKEFVKNKERVHRLRMPD  151 (154)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHhcCCcCCchhhhhhccCCCCchhhhhHHHHHHHHHHHHhhhhcccccCcc
Confidence            9999999999999999999999998  99999999999999999999999999999999987777776644

>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []

Probab=99.95  E-value=6.7e-28  Score=173.51  Aligned_cols=73  Identities=44%  Similarity=0.884  Sum_probs=64.8

Q ss_pred             HHHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH
Q 039261           67 FNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVM  144 (182)
Q Consensus        67 ~kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir  144 (182)
                      ++||+|||+||||+|||+|||+|+++++++|+++|+++|+.||+++|+|||+|++|+++||     +...+.|+++|+
T Consensus         2 ~kRl~~r~~rRG~~ElDllL~~f~~~~~~~l~~~el~~fe~lL~~~D~dL~~wl~g~~~p~-----~~~~~~li~~ir   74 (74)
T PF03937_consen    2 RKRLRWRCKRRGMLELDLLLGRFADAHLDSLSEEELDAFERLLDLEDPDLYDWLMGREEPE-----DPELAALIEKIR   74 (74)
T ss_dssp             HHHHHHHHSS-SSHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHTS-HHHHHHHHCTSSEES-----CHHHHHHHHHHH
T ss_pred             cHHHHHHhhcccHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCC-----ChhHHHHHHHhC
Confidence            4689999999999999999999999999999999999999999999999999999996666     577888888875

YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.

>COG2938 Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=4.1e-26  Score=172.66  Aligned_cols=73  Identities=32%  Similarity=0.712  Sum_probs=67.3

Q ss_pred             HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHh
Q 039261           68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNN  146 (182)
Q Consensus        68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~  146 (182)
                      +||+|||| |||+|||+|||+|+++|+++||++|+++|++||+++|+|||+|++|+.+||     +.....|+.+|++.
T Consensus        16 ~RL~~rsr-RGmrElDlil~~Fae~~~~~lsd~el~~f~~LLe~~D~dL~~Wi~g~~~~~-----~~~~~~mv~~I~~~   88 (94)
T COG2938          16 ARLRWRSR-RGMRELDLILGPFAEKEFDSLSDEELDEFERLLECEDNDLFNWIMGHGEPP-----DAELTPMVRKIQAR   88 (94)
T ss_pred             HHHHHHHH-hccHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCcHHHHHHHhCCCCCC-----cHHHHHHHHHHHHH
Confidence            37999996 999999999999999999999999999999999999999999999999999     56677777777753

>PRK10878 hypothetical protein; Provisional

Probab=99.85  E-value=4.6e-21  Score=138.74  Aligned_cols=62  Identities=19%  Similarity=0.520  Sum_probs=60.8

Q ss_pred             hhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q 039261           79 FLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMN  145 (182)
Q Consensus        79 mlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~  145 (182)
                      |+|||+|||+|++++|.+||++|++.|++||+++|+|||+|+||+.+||     |+.++.|+++|++
T Consensus         1 m~ElDlll~~F~~~~~~~l~~~e~~~Fe~LL~~~D~dL~~W~~g~~~p~-----d~~l~~iV~~Ir~   62 (72)
T PRK10878          1 MRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPA-----DAELERMVRLIQT   62 (72)
T ss_pred             CchHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCC-----CHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999     8999999999995

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
2lm4_A	109	Succinate dehydrogenase assembly factor 2, mitoch;	2e-23
1puz_A	82	Conserved hypothetical protein; NMA1147, MR19, str	2e-21
1x6i_A	91	Hypothetical protein YGFY; structural genomics, tr	3e-20
2jr5_A	94	UPF0350 protein VC_2471; structure, structural gen	2e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae} Length = 109

 Score = 87.9 bits (218), Expect = 2e-23
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 51  QSLDIDLSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLN 110
            S  I  +N+   K+   RL+Y+S++RG LE DL+L  +  +++  M+E  ++    +LN
Sbjct: 8   HSHMIKRTNEPLDKKR-ARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLN 66

Query: 111 LENPDLWKWLTGQEQP---PEAVKTNPVFSALHNKVMN 145
             + D++ W T   +    P+    + +   L     N
Sbjct: 67  ELDWDIYYWATKNFKTSPLPDKWANSKLLKQLQEFSEN 104

>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1 Length = 82

 Score = 82.3 bits (204), Expect = 2e-21
 Identities = 16/83 (19%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 59  NDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWK 118
            D+  KR   ++ ++++ RG LELDL+ G+++E+    + +  +    ++L  ++ +L  
Sbjct: 4   FDDIAKR---KIRFQTR-RGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLA 59

Query: 119 WLTGQEQPPEAVKTNPVFSALHN 141
            + G  +  +     P+   +  
Sbjct: 60  LINGHSETDKGHLI-PMLEKIRR 81

>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A Length = 91

 Score = 79.3 bits (196), Expect = 3e-20
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 65  RLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQE 124
               R+ +  + RG  ELD+ +  + E    S+ ++  +  + +L  ++PDL+ WL    
Sbjct: 7   NNKARIHWACR-RGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHG 65

Query: 125 QPPEAVKTNPVFSALHNKVMN 145
           +P +A +   +   +  +   
Sbjct: 66  KPADA-ELEMMVRLIQTRNRE 85

>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae} Length = 94

 Score = 77.4 bits (191), Expect = 2e-19
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 57  LSNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDL 116
           +   E+K R+     +  + RG LELD+V+  + EE   S+ E+     V +L  ++PDL
Sbjct: 1   MYTAEQKARI----KWACR-RGMLELDVVIMPFFEECFDSLTESEQDDFVALLESDDPDL 55

Query: 117 WKWLTGQEQPPEA 129
           + W+ G  +    
Sbjct: 56  FAWVMGHGRCENL 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-08
 Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 37/143 (25%)

Query: 30  SPAASFETLLRPQYRWVSNTTQSLD----IDLSNDEKKKRLFNRLLYRSKQRGFLELDLV 85
           SP    E L +  Y+   N T   D    I L     +  L   L  +  +   L L  V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 86  LGKWVEEHIHSMDENGIKALV--------DVLN--------LENPD-----------LWK 118
                 +  ++ +    K L+        D L+        L++             L K
Sbjct: 254 ---QNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 119 WLTGQEQ--PPEAVKTNPVFSAL 139
           +L  + Q  P E + TNP   ++
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSI 332

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 34/159 (21%)

Query: 35  FETLLRPQYRWVSNTTQSLDIDLSND-----EKKKRLFN-------RLLYRSKQRGFLEL 82
            E +LR  Y+++ +  ++     S       E++ RL+N         + R +   +L+L
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--YLKL 140

Query: 83  DLVL-----GKWVEEHIHSMDENGIKALV-DVLN-----LENPDLWKWLT-GQEQPPEAV 130
              L      K V   I  +  +G   +  DV        +      WL       PE V
Sbjct: 141 RQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 131 KTNPVFSALHNKVMNNLNSYA----SPETRSEPGQPWVR 165
                   L  ++  N  S +    + + R    Q  +R
Sbjct: 199 LEM--LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	182
1x6i_A	91	Hypothetical protein YGFY; structural genomics, tr	99.95
2lm4_A	109	Succinate dehydrogenase assembly factor 2, mitoch;	99.94
2jr5_A	94	UPF0350 protein VC_2471; structure, structural gen	99.94
1puz_A	82	Conserved hypothetical protein; NMA1147, MR19, str	99.94

>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A

Probab=99.95  E-value=8e-28  Score=178.81  Aligned_cols=74  Identities=20%  Similarity=0.521  Sum_probs=69.1

Q ss_pred             HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 039261           68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNL  147 (182)
Q Consensus        68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~~  147 (182)
                      +||+||| ||||+|||||||+|+++|+++||++|+++|+.||+++|+|||+|++|+++||     ++.+..|+++|++..
T Consensus        10 ~RL~~rs-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~w~~g~~~~p-----~~~~~~l~~~I~~~~   83 (91)
T 1x6i_A           10 ARIHWAC-RRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPA-----DAELEMMVRLIQTRN   83 (91)
T ss_dssp             HHHHHHT-CCSSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSCHHHHHHHHTTSSBCS-----SHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHH
Confidence            4799999 9999999999999999999999999999999999999999999999999999     577888888888543

>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-27  Score=183.41  Aligned_cols=84  Identities=26%  Similarity=0.474  Sum_probs=72.9

Q ss_pred             CcHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCC---CCCCCCCCCCH
Q 039261           58 SNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQ---EQPPEAVKTNP  134 (182)
Q Consensus        58 s~~E~krrl~kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~---~~pPe~~~~d~  134 (182)
                      .+.+.++   +||+|||+||||+|||||||+|+++++++||++|+++|+.||+++|+|||+|++|+   +++|+++...+
T Consensus        17 e~~~~rr---~RL~~rs~rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~wl~g~~~~~~~P~~~~~~~   93 (109)
T 2lm4_A           17 EPLDKKR---ARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNFKTSPLPDKWANSK   93 (109)
T ss_dssp             SCHHHHH---HHHHHHHSCCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHTTCTTTSCCCHHHHTCH
T ss_pred             CChHHHH---HHHHHHHhcccHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCCCCCchhhHHH
Confidence            3455554   49999999999999999999999999999999999999999999999999999998   78887764347


Q ss_pred             HHHHHHHHHH
Q 039261          135 VFSALHNKVM  144 (182)
Q Consensus       135 ~~~~Li~~Ir  144 (182)
                      +++.|++++.
T Consensus        94 i~~~Ir~~~~  103 (109)
T 2lm4_A           94 LLKQLQEFSE  103 (109)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776655

>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}

Probab=99.94  E-value=7.3e-27  Score=174.78  Aligned_cols=73  Identities=30%  Similarity=0.600  Sum_probs=66.6

Q ss_pred             HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHh
Q 039261           68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNN  146 (182)
Q Consensus        68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~  146 (182)
                      +||+|+| ||||+|||||||+|+++++++||++|+++|+.||+++|+|||+|++|+++||     ++....|++.|++.
T Consensus         8 ~RL~~~~-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~W~~g~~~~p-----~~~~~~lv~~I~~~   80 (94)
T 2jr5_A            8 ARIKWAC-RRGMLELDVVIMPFFEECFDSLTESEQDDFVALLESDDPDLFAWVMGHGRCE-----NLGLAAMVDKIVAH   80 (94)
T ss_dssp             HHHHHHH-CCSSHHHHHTTTTHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHTCCCCS-----CHHHHHHHHHHHHH
T ss_pred             HHHHHHh-hcccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCC-----CHHHHHHHHHHHHH
Confidence            4899966 9999999999999999999999999999999999999999999999999999     46677777777753

>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1

Probab=99.94  E-value=8e-27  Score=170.52  Aligned_cols=72  Identities=18%  Similarity=0.562  Sum_probs=66.8

Q ss_pred             HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q 039261           68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMN  145 (182)
Q Consensus        68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~  145 (182)
                      +||+|+| ||||+|+|||||+|+++|+++||++|+++|+.||+++|+|||+|++|+++||+     +.+..|+++|++
T Consensus        10 ~RL~~~~-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~w~~g~~~~p~-----~~~~~lv~~I~~   81 (82)
T 1puz_A           10 RKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDK-----GHLIPMLEKIRR   81 (82)
T ss_dssp             HHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCSC-----TTHHHHHHHHHH
T ss_pred             HHHHHHh-hcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCCC-----HHHHHHHHHHHh
Confidence            4799976 99999999999999999999999999999999999999999999999999994     667888888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	182
d1puza_	82	a.218.1.1 (A:) Hypothetical protein NMA1147 {Neiss	3e-20

>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]} Length = 82

class: All alpha proteins
fold: YgfY-like
superfamily: YgfY-like
family: YgfY-like
domain: Hypothetical protein NMA1147
species: Neisseria meningitidis, mc58 [TaxId: 487]

 Score = 77.9 bits (192), Expect = 3e-20
 Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 59  NDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWK 118
            D+  KR   ++ ++++ RG LELDL+ G+++E+    + +  +    ++L  ++ +L  
Sbjct: 4   FDDIAKR---KIRFQTR-RGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLA 59

Query: 119 WLTGQEQPPEAVKTN 133
            + G  +  +     
Sbjct: 60  LINGHSETDKGHLIP 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	182
d1puza_	82	Hypothetical protein NMA1147 {Neisseria meningitid	99.94

>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}

class: All alpha proteins
fold: YgfY-like
superfamily: YgfY-like
family: YgfY-like
domain: Hypothetical protein NMA1147
species: Neisseria meningitidis, mc58 [TaxId: 487]

Probab=99.94  E-value=4e-27  Score=169.97  Aligned_cols=72  Identities=18%  Similarity=0.560  Sum_probs=67.5

Q ss_pred             HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q 039261           68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMN  145 (182)
Q Consensus        68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~  145 (182)
                      |||+||| ||||+|||||||+|+++++++|+++|+.+|+.||+++|+|||+|++|++++|     ++.+..|+++|++
T Consensus        10 krl~~r~-rRG~kElDllL~~F~~~~~~~l~~~el~~f~~lL~~~D~dL~~wl~g~~~~p-----~~~~~~ii~~Irk   81 (82)
T d1puza_          10 RKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETD-----KGHLIPMLEKIRR   81 (82)
T ss_dssp             HHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCS-----CTTHHHHHHHHHH
T ss_pred             HHHHHHh-ccchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHcCChHHHHHHHhCCCCCC-----cHHHHHHHHHHHc
Confidence            4799999 8999999999999999999999999999999999999999999999999999     4567788888874