Citrus Sinensis ID: 039271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
Protein Sequence
MDSVLNSTNQITLKVTDENISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEMEMKLDEDDVLRRV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHcccHHcccccccccccccccccccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHccccccccccccccEEHccEEEEEcccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccHHHHHHcc
Coil and Loop (DISEMBL)
mdsvlnstnqitlkvtdenistgqaqaanknnkdeKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAflsdsywgryLTCAVFQLIFVVGLVLLSVLSFLmikptgcgdgfisckplsSIFAAIFYLSIYLIAfgygghqptlatfgadqfdeskpkerqsktlFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLmgtpgyryvkpcgnplpRVAQVFIAAARKWnvvvpansdelyevagpesaikgSRKILHSNEiefldkaatitdndlagpknpwklcTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGdvmnshigefrlpaasmsaFDICSVLICTGIYRKILVpvagklngnpkglSELQRMGIGLIIGMLAMIAAGATEIQRLkyispgekasslsifwqiPQYVLVGASEVFMYVGqleffngqapdgiksfGSSLCMASISFGNYVSSLLVVMVMGItakgdkpgwipddlntghmdRFYFLLAVLTAFDFVIYLICANwykginldedsCEKEMEMKldeddvlrrv
Flexible Loop (DISEMBL)
mdsvlnstnqitlkvtdenistgqaqaanknnkdekkLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANaannvskwtGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELyevagpesaikgsRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEmemkldeddvlrrv
Low Complexity Region (SEG)
MDSVLNSTNQITLKVTDENISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQlifvvglvllsvlsflMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFlvslasaviallsylMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRmgigliigmlamiaagaTEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCekememkldeddVLRRV
Disordered region (IsUnstruct)
***************************************SFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGA**************TLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLD*********************
Disordered Region (DISOPRED)
*****************************************************GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTG***********SSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANS**********************NEIEFLDKAAT***************CTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYIS*GEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYK**************************
Disordered Region (DISEMBL)
********NQITLKVTDENISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEMEMKLD********
Disordered Region (DISPRO)
*************************************LTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPES**KGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINL**********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSVLNSTNQITLKVTDENISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEMEMKLDEDDVLRRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	609	2.2.26 [Sep-21-2011]
Q3E9B5	609	Putative peptide/nitrate	yes	no	0.870	0.870	0.706	0.0
Q9LQL2	614	Nitrate transporter 1.5 O	no	no	0.906	0.899	0.602	0.0
Q8GXN2	589	Nitrate transporter 1.8 O	no	no	0.875	0.904	0.601	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.885	0.945	0.454	1e-144
Q9LFB8	570	Peptide transporter PTR5	no	no	0.901	0.963	0.419	1e-132
Q93Z20	590	Probable peptide/nitrate	no	no	0.911	0.940	0.426	1e-132
P46032	585	Peptide transporter PTR2	no	no	0.875	0.911	0.429	1e-130
Q84WG0	545	Probable peptide/nitrate	no	no	0.812	0.908	0.387	1e-109
Q05085	590	Nitrate transporter 1.1 O	no	no	0.883	0.911	0.380	1e-102
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.883	0.932	0.377	1e-100

>sp|Q3E9B5|PTR51_ARATH Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/545 (70%), Positives = 447/545 (82%), Gaps = 15/545 (2%)

Query: 52  KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLI 111
            GGW  A ILL NQGLATLAFFGVGVNLVLFLTRV+ Q NA AANNVSKWTGTVYM SL+
Sbjct: 60  NGGWTNAIILLVNQGLATLAFFGVGVNLVLFLTRVMGQGNAEAANNVSKWTGTVYMFSLV 119

Query: 112 GAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAI 170
           GAFLSDSYWGRYLTC +FQ+IFV+G+ LLS +S F +IKP GCGDG + C P SS+  AI
Sbjct: 120 GAFLSDSYWGRYLTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGDGDLECNPPSSLGVAI 179

Query: 171 FYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTIL 230
           FYLS+YL+AFGYGGHQPTLATFGADQ D+ K     SK  FF YFYF LNVG+LFSNTIL
Sbjct: 180 FYLSVYLVAFGYGGHQPTLATFGADQLDDDK----NSKAAFFSYFYFALNVGALFSNTIL 235

Query: 231 VYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNV 290
           VY+ED G WT GFLVSL SA++AL+++L  T  YRYVKPCGNPLPRVAQVF+A ARKW+V
Sbjct: 236 VYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPRVAQVFVATARKWSV 295

Query: 291 VVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPK-NPWKLCTVTQ 349
           V P +  ELYE+ GPESAIKGSRKI HS +  FLD+AA IT+ND  G + N W+LC+VTQ
Sbjct: 296 VRPGDPHELYELEGPESAIKGSRKIFHSTKFLFLDRAAVITENDRNGTRSNAWRLCSVTQ 355

Query: 350 VEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSV 409
           VEEAKCV+K+LPIWLCTIIYSV+FTQMASLFVEQGDVMN+++G+F +PAASMS FDI SV
Sbjct: 356 VEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDVMNAYVGKFHIPAASMSVFDIFSV 415

Query: 410 LICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGE 469
            + TGIYR I+ P            +EL RMGIGLIIG++AM+AAG TEIQRLK + PG+
Sbjct: 416 FVSTGIYRHIIFPYVRP--------TELMRMGIGLIIGIMAMVAAGLTEIQRLKRVVPGQ 467

Query: 470 KASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSS 529
           K S L+I WQIPQYVLVGASEVFMYVGQLEFFNGQAPDG+K+ GSSLCMAS++ GNYVSS
Sbjct: 468 KESELTILWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGLKNLGSSLCMASMALGNYVSS 527

Query: 530 LLVVMVMGITAKGDK-PGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLD 588
           L+V +VM IT +G+  PGWIP++LN GHMDRFYFL+A L A DFV+YLI A WY+ I+ D
Sbjct: 528 LMVNIVMAITKRGENSPGWIPENLNEGHMDRFYFLIAALAAIDFVVYLIFAKWYQPISHD 587

Query: 589 EDSCE 593
           EDS +
Sbjct: 588 EDSIK 592

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/568 (60%), Positives = 419/568 (73%), Gaps = 16/568 (2%)

Query: 49  EKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMC 108
             N G W    ++L NQGLATLAFFGVGVNLVLFLTRVLQQ NA+AANNVSKWTGTVY+ 
Sbjct: 35  RSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIF 94

Query: 109 SLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFL-MIKPTGCGDGFISCKPLSSIF 167
           SL+GAFLSDSYWGRY TCA+FQ+IFV+GL  LS+ S++ +I+P GCGD    C   S + 
Sbjct: 95  SLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGCGDEVTPCGSHSMME 154

Query: 168 AAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSN 227
             +FY SIYLIA GYGG+QP +AT GADQFDE  PKE  SK  FF YFY  LN+GSLFSN
Sbjct: 155 ITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSN 214

Query: 228 TILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARK 287
           TIL Y+ED G W LGF  S  SA+I L+ +L+GTP YRY KP GNPL R  QV +AA +K
Sbjct: 215 TILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKK 274

Query: 288 WNVVVP-ANSDELY--EVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPK----N 340
            +V  P    +E+Y  +  G  +++   R+I+H++E +FLDKAA IT  DL   K    N
Sbjct: 275 SSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVN 334

Query: 341 PWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAAS 400
           PW+LC VTQVEE KC+L+++PIWLCTIIYSVVFTQMASLFVEQG  MN+ + +F++P AS
Sbjct: 335 PWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTSVSDFKIPPAS 394

Query: 401 MSAFDICSVLICTGIYRKILVPVAGKLNGN-PKGLSELQRMGIGLIIGMLAMIAAGATEI 459
           MS+FDI SV +   +YR++L PVA +   N  KG++EL RMGIGL+I ++AMIAAG  E 
Sbjct: 395 MSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAVIAMIAAGIVEC 454

Query: 460 QRLKYISPG----EKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSS 515
            RLKY        + +SSLSIFWQ PQY L+GASEVFMYVGQLEFFN Q PDG+KSFGS+
Sbjct: 455 YRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSA 514

Query: 516 LCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIY 575
           LCM S+S GN+VSSLLV MV+ I+ +   PGWIP +LN GH+DRFYFLLA LT+ D V+Y
Sbjct: 515 LCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVY 574

Query: 576 LICANWYKGINLDEDSCEKEMEMKLDED 603
           + CA WYK I L+    + EM+   D+D
Sbjct: 575 IACAKWYKPIQLEG---KDEMQDMSDDD 599

Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/550 (60%), Positives = 402/550 (73%), Gaps = 17/550 (3%)

Query: 51  NKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSL 110
           N G W  A ++L NQGLATLAFFGVGVNLVLFLTRV+ Q+NA AANNVSKWTGTVY+ SL
Sbjct: 28  NTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEAANNVSKWTGTVYIFSL 87

Query: 111 IGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAA 169
           +GAFLSDSYWGRY TCA+FQ  FV GL++LS+ +  L+++P+GCG     CKP S+    
Sbjct: 88  LGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGCGVEDSPCKPHSTFKTV 147

Query: 170 IFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI 229
           +FYLS+YLIA GYGG+QP +ATFGADQFD     E  SK  FF YFY  LN+GSLFSNT+
Sbjct: 148 LFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFSYFYLALNLGSLFSNTV 207

Query: 230 LVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWN 289
           L Y+ED G+W LGF  S  SA   L+ +L+GTP YR+  P  +P  R  QV +AA RK  
Sbjct: 208 LGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESPWSRFCQVLVAATRKAK 267

Query: 290 VVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLA-----GPK-NPWK 343
           + V      LY+    E+   G +KILH+    FLD+AA +T +D A     G K +PW+
Sbjct: 268 IDVHHEELNLYD---SETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKVESGSKYDPWR 324

Query: 344 LCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSA 403
           LC+VTQVEE KCVL++LPIWLCTI+YSVVFTQMASLFV QG  M ++I  FR+PA+SMS+
Sbjct: 325 LCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNIKNFRIPASSMSS 384

Query: 404 FDICSVLICTGIYRKILVPVAGKLNGNP--KGLSELQRMGIGLIIGMLAMIAAGATEIQR 461
           FDI SV      YR+ L P+  +LN     KGL+ELQRMGIGL+I ++AMI+AG  EI R
Sbjct: 385 FDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAMISAGIVEIHR 444

Query: 462 LKYISP-----GEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL 516
           LK   P        +S+LSIFWQ+PQY+L+GASEVFMYVGQLEFFN QAP G+KSF S+L
Sbjct: 445 LKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAPTGLKSFASAL 504

Query: 517 CMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYL 576
           CMASIS GNYVSSLLV +VM I+   D  GWIP++LN GH++RFYFLLA LTA DFV+YL
Sbjct: 505 CMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAGLTAADFVVYL 564

Query: 577 ICANWYKGIN 586
           ICA WYK I 
Sbjct: 565 ICAKWYKYIK 574

Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/550 (45%), Positives = 372/550 (67%), Gaps = 11/550 (2%)

Query: 42  IRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKW 101
           I KN  +++  G WK    +L N+    LA++G+G NLV +L   L Q NA AANNV+ W
Sbjct: 15  IHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNW 74

Query: 102 TGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSV-LSFLMIKPTGCGDGFISC 160
           +GT Y+  LIGAF++D+Y GRY T A F  I+V G+ LL++  S   +KP  C     +C
Sbjct: 75  SGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD--TC 132

Query: 161 KPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLN 220
            P SS   A+F++++Y+IA G GG +P +++FGADQFDE+   E+  K+ FF +FYF +N
Sbjct: 133 HPNSSQ-TAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSIN 191

Query: 221 VGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQV 280
           VG+L + T+LV+ + +  W  GF V   + VIA+  +  G+  YR  +P G+PL R+ QV
Sbjct: 192 VGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQV 251

Query: 281 FIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDND--LAGP 338
            +AA RK +V VP +   L+E A  ES IKGSRK++H++ ++F DKAA  + +D    G 
Sbjct: 252 IVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGE 311

Query: 339 KNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGE-FRLP 397
            NPW+LC+VTQVEE K ++ +LP+W   I+++ V++QM+++FV QG+ M+ H+G+ F +P
Sbjct: 312 VNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIP 371

Query: 398 AASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGAT 457
           +AS+S FD  SVL  T +Y + ++P+A K   N +G ++LQRMGIGL++ + AMI AG  
Sbjct: 372 SASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVL 431

Query: 458 EIQRLKYISP----GEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFG 513
           E+ RL Y+       +K   +SIFWQIPQY+L+G +EVF ++GQLEFF  QAPD ++S  
Sbjct: 432 EVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLC 491

Query: 514 SSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFV 573
           S+L + +++ GNY+S++LV +VM IT K  KPGWIPD+LN GH+D F++LLA L+  +F+
Sbjct: 492 SALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFL 551

Query: 574 IYLICANWYK 583
           +YL  +  YK
Sbjct: 552 VYLWISKRYK 561

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  474 bits (1219), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/563 (41%), Positives = 368/563 (65%), Gaps = 14/563 (2%)

Query: 30  KNNKD--EKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVL 87
           +++KD   K  T  I K   ++   G WK    +L  +    LA++G+  NL+ +L + +
Sbjct: 2   EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61

Query: 88  QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSV-LSFL 146
             EN +A+ +VS W+GT Y   LIGAF++D+Y GRY T A F +I++ G+ LL++  S  
Sbjct: 62  NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121

Query: 147 MIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQ 206
            + PT  G+   +C   +    AI ++++YLIA G GG +P +++FGADQFD++  KE++
Sbjct: 122 GLTPTCSGE---TCHATAGQ-TAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKE 177

Query: 207 SKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRY 266
           SK+ FF +FYF +NVG++ ++++LV+ + +  W  G  V   +  IA++ +  G+  YR 
Sbjct: 178 SKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRL 237

Query: 267 VKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDK 326
            KP G+PL R+ QV +A+ RK  V +P +   LYE    ES+I GSRK+ H+  + F DK
Sbjct: 238 QKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDK 297

Query: 327 AA--TITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQG 384
           AA  T +DN  A   + WKLCTVTQVEE K ++++LPIW   I+++ V++QM ++FV QG
Sbjct: 298 AAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQG 357

Query: 385 DVMNSHIG-EFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIG 443
           + ++ H+G  F++P+AS+S FD  SVL    +Y K++VP A K  G+ +G ++LQR+GIG
Sbjct: 358 NTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIG 417

Query: 444 LIIGMLAMIAAGATEIQRLKYISP----GEKASSLSIFWQIPQYVLVGASEVFMYVGQLE 499
           L+I + +M++AG  E+ RL Y+       E+   ++IFWQ+PQY LVG +EVF ++GQLE
Sbjct: 418 LVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLE 477

Query: 500 FFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDR 559
           FF  QAPD ++S  S+L + +I+FGNY+S+ LV +V  +T  G +PGWI  +LN GH+D 
Sbjct: 478 FFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDY 537

Query: 560 FYFLLAVLTAFDFVIYLICANWY 582
           F++LLA L+  +F++YL  A WY
Sbjct: 538 FFWLLAGLSFLNFLVYLWIAKWY 560

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  472 bits (1215), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/570 (42%), Positives = 359/570 (62%), Gaps = 15/570 (2%)

Query: 19  NISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVN 78
           N  TG +  A   + D       I  N   +K  G WK    +L N+    LA++G+  N
Sbjct: 27  NHLTGLSSTAEDGSID-------IYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKN 79

Query: 79  LVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV 138
           L+ + T  L + N +AA++V  W GT Y+  LIGA ++DSYWGRY T A F  I+ +G+ 
Sbjct: 80  LITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMA 139

Query: 139 LLSV-LSFLMIKPTGCGDGFIS-CKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQ 196
           LL++  S  ++KP  C     + C P +++  A+F+  +YLIA G GG +P +++FGADQ
Sbjct: 140 LLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQ 199

Query: 197 FDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS 256
           FD++ P+ER  K  FF +FYF +N+GS  S+T+LV+ +++  W LGFL+      +++ S
Sbjct: 200 FDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIAS 259

Query: 257 YLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKIL 316
           + +GTP YR+ KP G+P+ RV QV +AA RK  + +P +   LYE     S I GSRKI 
Sbjct: 260 FFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQ 319

Query: 317 HSNEIEFLDKAATIT--DNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFT 374
           H++  +FLDKAA I+  ++      NPWKLCTVTQVEE K +++M PIW   I+YSV+++
Sbjct: 320 HTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYS 379

Query: 375 QMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGL 434
           Q+++LFV+QG  MN  I  F +P AS   FD   VLI   IY + LVP   +  G PKGL
Sbjct: 380 QISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGL 439

Query: 435 SELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMY 494
           ++LQRMGIGL + +L++ AA   E  RL+     +   ++SIFWQIPQY+L+G +EVF +
Sbjct: 440 TDLQRMGIGLFLSVLSIAAAAIVETVRLQL---AQDFVAMSIFWQIPQYILMGIAEVFFF 496

Query: 495 VGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNT 554
           +G++EFF  ++PD ++S  S+L + + + G+Y+SSL++ +V   TA G K GW+PDDLN 
Sbjct: 497 IGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNK 556

Query: 555 GHMDRFYFLLAVLTAFDFVIY-LICANWYK 583
           GH+D F++LL  L   +  +Y LIC    K
Sbjct: 557 GHLDYFFWLLVSLGLVNIPVYALICVKHTK 586

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/543 (42%), Positives = 348/543 (64%), Gaps = 10/543 (1%)

Query: 49  EKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMC 108
           ++  G WK    +L N+    LA++G+  NL+ +LT  L Q N +AA NV+ W GT Y+ 
Sbjct: 39  KEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLT 98

Query: 109 SLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSV-LSFLMIKPTGCGDGFISCKPLSSIF 167
            LIGA L+D+YWGRY T A F  I+ +G+  L++  S   +KP  C   F  C   +   
Sbjct: 99  PLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDF--CPSATPAQ 156

Query: 168 AAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSN 227
            A+F+  +YLIA G GG +P +++FGADQFD++  +ER  K  FF +FYF +N+G+L S+
Sbjct: 157 YAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSS 216

Query: 228 TILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARK 287
           ++LV+ +++  W LGF +      +A+ S+  GTP YR+ KP G+P+ R++QV +A+ RK
Sbjct: 217 SLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRK 276

Query: 288 WNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGP--KNPWKLC 345
            +V VP ++  LYE     SAI GSRKI H+++ ++LDKAA I++ +       N W+LC
Sbjct: 277 SSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLC 336

Query: 346 TVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFD 405
           TVTQVEE K +++M PIW   II+S V+ QM+++FV+QG  MN  IG F+LP A++  FD
Sbjct: 337 TVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFD 396

Query: 406 ICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYI 465
             SV+I   +Y + +VP+A K  G  KG +E+QRMGIGL + +L M AA   EI RL   
Sbjct: 397 TASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMA 456

Query: 466 SPGEKASS-----LSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMAS 520
           +      S     +S+ WQIPQY ++GA+EVF ++GQLEFF  Q+PD ++S  S+L + +
Sbjct: 457 NDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLT 516

Query: 521 ISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICAN 580
            + GNY+SSL++ +V   T +  + GWI D+LN+GH+D F++LLA L+  +  +Y   A 
Sbjct: 517 NALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSAA 576

Query: 581 WYK 583
            YK
Sbjct: 577 RYK 579

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  397 bits (1020), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 317/542 (58%), Gaps = 47/542 (8%)

Query: 42  IRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKW 101
           I  N   ++  G WK    + AN+    LA++G+  NL+ + T  L + N +AA +V  W
Sbjct: 33  IHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTW 92

Query: 102 TGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSV-LSFLMIKPTGCGDGFISC 160
            GT Y+  LIGA ++D+YWGRY T A F  I+  G+V L++  S   +KP  C      C
Sbjct: 93  QGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGSL--C 150

Query: 161 KPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLN 220
            P + + + + +  +YLIA G GG +P +++FGADQFD++ P ER  K  FF +FYF +N
Sbjct: 151 PPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTIN 210

Query: 221 VGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQV 280
           +G+  S+T+LV+ +++  W LGFL+      +A +S+  GTP YR+ KP G+P+  V QV
Sbjct: 211 IGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQV 270

Query: 281 FIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKN 340
            +AA RK N+ VP +S                                  TD   A   N
Sbjct: 271 LVAAYRKSNLKVPEDS----------------------------------TDEGDAN-TN 295

Query: 341 PWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAAS 400
           PWKLCTVTQVEE K +L+++PIW   II+SV+ +Q+ +LFV+QG  M   IG F +P A+
Sbjct: 296 PWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIPPAT 355

Query: 401 MSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQ 460
           +  FD  SVLI   IY +++VP+  +  G  KG +ELQRMGIGL + +L++  A   E  
Sbjct: 356 LGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVETV 415

Query: 461 RLKYISPGEKASS-----LSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSS 515
           RL+     +   S     L+IFWQIPQY L+G + VF +VG++EFF  Q+PD ++S  S+
Sbjct: 416 RLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCSA 475

Query: 516 LCMASISFGNYVSSLLVVMVMGITAKGDKPGWIP-DDLNTGHMDRFYFLLAVLTAFDFVI 574
             + + + GNY+SSL++ +V  ++ K     WIP D++N GH+D F++LL  L + +  +
Sbjct: 476 WALLTTTLGNYLSSLIITLVAYLSGKD---CWIPSDNINNGHLDYFFWLLVSLGSVNIPV 532

Query: 575 YL 576
           ++
Sbjct: 533 FV 534

Arabidopsis thaliana (taxid: 3702)

>sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 329/563 (58%), Gaps = 25/563 (4%)

Query: 49  EKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMC 108
               GGW  A+++L  + +  L   G+GVNLV +LT  +   NA AAN V+ + GT +M 
Sbjct: 25  RSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFML 84

Query: 109 SLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLM-IKPTGCGDGFIS-CKPLSSI 166
            L+G F++D++ GRYLT A+F  I   G+ +L++ + +  ++P  C     S C+  S I
Sbjct: 85  CLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGI 144

Query: 167 FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS 226
              + YL++YL A G GG + +++ FG+DQFDE++PKER   T FF  F+F +NVGSL +
Sbjct: 145 QLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLA 204

Query: 227 NTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAAR 286
            T+LVY +D      G+ +   + V+AL  +L GT  YR+ K  G+P+ +VA V +AA R
Sbjct: 205 VTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWR 264

Query: 287 KWNVVVPANSDELYEV---AGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPK---- 339
              + +PA+   LY+V      E ++KG +K+ H+ +   LDKAA I D + AG      
Sbjct: 265 NRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAA-IRDQE-AGVTSNVF 322

Query: 340 NPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAA 399
           N W L T+T VEE K +++MLPIW   I++  V  Q+ +L V Q + ++  IG F +P A
Sbjct: 323 NKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPA 382

Query: 400 SMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEI 459
           SM+ F +  +L+ T +Y ++ + +  KL   P GL  LQR+G+GL  G +AM  A   E+
Sbjct: 383 SMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVEL 442

Query: 460 QRLKYIS---PGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL 516
           +RL+      P  K   L  +  IPQY++VG  E  +Y GQL+FF  + P G+K   + L
Sbjct: 443 KRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGL 502

Query: 517 CMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYL 576
            +++++ G + SS+LV +V   T K     WI DDLN G +  FY+L+AVL A +F+I+L
Sbjct: 503 LLSTLALGFFFSSVLVTIVEKFTGKAHP--WIADDLNKGRLYNFYWLVAVLVALNFLIFL 560

Query: 577 ICANWY---------KGINLDED 590
           + + WY          GI LD++
Sbjct: 561 VFSKWYVYKEKRLAEVGIELDDE 583

Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 332/556 (59%), Gaps = 18/556 (3%)

Query: 49  EKNK-GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYM 107
           +K+K GGW  A+++L  + +  L+  G+ VNLV +L   +   ++ +AN V+ + GT ++
Sbjct: 21  DKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIVTDFMGTSFL 80

Query: 108 CSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFL-MIKPTGCGDGFISCKPLSSI 166
             L+G FL+DS+ GR+ T  +F  I  +G   L+V + L  ++P  C  G  +C P ++ 
Sbjct: 81  LCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTCHHGE-ACIPATAF 139

Query: 167 FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS 226
              I Y+S+YLIA G GG + +++ FG+DQFD+  PKE+     FF  F+FF+++G+L +
Sbjct: 140 QMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFNRFFFFISMGTLLA 199

Query: 227 NTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAAR 286
            T+LVY +D    +  + +   S  IA++ +L GT  YRY K  G+P+ ++ QV  AA R
Sbjct: 200 VTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGSPVVQIFQVIAAAFR 259

Query: 287 KWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDL------AGPKN 340
           K  + +P +   LYE   PE       +I H+++   LDKAA + + D           N
Sbjct: 260 KRKMELPQSIVYLYE-DNPEGI-----RIEHTDQFHLLDKAAIVAEGDFEQTLDGVAIPN 313

Query: 341 PWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAAS 400
           PWKL +VT+VEE K ++++LPIW  TII+   + QM +  VEQ   M  +IG F++PA S
Sbjct: 314 PWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNIGSFKIPAGS 373

Query: 401 MSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQ 460
           ++ F + ++LI   +Y + ++P   K  G P G S LQR+ IGL++    M AA   E +
Sbjct: 374 LTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLVLSTAGMAAAALVEQK 432

Query: 461 RLKYI-SPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMA 519
           RL    S  +K   +S+F  +PQ+ LVGA E F+Y GQL+FF  Q+P G+K+  + L + 
Sbjct: 433 RLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKGMKTMSTGLFLT 492

Query: 520 SISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICA 579
           ++S G +VSS LV +V  +T+     GW+ D++N G +D FY+LL +L+  +FV+Y+ICA
Sbjct: 493 TLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILSGINFVVYIICA 552

Query: 580 NWYKGINLDEDSCEKE 595
            W+K     +DS EKE
Sbjct: 553 LWFKPTK-GKDSVEKE 567

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
224076056	611	predicted protein [Populus trichocarpa]	0.968	0.965	0.775	0.0
224057172	541	predicted protein [Populus trichocarpa]	0.880	0.990	0.815	0.0
356575028	596	PREDICTED: putative peptide/nitrate tran	0.972	0.993	0.729	0.0
356567302	653	PREDICTED: putative peptide/nitrate tran	0.952	0.888	0.721	0.0
356534506	595	PREDICTED: putative peptide/nitrate tran	0.958	0.981	0.733	0.0
356524575	654	PREDICTED: putative peptide/nitrate tran	0.906	0.844	0.752	0.0
147784164	594	hypothetical protein VITISV_005961 [Viti	0.945	0.969	0.717	0.0
359478771	569	PREDICTED: putative peptide/nitrate tran	0.919	0.984	0.755	0.0
357445161	589	Peptide transporter PTR1 [Medicago trunc	0.929	0.960	0.715	0.0
449502220	668	PREDICTED: LOW QUALITY PROTEIN: putative	0.955	0.871	0.703	0.0

>gi|224076056|ref|XP_002304892.1| predicted protein [Populus trichocarpa] gi|222842324|gb|EEE79871.1| predicted protein [Populus trichocarpa]

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/597 (77%), Positives = 524/597 (87%), Gaps = 7/597 (1%)

Query: 15  VTDENISTGQAQAANK-NNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFF 73
           VT E++ + +  A N+   ++E  + S   K  I  K+ GGWK ASILLANQ LATLAFF
Sbjct: 20  VTGESVISRENVAVNRIRTEEEHDIAS--NKRSITWKSSGGWKAASILLANQCLATLAFF 77

Query: 74  GVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF 133
           GVGVNLVLFLTRVL Q NA+AAN+VSKWTGTVY+CSLIGAFLSDSYWGRYLTCAVFQLIF
Sbjct: 78  GVGVNLVLFLTRVLGQSNADAANSVSKWTGTVYLCSLIGAFLSDSYWGRYLTCAVFQLIF 137

Query: 134 VVGLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATF 192
           V GL L+SV S + +IKP GCGDG ++C+P SS+  AIFYL+IYL+AFGYGGHQP+LATF
Sbjct: 138 VSGLALVSVSSCYFLIKPDGCGDGELACEPTSSVGVAIFYLAIYLVAFGYGGHQPSLATF 197

Query: 193 GADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVI 252
           GADQFDESKPKE+  K  +FCYFYF LN GSLFSNTILVY+ED GKWTLGFLVSL SAV+
Sbjct: 198 GADQFDESKPKEKNYKAAYFCYFYFALNFGSLFSNTILVYFEDHGKWTLGFLVSLGSAVL 257

Query: 253 ALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGS 312
           AL+S+L GTPGY+YVKPCGNPLPRVAQVF+AA +KW+V+ PA +DELYEV GPESAIKGS
Sbjct: 258 ALVSFLFGTPGYQYVKPCGNPLPRVAQVFVAAVKKWDVI-PAKADELYEVEGPESAIKGS 316

Query: 313 RKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVV 372
           RKILHS++ EFLDKAAT+T++DL+  KNPW+LCT++QVEEAKCVLKMLPIWLCTIIYSVV
Sbjct: 317 RKILHSDDFEFLDKAATVTEDDLSHQKNPWRLCTISQVEEAKCVLKMLPIWLCTIIYSVV 376

Query: 373 FTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPK 432
           FTQMASLFVEQGDVMNS+ G+F LPAASMSAFDICSVL+CTGIYR+ILVP+AG+L+GN K
Sbjct: 377 FTQMASLFVEQGDVMNSYAGKFHLPAASMSAFDICSVLVCTGIYRQILVPLAGRLSGNTK 436

Query: 433 GLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVF 492
           GL+ELQRMGIGLIIGMLAM AAGATEI+RLK+++ G+K SSLSIFWQIPQYVLVGASEVF
Sbjct: 437 GLTELQRMGIGLIIGMLAMFAAGATEIERLKHVTEGKKVSSLSIFWQIPQYVLVGASEVF 496

Query: 493 MYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDL 552
           MYVGQLEFFNGQAPDGIKSFGSSLCMASIS GNYVSS+LV MVM ITAKGDKPGWIPDDL
Sbjct: 497 MYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSMLVSMVMKITAKGDKPGWIPDDL 556

Query: 553 NTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEMEMKLDEDDVLRRV 609
           NTGHMDRFYFL+AVLTAFDFVIYL CANWY  IN+D+      ME +  EDD L RV
Sbjct: 557 NTGHMDRFYFLIAVLTAFDFVIYLFCANWYTPINIDDSHGGIGMEKQ--EDDALARV 611

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057172|ref|XP_002299155.1| predicted protein [Populus trichocarpa] gi|222846413|gb|EEE83960.1| predicted protein [Populus trichocarpa]

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/538 (81%), Positives = 490/538 (91%), Gaps = 2/538 (0%)

Query: 53  GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIG 112
           GGW  ASILLANQ LATLAFFGVGVNLVLFLTRVL Q NA+AANNVSKWTGTVY+CSL+G
Sbjct: 3   GGWTAASILLANQCLATLAFFGVGVNLVLFLTRVLGQSNADAANNVSKWTGTVYLCSLVG 62

Query: 113 AFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIF 171
           AFLSDSYWGRYLTCA+FQLIFV GLVL+SV S F +IKP GCGDG ++C P +S+   +F
Sbjct: 63  AFLSDSYWGRYLTCAIFQLIFVSGLVLVSVSSWFFLIKPDGCGDGKLTCVPATSMGQVVF 122

Query: 172 YLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV 231
           YL+IYL+AFGYGGHQP++ATFGADQFDESKPKER SK  FFCYFYF LN GSLFSNT+LV
Sbjct: 123 YLAIYLVAFGYGGHQPSIATFGADQFDESKPKERNSKAAFFCYFYFALNFGSLFSNTLLV 182

Query: 232 YYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVV 291
           Y+ED G+WTLGFL+SL SAV+AL+S+L G PGY+YVKPCGNPLPRVAQVF+AAARKW+V+
Sbjct: 183 YFEDHGRWTLGFLLSLGSAVVALVSFLFGAPGYKYVKPCGNPLPRVAQVFVAAARKWDVI 242

Query: 292 VPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVE 351
            P  +DELYE+ GPESAIKGSRKI HS E EFLDKAAT+T++DL+  KNPW+LCT+TQVE
Sbjct: 243 -PVKADELYELEGPESAIKGSRKIFHSEEFEFLDKAATMTEDDLSHQKNPWRLCTITQVE 301

Query: 352 EAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLI 411
           EAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNS+IG+F LPAASMSAFDICSVL+
Sbjct: 302 EAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSYIGKFHLPAASMSAFDICSVLV 361

Query: 412 CTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKA 471
           CTGIYR+ILVP+AG+L+GNPKGL+ELQRMGIGL+IGMLAM+AAGATEI+RLK +  G K 
Sbjct: 362 CTGIYRQILVPLAGRLSGNPKGLTELQRMGIGLVIGMLAMLAAGATEIERLKNVIEGHKV 421

Query: 472 SSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLL 531
           SSLSIFWQIPQYVLVGASEVFMY+GQLEFFNGQAPDGIKSFGSSLCMASIS GNY SS+L
Sbjct: 422 SSLSIFWQIPQYVLVGASEVFMYIGQLEFFNGQAPDGIKSFGSSLCMASISLGNYASSML 481

Query: 532 VVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDE 589
           V MVM IT KGDKPGWIPDDLNTGHMDRFYFL+AVLTAFDFVIYL CA WYK IN+D+
Sbjct: 482 VNMVMKITTKGDKPGWIPDDLNTGHMDRFYFLIAVLTAFDFVIYLFCAKWYKPINIDD 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575028|ref|XP_003555644.1| PREDICTED: putative peptide/nitrate transporter At5g19640-like [Glycine max]

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/599 (72%), Positives = 497/599 (82%), Gaps = 7/599 (1%)

Query: 12  TLKVTDENISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLA 71
           +      NI+  +    + +N++E  L    R +   EK  GG K AS+LL NQ LATLA
Sbjct: 4   SFSANSPNIAANKLIEGDSSNREESVLME--RTSRAGEKKTGGAKVASLLLVNQALATLA 61

Query: 72  FFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL 131
           FFGVGVNLVLFLTRVL Q+N NAANNVSKW GTVYM SLIGAFLSDSYWGRYLTC VFQL
Sbjct: 62  FFGVGVNLVLFLTRVLGQDNVNAANNVSKWIGTVYMFSLIGAFLSDSYWGRYLTCTVFQL 121

Query: 132 IFVVGLVLLSVLSF-LMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLA 190
           +FV+GL L S+ S+  +I P GCGDG   CKP SSI   IFYLSIYL+AFGYGGHQPTLA
Sbjct: 122 VFVLGLALSSLSSWRFLINPVGCGDGHTPCKP-SSIGDEIFYLSIYLVAFGYGGHQPTLA 180

Query: 191 TFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASA 250
           TFGADQ+DE  PKE+ SK  FFCYFYF LNVGSLFSNT+LVYYED+G WT+GFLVSL SA
Sbjct: 181 TFGADQYDEKNPKEKSSKVAFFCYFYFALNVGSLFSNTVLVYYEDTGMWTMGFLVSLVSA 240

Query: 251 VIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIK 310
           VIA L++L+GTP YRYVKPCGNP+ RVAQVF A  RKW V  PA ++ELYEV GP+SAIK
Sbjct: 241 VIAFLAFLLGTPRYRYVKPCGNPVMRVAQVFSAVFRKWKVS-PAKAEELYEVDGPQSAIK 299

Query: 311 GSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYS 370
           GSRKI H+++ EF+DKAATI + +   PKNPW+LCTVTQVEEAKCVL+MLP+WLCTIIYS
Sbjct: 300 GSRKIRHTDDFEFMDKAATIKETEEHSPKNPWRLCTVTQVEEAKCVLRMLPVWLCTIIYS 359

Query: 371 VVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGN 430
           VVFTQMASLFVEQGDVMNS+IG F LPAASMSAFDICSVL+CTGIYR+ILVP+AG+L+GN
Sbjct: 360 VVFTQMASLFVEQGDVMNSYIGSFHLPAASMSAFDICSVLVCTGIYRQILVPLAGRLSGN 419

Query: 431 PKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASE 490
           PKGLSELQRMGIGLIIGMLAM+A+GATEI RL+ IS G+K SSLSIFWQIPQYVLVGASE
Sbjct: 420 PKGLSELQRMGIGLIIGMLAMVASGATEIARLRRISHGQKTSSLSIFWQIPQYVLVGASE 479

Query: 491 VFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPD 550
           VFMYVGQLEFFNGQAPDGIKSFGSSLCMASIS GNYVSS+LV MVM ITA+G   GWIP+
Sbjct: 480 VFMYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSMLVNMVMIITARGQSKGWIPE 539

Query: 551 DLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEMEMKLDEDDVLRRV 609
           +LNTGHMDRF+FLLA L AFDFV+YL CA WYK IN+++     + + K  E+DV  +V
Sbjct: 540 NLNTGHMDRFFFLLAGLAAFDFVLYLFCAKWYKSINIEDSDMGDQGQEK--EEDVNNKV 596

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567302|ref|XP_003551860.1| PREDICTED: putative peptide/nitrate transporter At5g19640-like [Glycine max]

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/596 (72%), Positives = 493/596 (82%), Gaps = 16/596 (2%)

Query: 4   VLNSTNQITLKVTDENISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLA 63
           + NS N + ++ T++ ++ G      +++   KK+             KGGWK A ILLA
Sbjct: 66  ICNSVNSVNVEATEKKVTGGNGSYTEQSDTSYKKI-------------KGGWKTAIILLA 112

Query: 64  NQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRY 123
           NQ LATLAFFGVGVNLVLFLTRVL+Q++A AANNVSKWTGTVY+ SLIGAFLSDSYWGRY
Sbjct: 113 NQALATLAFFGVGVNLVLFLTRVLRQDSAEAANNVSKWTGTVYIFSLIGAFLSDSYWGRY 172

Query: 124 LTCAVFQLIFVVGLVLLSVLSF-LMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGY 182
           LTCA+FQ IFVVGL +LS+ S+  +IKP GCG+   +C   SS+   IFYLSIYL+AFGY
Sbjct: 173 LTCAIFQFIFVVGLGMLSLSSWRFLIKPVGCGNEETTCLEPSSVGVGIFYLSIYLVAFGY 232

Query: 183 GGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLG 242
           GGHQPTLATFGADQFDE   K++ ++  FF YFYF LNVGSLFSNTILVYYEDSG WT+G
Sbjct: 233 GGHQPTLATFGADQFDEKNEKQKNAREAFFSYFYFALNVGSLFSNTILVYYEDSGMWTMG 292

Query: 243 FLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEV 302
           FLVSLASAVIAL+SYL G   YRYVK  GNP+ RV QVF+A  RKW V  PA   +LYEV
Sbjct: 293 FLVSLASAVIALVSYLAGYRKYRYVKGYGNPVIRVVQVFVATVRKWKVG-PAKEHQLYEV 351

Query: 303 AGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPI 362
            GPESAIKGSRKI HSN+  F+DKAATIT+ D    KN W+LCTVTQVEEAKCVL+MLP+
Sbjct: 352 DGPESAIKGSRKIHHSNDFRFMDKAATITEKDAVNLKNHWRLCTVTQVEEAKCVLRMLPV 411

Query: 363 WLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVP 422
           WLCTIIYSVVFTQMASLFVEQGDVMN+ IG F LPAASMS FDICSVL+CTGIYR+ILVP
Sbjct: 412 WLCTIIYSVVFTQMASLFVEQGDVMNNKIGNFHLPAASMSVFDICSVLLCTGIYRQILVP 471

Query: 423 VAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQ 482
           +AG+ +GNP+GL+ELQRMG+GLIIGMLA++AAGATE +RLK+I+PGEKASSLSIFWQIPQ
Sbjct: 472 LAGRFSGNPRGLTELQRMGVGLIIGMLAILAAGATEFERLKHITPGEKASSLSIFWQIPQ 531

Query: 483 YVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKG 542
           YVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASIS GNYVSSLLV MVMGITA+G
Sbjct: 532 YVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSLLVYMVMGITARG 591

Query: 543 DKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINL-DEDSCEKEME 597
           + PGWIP++LN GHMDRF+FL+AVLTA DFV+YL+CA WYK INL D D   +E E
Sbjct: 592 ENPGWIPNNLNVGHMDRFFFLVAVLTALDFVLYLLCARWYKSINLGDGDMGSQEDE 647

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534506|ref|XP_003535794.1| PREDICTED: putative peptide/nitrate transporter At5g19640-like [Glycine max]

 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/590 (73%), Positives = 492/590 (83%), Gaps = 6/590 (1%)

Query: 12  TLKVTDENISTGQAQAANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLA 71
           +      NI+  +    + +N++E  +    R +   EK  GG K A +LL NQ LATLA
Sbjct: 4   SFSANSPNIAANKLIEGDSSNREESVIMK--RSSRAGEKKTGGAKVARLLLVNQALATLA 61

Query: 72  FFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL 131
           FFGVGVNLVLFLTRVL Q+N NAANNVSKW GTVYM SLIGAFLSDSYWGRYLTC VFQL
Sbjct: 62  FFGVGVNLVLFLTRVLGQDNVNAANNVSKWIGTVYMFSLIGAFLSDSYWGRYLTCTVFQL 121

Query: 132 IFVVGLVLLSVLSF-LMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLA 190
           +FV+GL L S+ S+  +I P GCGDG   CKP SSI   IFYLSIYL+AFGYGGHQPTLA
Sbjct: 122 VFVLGLALSSLSSWRFLINPVGCGDGHTLCKP-SSIGDEIFYLSIYLVAFGYGGHQPTLA 180

Query: 191 TFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASA 250
           TFGADQ+DE  PKE+ SK  FFCYFYF LNVGSLFSNT+LVYYED+G WT+GFLVSL SA
Sbjct: 181 TFGADQYDEKNPKEKSSKVAFFCYFYFALNVGSLFSNTVLVYYEDTGMWTMGFLVSLVSA 240

Query: 251 VIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIK 310
           VIA L++L+GTP YRYVKPCGNP+ RVAQVF A  RKW V  PA ++ELYEV GP+SAIK
Sbjct: 241 VIAFLAFLLGTPRYRYVKPCGNPVVRVAQVFTAVFRKWKVS-PAKAEELYEVDGPQSAIK 299

Query: 311 GSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYS 370
           GSRKI H+++ EF+DKAATI + +   PKNPW+LCTVTQVEEAKCVL+MLP+WLCTIIYS
Sbjct: 300 GSRKIRHTDDFEFMDKAATIKETEEHSPKNPWRLCTVTQVEEAKCVLRMLPVWLCTIIYS 359

Query: 371 VVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGN 430
           VVFTQMASLFVEQGDVMNS+IG F LPAASMSAFDI SVL+CTGIYR+ILVP+AG+L+GN
Sbjct: 360 VVFTQMASLFVEQGDVMNSYIGSFHLPAASMSAFDIFSVLVCTGIYRQILVPLAGRLSGN 419

Query: 431 PKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASE 490
           PKGLSELQRMGIGLIIGMLAM+A+GATEI RL+ IS G+K SSLSIFWQIPQYVLVGASE
Sbjct: 420 PKGLSELQRMGIGLIIGMLAMVASGATEIARLRRISHGQKTSSLSIFWQIPQYVLVGASE 479

Query: 491 VFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPD 550
           VFMYVGQLEFFNGQAPDGIKSFGSSLCMASIS GNYVSS+LV MVM ITA+G   GWIP+
Sbjct: 480 VFMYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSMLVNMVMIITARGQNKGWIPE 539

Query: 551 DLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINL-DEDSCEKEMEMK 599
           +LNTGHMDRF+FLLA L AFDFV+YL CA WYK IN+ D D  ++E E++
Sbjct: 540 NLNTGHMDRFFFLLAGLAAFDFVLYLFCAKWYKNINIEDSDMGDQEEELE 589

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524575|ref|XP_003530904.1| PREDICTED: putative peptide/nitrate transporter At5g19640-like [Glycine max]

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/554 (75%), Positives = 475/554 (85%), Gaps = 2/554 (0%)

Query: 48  HEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYM 107
           HEK KGGWK A+ILLANQ LATLAFFGVGVNLVLFLTRVL QE+A AANNVSKWTGTVY+
Sbjct: 98  HEKIKGGWKTANILLANQALATLAFFGVGVNLVLFLTRVLHQESAEAANNVSKWTGTVYI 157

Query: 108 CSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSF-LMIKPTGCGDGFISCKPLSSI 166
            SLIGAFLSDSYWGRYLTC +FQLIFVVGL +LS  S+  +IKP GCG+   +C   SS+
Sbjct: 158 FSLIGAFLSDSYWGRYLTCTIFQLIFVVGLGMLSFTSWRFLIKPAGCGNEETTCLEPSSL 217

Query: 167 FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS 226
              IFYLSIYL+AFGYGGHQPTLATFGADQFDE   K R ++  FFCYFYF LNVGSLFS
Sbjct: 218 GVGIFYLSIYLVAFGYGGHQPTLATFGADQFDEKNEKHRDARETFFCYFYFALNVGSLFS 277

Query: 227 NTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAAR 286
           NT+LVYYE+SG WT GFLVSLASAVIAL+SYL G   Y+YVK  GNP+ RV QVF+A AR
Sbjct: 278 NTVLVYYENSGMWTRGFLVSLASAVIALVSYLAGYQKYKYVKAHGNPVIRVVQVFVATAR 337

Query: 287 KWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCT 346
           KW V   A  D+LYEV GPESAIKGSRKILHSN+  F+DKAATIT+ D    KN W+LCT
Sbjct: 338 KWKVG-SAKEDQLYEVDGPESAIKGSRKILHSNDFRFMDKAATITEKDAVHLKNHWRLCT 396

Query: 347 VTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDI 406
           VTQVEEAKCVL+MLP+WLCTIIYSVVFTQMASLFVEQG+VMN+ IG+F LPAASMS  DI
Sbjct: 397 VTQVEEAKCVLRMLPVWLCTIIYSVVFTQMASLFVEQGNVMNNEIGKFHLPAASMSVLDI 456

Query: 407 CSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYIS 466
           CSVL+CTGIYR+ILVP+AG+L+GNP+GL+ELQRMG+GL+IGMLAM+AAG TE +RLK+++
Sbjct: 457 CSVLLCTGIYRQILVPLAGRLSGNPRGLTELQRMGVGLVIGMLAMLAAGVTEFERLKHVT 516

Query: 467 PGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNY 526
           P EKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMAS+S GNY
Sbjct: 517 PREKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASMSLGNY 576

Query: 527 VSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGIN 586
           VSS+LV MVM ITA+G+ PGWIP++LN GHMDRF+FL+AVL A DFV+YL+CA WYK IN
Sbjct: 577 VSSMLVYMVMRITARGENPGWIPNNLNVGHMDRFFFLVAVLNALDFVLYLLCARWYKSIN 636

Query: 587 LDEDSCEKEMEMKL 600
           L +   E + + ++
Sbjct: 637 LGDGDMESQEDKEM 650

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784164|emb|CAN77230.1| hypothetical protein VITISV_005961 [Vitis vinifera]

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 491/599 (81%), Gaps = 23/599 (3%)

Query: 5   LNSTNQITLKVTDENISTGQAQAANKNNKDEKKLT------SFIRKNLIHEKNKGGWKYA 58
           LN+TN+I L+V  E    G ++A N++    ++        +F  +  I     GGWK A
Sbjct: 4   LNTTNEIALQVRQETNRVGGSEAVNRDWHGNEEKKKKKMMGAFQFQGFITGNATGGWKSA 63

Query: 59  SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDS 118
           S+LLANQGLATLAFFGVGVNLVLFLTRVL Q+NANAAN+VSKWTGTVY+CSLIGAFLSDS
Sbjct: 64  SLLLANQGLATLAFFGVGVNLVLFLTRVLSQDNANAANSVSKWTGTVYLCSLIGAFLSDS 123

Query: 119 YWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLI 178
           YWGRYLTCA+FQ+I V+G                CGD    C P SS+   +FY SIYL+
Sbjct: 124 YWGRYLTCAIFQVILVLG----------------CGDRTTLCSPSSSVGLGVFYSSIYLV 167

Query: 179 AFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGK 238
           AFGYGGHQPTLAT GADQFDE+ P+E  SKT+FF YFYF LN+GSLFSNTILVY+EDSGK
Sbjct: 168 AFGYGGHQPTLATLGADQFDETNPREMNSKTVFFSYFYFALNLGSLFSNTILVYFEDSGK 227

Query: 239 WTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDE 298
           WTLGFLVS  SA+IAL+ +L G+ GYR++KPCGNPLPRVAQVF+AA RKW+VVVP N D 
Sbjct: 228 WTLGFLVSTGSAIIALVIFLCGSSGYRHIKPCGNPLPRVAQVFVAAFRKWDVVVPENGDG 287

Query: 299 LYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLK 358
           LYE+ G ESAIKGSRKILHSNEIEFLDKAAT+ + D+  P NPW+LCTVTQVEEAKCV+K
Sbjct: 288 LYELEGSESAIKGSRKILHSNEIEFLDKAATMIEADMVDP-NPWRLCTVTQVEEAKCVIK 346

Query: 359 MLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRK 418
           MLPIWLCTIIYSV+FTQMASLFVEQGDVMN  IG F +PAASMSAFDI SVL+CTGIYR+
Sbjct: 347 MLPIWLCTIIYSVIFTQMASLFVEQGDVMNRKIGNFEIPAASMSAFDIFSVLLCTGIYRQ 406

Query: 419 ILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFW 478
           ILVP++GKL GNPKG+SELQRMGIGLIIG+ AMIAAG TE+ RL+ +SP E+ASSLSIFW
Sbjct: 407 ILVPISGKLTGNPKGMSELQRMGIGLIIGIAAMIAAGLTELGRLRRVSPNEEASSLSIFW 466

Query: 479 QIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGI 538
           Q PQYVLVGASEVFMYVGQLEFFNGQAPDGIKS GSSLCMASIS GNYVSSLLV +VMG+
Sbjct: 467 QTPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSLGSSLCMASISLGNYVSSLLVNIVMGV 526

Query: 539 TAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEME 597
           T +GD PGWIP+DLNTGH+DRFYFL+AVLT  DFVIY+ CA WYK INL+    EK+ E
Sbjct: 527 TTRGDNPGWIPEDLNTGHLDRFYFLIAVLTVIDFVIYVFCAKWYKSINLESFEKEKDQE 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478771|ref|XP_002283281.2| PREDICTED: putative peptide/nitrate transporter At5g19640-like [Vitis vinifera]

 Score =  850 bits (2196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/568 (75%), Positives = 487/568 (85%), Gaps = 8/568 (1%)

Query: 38  LTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANN 97
           + +F  +  I     GGWK AS+LLANQGLATLAFFGVGVNLVLFLTRVL Q+NANAAN+
Sbjct: 1   MGAFQFQGFITGNATGGWKSASLLLANQGLATLAFFGVGVNLVLFLTRVLSQDNANAANS 60

Query: 98  VSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLM-IKPTGCGDG 156
           VSKWTGTVY+CSLIGAFLSDSYWGRYLTCA+FQ+I V+GL+LLS+ S+L  I+P GCGD 
Sbjct: 61  VSKWTGTVYLCSLIGAFLSDSYWGRYLTCAIFQVILVLGLLLLSLSSWLFLIEPKGCGDR 120

Query: 157 FISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY 216
              C P SS+   +FY SIYL+AFGYGGHQPTLAT GADQFDE+ P+E  SKT+FF YFY
Sbjct: 121 TTLCSPSSSVGLGVFYSSIYLVAFGYGGHQPTLATLGADQFDETNPREMNSKTVFFSYFY 180

Query: 217 FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPR 276
           F LN+GSLFSNTILVY+EDSGKWTLGFLVS  SA+IAL+ +L G+ GYR++KPCGNPLPR
Sbjct: 181 FALNLGSLFSNTILVYFEDSGKWTLGFLVSTGSAIIALVIFLCGSSGYRHIKPCGNPLPR 240

Query: 277 VAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLA 336
           VAQVF+AA RKW+VVVP N D LYE+ G ESAIKGSRKILHSNEIEFLDKAAT+ + D+ 
Sbjct: 241 VAQVFVAAFRKWDVVVPENGDGLYELEGSESAIKGSRKILHSNEIEFLDKAATMIEADMV 300

Query: 337 GPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRL 396
            P NPW+LCTVTQVEEAKCV+KMLPIWLCTIIYSV+FTQMASLFVEQGDVMN  IG F +
Sbjct: 301 DP-NPWRLCTVTQVEEAKCVIKMLPIWLCTIIYSVIFTQMASLFVEQGDVMNRKIGNFEI 359

Query: 397 PAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGA 456
           PAASMSAFDI SVL+CTGIYR+ILVP++GKL GNPKG+SELQRMGIGLIIG+ AMIAAG 
Sbjct: 360 PAASMSAFDIFSVLLCTGIYRQILVPISGKLTGNPKGMSELQRMGIGLIIGIAAMIAAGL 419

Query: 457 TEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL 516
           TE+ RL+ +SP E+ASSLSIFWQ PQYVLVGASEVFMYVGQLEFFNGQAPDGIKS GSSL
Sbjct: 420 TELGRLRRVSPNEEASSLSIFWQTPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSLGSSL 479

Query: 517 CMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYL 576
           CMASIS GNYVSSLLV +VMG+T +GD PGWIP+DLNTGH+DRFYFL+AVLT  DFVIY+
Sbjct: 480 CMASISLGNYVSSLLVNIVMGVTTRGDNPGWIPEDLNTGHLDRFYFLIAVLTVIDFVIYV 539

Query: 577 ICANWYKGINLDEDSCEKEMEMKLDEDD 604
            CA WYK INL+        E K D++D
Sbjct: 540 FCAKWYKSINLE------SFEKKKDQED 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445161|ref|XP_003592858.1| Peptide transporter PTR1 [Medicago truncatula] gi|355481906|gb|AES63109.1| Peptide transporter PTR1 [Medicago truncatula]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/579 (71%), Positives = 475/579 (82%), Gaps = 13/579 (2%)

Query: 28  ANKNNKDEKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVL 87
            N+N ++E  +    R N   E  KGG K A++LL NQ LATLAFFGVGVNLVLFLTRVL
Sbjct: 3   GNENYREEVVMEESGRAN---ENKKGGTKVATLLLVNQALATLAFFGVGVNLVLFLTRVL 59

Query: 88  QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSF-L 146
            Q+NA AANNVSKWTGTVYM SL+GAFLSDSYWGRYLTC +FQL FV+GL L  + S+  
Sbjct: 60  GQDNAEAANNVSKWTGTVYMFSLVGAFLSDSYWGRYLTCTIFQLFFVLGLALSCLSSWRF 119

Query: 147 MIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQ 206
           +I P+GCG+G I CKP SSI  +IFY SIYL+AFGYGGHQPTLATFGADQ+DE  PKER 
Sbjct: 120 LINPSGCGNGHIPCKP-SSIGVSIFYFSIYLVAFGYGGHQPTLATFGADQYDERNPKERS 178

Query: 207 SKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRY 266
            K  FFCYFYF LNVGSLFSNT+LVYYED+GKWT+GF +SL SA+IALL++L G+P YRY
Sbjct: 179 LKVAFFCYFYFSLNVGSLFSNTVLVYYEDTGKWTMGFFISLISAIIALLTFLSGSPKYRY 238

Query: 267 VKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDK 326
           +KP GNP+ RVAQVF AAARKW+V  PA +D+L+EV G  SAIKG RKILHS++   +DK
Sbjct: 239 LKPSGNPVVRVAQVFTAAARKWDVA-PAKADKLFEVLGSRSAIKGCRKILHSDDFRLMDK 297

Query: 327 AATITDNDLAG-PKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGD 385
           AATIT ND      NPWKLCTVTQVEE KCVL+MLPIWLCTI YSVVFTQMASLFVEQGD
Sbjct: 298 AATITKNDDEQIGNNPWKLCTVTQVEETKCVLRMLPIWLCTICYSVVFTQMASLFVEQGD 357

Query: 386 VMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLI 445
           VMNS+IGEF LPAASMS FDICSVL+CT IYR ILVP+ G+L GN +G+SEL+RMGIGLI
Sbjct: 358 VMNSNIGEFHLPAASMSVFDICSVLVCTVIYRTILVPLVGRLIGNTRGISELERMGIGLI 417

Query: 446 IGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQA 505
           I ML+M+A+G TE+ RL+ I PG+K SS+SIF+QIPQYVL+GASEVFMYVGQLEFFNGQA
Sbjct: 418 IAMLSMVASGMTEMVRLRNIIPGQKRSSMSIFYQIPQYVLIGASEVFMYVGQLEFFNGQA 477

Query: 506 PDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLA 565
           PDGIKSFGSSLCMASIS GNYVSS+LV +VM ITA+G+  GWIP++LN GHMDRF+FLLA
Sbjct: 478 PDGIKSFGSSLCMASISLGNYVSSMLVHVVMKITARGNDKGWIPENLNKGHMDRFFFLLA 537

Query: 566 VLTAFDFVIYLICANWYKGINLDEDSCEKEMEMKLDEDD 604
            L  FDFVIYL CA WYK IN+  D  E      LD+DD
Sbjct: 538 GLVVFDFVIYLFCAKWYKSINVQGDQEE------LDDDD 570

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502220|ref|XP_004161579.1| PREDICTED: LOW QUALITY PROTEIN: putative peptide/nitrate transporter At5g19640-like [Cucumis sativus]

 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/596 (70%), Positives = 486/596 (81%), Gaps = 14/596 (2%)

Query: 9   NQITL------KVTDENISTGQAQAANKNNKDE-----KKLTSFIRKNLIHEKNKGGWKY 57
            Q+TL      K   E +S  + +A N+ N+D+     K ++ ++ +     KN GGWK 
Sbjct: 44  EQVTLALIKFRKKIAEVVSLREGEAVNEENRDQNEDEPKTVSRYMERPTTVSKNVGGWKL 103

Query: 58  ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSD 117
           A++LL NQ LATLAFFGV VNLVLFLTRVL QE+A AAN VSKWTGTVY+CSL+GAF+SD
Sbjct: 104 ATLLLVNQALATLAFFGVAVNLVLFLTRVLDQESAIAANGVSKWTGTVYLCSLVGAFISD 163

Query: 118 SYWGRYLTCAVFQLIFVVGLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIY 176
           SYWGRY TCAVFQ+IFV GL LLS+ S   ++KP GCG+G + C P S I  AIFYLSIY
Sbjct: 164 SYWGRYATCAVFQVIFVFGLGLLSLTSGMFLLKPMGCGNGTLECMPTSKIGVAIFYLSIY 223

Query: 177 LIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS 236
           +IAFGYGGHQPTLATFGADQFD+S PK   +K+ FF YFYF LN GSLFSNTILVY+ED+
Sbjct: 224 MIAFGYGGHQPTLATFGADQFDDSIPKYANAKSAFFSYFYFALNFGSLFSNTILVYFEDT 283

Query: 237 GKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANS 296
           G WT+GF VSL SAV+AL+ YL+GT  YRY+KPCGNPLPRVAQVF+AA +K + VVPAN 
Sbjct: 284 GHWTVGFYVSLGSAVLALILYLLGTKRYRYLKPCGNPLPRVAQVFMAAIKK-SKVVPANG 342

Query: 297 DELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCV 356
           DELYEV GPESAIKGSRKILHSN   FLDKAATITD D    KNPW LCTVTQVEEAKC+
Sbjct: 343 DELYEVDGPESAIKGSRKILHSNGCRFLDKAATITDEDTKESKNPWNLCTVTQVEEAKCL 402

Query: 357 LKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHI-GEFRLPAASMSAFDICSVLICTGI 415
           ++MLPIW+CTI+YSVVF QMASLFV+QGDVM+S I G F LPAASMSAFDICSVL+ TG+
Sbjct: 403 IRMLPIWVCTIMYSVVFAQMASLFVQQGDVMDSTIVGGFHLPAASMSAFDICSVLVSTGL 462

Query: 416 YRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLS 475
           YR+ILVP+AG+L+GNPKGL+ELQRMG GL+I MLAMIAA ATEI+RLK++ PG+K SSLS
Sbjct: 463 YRQILVPLAGRLSGNPKGLTELQRMGTGLVIAMLAMIAAAATEIERLKHVVPGQKHSSLS 522

Query: 476 IFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMV 535
           IFWQIPQY+LVG SEVFMYVGQLEFFN Q+PDGIKS GSSLCMASIS GN+ SSLLV +V
Sbjct: 523 IFWQIPQYILVGCSEVFMYVGQLEFFNSQSPDGIKSLGSSLCMASISLGNFGSSLLVYIV 582

Query: 536 MGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDS 591
           M IT K + PGWIPDDLN+GH+DRFYFL+A LTA DF IYL  A WYK I +D+ S
Sbjct: 583 MEITRKEESPGWIPDDLNSGHVDRFYFLIAALTAIDFFIYLYGAKWYKFIQMDDIS 638

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
TAIR|locus:2183194	609	AT5G19640 [Arabidopsis thalian	0.886	0.886	0.644	4.9e-188
TAIR|locus:2033776	614	NRT1.5 "nitrate transporter 1.	0.883	0.876	0.566	3.1e-163
TAIR|locus:2119058	589	NRT1.8 "NITRATE TRANSPORTER 1.	0.873	0.903	0.561	2.7e-155
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.885	0.945	0.418	3.3e-118
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.873	0.901	0.412	2.5e-113
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.876	0.912	0.407	8.7e-111
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.901	0.963	0.390	1e-109
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.384	0.429	0.403	1.6e-94
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.862	0.909	0.360	1.3e-91
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.866	0.894	0.366	4.5e-91

TAIR|locus:2183194 AT5G19640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1823 (646.8 bits), Expect = 4.9e-188, P = 4.9e-188
 Identities = 359/557 (64%), Positives = 412/557 (73%)

Query:    40 SFIRKNLI--HEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANN 97
             S ++K ++   EK  GGW  A ILL NQGLATLAFFGVGVNLVLFLTRV+ Q NA AANN
Sbjct:    46 SDLQKKMMKKEEKKNGGWTNAIILLVNQGLATLAFFGVGVNLVLFLTRVMGQGNAEAANN 105

Query:    98 VSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXX-XXMIKPTGCGDG 156
             VSKWTGTVYM SL+GAFLSDSYWGRYLTC +FQ                 +IKP GCGDG
Sbjct:   106 VSKWTGTVYMFSLVGAFLSDSYWGRYLTCTIFQVIFVIGVGLLSFVSWFFLIKPRGCGDG 165

Query:   157 FISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY 216
              + C P SS+  AIFYLS+YL+AFGYGGHQPTLATFGADQ D+ K     SK  FF YFY
Sbjct:   166 DLECNPPSSLGVAIFYLSVYLVAFGYGGHQPTLATFGADQLDDDK----NSKAAFFSYFY 221

Query:   217 FFLNVGSLFSNTILVYYEDSGKWTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPR 276
             F LNVG+LFSNTILVY+ED G WT GF                 T  YRYVKPCGNPLPR
Sbjct:   222 FALNVGALFSNTILVYFEDKGLWTEGFLVSLGSAIVALVAFLAPTRQYRYVKPCGNPLPR 281

Query:   277 VAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLA 336
             VAQVF+A ARKW+VV P +  ELYE+ GPESAIKGSRKI HS +  FLD+AA IT+ND  
Sbjct:   282 VAQVFVATARKWSVVRPGDPHELYELEGPESAIKGSRKIFHSTKFLFLDRAAVITENDRN 341

Query:   337 GPK-NPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFR 395
             G + N W+LC+VTQVEEAKCV+K+LPIWLCTIIYSV+FTQMASLFVEQGDVMN+++G+F 
Sbjct:   342 GTRSNAWRLCSVTQVEEAKCVMKLLPIWLCTIIYSVIFTQMASLFVEQGDVMNAYVGKFH 401

Query:   396 LPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXXXXXXXXXXXXXX 455
             +PAASMS FDI SV + TGIYR I+ P        P   +EL R                
Sbjct:   402 IPAASMSVFDIFSVFVSTGIYRHIIFPYV-----RP---TELMRMGIGLIIGIMAMVAAG 453

Query:   456 XTEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSS 515
              TEIQRLK + PG+K S L+I WQIPQYVLVGASEVFMYVGQLEFFNGQAPDG+K+ GSS
Sbjct:   454 LTEIQRLKRVVPGQKESELTILWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGLKNLGSS 513

Query:   516 LCMASISFGNYVSSLLVVMVMGITAKGDK-PGWIPDDLNTGHMDRFYFLLAVLTAFDFVI 574
             LCMAS++ GNYVSSL+V +VM IT +G+  PGWIP++LN GHMDRFYFL+A L A DFV+
Sbjct:   514 LCMASMALGNYVSSLMVNIVMAITKRGENSPGWIPENLNEGHMDRFYFLIAALAAIDFVV 573

Query:   575 YLICANWYKGINLDEDS 591
             YLI A WY+ I+ DEDS
Sbjct:   574 YLIFAKWYQPISHDEDS 590

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1589 (564.4 bits), Expect = 3.1e-163, P = 3.1e-163
 Identities = 312/551 (56%), Positives = 375/551 (68%)

Query:    51 NKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSL 110
             N G W    ++L NQGLATLAFFGVGVNLVLFLTRVLQQ NA+AANNVSKWTGTVY+ SL
Sbjct:    37 NSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSL 96

Query:   111 IGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXX-MIKPTGCGDGFISCKPLSSIFAA 169
             +GAFLSDSYWGRY TCA+FQ                 +I+P GCGD    C   S +   
Sbjct:    97 VGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGCGDEVTPCGSHSMMEIT 156

Query:   170 IFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI 229
             +FY SIYLIA GYGG+QP +AT GADQFDE  PKE  SK  FF YFY  LN+GSLFSNTI
Sbjct:   157 MFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYLALNLGSLFSNTI 216

Query:   230 LVYYEDSGKWTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPRVAQVFIAAARKWN 289
             L Y+ED G W LGF               +GTP YRY KP GNPL R  QV +AA +K +
Sbjct:   217 LGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRFCQVLVAATKKSS 276

Query:   290 VVVPANS-DELYE--VAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPK----NPW 342
             V  P    +E+Y+    G  +++   R+I+H++E +FLDKAA IT  DL   K    NPW
Sbjct:   277 VEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITARDLDDKKQDSVNPW 336

Query:   343 KLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMS 402
             +LC VTQVEE KC+L+++PIWLCTIIYSVVFTQMASLFVEQG  MN+ + +F++P ASMS
Sbjct:   337 RLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTSVSDFKIPPASMS 396

Query:   403 AFDICSVLICTGIYRKILVPVAGKLNGN-PKGLSELQRXXXXXXXXXXXXXXXXXTEIQR 461
             +FDI SV +   +YR++L PVA +   N  KG++EL R                  E  R
Sbjct:   397 SFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAVIAMIAAGIVECYR 456

Query:   462 LKYISPG----EKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC 517
             LKY        + +SSLSIFWQ PQY L+GASEVFMYVGQLEFFN Q PDG+KSFGS+LC
Sbjct:   457 LKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQTPDGLKSFGSALC 516

Query:   518 MASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLI 577
             M S+S GN+VSSLLV MV+ I+ +   PGWIP +LN GH+DRFYFLLA LT+ D V+Y+ 
Sbjct:   517 MMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLLAALTSIDLVVYIA 576

Query:   578 CANWYKGINLD 588
             CA WYK I L+
Sbjct:   577 CAKWYKPIQLE 587

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP;RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0042128 "nitrate assimilation" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
 Identities = 308/549 (56%), Positives = 369/549 (67%)

Query:    51 NKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSL 110
             N G W  A ++L NQGLATLAFFGVGVNLVLFLTRV+ Q+NA AANNVSKWTGTVY+ SL
Sbjct:    28 NTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEAANNVSKWTGTVYIFSL 87

Query:   111 IGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXXMI-KPTGCGDGFISCKPLSSIFAA 169
             +GAFLSDSYWGRY TCA+FQ                ++ +P+GCG     CKP S+    
Sbjct:    88 LGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGCGVEDSPCKPHSTFKTV 147

Query:   170 IFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI 229
             +FYLS+YLIA GYGG+QP +ATFGADQFD     E  SK  FF YFY  LN+GSLFSNT+
Sbjct:   148 LFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFSYFYLALNLGSLFSNTV 207

Query:   230 LVYYEDSGKWTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPRVAQVFIAAARKWN 289
             L Y+ED G+W LGF               +GTP YR+  P  +P  R  QV +AA RK  
Sbjct:   208 LGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESPWSRFCQVLVAATRKAK 267

Query:   290 VVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLA-----GPK-NPWK 343
             + V      LY+    E+   G +KILH+    FLD+AA +T +D A     G K +PW+
Sbjct:   268 IDVHHEELNLYD---SETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKVESGSKYDPWR 324

Query:   344 LCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSA 403
             LC+VTQVEE KCVL++LPIWLCTI+YSVVFTQMASLFV QG  M ++I  FR+PA+SMS+
Sbjct:   325 LCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNIKNFRIPASSMSS 384

Query:   404 FDICSVLICTGIYRKILVPVAGKLNGNP--KGLSELQRXXXXXXXXXXXXXXXXXTEIQR 461
             FDI SV      YR+ L P+  +LN     KGL+ELQR                  EI R
Sbjct:   385 FDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAMISAGIVEIHR 444

Query:   462 LKYISPGE-----KASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL 516
             LK   P        +S+LSIFWQ+PQY+L+GASEVFMYVGQLEFFN QAP G+KSF S+L
Sbjct:   445 LKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAPTGLKSFASAL 504

Query:   517 CMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYL 576
             CMASIS GNYVSSLLV +VM I+   D  GWIP++LN GH++RFYFLLA LTA DFV+YL
Sbjct:   505 CMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAGLTAADFVVYL 564

Query:   577 ICANWYKGI 585
             ICA WYK I
Sbjct:   565 ICAKWYKYI 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 230/550 (41%), Positives = 342/550 (62%)

Query:    42 IRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKW 101
             I KN  +++  G WK    +L N+    LA++G+G NLV +L   L Q NA AANNV+ W
Sbjct:    15 IHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNW 74

Query:   102 TGTVYMCSLIGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXXM-IKPTGCGDGFISC 160
             +GT Y+  LIGAF++D+Y GRY T A F                   +KP  C     +C
Sbjct:    75 SGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD--TC 132

Query:   161 KPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLN 220
              P SS   A+F++++Y+IA G GG +P +++FGADQFDE+   E+  K+ FF +FYF +N
Sbjct:   133 HPNSSQ-TAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSIN 191

Query:   221 VGSLFSNTILVYYEDSGKWTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPRVAQV 280
             VG+L + T+LV+ + +  W  GF                G+  YR  +P G+PL R+ QV
Sbjct:   192 VGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQV 251

Query:   281 FIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLA--GP 338
              +AA RK +V VP +   L+E A  ES IKGSRK++H++ ++F DKAA  + +D    G 
Sbjct:   252 IVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGE 311

Query:   339 KNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGE-FRLP 397
              NPW+LC+VTQVEE K ++ +LP+W   I+++ V++QM+++FV QG+ M+ H+G+ F +P
Sbjct:   312 VNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIP 371

Query:   398 AASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXXXXXXXXXXXXXXXT 457
             +AS+S FD  SVL  T +Y + ++P+A K   N +G ++LQR                  
Sbjct:   372 SASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVL 431

Query:   458 EIQRLKYISP----GEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFG 513
             E+ RL Y+       +K   +SIFWQIPQY+L+G +EVF ++GQLEFF  QAPD ++S  
Sbjct:   432 EVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLC 491

Query:   514 SSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFV 573
             S+L + +++ GNY+S++LV +VM IT K  KPGWIPD+LN GH+D F++LLA L+  +F+
Sbjct:   492 SALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFL 551

Query:   574 IYLICANWYK 583
             +YL  +  YK
Sbjct:   552 VYLWISKRYK 561

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 223/540 (41%), Positives = 323/540 (59%)

Query:    49 EKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMC 108
             +K  G WK    +L N+    LA++G+  NL+ + T  L + N +AA++V  W GT Y+ 
Sbjct:    50 KKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYIT 109

Query:   109 SLIGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXX-MIKPTGC-GDGFISCKPLSSI 166
              LIGA ++DSYWGRY T A F                  ++KP  C G     C P +++
Sbjct:   110 PLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPATTV 169

Query:   167 FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS 226
               A+F+  +YLIA G GG +P +++FGADQFD++ P+ER  K  FF +FYF +N+GS  S
Sbjct:   170 QYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIGSFIS 229

Query:   227 NTILVYYEDSGKWTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPRVAQVFIAAAR 286
             +T+LV+ +++  W LGF               +GTP YR+ KP G+P+ RV QV +AA R
Sbjct:   230 STLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLVAAYR 289

Query:   287 KWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDL-AGP-KNPWKL 344
             K  + +P +   LYE     S I GSRKI H++  +FLDKAA I++ +  +G   NPWKL
Sbjct:   290 KLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESKSGAFSNPWKL 349

Query:   345 CTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAF 404
             CTVTQVEE K +++M PIW   I+YSV+++Q+++LFV+QG  MN  I  F +P AS   F
Sbjct:   350 CTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVF 409

Query:   405 DICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXXXXXXXXXXXXXXXTEIQRLKY 464
             D   VLI   IY + LVP   +  G PKGL++LQR                  E  RL+ 
Sbjct:   410 DTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQL 469

Query:   465 ISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFG 524
                 +   ++SIFWQIPQY+L+G +EVF ++G++EFF  ++PD ++S  S+L + + + G
Sbjct:   470 ---AQDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVG 526

Query:   525 NYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIY-LICANWYK 583
             +Y+SSL++ +V   TA G K GW+PDDLN GH+D F++LL  L   +  +Y LIC    K
Sbjct:   527 SYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVNIPVYALICVKHTK 586

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 222/545 (40%), Positives = 326/545 (59%)

Query:    47 IHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVY 106
             + EK  G WK    +L N+    LA++G+  NL+ +LT  L Q N +AA NV+ W GT Y
Sbjct:    38 LKEKT-GNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCY 96

Query:   107 MCSLIGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXX-MIKPTGCGDGFISCKPLSS 165
             +  LIGA L+D+YWGRY T A F                   +KP  C   F  C   + 
Sbjct:    97 LTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDF--CPSATP 154

Query:   166 IFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLF 225
                A+F+  +YLIA G GG +P +++FGADQFD++  +ER  K  FF +FYF +N+G+L 
Sbjct:   155 AQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALV 214

Query:   226 SNTILVYYEDSGKWTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPRVAQVFIAAA 285
             S+++LV+ +++  W LGF                GTP YR+ KP G+P+ R++QV +A+ 
Sbjct:   215 SSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASF 274

Query:   286 RKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDL-AGP-KNPWK 343
             RK +V VP ++  LYE     SAI GSRKI H+++ ++LDKAA I++ +  +G   N W+
Sbjct:   275 RKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWR 334

Query:   344 LCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSA 403
             LCTVTQVEE K +++M PIW   II+S V+ QM+++FV+QG  MN  IG F+LP A++  
Sbjct:   335 LCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGT 394

Query:   404 FDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXXXXXXXXXXXXXXXTEIQRLK 463
             FD  SV+I   +Y + +VP+A K  G  KG +E+QR                  EI RL 
Sbjct:   395 FDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLH 454

Query:   464 YISP-GEKASS----LSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCM 518
               +  G   S     +S+ WQIPQY ++GA+EVF ++GQLEFF  Q+PD ++S  S+L +
Sbjct:   455 MANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALAL 514

Query:   519 ASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLIC 578
              + + GNY+SSL++ +V   T +  + GWI D+LN+GH+D F++LLA L+  +  +Y   
Sbjct:   515 LTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFS 574

Query:   579 ANWYK 583
             A  YK
Sbjct:   575 AARYK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 220/563 (39%), Positives = 336/563 (59%)

Query:    30 KNNKD--EKKLTSFIRKNLIHEKNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVL 87
             +++KD   K  T  I K   ++   G WK    +L  +    LA++G+  NL+ +L + +
Sbjct:     2 EDDKDIYTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQM 61

Query:    88 QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXXM 147
               EN +A+ +VS W+GT Y   LIGAF++D+Y GRY T A F                  
Sbjct:    62 NMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVP 121

Query:   148 -IKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQ 206
              + PT  G+   +C   +    AI ++++YLIA G GG +P +++FGADQFD++  KE++
Sbjct:   122 GLTPTCSGE---TCHATAGQ-TAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKE 177

Query:   207 SKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFXXXXXXXXXXXXXXXMGTPGYRY 266
             SK+ FF +FYF +NVG++ ++++LV+ + +  W  G                 G+  YR 
Sbjct:   178 SKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRL 237

Query:   267 VKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDK 326
              KP G+PL R+ QV +A+ RK  V +P +   LYE    ES+I GSRK+ H+  + F DK
Sbjct:   238 QKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDK 297

Query:   327 AA--TITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQG 384
             AA  T +DN  A   + WKLCTVTQVEE K ++++LPIW   I+++ V++QM ++FV QG
Sbjct:   298 AAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQG 357

Query:   385 DVMNSHIG-EFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXX 443
             + ++ H+G  F++P+AS+S FD  SVL    +Y K++VP A K  G+ +G ++LQR    
Sbjct:   358 NTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIG 417

Query:   444 XXXXXXXXXXXXXTEIQRLKYISP----GEKASSLSIFWQIPQYVLVGASEVFMYVGQLE 499
                           E+ RL Y+       E+   ++IFWQ+PQY LVG +EVF ++GQLE
Sbjct:   418 LVISIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLE 477

Query:   500 FFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDR 559
             FF  QAPD ++S  S+L + +I+FGNY+S+ LV +V  +T  G +PGWI  +LN GH+D 
Sbjct:   478 FFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDY 537

Query:   560 FYFLLAVLTAFDFVIYLICANWY 582
             F++LLA L+  +F++YL  A WY
Sbjct:   538 FFWLLAGLSFLNFLVYLWIAKWY 560

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
 Identities = 98/243 (40%), Positives = 148/243 (60%)

Query:   340 NPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAA 399
             NPWKLCTVTQVEE K +L+++PIW   II+SV+ +Q+ +LFV+QG  M   IG F +P A
Sbjct:   295 NPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIGLFEIPPA 354

Query:   400 SMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXXXXXXXXXXXXXXXTEI 459
             ++  FD  SVLI   IY +++VP+  +  G  KG +ELQR                  E 
Sbjct:   355 TLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLTFAAIVET 414

Query:   460 QRLKYISPGEKASS-----LSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGS 514
              RL+     +   S     L+IFWQIPQY L+G + VF +VG++EFF  Q+PD ++S  S
Sbjct:   415 VRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPDSMRSLCS 474

Query:   515 SLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIP-DDLNTGHMDRFYFLLAVLTAFDFV 573
             +  + + + GNY+SSL++ +V  ++ K     WIP D++N GH+D F++LL  L + +  
Sbjct:   475 AWALLTTTLGNYLSSLIITLVAYLSGKDC---WIPSDNINNGHLDYFFWLLVSLGSVNIP 531

Query:   574 IYL 576
             +++
Sbjct:   532 VFV 534

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 197/546 (36%), Positives = 306/546 (56%)

Query:    49 EKNK-GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYM 107
             +K+K GGW  A+++L  + +  L+  G+ VNLV +L   +   ++ +AN V+ + GT ++
Sbjct:    21 DKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIVTDFMGTSFL 80

Query:   108 CSLIGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXXM-IKPTGCGDGFISCKPLSSI 166
               L+G FL+DS+ GR+ T  +F                   ++P  C  G  +C P ++ 
Sbjct:    81 LCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTCHHGE-ACIPATAF 139

Query:   167 FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS 226
                I Y+S+YLIA G GG + +++ FG+DQFD+  PKE+     FF  F+FF+++G+L +
Sbjct:   140 QMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFNRFFFFISMGTLLA 199

Query:   227 NTILVYYEDS-GK-WTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPRVAQVFIAA 284
              T+LVY +D  G+ W  G                 GT  YRY K  G+P+ ++ QV  AA
Sbjct:   200 VTVLVYMQDEVGRSWAYGICTVSMAIAIVIFL--CGTKRYRYKKSQGSPVVQIFQVIAAA 257

Query:   285 ARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDND----LAGPK- 339
              RK  + +P +   LYE   PE    G R I H+++   LDKAA + + D    L G   
Sbjct:   258 FRKRKMELPQSIVYLYE-DNPE----GIR-IEHTDQFHLLDKAAIVAEGDFEQTLDGVAI 311

Query:   340 -NPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPA 398
              NPWKL +VT+VEE K ++++LPIW  TII+   + QM +  VEQ   M  +IG F++PA
Sbjct:   312 PNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNIGSFKIPA 371

Query:   399 ASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXXXXXXXXXXXXXXXTE 458
              S++ F + ++LI   +Y + ++P   K  G P G S LQR                  E
Sbjct:   372 GSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLVLSTAGMAAAALVE 430

Query:   459 IQRLKYI-SPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC 517
              +RL    S  +K   +S+F  +PQ+ LVGA E F+Y GQL+FF  Q+P G+K+  + L 
Sbjct:   431 QKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKGMKTMSTGLF 490

Query:   518 MASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLI 577
             + ++S G +VSS LV +V  +T+     GW+ D++N G +D FY+LL +L+  +FV+Y+I
Sbjct:   491 LTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILSGINFVVYII 550

Query:   578 CANWYK 583
             CA W+K
Sbjct:   551 CALWFK 556

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 201/549 (36%), Positives = 304/549 (55%)

Query:    49 EKNK-GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYM 107
             +++K GGW  A+++L  + +  L   G+GVNLV +LT  +   NA AAN V+ + GT +M
Sbjct:    24 DRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFM 83

Query:   108 CSLIGAFLSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXXM-IKPTGCGDGFIS-CKPLSS 165
               L+G F++D++ GRYLT A+F                   ++P  C     S C+  S 
Sbjct:    84 LCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASG 143

Query:   166 IFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLF 225
             I   + YL++YL A G GG + +++ FG+DQFDE++PKER   T FF  F+F +NVGSL 
Sbjct:   144 IQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLL 203

Query:   226 SNTILVYYEDS-G-KWTLGFXXXXXXXXXXXXXXXMGTPGYRYVKPCGNPLPRVAQVFIA 283
             + T+LVY +D  G KW  G+                GT  YR+ K  G+P+ +VA V +A
Sbjct:   204 AVTVLVYVQDDVGRKW--GYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVA 261

Query:   284 AARKWNVVVPANSDELYEV---AGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPK- 339
             A R   + +PA+   LY+V      E ++KG +K+ H+ +   LDKAA I D + AG   
Sbjct:   262 AWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAA-IRDQE-AGVTS 319

Query:   340 ---NPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRL 396
                N W L T+T VEE K +++MLPIW   I++  V  Q+ +L V Q + ++  IG F +
Sbjct:   320 NVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEI 379

Query:   397 PAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRXXXXXXXXXXXXXXXXX 456
             P ASM+ F +  +L+ T +Y ++ + +  KL   P GL  LQR                 
Sbjct:   380 PPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAAL 439

Query:   457 TEIQRLKYI---SPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFG 513
              E++RL+      P  K   L  +  IPQY++VG  E  +Y GQL+FF  + P G+K   
Sbjct:   440 VELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMS 499

Query:   514 SSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFV 573
             + L +++++ G + SS+LV +V   T K   P WI DDLN G +  FY+L+AVL A +F+
Sbjct:   500 TGLLLSTLALGFFFSSVLVTIVEKFTGKAH-P-WIADDLNKGRLYNFYWLVAVLVALNFL 557

Query:   574 IYLICANWY 582
             I+L+ + WY
Sbjct:   558 IFLVFSKWY 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E9B5	PTR51_ARATH	No assigned EC number	0.7064	0.8702	0.8702	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031907 hypothetical protein (611 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	609
pfam00854	372	pfam00854, PTR2, POT family	5e-67
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	5e-26
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-25
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	2e-07
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-06
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	7e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  222 bits (568), Expect = 5e-67
 Identities = 117/408 (28%), Positives = 184/408 (45%), Gaps = 45/408 (11%)

Query: 123 YLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGY 182
           + T  +  +I+ +G VLL++ +                  LS +  A+FY+ +YLIA G 
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGA--------------IPPSLSPVQVALFYIGLYLIALGT 46

Query: 183 GGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLG 242
           GG +P ++ FGADQFDE++   R     FF +FYF +N GSL +  I  Y + +  + LG
Sbjct: 47  GGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQNVGYPLG 103

Query: 243 FLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVV--VPANSDELY 300
           F +     ++ALL +L+G+  Y+   P G     V   FI  A   N    +P +S  LY
Sbjct: 104 FGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY 163

Query: 301 EVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKML 360
                 +    S+  +H+           +    +  PK          V   + +L ML
Sbjct: 164 WALEKYNKRSISQTKVHTR----------VAVIFIPLPKFWALFDQQGSVWLLQAILLML 213

Query: 361 PIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGE-FRLPAASMSAFDICSVLICTGIYRKI 419
           PIW   I+   ++TQ+A+L V Q   M+  I   F +P AS  +F+  +VLI   I   +
Sbjct: 214 PIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFL 273

Query: 420 LVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYI------SPGEKASS 473
           + P+        +GL+  QR G+G+ I ++A   A   E +R +Y       SPG     
Sbjct: 274 VYPLL----RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTV-P 328

Query: 474 LSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASI 521
           L I W +P+  + G        G LEF     P  + S  + L  A+ 
Sbjct: 329 LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  111 bits (280), Expect = 5e-26
 Identities = 96/498 (19%), Positives = 183/498 (36%), Gaps = 83/498 (16%)

Query: 71  AFFGVGVNLVLFLTRVLQQEN----ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTC 126
           +++G+   L+L+L   L         +A    S +   VY+  +IG +L+D   G   T 
Sbjct: 36  SYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95

Query: 127 AVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAI-FYLSIYLIAFGYGGH 185
            +  ++  +G ++L+                     +SS+      Y+ + LI  G G  
Sbjct: 96  VLGAILMAIGHLVLA---------------------ISSVSGPGGLYIGLALIIVGTGLF 134

Query: 186 QPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLV 245
           +P +++   + + +  P     +   F  FY  +N+GSL +  I      +  W +GF +
Sbjct: 135 KPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190

Query: 246 SLASAVIALLSYLMG------TPGYRYVKPC--GNPLPRVAQVF--IAAARKWNVVVPAN 295
           +    +I L+ +L+G        G     P      LP +  +   I AA    ++   N
Sbjct: 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLL---N 247

Query: 296 SDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKC 355
            +         S +     IL               +                  +E + 
Sbjct: 248 QNTF-------SGVLLVISILI--------AIIYFAEAF------RSPKVF----DERRR 282

Query: 356 VLKMLPIWLCTIIYSVVFTQMASLFVEQGDVM-NSHIGEFRLPAASMSAFDICSVLICTG 414
           +L  +P++L  +I+  ++ QM S      D   N  I  F +P A   + +   +++ + 
Sbjct: 283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSP 342

Query: 415 IYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSL 474
           I   +      KL    K  S   +  +GLI+  L  +      I        G  +  +
Sbjct: 343 ILAAL----WTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF------GGPSGLV 392

Query: 475 SIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGN----YVSSL 530
           S++W +  YVL    E+F+    L      AP  +KSF  ++   +++ G      V+ L
Sbjct: 393 SVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452

Query: 531 LVVMVMGITAKGDKPGWI 548
             V     TA  +   + 
Sbjct: 453 TAVTDPAYTAFIEGRVFG 470

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  111 bits (279), Expect = 1e-25
 Identities = 99/415 (23%), Positives = 169/415 (40%), Gaps = 65/415 (15%)

Query: 72  FFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL 131
           ++G+   LVL+L   L      A N    +T   Y+  LIGA ++DS+ G++ T     L
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLAT 191
           ++VVG  L S+ +                 PL    +    + + LIA G GG +P ++ 
Sbjct: 63  VYVVGHALASLGAVP-----------SLGHPLHDALS---LVGLALIALGTGGIKPCVSA 108

Query: 192 FGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI-------LVYYEDSGKWTLGFL 244
           FG DQF+E +   R     FF +FYF +N GSLFS  I       +  +     + L F 
Sbjct: 109 FGGDQFEERQLSLRFR---FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165

Query: 245 VSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAG 304
           V      +AL+ + MG+  Y+   P GN + +V +  + A +K                 
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR---------------- 209

Query: 305 PESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWL 364
                    +      + +LD AA      +              +   K +L++L +++
Sbjct: 210 ------FRTRSEDWPRLHWLDWAAPKYLIRM--------------IRSTKRLLRVLFLFI 249

Query: 365 CTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVA 424
              ++  +F Q  S +  Q   M+  +G F +    M A +   VLI   I+  ++ P  
Sbjct: 250 PLPMFWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPAL 309

Query: 425 GKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQ 479
            K        + L++M +G+++  LA   A   + +    +     AS   IF Q
Sbjct: 310 AKCGTR---FTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEPSAS--IIFLQ 359

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 25/199 (12%)

Query: 70  LAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVF 129
            +F+G+   L+L+LT  L+ ++ +A    S +   VY+  ++G FL+D   G  +   + 
Sbjct: 23  FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82

Query: 130 QLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTL 189
            L+  +G V+L                       S I  +  YLS+ +I  GYG  +  +
Sbjct: 83  ALLMAIGHVVLGA---------------------SEIHPSFLYLSLAIIVCGYGLFKSNV 121

Query: 190 ATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLAS 249
           +    + ++ + P+        F   Y   NVGS+ +     Y ++   W +GF ++   
Sbjct: 122 SCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG 177

Query: 250 AVIALLSYLMGTPGYRYVK 268
            +  L+ +L G   + + +
Sbjct: 178 MIAGLVIFLCGNRHFTHTR 196

Length = 493

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 38/208 (18%), Positives = 80/208 (38%), Gaps = 27/208 (12%)

Query: 71  AFFGVGVNLVLFL--TRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAV 128
           +++G+   L ++L     L      A      ++  VY+ + +G +  D  WG   T  +
Sbjct: 25  SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84

Query: 129 FQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPT 188
             ++ ++G  +L++                      SI+  + +  +  IA G G  +  
Sbjct: 85  GGIVLMLGHFMLAM----------------------SIYPDLIFYGLGTIAVGSGLFKAN 122

Query: 189 LATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLA 248
            ++     ++      R      F  FY  +N+GS  S  +     ++  + +GF ++  
Sbjct: 123 PSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV 179

Query: 249 SAVIALLSYLMGTPGYRYVKPCGNPLPR 276
             VI LL++  G    R +    +PL  
Sbjct: 180 GMVIGLLTFFAGRHMLRDIGSVPDPLSG 207

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 472 SSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLL 531
           +++SI WQ+PQYVL  A EV   V  LEF   QAP  +KS   +L + +++ GN     +
Sbjct: 548 NTVSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGN-----I 602

Query: 532 VVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWY 582
           +V+++                N       + L + L      I+ I A  Y
Sbjct: 603 IVLIIAEFE------------NMAVQWAEFVLFSSLMLVVMAIFSILAYTY 641

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 30/197 (15%)

Query: 66  GLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLS---DSYWGR 122
            LA          L+ +L   LQ+    +A           +  ++GA L        GR
Sbjct: 181 ALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR 240

Query: 123 YLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGY 182
                   L+ ++GL+L ++   L+                 +   A+  +++ L+ FG 
Sbjct: 241 RR------LLLLIGLLLAALGLLLLA---------------LAPSLALLLVALLLLGFGL 279

Query: 183 GGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLG 242
           G   P L T  ++      P E +        F  F ++G      +     D+G +   
Sbjct: 280 GFAFPALLTLASELA----PPEARGTASGL--FNTFGSLGGALGPLLAGLLLDTGGYGGV 333

Query: 243 FLVSLASAVIALLSYLM 259
           FL+  A A++A L  L+
Sbjct: 334 FLILAALALLAALLLLL 350

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	609
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK12382	392	putative transporter; Provisional	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PRK10642	490	proline/glycine betaine transporter; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.91
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.91
PRK09705	393	cynX putative cyanate transporter; Provisional	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00898	505	2A0119 cation transport protein.	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
TIGR00891	405	2A0112 putative sialic acid transporter.	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
KOG0254	513	consensus Predicted transporter (major facilitator	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.89
PRK03699	394	putative transporter; Provisional	99.89
TIGR00895	398	2A0115 benzoate transport.	99.89
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.89
PRK03633	381	putative MFS family transporter protein; Provision	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.88
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.88
PRK15011	393	sugar efflux transporter B; Provisional	99.88
PRK11043	401	putative transporter; Provisional	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK09528	420	lacY galactoside permease; Reviewed	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.86
PRK11010	491	ampG muropeptide transporter; Validated	99.86
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.86
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.86
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.85
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.85
PRK10133	438	L-fucose transporter; Provisional	99.85
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.85
KOG2532	466	consensus Permease of the major facilitator superf	99.84
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.84
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.84
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.82
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.82
PRK11902	402	ampG muropeptide transporter; Reviewed	99.81
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.8
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.79
PRK09848	448	glucuronide transporter; Provisional	99.78
PRK10429	473	melibiose:sodium symporter; Provisional	99.78
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.76
PRK09669	444	putative symporter YagG; Provisional	99.75
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.73
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.73
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.72
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.72
KOG2615	451	consensus Permease of the major facilitator superf	99.72
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.71
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.71
TIGR00805	633	oat sodium-independent organic anion transporter.	99.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.68
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.68
PF13347	428	MFS_2: MFS/sugar transport protein	99.67
PRK11462	460	putative transporter; Provisional	99.67
KOG2533	495	consensus Permease of the major facilitator superf	99.65
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.64
PTZ00207	591	hypothetical protein; Provisional	99.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.64
PRK10642	490	proline/glycine betaine transporter; Provisional	99.6
COG2211	467	MelB Na+/melibiose symporter and related transport	99.6
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.49
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.49
PRK09952	438	shikimate transporter; Provisional	99.47
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.44
KOG2563	480	consensus Permease of the major facilitator superf	99.43
TIGR00893	399	2A0114 d-galactonate transporter.	99.41
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.41
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.4
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.38
PRK03699	394	putative transporter; Provisional	99.37
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.37
TIGR00891	405	2A0112 putative sialic acid transporter.	99.35
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.34
PRK09705	393	cynX putative cyanate transporter; Provisional	99.32
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
PRK09528	420	lacY galactoside permease; Reviewed	99.31
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.31
PRK11663	434	regulatory protein UhpC; Provisional	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.3
PRK12382	392	putative transporter; Provisional	99.3
PRK10489	417	enterobactin exporter EntS; Provisional	99.3
PRK03545	390	putative arabinose transporter; Provisional	99.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.28
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.28
PRK15075	434	citrate-proton symporter; Provisional	99.26
PRK11010	491	ampG muropeptide transporter; Validated	99.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.26
PRK03893	496	putative sialic acid transporter; Provisional	99.25
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.25
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.25
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.23
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.2
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.17
TIGR00900	365	2A0121 H+ Antiporter protein.	99.17
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.16
PRK10504	471	putative transporter; Provisional	99.16
TIGR00895	398	2A0115 benzoate transport.	99.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.16
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.15
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.14
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.11
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.11
PRK12307	426	putative sialic acid transporter; Provisional	99.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.11
PRK10091	382	MFS transport protein AraJ; Provisional	99.1
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.1
PLN00028	476	nitrate transmembrane transporter; Provisional	99.1
KOG3626	735	consensus Organic anion transporter [Secondary met	99.09
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.07
PRK11902	402	ampG muropeptide transporter; Reviewed	99.06
PRK10054	395	putative transporter; Provisional	99.06
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.05
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.04
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.04
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.04
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.03
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.03
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.02
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.98
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.96
PRK10133	438	L-fucose transporter; Provisional	98.95
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.92
PF13347	428	MFS_2: MFS/sugar transport protein	98.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.9
TIGR00901	356	2A0125 AmpG-related permease.	98.9
KOG2532	466	consensus Permease of the major facilitator superf	98.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.87
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.86
TIGR00898	505	2A0119 cation transport protein.	98.84
PRK09848	448	glucuronide transporter; Provisional	98.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.82
KOG0569	485	consensus Permease of the major facilitator superf	98.81
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.78
PRK11043	401	putative transporter; Provisional	98.77
PRK09669	444	putative symporter YagG; Provisional	98.68
KOG3762	618	consensus Predicted transporter [General function	98.68
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.68
PRK10429	473	melibiose:sodium symporter; Provisional	98.64
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.61
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.59
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.59
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.58
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.44
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.41
PRK11462	460	putative transporter; Provisional	98.39
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.37
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.35
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.34
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.34
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.32
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.32
COG0477	338	ProP Permeases of the major facilitator superfamil	98.31
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.3
COG2211	467	MelB Na+/melibiose symporter and related transport	98.29
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.28
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.23
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.22
KOG3762	618	consensus Predicted transporter [General function	98.21
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.17
KOG2533	495	consensus Permease of the major facilitator superf	98.13
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.1
TIGR00805	633	oat sodium-independent organic anion transporter.	98.06
KOG0637	498	consensus Sucrose transporter and related proteins	98.06
PF12832	77	MFS_1_like: MFS_1 like family	98.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.0
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.99
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.99
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.83
KOG0254	513	consensus Predicted transporter (major facilitator	97.77
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.74
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.69
PTZ00207	591	hypothetical protein; Provisional	97.68
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.62
KOG2615	451	consensus Permease of the major facilitator superf	97.5
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.48
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.44
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.11
PRK03612	521	spermidine synthase; Provisional	97.03
KOG2563	480	consensus Permease of the major facilitator superf	96.99
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.97
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.92
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.8
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.72
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.7
KOG3626	735	consensus Organic anion transporter [Secondary met	96.68
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.67
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.64
COG3202	509	ATP/ADP translocase [Energy production and convers	96.31
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.6
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.12
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.06
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.83
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.8
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.77
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.52
KOG0637	498	consensus Sucrose transporter and related proteins	93.23
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.92
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.42
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.53
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.88
KOG3810	433	consensus Micronutrient transporters (folate trans	89.51
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	89.47
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	88.14
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	85.33
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	84.02
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	81.87

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-42  Score=379.64  Aligned_cols=530  Identities=45%  Similarity=0.769  Sum_probs=469.2

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 039271           51 NKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQ  130 (609)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  130 (609)
                      ....|+....++..+.++.+++|++...+..|++++++.+...+...+..+.....+.++++++++|-|+||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-hhccCCCCCCC--CCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          131 LIFVVGLVLLSVLS-FLMIKPTGCGD--GFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       131 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      ++..+|..++.+.. .|...+++|+.  ..+.|..+.......++.++.+..+|.|+..|+..++.+|+|++..+++++.
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            99999987777666 66666555522  2356777777778899999999999999999999999999999877777877


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhh
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARK  287 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (609)
                      +.+.+.++++..++|..++-.+..++.+..||.+.|.++.+++++++++++...+.+++++|.+++...+.+++.++.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            88999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCC--CCCCCCCcccchhhHHHHHHHHhHHHHHHH
Q 039271          288 WNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDL--AGPKNPWKLCTVTQVEEAKCVLKMLPIWLC  365 (609)
Q Consensus       288 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (609)
                      ++...+.+++..   +   .........++.++.+++|++++..+.+.  ..+.++|+.|+.+++++.|.+++.++++..
T Consensus       272 ~~~~~~~~~~~~---~---~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~  345 (571)
T KOG1237|consen  272 RKAVVSLDPEEL---Y---YDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLT  345 (571)
T ss_pred             HhccCCCcchhc---c---ccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHH
Confidence            877766664433   1   11112222333566778888877765433  245678999999999999999999999999


Q ss_pred             HHHHHHHHhcccceeeEecccccccccc-cccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHH
Q 039271          366 TIIYSVVFTQMASLFVEQGDVMNSHIGE-FRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGL  444 (609)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~  444 (609)
                      .+++++.+.|..+.++.|+..++++.+. +..+++.+..+..+...+..++.+++..|+.||+++++.+.+++.++.+|+
T Consensus       346 ~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~  425 (571)
T KOG1237|consen  346 TIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL  425 (571)
T ss_pred             HHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence            9999999999999999999999999887 999999999999999999999999999999999999887889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCC-CCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHH
Q 039271          445 IIGMLAMIAAGATEIQRLKYISP-GEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISF  523 (609)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~l  523 (609)
                      ++..++|...+.++..|.+.+.+ ..++++.+++|++++++++|++|++..++.+++.++++|++||+.+++++....++
T Consensus       426 ~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~  505 (571)
T KOG1237|consen  426 VLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAV  505 (571)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887654 22357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCCCC-CCCccchhhHHHHHHHHHHHHHHHHHhhhccccccccCC
Q 039271          524 GNYVSSLLVVMVMGITAKGDKPGWIP-DDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLD  588 (609)
Q Consensus       524 g~~ig~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~  588 (609)
                      |+.++.+++.++...+..  ..+|+. +++|.++++.+||++++...+....+..+.++++.++.+
T Consensus       506 G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  506 GNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            999999999988877654  458999 899999999999999999999999998888888776544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-38  Score=331.54  Aligned_cols=462  Identities=19%  Similarity=0.299  Sum_probs=354.7

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC----CchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 039271           52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQ----QENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCA  127 (609)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~  127 (609)
                      -+++|.++.++..+++|+++|||+...+..|++.+++    ++.+++.-+.+.|....++.+.++||++||++|+|+++.
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            3578999999999999999999999999999999888    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          128 VFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      .|.++.++|+++++.+.  .                  .....++++.+++++|.|...|+..++++|++|+++++    
T Consensus        97 lGail~~iGh~~L~~~~--~------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----  152 (498)
T COG3104          97 LGAILMAIGHLVLAISS--V------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----  152 (498)
T ss_pred             HHHHHHHHHHHHHhccc--c------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----
Confidence            99999999999988761  0                  23567899999999999999999999999999999877    


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecC--CCCCChh------HHHH
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVK--PCGNPLP------RVAQ  279 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~  279 (609)
                      |..+++++|++.|+|++++|++++++.+.+||+..|..+++.+.++++.++..+++.....  +...+..      ....
T Consensus       153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  232 (498)
T COG3104         153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGG  232 (498)
T ss_pred             cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHH
Confidence            7788999999999999999999999999999999999999999999999998887765433  2222211      1111


Q ss_pred             HHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHh-hhhcccccCCCCCCCCCcccchhhHHHHHHHHh
Q 039271          280 VFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLD-KAATITDNDLAGPKNPWKLCTVTQVEEAKCVLK  358 (609)
Q Consensus       280 ~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (609)
                      .+...+.-     +     ++.             ....+..+... ........-.....-.|   .+.. +++++++.
T Consensus       233 ~~~~~~~~-----~-----~~~-------------~l~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~er~r~~~  285 (498)
T COG3104         233 LVVMILAA-----L-----LTL-------------LLNQNTFSGVLLVISILIAIIYFAEAFRS---PKVF-DERRRLLA  285 (498)
T ss_pred             HHHHHHHH-----H-----HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccH-HHHHHHHH
Confidence            11110000     0     000             00000000000 00000000000000011   1223 67889999


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeEecccc-cccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChh
Q 039271          359 MLPIWLCTIIYSVVFTQMASLFVEQGDVM-NSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSEL  437 (609)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  437 (609)
                      .+++++..++||+.+.|.++.+..+.... +++..++..++++.+++|++.+++++|+..+++.++.++. ++   ++..
T Consensus       286 ~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~  361 (498)
T COG3104         286 AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTP  361 (498)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcc
Confidence            99999999999999999999887776654 3442457899999999999999999999999999877764 33   3577


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH
Q 039271          438 QRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC  517 (609)
Q Consensus       438 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~  517 (609)
                      .++.+|+++++++++.+.+.....   +.+   .+..+.+|+++.+++.++||.+..|...+++++.+|+.+++..+|+|
T Consensus       362 ~KFalGl~l~g~~fl~l~~~~~~~---~~~---~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~w  435 (498)
T COG3104         362 IKFALGLILAGLGFLILLLAGIWF---GGP---SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMW  435 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh---cCC---CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHH
Confidence            789999999999999988864321   111   34678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccccc
Q 039271          518 MASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKG  584 (609)
Q Consensus       518 ~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~  584 (609)
                      .+.+..|+.++..+.+.... +  .       +..+......+|+.++++.++..+..+...|+.++
T Consensus       436 fLt~a~~~~l~g~va~~~~~-~--~-------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r  492 (498)
T COG3104         436 FLTVAAGQTLGGQVAGLTAV-T--D-------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR  492 (498)
T ss_pred             HHHHHHHHHhhceecccccc-c--c-------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999888777663211 0  0       01122334457888888888888877777666544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.1e-35  Score=321.33  Aligned_cols=462  Identities=15%  Similarity=0.235  Sum_probs=329.3

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 039271           52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL  131 (609)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  131 (609)
                      ++|||.++.+++.+++++++||++..+++.|+++++|++..+++++.+.+....++..+++|+++||++||||+++.+.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      ++.+++++++++.                     .....++++|+++++|.|...|+..++++|+||+++++    |++.
T Consensus        90 ~~~~g~~~~~~~~---------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~  144 (489)
T PRK10207         90 VLAIGYFMTGMSL---------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGA  144 (489)
T ss_pred             HHHHHHHHHHHhc---------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcc
Confidence            9999999888761                     11234568899999999999999999999999987632    6778


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceec--CCCCCChhHHHHHHHH------
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYV--KPCGNPLPRVAQVFIA------  283 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------  283 (609)
                      +++++++.|+|+.+||.+++++.++.|||+.|++.++..+++++.+...++.+++.  +|.+++.+. .+....      
T Consensus       145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~  223 (489)
T PRK10207        145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVV  223 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHH
Confidence            99999999999999999999999999999999998777666666666655544332  222222211 111000      


Q ss_pred             -H-HhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHH
Q 039271          284 -A-ARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLP  361 (609)
Q Consensus       284 -~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (609)
                       . ......... ++....                 ..............+.           ...++ .++++.+....
T Consensus       224 ~~~~~~~~~~~~-~~~~~~-----------------~~~~~~i~~~~f~~~~-----------~~~~~-~~r~r~~~~~~  273 (489)
T PRK10207        224 MIFVCAWLMHNV-EVANLV-----------------LIVLSIVVTIIFFREA-----------FKLDK-TGRNKMFVAFV  273 (489)
T ss_pred             HHHHHHHHHhhh-hHHHHH-----------------HHHHHHHHHHHHHHHH-----------hcCCH-HHHHHHHHHHH
Confidence             0 000000000 000000                 0000000000000000           00011 23445555666


Q ss_pred             HHHHHHHHHHHHhcccceeeEecc-cccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHH
Q 039271          362 IWLCTIIYSVVFTQMASLFVEQGD-VMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRM  440 (609)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  440 (609)
                      ++....++|..+.|..+.+..+.. ..+....++..++..+.++|++.+++..++.+++.+++.+|    +...++..++
T Consensus       274 l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r----~~~~~~~~k~  349 (489)
T PRK10207        274 LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK----GKDLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC----CCCCCcHHHH
Confidence            677788899999998776655443 34545556777888889999999999999988875555444    3335688889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHH
Q 039271          441 GIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMAS  520 (609)
Q Consensus       441 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~  520 (609)
                      .+|+++.+++++.+......   ..+.   ....+.+|+++.+++.++||.+..|+.++++++.+|++++|.++|++++.
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~---~~~~---~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~  423 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMW---FADA---QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT  423 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---hcCC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            99999999898765432211   0111   11356788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccccc
Q 039271          521 ISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGI  585 (609)
Q Consensus       521 ~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~  585 (609)
                      +++|+.+|..+...... .....++ .    .....+.++|..+++.+++..++++++.|+.+|.
T Consensus       424 ~~ig~~lg~~l~~~~~~-~~~~~~~-~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        424 QAAAFLLGGYVATFTAV-PDNITDP-L----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHhcc-ccccccc-h----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888764421 1000000 0    0123456788888888888888887777766554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=1.5e-33  Score=307.73  Aligned_cols=452  Identities=15%  Similarity=0.238  Sum_probs=327.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--hCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRV--LQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQ  130 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  130 (609)
                      +++|.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++||++|||+++.++.
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~   86 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG   86 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH
Confidence            5778899999999999999999999999999987  99999999999999999999999999999999449999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccch
Q 039271          131 LIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTL  210 (609)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  210 (609)
                      ++..++.+++++.                      .+.+.+++++++.|+|.|...|+..++++|++|+++++   .|++
T Consensus        87 ~~~~~g~~~~~~~----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~  141 (475)
T TIGR00924        87 IVLMLGHFMLAMS----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDG  141 (475)
T ss_pred             HHHHHHHHHHHhc----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccc
Confidence            9999988877765                      44667888999999999999999999999999876421   1778


Q ss_pred             hHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhH-----HHHH-----
Q 039271          211 FFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPR-----VAQV-----  280 (609)
Q Consensus       211 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----  280 (609)
                      ++++++++.|+|+++||.+++++.+.+||++.|++.++..+++.+.++..++.+++.++.+++.+.     ..+.     
T Consensus       142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (475)
T TIGR00924       142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLA  221 (475)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHH
Confidence            899999999999999999999999989999999998877777766666555554333222211110     0000     


Q ss_pred             -HHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhH-HhhhhcccccCCCCCCCCCcccchhhHHHHHHHHh
Q 039271          281 -FIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEF-LDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLK  358 (609)
Q Consensus       281 -~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (609)
                       ........ .....+.                    ..+.... .............  ..+.    .++ .+.++...
T Consensus       222 ~~~~~~~~~-~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~-~~~~~~~~  273 (475)
T TIGR00924       222 ALALVFFCA-WLMHHVV--------------------IANILLMTVTLAVIIFFFRLA--FKPR----LDA-VARNKMYA  273 (475)
T ss_pred             HHHHHHHHH-HHHhccH--------------------HHHHHHHHHHHHHHHHHHHHH--Hhcc----CCH-HHHhHHHH
Confidence             00000000 0000000                    0000000 0000000000000  0000    011 22334445


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeE-ecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChh
Q 039271          359 MLPIWLCTIIYSVVFTQMASLFVE-QGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSEL  437 (609)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  437 (609)
                      .+.+++...++|..+.|..+.+.. +...++.+..++..+.+.+.++|.+.+++++++.+++..++.||.    .+.+..
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----~~~~~~  349 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----KDPTTP  349 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----CCCCcH
Confidence            677888889999999998886543 334456666677888999999999999999999887655555441    123466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH
Q 039271          438 QRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC  517 (609)
Q Consensus       438 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~  517 (609)
                      .++.+|+++.+++++.++....    ..++   ....+.+|+++++++.++||.+..|..++++++.+|+++||+++|++
T Consensus       350 ~k~~~G~~l~~~~~~~~~~~~~----~~~~---~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~  422 (475)
T TIGR00924       350 LKFTLGMLFCGASFLTFAASIW----FADA---GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMW  422 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hcCC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence            6889999999999988876522    1221   23568999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccccc
Q 039271          518 MASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKG  584 (609)
Q Consensus       518 ~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~  584 (609)
                      .....+|+.+++.+.......                .++.++|...++++++..++++++.|+.+|
T Consensus       423 ~l~~~~g~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       423 FLAQAMGSLLGGYLATFGAVP----------------QGVTGVFGKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998887754321                123456777777777777777766665443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=5e-33  Score=299.96  Aligned_cols=426  Identities=15%  Similarity=0.217  Sum_probs=306.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      +|+|.++.++..++++++++|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||++.++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999955999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+++...  .                   .+...++++..+..+|.|...++..++++|+||+++++    |.+++
T Consensus        86 ~~lg~lll~~~--~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf  140 (493)
T PRK15462         86 MAIGHVVLGAS--E-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGF  140 (493)
T ss_pred             HHHHHHHHHHh--h-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----cccee
Confidence            88888766543  0                   11223445555666788888888899999999987433    88899


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceec---CCCCCChhHHHHHHHHHHhhcc
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYV---KPCGNPLPRVAQVFIAAARKWN  289 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      +++|...|+|+.++|.+++++.+.+||++.|.++++.++++++.++..++.+.+.   +|++.+.++..........---
T Consensus       141 ~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (493)
T PRK15462        141 SLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLL  220 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887777777766655554332   1111111110000000000000


Q ss_pred             cccCCCchhhhhhcCCcccccCccccccCchhhHH-hhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHH
Q 039271          290 VVVPANSDELYEVAGPESAIKGSRKILHSNEIEFL-DKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTII  368 (609)
Q Consensus       290 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (609)
                      ...+   ......            ..+. ..... -........ .   .. +....+...+|++++...+.++....+
T Consensus       221 ~~~~---~~~~~~------------~~~~-~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~er~r~~~~~~l~~~~~~  279 (493)
T PRK15462        221 VATP---ALITVL------------FWKE-WSVYALIVATIIGLG-V---LA-KIYRKAENQKQRKELGLIVTLTFFSML  279 (493)
T ss_pred             HHHH---HHHHHH------------HHHH-HHHHHHHHHHHHHHH-H---HH-HHHHhcCCHHHHhhHHHHHHHHHHHHH
Confidence            0000   000000            0000 00000 000000000 0   00 000000122567788888899999999


Q ss_pred             HHHHHhcccceeeEec-ccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHH
Q 039271          369 YSVVFTQMASLFVEQG-DVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIG  447 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~  447 (609)
                      ||..|+|.++.+.... .++|+++.++..++.+..++|++.+++++|+..+++.++.+|  +|  ..+...++.+|+++.
T Consensus       280 Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~--~~--~~s~~~Kfa~g~~~~  355 (493)
T PRK15462        280 FWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG--NR--TVRIWGKFALGLGLM  355 (493)
T ss_pred             HHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC--CC--CCCcHHHHHHHHHHH
Confidence            9999999998765433 456777778899999999999999999999999886655433  11  245777899999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHH-HHHHHH
Q 039271          448 MLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMAS-ISFGNY  526 (609)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~lg~~  526 (609)
                      +++++.+......    .++.   ...+.+|++..++++++||....|...+++.+.+|++.+|+.+|++... ..+|+.
T Consensus       356 g~~f~~l~~~~~~----~~~~---~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~  428 (493)
T PRK15462        356 SAGFCILTLSARW----SAMY---GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANY  428 (493)
T ss_pred             HHHHHHHHHHHhh----cCCC---CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888764421    1111   2468899999999999999999999999999999999999999999875 468888


Q ss_pred             HHHHHHHHh
Q 039271          527 VSSLLVVMV  535 (609)
Q Consensus       527 ig~~~~~~i  535 (609)
                      ++..+....
T Consensus       429 ~~g~~~~~~  437 (493)
T PRK15462        429 LAGVIADQT  437 (493)
T ss_pred             HHHHHHHHh
Confidence            877776644

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.1e-32  Score=302.66  Aligned_cols=457  Identities=16%  Similarity=0.241  Sum_probs=323.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      +++|.++.+++.++++++++|++.++++.|+++++|++..+++++.+.+........+++|+++||++|||+++..+.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999998888888888889999999933999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      +.++..+++++                     ..+.+.++++++++++|.|...++..++++|++|+++++    |..++
T Consensus        98 ~~ig~~l~~~~---------------------~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~  152 (500)
T PRK09584         98 LAIGYALVAWS---------------------GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAF  152 (500)
T ss_pred             HHHHHHHHHHh---------------------cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcc
Confidence            99888777765                     123456778889999999999999999999999876532    55678


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceec--CCCCCChhH--HHH----HH-HH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYV--KPCGNPLPR--VAQ----VF-IA  283 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~----~~-~~  283 (609)
                      ++++++.|+|+.+||.+++++.+.+||++.|++.++..+++++.++..++.++++  +|..++.+.  ...    .. ..
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALI  232 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHH
Confidence            8999999999999999999999999999999998877776665554444333332  222222211  100    00 00


Q ss_pred             HHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHH
Q 039271          284 AARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIW  363 (609)
Q Consensus       284 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (609)
                      .........++........               ...........              ..+..++ .+.++.+..+.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~  282 (500)
T PRK09584        233 AIATWLLHNQEIARMALGV---------------VALGIVVIFGK--------------EAFAMKG-AARRKMIVAFILM  282 (500)
T ss_pred             HHHHHHHhcchHHHHHHHH---------------HHHHHHHHHHH--------------HHhhcCH-HHHHHHHHHHHHH
Confidence            0010000000000000000               00000000000              0000111 3455555666777


Q ss_pred             HHHHHHHHHHhcccceeeEeccc-ccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHH
Q 039271          364 LCTIIYSVVFTQMASLFVEQGDV-MNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGI  442 (609)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  442 (609)
                      +..+++|..+.|.++.+..+... .+....++..+.+.+.++|++.+++++++.++...++.+|.       ++..++.+
T Consensus       283 ~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-------~~~~~~~~  355 (500)
T PRK09584        283 LEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-------PMPHKFAI  355 (500)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-------CcHHHHHH
Confidence            88899999999999987765433 44455567788899999999999999999988765555442       36678999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHH
Q 039271          443 GLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASIS  522 (609)
Q Consensus       443 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~  522 (609)
                      |+++++++++.+......    .++   ....+.+|+++.+++.++||++..|...+++.+.+|+++||+++|++.....
T Consensus       356 G~~l~~l~f~~l~~~~~~----~~~---~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a  428 (500)
T PRK09584        356 GMVLCSGAFLVLPLGAKF----AND---AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA  428 (500)
T ss_pred             HHHHHHHHHHHHHHHHHh----cCC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            999999999988775432    111   2246778999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCCCCCC-CccchhhHHHHHHHHHHHHHHHHHhhhccccccc
Q 039271          523 FGNYVSSLLVVMVMGITAKGDKPGWIPDD-LNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGI  585 (609)
Q Consensus       523 lg~~ig~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~  585 (609)
                      +|+.++..+......       +.-..+- ...+.+.++|..+++++++.++++++..++.+|.
T Consensus       429 ~g~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        429 GAALIAGYVANLMAV-------PDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHhcc-------ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888777653321       0000000 1122356788888888777777777777766554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.95  E-value=2.6e-25  Score=247.98  Aligned_cols=336  Identities=25%  Similarity=0.462  Sum_probs=269.1

Q ss_pred             HHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039271           70 LAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIK  149 (609)
Q Consensus        70 ~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (609)
                      ++||++...+..|+++.+|.+.+++..+...+.....+.++++|+++|+++||++++.++.++..+|.+++++...|...
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999888876433211


Q ss_pred             CCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhh
Q 039271          150 PTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI  229 (609)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  229 (609)
                                    ........+++..+..+|.|++.|+..++.+|+++++++   +.|.+++.++|+++|+|+++++++
T Consensus        81 --------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i  143 (654)
T TIGR00926        81 --------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTII  143 (654)
T ss_pred             --------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          012344577888899999999999999999999986432   227789999999999999999999


Q ss_pred             hhhcccc-------cchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhh
Q 039271          230 LVYYEDS-------GKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEV  302 (609)
Q Consensus       230 ~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~  302 (609)
                      .+++.+.       .+|..+|.+++++++++++++...++++++++|.+++..+..+++..+++++....++.       
T Consensus       144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-------  216 (654)
T TIGR00926       144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-------  216 (654)
T ss_pred             HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-------
Confidence            9988743       36999999999999999999888888887777777666666666655554432110000       


Q ss_pred             cCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeE
Q 039271          303 AGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVE  382 (609)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (609)
                                      ....+++.+...           +   ..+++++.+++++.+.+++...++|..+.|..+.+..
T Consensus       217 ----------------~~~~~ld~a~~~-----------~---~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~  266 (654)
T TIGR00926       217 ----------------WPLHWLDYAKDK-----------H---DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTL  266 (654)
T ss_pred             ----------------cchhHHHHhccc-----------c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence                            002233332111           1   1235678899999999999999999999999999888


Q ss_pred             ecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039271          383 QGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRL  462 (609)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  462 (609)
                      |...++.+++++..+...+..++.+.++++.++.++.+.+..+|.+.+   .++..++++|++++++++++....+..+.
T Consensus       267 qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~  343 (654)
T TIGR00926       267 QATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVN  343 (654)
T ss_pred             HHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888887777777888999999999999999999998888777765432   46899999999999999998888776555

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=1.8e-25  Score=252.08  Aligned_cols=155  Identities=14%  Similarity=0.125  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 039271           76 GVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGD  155 (609)
Q Consensus        76 ~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (609)
                      ...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.++++++            
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa------------  252 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFV------------  252 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH------------
Confidence            34455567788999999999999999999999999999999995 99999999999988888887776            


Q ss_pred             CCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc
Q 039271          156 GFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  235 (609)
                                .+++.++++|++.|++.++..+...++++|.+|++.      |+..++++..+..+|.++++.++..+..
T Consensus       253 ----------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       253 ----------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      568889999999999999999999999999999888      9999999999999999999887655442


Q ss_pred             c-------------cchhHHHHHHHHHHHHHHHHHHh
Q 039271          236 S-------------GKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       236 ~-------------~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .             .+||+.|++.++..++.++..++
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            2             36899888877766665554444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=5.8e-24  Score=226.95  Aligned_cols=373  Identities=12%  Similarity=0.044  Sum_probs=242.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      |..++.+.+..+......+...+.+| .+.+++|.+..+.+++.+.+.++..++.++.|.++||+ ||||++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            44455555555555444443333444 56778999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+.+.++                      ++.+.++++|+++|++.+...+...+++.|++|+++      |++.+++
T Consensus        86 ~~~~~~~~~----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~  137 (390)
T PRK03545         86 ASHVLSALA----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSL  137 (390)
T ss_pred             HHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHH
Confidence            998888877                      678899999999999999888999999999999888      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA  294 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  294 (609)
                      +..+.++|..++|.+++.+.+..|||+.|++.++..++..+......|+.++++  +++.++                  
T Consensus       138 ~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~------------------  197 (390)
T PRK03545        138 LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH--SGSLKS------------------  197 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cchHHH------------------
Confidence            999999999999999999988899999999988766655444333222211100  000000                  


Q ss_pred             CchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHH-hHHHHHHHHHHHHHHH
Q 039271          295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVL-KMLPIWLCTIIYSVVF  373 (609)
Q Consensus       295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  373 (609)
                                                  ..+                        +...+.+. .....++.....+..+
T Consensus       198 ----------------------------~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  225 (390)
T PRK03545        198 ----------------------------LPL------------------------LFRRPALVSLYLLTVVVVTAHFTAY  225 (390)
T ss_pred             ----------------------------HHH------------------------HHhCcHHHHHHHHHHHHHHHHHHHH
Confidence                                        000                        00000111 1111111111112222


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      .....++.. ..+.+      ....+.+.....+..++...+.+++    .+|..++        .+..+..+..+++..
T Consensus       226 ~~~~~~l~~-~~g~s------~~~~~~~~~~~~~~~~~g~~~~g~l----~dr~~~~--------~~~~~~~~~~~~~~~  286 (390)
T PRK03545        226 SYIEPFVQQ-VAGLS------ENFATLLLLLFGGAGIIGSVLFSRL----GNRHPSG--------FLLIAIALLLVCLLL  286 (390)
T ss_pred             HHHHHHHHH-hcCCC------ccHHHHHHHHHHHHHHHHHHHHHHH----hhccchh--------HHHHHHHHHHHHHHH
Confidence            222222111 01111      1112333344444555555555554    3443221        244455544444443


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVV  533 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~  533 (609)
                      ....               ..+.+.++...++.|++.....+.....+.+..| +.|++++|+++....+|..+|+.+.+
T Consensus       287 l~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G  350 (390)
T PRK03545        287 LLPA---------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN  350 (390)
T ss_pred             HHHH---------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221               1234455566677888887777777788888877 57899999999999999999999999


Q ss_pred             HhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 039271          534 MVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICAN  580 (609)
Q Consensus       534 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~  580 (609)
                      .+.+..                ++...|++.+++.++++++.+...+
T Consensus       351 ~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        351 QVSLHL----------------GLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            876422                2334677778887777777665553

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=2.1e-24  Score=236.52  Aligned_cols=435  Identities=13%  Similarity=0.071  Sum_probs=241.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--------CCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVL--------QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCA  127 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~  127 (609)
                      +.++...+..+...+....+.+..+ .+++.+        +.+..+.+++.+++.++..++++++|+++||+ ||||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~   89 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHhHH-HHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHH
Confidence            3444444444444444333333333 244444        88899999999999999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          128 VFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      .+.+++.++.+..++..+....          ....+......++++|+++|++.|...+...++++|++|+++      
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------  153 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTS----------IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------  153 (479)
T ss_pred             HHHHHHHHHHHHHHhhcccccc----------ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------
Confidence            9999988887766653211000          000011335678899999999999999999999999999988      


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHH
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILVYYE--------DSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQ  279 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (609)
                      |++.+++...+..+|.++++++++.+.        +..|||+.|++.++..++..+..++. |+.++.....++.++..+
T Consensus       154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~  232 (479)
T PRK10077        154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFV-PETPRYLMSRGKQEQAEG  232 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHcCCHHHHHH
Confidence            999999999999999999887765442        45789999998877666655444333 221110000011110000


Q ss_pred             HHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhH
Q 039271          280 VFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM  359 (609)
Q Consensus       280 ~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (609)
                          ..++..  .+                        .+.....+........               +....+..+..
T Consensus       233 ----~~~~~~--~~------------------------~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~  267 (479)
T PRK10077        233 ----ILRKIM--GN------------------------TLATQALQEIKHSLDH---------------GRKTGGKLLMF  267 (479)
T ss_pred             ----HHHHHc--CC------------------------hhHHHHHHHHHHHHHH---------------hhhhhhhhcch
Confidence                000000  00                        0000000000000000               00000000000


Q ss_pred             HHHHHHHHHHHHHHhccc---------ceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCC
Q 039271          360 LPIWLCTIIYSVVFTQMA---------SLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGN  430 (609)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  430 (609)
                      ........+....+.+..         +.+.. ..+.+      ............+..++...+..++.    +|+++|
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~~g~~------~~~~~~~~~~~~~~~~i~~~~~g~l~----dr~g~r  336 (479)
T PRK10077        268 GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-TLGAS------TDIALLQTIIVGVINLTFTVLAIMTV----DKFGRK  336 (479)
T ss_pred             hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-HcCCC------CchHHHHHHHHHHHHHHHHHHHHHHH----HHhcCh
Confidence            000000000000011110         00000 00111      01112222233344444445555543    343322


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhh-hhhhHHHhhhcCCcch
Q 039271          431 PKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFM-YVGQLEFFNGQAPDGI  509 (609)
Q Consensus       431 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~-~~~~~~~~~~~~p~~~  509 (609)
                             ..+..+.++++++++.+.....            ......+.+...++.+.+.... .|..+.++.|.+|++.
T Consensus       337 -------~~~i~~~~~~~v~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  397 (479)
T PRK10077        337 -------PLQIIGALGMAIGMFSLGTAFY------------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  397 (479)
T ss_pred             -------HHHHHhHHHHHHHHHHHHHHHh------------cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence                   3467777777777776654321            1112223333344444444432 3666788999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccccccCCc
Q 039271          510 KSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDE  589 (609)
Q Consensus       510 r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~  589 (609)
                      |++++|+.+..+.+++.+++.+.+.+.+       ++|+.++.   +....|+++++++++++++.+++.+++|++++||
T Consensus       398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  467 (479)
T PRK10077        398 RGKALAIAVAAQWIANYFVSWTFPMMDK-------NSWLVAHF---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE  467 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHh-------ccchhhhc---cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHH
Confidence            9999999999999999999887765431       12322211   1223567777777777777777788888877765


Q ss_pred             hhhHH
Q 039271          590 DSCEK  594 (609)
Q Consensus       590 ~~~~~  594 (609)
                      .++..
T Consensus       468 ~~~~~  472 (479)
T PRK10077        468 MEALW  472 (479)
T ss_pred             HHHHH
Confidence            54443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=2.3e-23  Score=222.88  Aligned_cols=376  Identities=11%  Similarity=0.021  Sum_probs=245.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      +|.+..+++..+...++.....+.++.|+.+++|.+..+.+++.+.+.+...+++++.|+++||+ ||||++..+.++..
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence            45777788888888888888889999999999999999999999999999999999999999996 99999999998887


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+.+.+......              ....+.+.+++.|+++|++.+...+...+++.|.+|+++      |++..++
T Consensus        93 ~~~~~~~~~~~~~~--------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~  152 (399)
T PRK05122         93 LSGLLYLLAGLLAA--------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISW  152 (399)
T ss_pred             HHHHHHHHhhhhhc--------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhh
Confidence            77665554421100              001346788999999999999999999999999999888      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA  294 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  294 (609)
                      +....++|..+|+.+++++.+..||++.+++.++..++..+..   ++. ++.++.+++..                   
T Consensus       153 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-------------------  209 (399)
T PRK05122        153 NGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RPR-PAVPPVKGERL-------------------  209 (399)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hcC-CCCCCCCccch-------------------
Confidence            9999999999999999999988999998877665544333222   111 11010000000                   


Q ss_pred             CchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhH-HHHHHHHHHHHHHH
Q 039271          295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM-LPIWLCTIIYSVVF  373 (609)
Q Consensus       295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  373 (609)
                                                 ++.                          +..+..+.. ....+....+....
T Consensus       210 ---------------------------~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~  236 (399)
T PRK05122        210 ---------------------------PFR--------------------------RVLGRVWPYGMGLALASIGFGTIA  236 (399)
T ss_pred             ---------------------------hHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       000                          000000000 00111111111111


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      ...+.++..+  +.+        ..........+..++...+.+++    .+|+++       ...+..+.++.+++++.
T Consensus       237 ~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~g~l----~~r~~~-------~~~~~~~~~~~~~~~~~  295 (399)
T PRK05122        237 TFITLYYAAR--GWD--------GAALALTLFGVAFVGARLLFGNL----INRLGG-------LRVAIVSLLVEILGLLL  295 (399)
T ss_pred             HHHHHHHHHc--ccc--------cchHHHHHHHHHHHHHHHHHHHH----HHHhcc-------HHHHHHHHHHHHHHHHH
Confidence            1111111110  100        11112223333334444444444    344322       22355666666666655


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVV  533 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~  533 (609)
                      +...                .+.++.+...++.|++.....+.....+.+..|++.|++++|+++....+|..+++.+.+
T Consensus       296 ~~~~----------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  359 (399)
T PRK05122        296 LWLA----------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG  359 (399)
T ss_pred             HHHh----------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5442                134445566778888888888887788889999999999999999999999999888888


Q ss_pred             HhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcc
Q 039271          534 MVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICAN  580 (609)
Q Consensus       534 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~  580 (609)
                      .+.+..                ++...|++.+++.+++.++.+++.+
T Consensus       360 ~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        360 LVASWF----------------GYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            775421                2445677777777776665554433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.5e-23  Score=214.10  Aligned_cols=379  Identities=16%  Similarity=0.100  Sum_probs=268.3

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 039271           52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL  131 (609)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  131 (609)
                      +..|..++.+.++.|..+..-+...+.+|. +.+++|+|..++|+.++.|..+..++.|+...+.||+ .||++++....
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            345778888888999999888888888876 5678999999999999999999999999999999995 99999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +++++.++.+++                      +|++.++++|++.|+..|.+.+...++.+++.|+++      |+++
T Consensus        87 lFi~~n~l~alA----------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~A  138 (394)
T COG2814          87 LFIVSNLLSALA----------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRA  138 (394)
T ss_pred             HHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhH
Confidence            999999999999                      789999999999999999999999999999999999      9999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCC-cceecCCCCCChhHHHHHHHHHHhhccc
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTP-GYRYVKPCGNPLPRVAQVFIAAARKWNV  290 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      .++...+..++..+|..++.++.+.+|||+.|+..+++.+++++..+...| +.+.+++.. +..+..            
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~-~~~~~~------------  205 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPG-PLRTLL------------  205 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCc-chhHHH------------
Confidence            999999999999999999999999999999999999888888777666555 111111000 000000            


Q ss_pred             ccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHH
Q 039271          291 VVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYS  370 (609)
Q Consensus       291 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (609)
                                                        +.                       .++-+....++..++.....+
T Consensus       206 ----------------------------------~~-----------------------l~~p~v~~~l~~t~l~~~g~F  228 (394)
T COG2814         206 ----------------------------------RL-----------------------LRRPGVLLGLLATFLFMTGHF  228 (394)
T ss_pred             ----------------------------------HH-----------------------hcCchHHHHHHHHHHHHcchh
Confidence                                              00                       000011122233333344444


Q ss_pred             HHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHH
Q 039271          371 VVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLA  450 (609)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~  450 (609)
                      ..|.+..+++.... +++      .....++.....+..++...+.+++    .+| .       ++..+.....+.++.
T Consensus       229 ~~ftYi~P~L~~v~-g~s------~~~vs~~Ll~~Gv~~~~Gn~~gGrl----~dr-~-------~~~~l~~~~~l~a~~  289 (394)
T COG2814         229 ALYTYIRPFLESVA-GFS------VSAVSLVLLAFGIAGFIGNLLGGRL----ADR-G-------PRRALIAALLLLALA  289 (394)
T ss_pred             hhHHhHHHHHHHcc-CCC------HhHHHHHHHHHHHHHHHHHHHHhhh----ccc-c-------chhHHHHHHHHHHHH
Confidence            55554444443321 111      1122334444555555555555554    344 1       223455555666666


Q ss_pred             HHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 039271          451 MIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSL  530 (609)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~  530 (609)
                      ++.+.+.               +.+.+..+...++.+++........+....+..| +.++.+++++....++|..+|.+
T Consensus       290 ~l~l~~~---------------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~  353 (394)
T COG2814         290 LLALTFT---------------GASPALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAA  353 (394)
T ss_pred             HHHHHHh---------------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHH
Confidence            6666553               2233444445555666666655666566656444 56999999999999999999999


Q ss_pred             HHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 039271          531 LVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANW  581 (609)
Q Consensus       531 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  581 (609)
                      +.+.+.+.                .++....++.++..++++++.+...+.
T Consensus       354 lGG~v~~~----------------~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         354 LGGLVLDA----------------LGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHh----------------hchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99988752                233445677777777776666555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.93  E-value=8.5e-24  Score=233.27  Aligned_cols=180  Identities=14%  Similarity=0.124  Sum_probs=134.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRV-----LQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVF  129 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~  129 (609)
                      ++.+..+.+..+...+....+....+. +.++     .+.+..+.+++.+...++..++.+++|+++||+ |||+++.++
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~   92 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHH
Confidence            344444555555555554444444443 3332     234556778999999999999999999999996 999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccc
Q 039271          130 QLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKT  209 (609)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  209 (609)
                      .++..++.++.+++  ++..              +..+.+.++++|++.|++.|...+....+++|.+|+++      |+
T Consensus        93 ~~~~~v~~~~~~~~--~~~~--------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg  150 (502)
T TIGR00887        93 LIIMIIATVASGLS--PGSS--------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RG  150 (502)
T ss_pred             HHHHHHHHHHHHHc--cCcc--------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HH
Confidence            99988888777665  1100              00236789999999999999999999999999999999      99


Q ss_pred             hhHHHHHHHHhhhHHHHhhhhhhccc-----------------------ccchhHHHHHHHHHHHHHHHHHH
Q 039271          210 LFFCYFYFFLNVGSLFSNTILVYYED-----------------------SGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       210 ~~~~~~~~~~~ig~~~~~~i~~~l~~-----------------------~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      +..++.+...++|..+++.++.++..                       .++||+.|.+.++..++.++..+
T Consensus       151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~  222 (502)
T TIGR00887       151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRL  222 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887765421                       24799999887766655544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=1.3e-23  Score=226.25  Aligned_cols=393  Identities=13%  Similarity=0.042  Sum_probs=247.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      ..++...++..++.......+|.+. ++++.+..+.|++.+...+...++.++.|+++||+ |||+++..+.++..++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~   97 (417)
T PRK10489         20 RAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFI   97 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHH
Confidence            3444455566666555556666665 45778999999999999999999999999999996 999999988877777666


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ++.......                 ..+++.+++.|++.|++.+...++..+++.|.+|+++      |++..++.+..
T Consensus        98 ~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  154 (417)
T PRK10489         98 GLALNAFLP-----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLT  154 (417)
T ss_pred             HHHHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHH
Confidence            554321110                 1456778889999999988888888999999999877      88999999999


Q ss_pred             HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchh
Q 039271          219 LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDE  298 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  298 (609)
                      .++|..+||.+++.+.+..+|++.|++.++..+++.+..+..++..+.+++..++..                       
T Consensus       155 ~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------------  211 (417)
T PRK10489        155 VRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLR-----------------------  211 (417)
T ss_pred             HhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchH-----------------------
Confidence            999999999999999888899999988877666655544332211000000000000                       


Q ss_pred             hhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccc
Q 039271          299 LYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMAS  378 (609)
Q Consensus       299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                                             +..+.               ++     .+...+.+.......+............+.
T Consensus       212 -----------------------~~~~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  248 (417)
T PRK10489        212 -----------------------SLLAG---------------FR-----FLLASPVVGGIALLGGLLTMASAVRVLYPA  248 (417)
T ss_pred             -----------------------HHHHH---------------HH-----HHHcChHHHHHHHHHHHHHHHHhHHHhhHH
Confidence                                   00000               00     000001111111111111111111111111


Q ss_pred             eeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 039271          379 LFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATE  458 (609)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  458 (609)
                      +. .+..+.+      ....+.+.....++.++...+.+++    .+|..       +...+..+.++..++++.+... 
T Consensus       249 ~~-~~~~g~~------~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~~-------~~~~l~~~~~~~~~~~~~~~~~-  309 (417)
T PRK10489        249 LA-DEVWQMG------AAQIGLLYAAVPLGAALGALTSGWL----AHSAR-------PGLLMLLSTLGSFLAVGLFGLM-  309 (417)
T ss_pred             HH-HhccCCC------hhHhHHHHHHHHHHHHHHHHHHHHh----hhccC-------cchHHHHHHHHHHHHHHHHHcc-
Confidence            11 1111111      1123334444445555555555443    23311       1223556666666666555432 


Q ss_pred             HhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039271          459 IQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGI  538 (609)
Q Consensus       459 ~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~  538 (609)
                                     .+.+......++.+++.+...+...+++.+..|++.||+++|++++...+|+.+|+.+.+.+.+.
T Consensus       310 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~  374 (417)
T PRK10489        310 ---------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM  374 (417)
T ss_pred             ---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence                           23444555667778887777777778889999999999999999999999999999999988753


Q ss_pred             cccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccccccCCchhh
Q 039271          539 TAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSC  592 (609)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~~~  592 (609)
                      .                ++...+++.+++.++..++.+...+++|++++||.+.
T Consensus       375 ~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        375 M----------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             h----------------chhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            2                1223466667666666666667778888877776553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=5.7e-23  Score=220.28  Aligned_cols=357  Identities=13%  Similarity=0.079  Sum_probs=229.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      +|..+...+...+++.+..+......| .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   90 (406)
T PRK11551         13 LALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALF   90 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            455566666677777777766655555 45678999999999999999999999999999999996 9999999999888


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+++.+.                      .+++.+++.|++.|++.+...+...+++.|.+|+++      |++.++
T Consensus        91 ~~~~~~~~~~----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~  142 (406)
T PRK11551         91 GLFSLATAQA----------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVS  142 (406)
T ss_pred             HHHHHHHHHh----------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            8777766665                      567888999999999999999999999999999888      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccC
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVP  293 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  293 (609)
                      +++...++|+.+++.+++.+.+..+|++.|++.+++.++..++.....++.++.+++.....                  
T Consensus       143 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------  204 (406)
T PRK11551        143 LMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK------------------  204 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch------------------
Confidence            99999999999999999888888999999998776555444433332222111000000000                  


Q ss_pred             CCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 039271          294 ANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVF  373 (609)
Q Consensus       294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (609)
                       +                        +....+..              ++     +....+........+......+...
T Consensus       205 -~------------------------~~~~~~~~--------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  240 (406)
T PRK11551        205 -Q------------------------RAPVLRAL--------------FG-----EGRATATLLLWISYFFTLIVLYFLL  240 (406)
T ss_pred             -h------------------------hhhhHHHH--------------hh-----hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence             0                        00000000              00     0000011111111111112222222


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      .+.+.++..  .+.+      ....+.......+..++...+.+++.+++++|           ..+..+.+...++++.
T Consensus       241 ~~~p~~~~~--~g~s------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        241 NWLPSLLVG--QGLS------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-----------RVVLLIYAGILASLAA  301 (406)
T ss_pred             HHHHHHHHh--CCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHH
Confidence            222222211  1111      11223344444455555555655554433332           2233344444444444


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVV  533 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~  533 (609)
                      +...                .+.+.+....++.+++.....+...++..+.+|++.|+++.|+.++...+|+.+|+.+.+
T Consensus       302 ~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g  365 (406)
T PRK11551        302 LAAA----------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG  365 (406)
T ss_pred             HHhc----------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh
Confidence            4332                133344445566777666677788889999999999999999999999999999999998


Q ss_pred             Hhhh
Q 039271          534 MVMG  537 (609)
Q Consensus       534 ~i~~  537 (609)
                      .+.+
T Consensus       366 ~l~~  369 (406)
T PRK11551        366 QLLA  369 (406)
T ss_pred             hhhc
Confidence            7653

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=8.9e-23  Score=217.86  Aligned_cols=374  Identities=11%  Similarity=0.011  Sum_probs=241.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      .+.++.+.+..++..++.....+.+|.|+.+++|.|..+.+++.+.+.+...+++++.|+++||+ ||||+++.+.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence            45667777777777777777788899999999999999999999999999999999999999996 99999999988776


Q ss_pred             HHHHHHHHHh-hhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          135 VGLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       135 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      ++.+...... .+..               ...+++.++++|+++|++.+...+...+.+.|.+|+++      |+++++
T Consensus        93 ~~~~~~~~~~~~~~~---------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~  151 (392)
T PRK12382         93 LAGLAYLLAAILPVS---------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMS  151 (392)
T ss_pred             HHHHHHHhhhccccc---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhh
Confidence            6554333221 1110               01467889999999999999888888899999999888      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccC
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVP  293 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  293 (609)
                      +++.+.++|..++|.+++++.+.+||++.+++..+..++.+... .   +.++.+++++...                  
T Consensus       152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~------------------  209 (392)
T PRK12382        152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFN-G---TVRKVPAHAGERP------------------  209 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH-H---hccCCCCCcccCc------------------
Confidence            99999999999999999999888999987766544433222211 1   1111111000000                  


Q ss_pred             CCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 039271          294 ANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVF  373 (609)
Q Consensus       294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (609)
                                                  +..+.                       .+..+..  .....+....+....
T Consensus       210 ----------------------------~~~~~-----------------------~~~~~~~--~~~~~l~~~~~~~~~  236 (392)
T PRK12382        210 ----------------------------SLWSV-----------------------VGLIWKP--GLGLALQGVGFAVIG  236 (392)
T ss_pred             ----------------------------hHHHH-----------------------HHHHHHh--HHHHHHHHHHHhHHH
Confidence                                        00000                       0000000  000111111111111


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      ...+.++...  +.       . ..........+..++..++.+++.    +|+++++       .+..+..+.+++++.
T Consensus       237 ~~~~~~~~~~--~~-------~-~~~~~~~~~~~~~~~~~~~~g~l~----~r~g~~~-------~~~~~~~~~~~~~~~  295 (392)
T PRK12382        237 TFVSLYFASK--GW-------A-MAGFTLTAFGGAFVLMRVLFGWMP----DRFGGVK-------VAIVSLLVETVGLLL  295 (392)
T ss_pred             HHHHHHHHhc--CC-------c-hhHHHHHHHHHHHHHHHHHHHHHH----HhcCCCe-------ehHHHHHHHHHHHHH
Confidence            1111111110  00       0 011222233334444555555543    4433322       245566666666655


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVV  533 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~  533 (609)
                      +...                .+.+..+...++.+++.+...+.....+.+.+|++.|+++.|++++...+|+.+++.+.+
T Consensus       296 ~~~~----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g  359 (392)
T PRK12382        296 LWLA----------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG  359 (392)
T ss_pred             HHHc----------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5442                133445556677888888888888888889999999999999999999999999999999


Q ss_pred             HhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhh
Q 039271          534 MVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLIC  578 (609)
Q Consensus       534 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~  578 (609)
                      .+.+..                ++...|.+.+++.+++.++.++.
T Consensus       360 ~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        360 MLATSF----------------GYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence            876532                23446777777777776665543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=5e-23  Score=220.48  Aligned_cols=348  Identities=13%  Similarity=0.104  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      +.++...++.+.+++.+.++++.|+++++|.+..++|++.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            6677888899999999999999999999999999999999999999999999999999995 999999999999988888


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ++...                      ++.+.+++.|++.|++.+...|...+++.|.+|+++      |+++.++.+..
T Consensus        92 ~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~  143 (400)
T PRK11646         92 TMAIA----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQ  143 (400)
T ss_pred             HHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHH
Confidence            77765                      567888999999999999888999999999999887      99999999999


Q ss_pred             HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchh
Q 039271          219 LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDE  298 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  298 (609)
                      .++|..+||.+++++. .+||++.|++.++..++..++.....++.+. ++..++..                       
T Consensus       144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~-----------------------  198 (400)
T PRK11646        144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR-----------------------  198 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH-----------------------
Confidence            9999999999999998 6899999998876665554433332222100 00000000                       


Q ss_pred             hhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccc
Q 039271          299 LYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMAS  378 (609)
Q Consensus       299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                                            .++.+                       ..++ +.+......+.   .++..+.+...
T Consensus       199 ----------------------~~~~~-----------------------~~~~-~~~~~~~~~~~---~~~~~~~~~~~  229 (400)
T PRK11646        199 ----------------------EGMTR-----------------------VLRD-KRFVTYVLTLT---GYYMLAVQVML  229 (400)
T ss_pred             ----------------------HHHHH-----------------------HHcC-chHHHHHHHHH---HHHHHHHHHHH
Confidence                                  00000                       0000 11111111111   11111111111


Q ss_pred             eeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 039271          379 LFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATE  458 (609)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  458 (609)
                      .++..   .... ++.....+.+..+..+..........+..+   +|..       ....+..+.++.+++++.++..+
T Consensus       230 ~~p~~---~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~---~r~~-------~~~~~~~~~~~~~~~~~~l~~~~  295 (400)
T PRK11646        230 MLPIM---VNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSE---KRFR-------LEHRLMAGLLIMSLSMFPIGMVS  295 (400)
T ss_pred             hhhhh---HHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcc-------hhHHHHHHHHHHHHHHHHHHHhh
Confidence            11110   0000 000111222333333333322222233221   2211       22345667777777766665432


Q ss_pred             HhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039271          459 IQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGI  538 (609)
Q Consensus       459 ~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~  538 (609)
                                      +.++++...++.+++.+...|...+++.+.+|++.||+++|+.++...+|+.+|+.+.+++.+.
T Consensus       296 ----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        296 ----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence                            2334444556678888888889889999999999999999999999999999999999988765


Q ss_pred             c
Q 039271          539 T  539 (609)
Q Consensus       539 ~  539 (609)
                      +
T Consensus       360 ~  360 (400)
T PRK11646        360 G  360 (400)
T ss_pred             H
Confidence            3

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.93  E-value=1.2e-22  Score=223.53  Aligned_cols=168  Identities=17%  Similarity=0.167  Sum_probs=129.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhh-hhH-----HHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENAN-AAN-----NVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAV  128 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~  128 (609)
                      ++.+....+..+++.+.+.. ..+...++.++++.+... .++     +.++..++..++++++|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            34555566677777777665 445556788887644322 122     24667788999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHH--------HHHHHHHHHHHhhcCchhhhhhhhhccCCCC
Q 039271          129 FQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAA--------IFYLSIYLIAFGYGGHQPTLATFGADQFDES  200 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  200 (609)
                      +.+++.++.++++++                      +++.        .+++.|+++|++.|+..+...++++|++|++
T Consensus        93 ~~~l~~i~~~~~a~~----------------------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~  150 (490)
T PRK10642         93 TIVIMSISTFCIGLI----------------------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR  150 (490)
T ss_pred             HHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC
Confidence            999999999988887                      3332        4889999999999999999999999999998


Q ss_pred             ChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcc--------cccchhHHHHHHHHHHHH
Q 039271          201 KPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYE--------DSGKWTLGFLVSLASAVI  252 (609)
Q Consensus       201 ~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~  252 (609)
                      +      |++..++...+.++|..+|+.+...+.        ..+|||+.|++.++..++
T Consensus       151 ~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        151 K------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             C------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            8      999999888888888887776554332        257999999987654443

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=2.1e-23  Score=223.01  Aligned_cols=174  Identities=18%  Similarity=0.157  Sum_probs=152.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      .+|+.+.+++..++...+++.+.++++.|+++++|.+..++|++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            456788888889999999999999999999999999999999999999999999999999999995 9999999999888


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+++.+.                      ++.+.+++.+.+.+.+.+...+...+...|.+|+++      |++.++
T Consensus        84 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g  135 (395)
T PRK10054         84 ASGFIAIPLV----------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFS  135 (395)
T ss_pred             HHHHHHHHHH----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHH
Confidence            8887777666                      567777778888887777778888999999999877      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      +.+...++|..++|.+++++.+ .+|+.+|++.+++.+++++..
T Consensus       136 ~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        136 LNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999998875 789999998887766665443

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=1e-22  Score=222.80  Aligned_cols=401  Identities=12%  Similarity=0.055  Sum_probs=242.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      .|.++.+.+..++..+..+.+.+++|.|.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            345677778888888888888888887765 6999999999999999999999999999999996 99999999988888


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+++.+.                      .+.+.++++|+++|++.+...|...+++.|.+|+++      |++.+++
T Consensus        87 ~~~~~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  138 (471)
T PRK10504         87 LGSLFCALS----------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTF  138 (471)
T ss_pred             HHHHHHHHh----------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            877766665                      567888999999999999999999999999999877      8899999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA  294 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  294 (609)
                      ++...++|..+||.+++++.+..||++.|++......++.+......++.+..++. .+.............. .     
T Consensus       139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~-~-----  211 (471)
T PRK10504        139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRR-FDLSGFLLLAVGMATL-T-----  211 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CChHHHHHHHHHHHHH-H-----
Confidence            99999999999999999999999999999998776666555544433332221111 1111111000000000 0     


Q ss_pred             CchhhhhhcCCcccccCccccccCchhhHHhhh------hcccccCCCCCCCCCcccchhhHHHHHHHHhHHH-HHHHHH
Q 039271          295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKA------ATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLP-IWLCTI  367 (609)
Q Consensus       295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  367 (609)
                           +...+.+   .  ..+............      ....+.....+..+++      +...+.+...+. .++...
T Consensus       212 -----~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~l~~~~~~~~  275 (471)
T PRK10504        212 -----LALDGSK---G--LGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK------LFRTRTFSLGLAGSFAGRI  275 (471)
T ss_pred             -----HHHhcCC---c--CCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH------HhcccchHHHHHHHHHHHH
Confidence                 0000000   0  000000000000000      0000000000000111      111111111111 111111


Q ss_pred             HHHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHH
Q 039271          368 IYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIG  447 (609)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~  447 (609)
                      .+ .......+++.+...+.+      ....+.......+..++..++..++    .+|+++|       ..+..+..+.
T Consensus       276 ~~-~~~~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l----~~r~g~~-------~~~~~~~~~~  337 (471)
T PRK10504        276 GS-GMLPFMTPVFLQIGLGFS------PFHAGLMMIPMVLGSMGMKRIVVQV----VNRFGYR-------RVLVATTLGL  337 (471)
T ss_pred             HH-HHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCch-------HHHHHHHHHH
Confidence            11 111111122211111111      1122233333333334444455554    4554332       2355566666


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHH
Q 039271          448 MLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYV  527 (609)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~i  527 (609)
                      +++...+....             ...+.+++....++.|++.+..++..+.++.+..|++.++.++|++++...+|+.+
T Consensus       338 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i  404 (471)
T PRK10504        338 ALVSLLFMLVA-------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSI  404 (471)
T ss_pred             HHHHHHHHhcc-------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHH
Confidence            66555544421             11123333445667778888888888899999999999999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q 039271          528 SSLLVVMVMGIT  539 (609)
Q Consensus       528 g~~~~~~i~~~~  539 (609)
                      |+.+.+.+.+..
T Consensus       405 g~~i~g~ll~~~  416 (471)
T PRK10504        405 GVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=7.6e-23  Score=225.23  Aligned_cols=399  Identities=12%  Similarity=0.009  Sum_probs=246.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      |..+..+++..++..+....+.+.+|.. .+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||+++..+.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            4456666677777777777666666655 668999999999999999999999999999999995 99999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCC-CCChhhhhccchhHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFD-ESKPKERQSKTLFFC  213 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~  213 (609)
                      +++++++.+                      ++.+.++++|+++|+|.+...|.....+.+.++ +++      |+++++
T Consensus        83 ~~~~~~~~a----------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g  134 (495)
T PRK14995         83 LASLAAAFS----------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALG  134 (495)
T ss_pred             HHHHHHHHc----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHH
Confidence            999998887                      678999999999999999998888888878774 455      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHH------HHHHHhh
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQV------FIAAARK  287 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  287 (609)
                      ++....++|..+||.+++++.+..||||.|++...+.++.+++.....|+.++++.++.+.......      +...+..
T Consensus       135 ~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~  214 (495)
T PRK14995        135 VWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKT  214 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987666655554444333322211111111111000      0001110


Q ss_pred             cccccCCCchhhhhhcCCcccccCccccccCchhhHHhh-hhcccccCCCCCCCCCcccchhhHHHHHHHHhH-HHHHHH
Q 039271          288 WNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDK-AATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM-LPIWLC  365 (609)
Q Consensus       288 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  365 (609)
                      . .....++ +               ............. .-...+.+...+..|++.++      .+..... +..+..
T Consensus       215 ~-~~~~~~~-~---------------~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~------~~~~~~~~~~~~~~  271 (495)
T PRK14995        215 A-LKGFLSL-W---------------VTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFT------HRIILSGVVMAMTA  271 (495)
T ss_pred             c-cccCCch-H---------------HHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhC------CcccHHHHHHHHHH
Confidence            0 0000000 0               0000000000000 00000000000011111111      1111111 111111


Q ss_pred             HHHHHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHH
Q 039271          366 TIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLI  445 (609)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~  445 (609)
                      ...++......+.++ +...+.+      ....+.......+...+..++.+++.    +|+++|       ..+..|++
T Consensus       272 ~~~~~~~~~~~~~~l-q~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~----~r~g~~-------~~~~~g~~  333 (495)
T PRK14995        272 MITLVGFELLMAQEL-QFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILV----SRLGLR-------LVATGGMA  333 (495)
T ss_pred             HHHHHHHHHHHHHHH-HHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCch-------HHHHHHHH
Confidence            111111111111111 1111111      22234444455556666666666654    443322       23566777


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHH
Q 039271          446 IGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGN  525 (609)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~  525 (609)
                      +.+++++.+....             ...+.+......++.|+|.+...++....+.+..|++.++.+++++++...+|+
T Consensus       334 ~~~~~~~~l~~~~-------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~  400 (495)
T PRK14995        334 LSALSFYGLAMTD-------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA  400 (495)
T ss_pred             HHHHHHHHHHHhc-------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence            7777766554432             122344455567888999999999898999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 039271          526 YVSSLLVVMVMG  537 (609)
Q Consensus       526 ~ig~~~~~~i~~  537 (609)
                      .+|+.+.+.+.+
T Consensus       401 ~~G~ai~g~i~~  412 (495)
T PRK14995        401 GLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.92  E-value=9.4e-23  Score=220.81  Aligned_cols=168  Identities=13%  Similarity=0.058  Sum_probs=142.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .++..++..++..+..+.+...++.+. +++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence            344444555555555555556666554 56999999999999999999999999999999996 9999999999998888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      .+++...                      ++++.+.+.|++.|++.|...+...+++.|++|+++      |++.+++++
T Consensus       102 ~~~~~~~----------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~  153 (434)
T PRK11663        102 NILFGFS----------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWN  153 (434)
T ss_pred             HHHHHHH----------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHH
Confidence            8877776                      668888899999999999888999999999999888      999999999


Q ss_pred             HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIAL  254 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~  254 (609)
                      .+.++|+.++|.+++++.+.+|||+.|++.++..++..
T Consensus       154 ~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        154 TAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            99999999999999999988999999998776655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=7.2e-23  Score=222.85  Aligned_cols=144  Identities=16%  Similarity=0.282  Sum_probs=123.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHH
Q 039271           91 NANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAI  170 (609)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (609)
                      ..+.+++.+++.++..++.+++|+++||+ |||++++.+.+++.++.++.....                   ...+.+.
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~  129 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAA-------------------FALSVEM  129 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhc-------------------cccchHH
Confidence            89999999999999999999999999996 999999999999888888776541                   1134568


Q ss_pred             HHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhh---hhcccccchhHHHHHHH
Q 039271          171 FYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTIL---VYYEDSGKWTLGFLVSL  247 (609)
Q Consensus       171 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~---~~l~~~~g~~~~f~~~~  247 (609)
                      ++++|++.|++.+...+...++++|++|+++      |++.+++++.+.++|..+++.++   +.+.+..+||+.|++.+
T Consensus       130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~  203 (481)
T TIGR00879       130 LIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL  203 (481)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence            8999999999999999999999999999988      99999999999999999999999   77777789999999976


Q ss_pred             HHHHHHHHHHHhc
Q 039271          248 ASAVIALLSYLMG  260 (609)
Q Consensus       248 ~~~~~~~~~~~~~  260 (609)
                      +..++.++..++.
T Consensus       204 ~~~~~~~~~~~~l  216 (481)
T TIGR00879       204 IPAGLLFLGLFFL  216 (481)
T ss_pred             HHHHHHHHHHhcC
Confidence            6655555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=2.1e-22  Score=211.53  Aligned_cols=358  Identities=12%  Similarity=-0.004  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 039271           61 LLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLL  140 (609)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  140 (609)
                      ++...++..++.......+|.|.. +++.+..+.+++.+++.++..++.++.|+++||+ ||||++..+.++..++..+.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            445566666666666677777765 5899999999999999999999999999999996 99999999988887777766


Q ss_pred             HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHh
Q 039271          141 SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLN  220 (609)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  220 (609)
                      .......                 ..+.+.++++|++.|++.+...+...+++.|++|+++      |++.+++.+...+
T Consensus        82 ~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  138 (365)
T TIGR00900        82 PFVALLG-----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRS  138 (365)
T ss_pred             HHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHH
Confidence            6651100                 1268889999999999999999999999999999887      9999999999999


Q ss_pred             hhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhh
Q 039271          221 VGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELY  300 (609)
Q Consensus       221 ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  300 (609)
                      +|..++|.+++++.+..||++.|++.++..+++.+..+..+.+..+++ +.++.+.                  +     
T Consensus       139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~-----  194 (365)
T TIGR00900       139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS-EIQALSN------------------A-----  194 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc-cccccch------------------h-----
Confidence            999999999999998899999999887766655544433322111100 0000000                  0     


Q ss_pred             hhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHH-HHHHHHHHHHHhcccce
Q 039271          301 EVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPI-WLCTIIYSVVFTQMASL  379 (609)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  379 (609)
                                        ...+..+.               ++     ...+.+.+...... +.....+........+.
T Consensus       195 ------------------~~~~~~~~---------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (365)
T TIGR00900       195 ------------------VLRDTREG---------------IK-----FVLKNPLLRTLLLLALLFNLVFAPAIVALFPY  236 (365)
T ss_pred             ------------------HHHHHHhH---------------HH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                              00000000               00     00000111111111 11111111111111111


Q ss_pred             eeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 039271          380 FVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEI  459 (609)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  459 (609)
                      +..+..+.+      ....+.......+..++...+.+++    .+|.++       ...+..+..+.+++++...+.. 
T Consensus       237 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-  298 (365)
T TIGR00900       237 VQSKYLGRG------STHYGWVLAAFGLGALLGALLLGLL----GRYFKR-------MALMTGAIFVIGLAILVVGLTP-  298 (365)
T ss_pred             HHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhch-------hHHHHHHHHHHHHHHHHHHhhc-
Confidence            111100111      1112333334444444555555443    344322       2234555666666666555431 


Q ss_pred             hhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039271          460 QRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMG  537 (609)
Q Consensus       460 ~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~  537 (609)
                                   + +.+..+...++.+++.....+...+++.+..|++.|+++.|+.++...++..+++.+.+.+.+
T Consensus       299 -------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       299 -------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             -------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         1 345566677888999988899999999999999999999999999999999999999987754

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.92  E-value=4.9e-22  Score=209.98  Aligned_cols=156  Identities=13%  Similarity=0.048  Sum_probs=123.5

Q ss_pred             HhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 039271           73 FGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTG  152 (609)
Q Consensus        73 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (609)
                      ..+.+.+| .+.+++|++..+.|++.+.+.+++.+++++.|+++||+ |||+++..+.+....+.......         
T Consensus         8 ~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~---------   76 (368)
T TIGR00903         8 VTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP---------   76 (368)
T ss_pred             HHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh---------
Confidence            33334444 56778999999999999999999999999999999996 99988765554444433212221         


Q ss_pred             CCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhh
Q 039271          153 CGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVY  232 (609)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~  232 (609)
                                   .+++.+++.|++.|++.+. .+.....++|++|+++      |++.+++.+.+.++|..+++.++++
T Consensus        77 -------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~  136 (368)
T TIGR00903        77 -------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLK  136 (368)
T ss_pred             -------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         3578899999999999986 4555666799999877      9999999999999999999999999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          233 YEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       233 l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +.+.+|||+.|++.++..++..++++.
T Consensus       137 l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       137 IYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999877665555444433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.91  E-value=2.8e-22  Score=214.82  Aligned_cols=378  Identities=15%  Similarity=0.068  Sum_probs=238.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhh-----hhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENAN-----AANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL  131 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  131 (609)
                      ....+.+..++...++....++++.|++ ++|.+..+     .+++.+++.+...++.++.|+++||+ |||+++..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence            4555666777788888888888998876 58887654     48889999999999999999999996 99999999988


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +..++.+++...                      .+.+.+++.|++.|++.+ ..+...+++.|.+|+++      |++.
T Consensus        93 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~  143 (408)
T PRK09874         93 GMGIVMVLMGLA----------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWA  143 (408)
T ss_pred             HHHHHHHHHHHH----------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHH
Confidence            888877766665                      568888999999998765 45777888999999887      8999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccc
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVV  291 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      .++++...++|..++|.+++.+.+..+|++.|++.++..++..+..+...++..+  +.+++....              
T Consensus       144 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------------  207 (408)
T PRK09874        144 LGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEMLH--------------  207 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhH--------------
Confidence            9999999999999999999999888999999998887766555544332222110  000000000              


Q ss_pred             cCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHH-HHHHHHHH
Q 039271          292 VPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPI-WLCTIIYS  370 (609)
Q Consensus       292 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  370 (609)
                                                  ..+..+..           +++            +........ +.......
T Consensus       208 ----------------------------~~~~~~~~-----------~~~------------~~~~~~~~~~~~~~~~~~  236 (408)
T PRK09874        208 ----------------------------MREVVTSL-----------KNP------------KLVLSLFVTTLIIQVATG  236 (408)
T ss_pred             ----------------------------HHHHHHhC-----------cCC------------chHHHHHHHHHHHHHHHH
Confidence                                        00000000           000            000000000 00000000


Q ss_pred             HHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHH
Q 039271          371 VVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLA  450 (609)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~  450 (609)
                      ......+.+.....    ..........+.+..+..+..++..+..+++    .+|++++       ..+..+..+..++
T Consensus       237 ~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l----~dr~g~~-------~~~~~~~~~~~~~  301 (408)
T PRK09874        237 SIAPILTLYVRELA----GNVSNIAFISGMIASVPGVAALLSAPRLGKL----GDRIGPE-------KILITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccccc-------hhHHHHHHHHHHH
Confidence            00000111110000    0000000011222223334444444555554    4444332       2344555555555


Q ss_pred             HHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 039271          451 MIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSL  530 (609)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~  530 (609)
                      ++.....                .+.+..+...++.|++.+...|...+.+.+..|++.+++..++++....+|..+|+.
T Consensus       302 ~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~  365 (408)
T PRK09874        302 LIPMSFV----------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL  365 (408)
T ss_pred             HHHHHHh----------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH
Confidence            5544432                133445556677888888888998889889999999999999999999999999999


Q ss_pred             HHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhc
Q 039271          531 LVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICA  579 (609)
Q Consensus       531 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~  579 (609)
                      +.+.+.+.                .++...|++.+++.+++.+..+...
T Consensus       366 ~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        366 MGAAISAN----------------YGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHhh----------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99877532                1244567777877777766655443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.91  E-value=1.4e-21  Score=209.67  Aligned_cols=173  Identities=11%  Similarity=0.027  Sum_probs=139.3

Q ss_pred             hhHHHHHHHHHHHHH---HHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           56 KYASILLANQGLATL---AFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~---~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      +.++.++....+...   +...+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~   87 (406)
T PRK15402         10 QALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAF   87 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            334444444344333   33334444554 4578999999999999999999999999999999996 999999999988


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+.+...                      .+.+.+++.|++.|++.+...+...+.+.|.+|+++      |.+..
T Consensus        88 ~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~  139 (406)
T PRK15402         88 FILTCLAILLA----------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKIT  139 (406)
T ss_pred             HHHHHHHHHHH----------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHH
Confidence            88888777666                      567888899999999999888888999999999887      78888


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      ++.+....+|..++|.+++++.+..+|++.|++.++..++..+..+
T Consensus       140 ~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        140 ALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999998888999999987777666555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.91  E-value=6.3e-22  Score=211.54  Aligned_cols=367  Identities=13%  Similarity=0.044  Sum_probs=233.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 039271           67 LATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFL  146 (609)
Q Consensus        67 ~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  146 (609)
                      .....++...+.+| .+.+++|.|.++.+++.+.+.++..+++++.|+++||+ |||+++..+.+++.++.++++++   
T Consensus        20 ~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a---   94 (393)
T PRK09705         20 NMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY---   94 (393)
T ss_pred             HcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---
Confidence            33333455555555 46778999999999999999999999999999999996 99999999999999999999887   


Q ss_pred             ccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHH
Q 039271          147 MIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS  226 (609)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  226 (609)
                                         ++++.++++|++.|++.+...+....++.|++| ++      |++..+.+..+.++|..++
T Consensus        95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g  148 (393)
T PRK09705         95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG  148 (393)
T ss_pred             -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence                               668889999999999999999998999999987 66      8899999999999999999


Q ss_pred             hhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCC
Q 039271          227 NTILVYYEDSG-KWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGP  305 (609)
Q Consensus       227 ~~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~  305 (609)
                      +.+++++.++. +||+.+.+.++..++.+...+...++    +|++++                     ++         
T Consensus       149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------~~---------  194 (393)
T PRK09705        149 AAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH---------------------KT---------  194 (393)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc---------------------CC---------
Confidence            99999888764 89988766554443333322222111    111000                     00         


Q ss_pred             cccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEecc
Q 039271          306 ESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGD  385 (609)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (609)
                          +      .                      .+.+.     .++.+.....+...+....++....+.+.++..  .
T Consensus       195 ----~------~----------------------~~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~  235 (393)
T PRK09705        195 ----T------T----------------------TPVRV-----VFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--I  235 (393)
T ss_pred             ----C------c----------------------CCccc-----ccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence                0      0                      00000     000011111111112222222333333333322  1


Q ss_pred             cccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 039271          386 VMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYI  465 (609)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  465 (609)
                      +.+      ....+.......+..++...+.+++    .+|.+++       ..+.+++.+..+++..+....       
T Consensus       236 g~s------~~~ag~~~~~~~i~~i~g~~~~g~l----~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~-------  291 (393)
T PRK09705        236 GAS------AQYSGSLLALMTLGQAAGALLMPAM----ARHQDRR-------KLLMLALVLQLVGFCGFIWLP-------  291 (393)
T ss_pred             CCC------hhhhhHHHHHHHHHHHHHHHHHHHH----Hhhccch-------HHHHHHHHHHHHHHHHHHHcc-------
Confidence            111      1122334444455555555555554    4443322       234556666666655444321       


Q ss_pred             CCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 039271          466 SPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAP-DGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDK  544 (609)
Q Consensus       466 ~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~  544 (609)
                             . +.....  .++.+++.+...|.......+..+ ++.+++..++.+....+++.+++.+.+++.+.+     
T Consensus       292 -------~-~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-----  356 (393)
T PRK09705        292 -------L-QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-----  356 (393)
T ss_pred             -------c-hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence                   1 111111  234566666667776666667764 678999999999999999999999999887643     


Q ss_pred             CCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccccccc
Q 039271          545 PGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGIN  586 (609)
Q Consensus       545 ~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  586 (609)
                                +.+...|.+.++++++..+..+.+.++++.+.
T Consensus       357 ----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        357 ----------GNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             ----------CCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                      12233566667777777777677777655543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=7.7e-22  Score=212.17  Aligned_cols=178  Identities=13%  Similarity=0.075  Sum_probs=150.0

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 039271           52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL  131 (609)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  131 (609)
                      |.+|+.+..+++..+++......+... ...+++++|.+..+.+++.+++.+++.+++++.|+++||+ |||+++..+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFA-GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHH-HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence            345666666666666666665555444 4578999999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      ++.++.++.+++                      ++.+.+++.|++.|++.+...|....+++|++|+++      |++.
T Consensus        82 ~~~~~~~~~~~~----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~  133 (412)
T TIGR02332        82 LWGIASTATMFA----------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA  133 (412)
T ss_pred             HHHHHHHHHHHh----------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence            999999888887                      668889999999999999999999999999999888      9999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhccc------ccchhHHHHHHHHHHHHHHHHHHh
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYED------SGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .++++.+.++|..+++.+++++.+      ..|||+.|++.++..++..++.++
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988753      469999999987766554444433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=6.3e-22  Score=216.71  Aligned_cols=175  Identities=13%  Similarity=0.083  Sum_probs=134.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      +++.++......++..+..+...+.++ ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            344555555555556665555555444 66788999999999999999999999999999999996 9999999998888


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.++.+++                      .+.+.+++.|++.|++.+... .....++|++|+++      |+++++
T Consensus       112 ~~~~~~~~~~----------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g  162 (476)
T PLN00028        112 APAVFCMSLV----------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANG  162 (476)
T ss_pred             HHHHHHHHHh----------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHH
Confidence            8887777766                      567788889999999888654 34567899999988      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhccc---------ccchhHHHHHHHHHHHHHHHHHHh
Q 039271          214 YFYFFLNVGSLFSNTILVYYED---------SGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~---------~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +.+...++|+.+++.+.+.+..         ..|||+.|++.+++.++..+..+.
T Consensus       163 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        163 IAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9888888888877666654421         258999999988776655444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=1.7e-21  Score=210.89  Aligned_cols=175  Identities=15%  Similarity=0.181  Sum_probs=129.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC---CchhhhhH---HHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQ---QENANAAN---NVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQ  130 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g---~~~~~~~~---~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~  130 (609)
                      .+....+..+++.+.+.. .++...++.++++   .+..+.+.   +.+...++..++.+++|+++||+ ||||++..+.
T Consensus        23 ~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~  100 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISV  100 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            344444556667766665 5666678888874   44554333   34444555559999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccch
Q 039271          131 LIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTL  210 (609)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  210 (609)
                      +++.++.++++++  |++.+            ........+.+.|+++|++.|+..|...++++|++|+++      |++
T Consensus       101 ~~~~~~~~~~~~~--~~~~~------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~  160 (432)
T PRK10406        101 CMMCFGSLVIACL--PGYET------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGF  160 (432)
T ss_pred             HHHHHHHHHHhhc--CCchh------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccH
Confidence            9999999888776  21000            000224578899999999999999999999999999988      999


Q ss_pred             hHHHHHHHHhhhHHHHhhhhhhcc--------cccchhHHHHHHHHHHHHH
Q 039271          211 FFCYFYFFLNVGSLFSNTILVYYE--------DSGKWTLGFLVSLASAVIA  253 (609)
Q Consensus       211 ~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~~  253 (609)
                      ..++.+.+.+.|..+++.+...+.        +.+|||++|++.++..++.
T Consensus       161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            999888888888888876654433        2579999999877655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=1.7e-22  Score=219.97  Aligned_cols=153  Identities=16%  Similarity=0.091  Sum_probs=127.2

Q ss_pred             HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 039271           77 VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDG  156 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (609)
                      .+++ .+.+++|.+.++++++.+.+.+...++.+++|+++||+ |||++++.+.++..++.++++++             
T Consensus        40 ~~~~-~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~-------------  104 (455)
T TIGR00892        40 VFFK-ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS-------------  104 (455)
T ss_pred             hhHH-HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh-------------
Confidence            3444 45678999999999999999999999999999999995 99999999998888888877776             


Q ss_pred             CCccCCCcchhHHHHHH-HHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc
Q 039271          157 FISCKPLSSIFAAIFYL-SIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       157 ~~~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  235 (609)
                               .+.+.+++ .|++.|++.+...+...+++.++++ ++      |++..++.+.+.++|..++|.+++++.+
T Consensus       105 ---------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~  168 (455)
T TIGR00892       105 ---------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFE  168 (455)
T ss_pred             ---------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                     45566554 4688899988766667788889885 55      8999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhc
Q 039271          236 SGKWTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       236 ~~g~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                      .+|||+.|++.+++.+++.+..++.
T Consensus       169 ~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       169 SFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999887766655544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=4.4e-22  Score=210.80  Aligned_cols=154  Identities=18%  Similarity=0.161  Sum_probs=137.0

Q ss_pred             HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 039271           77 VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDG  156 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (609)
                      ....+++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+++++.             
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------   79 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------   79 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence            3444567889999999999999999999999999999999996 99999999999888888888777             


Q ss_pred             CCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc
Q 039271          157 FISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS  236 (609)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~  236 (609)
                               .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++++.+.
T Consensus        80 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  144 (399)
T TIGR00893        80 ---------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIH  144 (399)
T ss_pred             ---------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence                     568899999999999999999999999999999887      99999999999999999999999999888


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh
Q 039271          237 GKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       237 ~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .+|++.|++.++..++..+..+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       145 FSWQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             CCchHHHHHHHHHHHHHHHHhhh
Confidence            99999999887766655554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=1e-21  Score=212.04  Aligned_cols=165  Identities=13%  Similarity=0.176  Sum_probs=143.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      ++.+....+..+...+..+.. .+...++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~   94 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            445555556666666666554 3444567789999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+...++                      .+.+.++++|++.|++.+...+....++.|.+|+++      |++..++
T Consensus        95 ~~~~~~~~~----------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~  146 (426)
T PRK12307         95 VGTGLSGLA----------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAF  146 (426)
T ss_pred             HHHHHHHHH----------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhH
Confidence            988888777                      678899999999999999999999999999999988      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLAS  249 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~  249 (609)
                      +..+.++|.++++.+.+.+.+..+|++.|++.++.
T Consensus       147 ~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999998889999999876543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=8.4e-22  Score=214.52  Aligned_cols=153  Identities=10%  Similarity=0.080  Sum_probs=122.9

Q ss_pred             HHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 039271           78 NLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGF  157 (609)
Q Consensus        78 ~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (609)
                      +..+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||++++.+.++.+++.+++.+.  +.          
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~--~~----------  115 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFV--PW----------  115 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhh--hc----------
Confidence            344577777 99999999999999999999999999999995 99999999998888888777665  11          


Q ss_pred             CccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHH-HHhhhhhhcccc
Q 039271          158 ISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSL-FSNTILVYYEDS  236 (609)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~~~~i~~~l~~~  236 (609)
                            ...+.+.+++.|++.|++.+...|.....+.|++|+++      |++++++++.+.++|+. .+|+++..+...
T Consensus       116 ------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        116 ------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             ------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence                  01356778888999999999988888888999999888      99999999999999874 456544333334


Q ss_pred             cchhHHHHHHHHHHHHHHHH
Q 039271          237 GKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       237 ~g~~~~f~~~~~~~~~~~~~  256 (609)
                      .|||+.|++.++..++..++
T Consensus       184 ~gw~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        184 NDWHAALYMPAFAAILVALF  203 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            58999999887665554433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=8e-22  Score=216.34  Aligned_cols=398  Identities=13%  Similarity=0.109  Sum_probs=242.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      +..+++..+...+........+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            44455555666666555545555 55678999999999999999999999999999999996 99999999999999888


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      +++...                      ++.+.++++|+++|++.+...+...+++.|.+|+++      |+++.++++.
T Consensus        82 ~~~~~~----------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~  133 (485)
T TIGR00711        82 LLCGVA----------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGL  133 (485)
T ss_pred             HHHhCc----------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHH
Confidence            877766                      668889999999999999999999999999999887      9999999999


Q ss_pred             HHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHH-HhhcccccCCCc
Q 039271          218 FLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAA-ARKWNVVVPANS  296 (609)
Q Consensus       218 ~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~  296 (609)
                      ..++|..++|.+++++.+.+||++.|++.+...++..++.....++.++++.  ++.+.....+... .....       
T Consensus       134 ~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~-------  204 (485)
T TIGR00711       134 TVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLL-------  204 (485)
T ss_pred             HHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHH-------
Confidence            9999999999999999999999999998876666555544433332211111  1111111100000 00000       


Q ss_pred             hhhhhhcCCcccccCccccccCchhhHHh--h----h-hcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHH
Q 039271          297 DELYEVAGPESAIKGSRKILHSNEIEFLD--K----A-ATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIY  369 (609)
Q Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (609)
                         +...+.++     ..+..........  .    . -...+.+...+..+++.+     ++.+.....+..++....+
T Consensus       205 ---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  271 (485)
T TIGR00711       205 ---YGLSEGPE-----RGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLF-----KYRNFTIGCVYMSLLGLGL  271 (485)
T ss_pred             ---HHHhhCCC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHH-----cCCChHHHHHHHHHHHHHH
Confidence               00000000     0000000000000  0    0 000000000000111100     0001111111112222222


Q ss_pred             HHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHH
Q 039271          370 SVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGML  449 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~  449 (609)
                      +......+.++.. ..+.+      ....+.......+..++..++.+++.    +|.+       ++..+.++.++.++
T Consensus       272 ~~~~~~~p~~~~~-~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~----~r~~-------~~~~~~~g~~~~~~  333 (485)
T TIGR00711       272 YGSFYLLPLYLQQ-VLGYT------ALQAGLHILPVGLAPMLSSPIAGRMG----DKID-------PRKLVTIGLILYAV  333 (485)
T ss_pred             HHHHHHHHHHHHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH----hhcC-------cHHHHHHHHHHHHH
Confidence            2222212222111 11111      11233444455555666666666553    3432       22346677777777


Q ss_pred             HHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHH
Q 039271          450 AMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSS  529 (609)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~  529 (609)
                      +++.+.+..            ....+.+..+...++.|++.+...++....+.+..|++.+++++|+.++.+.+|+.+|+
T Consensus       334 ~~~~~~~~~------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~  401 (485)
T TIGR00711       334 GFYWRAFTF------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGT  401 (485)
T ss_pred             HHHHHhccC------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence            776665211            12334455566678889999888888878888899999999999999999999999999


Q ss_pred             HHHHHhhh
Q 039271          530 LLVVMVMG  537 (609)
Q Consensus       530 ~~~~~i~~  537 (609)
                      .+.+.+.+
T Consensus       402 ~i~g~~~~  409 (485)
T TIGR00711       402 ALITTILT  409 (485)
T ss_pred             HHHHHHHH
Confidence            99987764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.91  E-value=3.6e-21  Score=205.72  Aligned_cols=173  Identities=10%  Similarity=0.100  Sum_probs=148.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      ..|+.+..+....++.....|...+.++.+ .+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~   94 (394)
T PRK10213         17 PNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVL   94 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHH
Confidence            356666666666555555666666666654 568999999999999999999999999999999995 999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+++.+.                      .+++.+++.|++.|++.+...+...+++.|++|+++      |+++.
T Consensus        95 ~~~~~~~~~~~----------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~  146 (394)
T PRK10213         95 LTLSCLLVSFA----------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKAL  146 (394)
T ss_pred             HHHHHHHHHHH----------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHH
Confidence            99888877776                      678999999999999999999999999999999888      99999


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  255 (609)
                      ++.....++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus       147 ~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        147 SVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988765554443

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=4.2e-21  Score=208.16  Aligned_cols=176  Identities=16%  Similarity=0.155  Sum_probs=130.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--CCchhhhhHHH-----HHHHHHHHHHHhHHHHHhhhccchhHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVL--QQENANAANNV-----SKWTGTVYMCSLIGAFLSDSYWGRYLTCA  127 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grr~~~~  127 (609)
                      +|.+...++..+++.+.+..+....+.++.+++  +.++. .+++.     ++..++..++.++.|+++||+ |||+++.
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~   98 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHH
Confidence            455666667777887777765555555666655  56655 34443     234555678888899999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          128 VFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      .+.+++.++.++++++  |+..+            ..-.....+++.|+++|++.|+..+....++.|++|+++      
T Consensus        99 ~~~~~~~~~~~~~~~~--~~~~~------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------  158 (438)
T PRK09952         99 LTVWMMGIATALIGLL--PSFST------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------  158 (438)
T ss_pred             HHHHHHHHHHHHHhcC--CcHHH------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------
Confidence            9999999998888876  11000            000012358889999999999999999999999999988      


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhhhcc--------cccchhHHHHHHHHHHHH
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILVYYE--------DSGKWTLGFLVSLASAVI  252 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~~l~--------~~~g~~~~f~~~~~~~~~  252 (609)
                      |+...+....+..+|..+++.+..++.        +.+|||++|++.++..++
T Consensus       159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            988888888888888888876665543        357999999987765433

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=3.3e-22  Score=220.83  Aligned_cols=147  Identities=16%  Similarity=0.193  Sum_probs=128.8

Q ss_pred             HHHHhhCCc---hhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 039271           82 FLTRVLQQE---NANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFI  158 (609)
Q Consensus        82 yl~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (609)
                      .+.++++++   ..+.++..+++.++..++.++.|+++||+ |||++++++.++..++.++.+++               
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---------------  177 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---------------  177 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence            356788998   89999999999999999999999999995 99999999999888888877776               


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccc
Q 039271          159 SCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGK  238 (609)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g  238 (609)
                             .+++.+++.|++.|++.+...+...+++.|.+|+++      |+...+++..+..+|.+++|.++..+.+   
T Consensus       178 -------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---  241 (505)
T TIGR00898       178 -------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---  241 (505)
T ss_pred             -------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---
Confidence                   678899999999999999999999999999999988      9999999988999999999988776654   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Q 039271          239 WTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       239 ~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                      ||+.|++.++..++..+..++.
T Consensus       242 wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       242 WRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998887766665555443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=2.3e-22  Score=210.28  Aligned_cols=350  Identities=16%  Similarity=0.175  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 039271           62 LANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLS  141 (609)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  141 (609)
                      ++..++..+......+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++..
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4455666666666667777688889999999999999999999999999999999995 999999999999988855555


Q ss_pred             HHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhh
Q 039271          142 VLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNV  221 (609)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  221 (609)
                      ++                      .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...++
T Consensus        81 ~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~  132 (352)
T PF07690_consen   81 FA----------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSL  132 (352)
T ss_dssp             HH----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHH
T ss_pred             hh----------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhh
Confidence            54                      345589999999999999999999999999999988      99999999999999


Q ss_pred             hHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhh
Q 039271          222 GSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYE  301 (609)
Q Consensus       222 g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~  301 (609)
                      |..++|.+++++.+..+|++.|++.++..++..++.....++.+.+++..++.++                    +    
T Consensus       133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~--------------------~----  188 (352)
T PF07690_consen  133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES--------------------E----  188 (352)
T ss_dssp             HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT--------------------T----
T ss_pred             hhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccc--------------------c----
Confidence            9999999999999889999999999888877766433332221111110000000                    0    


Q ss_pred             hcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHH-HHHHHHHHHhccccee
Q 039271          302 VAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWL-CTIIYSVVFTQMASLF  380 (609)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  380 (609)
                                     .+.                   ..++.. ..+...+.+.++..+..++ ....+.......+.++
T Consensus       189 ---------------~~~-------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  233 (352)
T PF07690_consen  189 ---------------SKK-------------------PKPLKP-GFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYL  233 (352)
T ss_dssp             -----------------H-------------------HHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---------------ccc-------------------cccccc-ccccccccchhhhhhhhhhHHHHHHHHhhcccchhh
Confidence                           000                   000100 0001112222211111111 1112222222222211


Q ss_pred             eEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039271          381 VEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQ  460 (609)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  460 (609)
                       .+..+.+ .    ....+....+..+..++...+.+++.+++.+|           ....+......+..+.+....  
T Consensus       234 -~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--  294 (352)
T PF07690_consen  234 -QEVLGFS-G----PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR-----------RRLLIAILLLILGALGLLLLP--  294 (352)
T ss_dssp             -CHHHHCC-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHCCSH--
T ss_pred             -hhccCCC-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHH--
Confidence             1111111 0    01122334444445555555666554333222           123333333333333332221  


Q ss_pred             hhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHH
Q 039271          461 RLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSS  529 (609)
Q Consensus       461 ~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~  529 (609)
                                 ...+..+.+...++.|++.+...+...+++.+.+|++.+|++.|+.++..++++.+||
T Consensus       295 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  295 -----------FSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             -----------HHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                       1124456666778899999999999999999999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.91  E-value=2.9e-22  Score=219.14  Aligned_cols=155  Identities=9%  Similarity=-0.035  Sum_probs=127.2

Q ss_pred             HHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCc
Q 039271           80 VLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFIS  159 (609)
Q Consensus        80 ~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (609)
                      ...+.+++|.+..+.|++.+.+.+++.++.+++|+++||+ |||+++..+.++..++.++.+.....             
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------  117 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------  117 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            3456789999999999999999999999999999999996 99999999888777666655542100             


Q ss_pred             cCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccccc--
Q 039271          160 CKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSG--  237 (609)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~--  237 (609)
                          ...+++.+++.|++.|++.+...|...++++|++|+++      |++.++++..+.++|..+++.+..++.+..  
T Consensus       118 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~  187 (467)
T PRK09556        118 ----GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFD  187 (467)
T ss_pred             ----ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhcc
Confidence                01568899999999999999999999999999999998      999999999999999999998887765542  


Q ss_pred             -chhHHHHHHHHHHHHHHHHHH
Q 039271          238 -KWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       238 -g~~~~f~~~~~~~~~~~~~~~  258 (609)
                       +|+..|.+.++..++..++.+
T Consensus       188 ~~~~~~f~~~g~~~~~~~i~~~  209 (467)
T PRK09556        188 GHVIGMFIFPSIIALIIGFIGL  209 (467)
T ss_pred             CcchhHHHHHHHHHHHHHHHHH
Confidence             588888887665554433333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.7e-22  Score=206.19  Aligned_cols=174  Identities=14%  Similarity=0.106  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhH---HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVG---VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~---~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      --+-+++..++...+||...   ....+++.++.++|.+|.|.+.+.+.+.+.++-.+.|.++||. +.|..+..++++.
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLils  104 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILS  104 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHH
Confidence            33556667777777888655   4456788888999999999999999999999999999999995 9999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .+..+++.++                      .+.+.+.+..++.|...|.-.|++..+++.+|++++      ||+..+
T Consensus       105 ai~nil~Gfs----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~s  156 (448)
T COG2271         105 AIVNILFGFS----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWS  156 (448)
T ss_pred             HHHHHHHhhh----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEE
Confidence            9999999988                      678899999999999999999999999999999999      999999


Q ss_pred             HHHHHHhhhHHHHhhhh--hhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          214 YFYFFLNVGSLFSNTIL--VYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +.+.+.|+|+.+.|.+.  +++..+.+||..|+++++++++..++.+.
T Consensus       157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999  89988889999999999776655444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=7.8e-22  Score=207.98  Aligned_cols=155  Identities=14%  Similarity=0.110  Sum_probs=132.0

Q ss_pred             HHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039271           72 FFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPT  151 (609)
Q Consensus        72 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (609)
                      .|.... +.+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++++.        
T Consensus        19 ~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~--------   88 (377)
T TIGR00890        19 VYTWTL-LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA--------   88 (377)
T ss_pred             Hhhhhh-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence            454434 45677889999999999999999999999999999999995 99999999999999999888887        


Q ss_pred             CCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhh
Q 039271          152 GCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV  231 (609)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  231 (609)
                                    ++.+.++++|++.|++.+...+.....+.+++| ++      |++..+++..+.++|..+++.+.+
T Consensus        89 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~  147 (377)
T TIGR00890        89 --------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLIT  147 (377)
T ss_pred             --------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHH
Confidence                          678899999999999999888888888888886 45      889999999999999888766777


Q ss_pred             hcccccchhHHHHHHHHHHHHHHHHH
Q 039271          232 YYEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       232 ~l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      .+.+..|||+.|++.++..++..+..
T Consensus       148 ~~~~~~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890       148 SVINLEGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            77777899999998887666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.90  E-value=4.4e-21  Score=202.95  Aligned_cols=169  Identities=14%  Similarity=0.029  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH-HHHHHHHHHHHH
Q 039271           62 LANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAV-FQLIFVVGLVLL  140 (609)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~~~~~~  140 (609)
                      ++..++..++.....+.++.|+.+++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3456777778888889999999999999999999999999999999999999999996 99887655 444444555555


Q ss_pred             HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccch--hHHHHHHH
Q 039271          141 SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTL--FFCYFYFF  218 (609)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~  218 (609)
                      ..+                      ++++.+++.|++.+.+.+...|...++..|..|++.      |..  ..+..+..
T Consensus        82 ~~~----------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~  133 (375)
T TIGR00899        82 AWN----------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQ  133 (375)
T ss_pred             Hhc----------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHH
Confidence            554                      557778888888887777778888888888876554      443  35777788


Q ss_pred             HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          219 LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .++|..++|.+++++.+..|||+.|++.++..++..+..+.
T Consensus       134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998899999999988776655554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=5.4e-21  Score=203.53  Aligned_cols=173  Identities=17%  Similarity=0.102  Sum_probs=149.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.++.+.+..+......+...+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            45666777777777777777777765 5678999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+++.+.                      ++++.+++.|++.|++.+...+....++.|++|+++      |++.++++
T Consensus        81 ~~~l~~~~----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  132 (382)
T PRK10091         81 GNAMFTLS----------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGM  132 (382)
T ss_pred             HHHHHHHh----------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHH
Confidence            88888777                      678999999999999999888888889999998877      88899999


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      ..+.++|..++|.+++++.+..|||+.|++.++..++..+..+
T Consensus       133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999889999999998876655544433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.90  E-value=2.9e-21  Score=206.09  Aligned_cols=174  Identities=17%  Similarity=0.235  Sum_probs=149.7

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 039271           52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL  131 (609)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  131 (609)
                      +.+|+.+..+.+..+...+..+......+ .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            34577777777788888887776655555 56788999999999999999999999999999999996 99999999998


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +..++.+++.+.                      ++++.+++.|++.|++.+...+...+++.|.+|+++      |++.
T Consensus        86 ~~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~  137 (405)
T TIGR00891        86 LFSAGTLACGFA----------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKA  137 (405)
T ss_pred             HHHHHHHHHHHh----------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHH
Confidence            888888877776                      568889999999999999999999999999999988      9999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccc--hhHHHHHHHHHHHHHHH
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGK--WTLGFLVSLASAVIALL  255 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g--~~~~f~~~~~~~~~~~~  255 (609)
                      .++.+.+.++|..+++.+++.+.+..+  |++.|++.++..++.++
T Consensus       138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW  183 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887665  99999886655544443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=1.9e-20  Score=198.65  Aligned_cols=175  Identities=13%  Similarity=0.065  Sum_probs=146.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      ++.++.+.+..+...++.....+.+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            34444455555555555555555555 45678999999999999999999999999999999996 99999999999888


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+++...                      ++.+.+.+.|++.|++.+...+...+++.|.+|+++      |++.+++
T Consensus        82 ~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  133 (385)
T TIGR00710        82 LSSLGLALS----------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSI  133 (385)
T ss_pred             HHHHHHHHH----------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHH
Confidence            888877776                      567889999999999999999999999999999887      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .+...++|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus       134 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       134 LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998899999999887766655554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=1.6e-20  Score=201.88  Aligned_cols=153  Identities=14%  Similarity=0.106  Sum_probs=133.1

Q ss_pred             HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 039271           77 VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDG  156 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (609)
                      +.+|. +.++++.+..+.++.++++.++..++++++|+++||+ |||+++..+.+++.++.+++...             
T Consensus        37 p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a-------------  101 (413)
T PRK15403         37 PGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT-------------  101 (413)
T ss_pred             cCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------
Confidence            33443 5678999999999999999999999999999999995 99999999999988888887776             


Q ss_pred             CCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc
Q 039271          157 FISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS  236 (609)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~  236 (609)
                               ++.+.++++|+++|++.+...+...+++.|.+|+++      |++.+++++...++|..+||.+++++.+.
T Consensus       102 ---------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~  166 (413)
T PRK15403        102 ---------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHF  166 (413)
T ss_pred             ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     668889999999999988777777888999999887      88889999999999999999999999888


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHh
Q 039271          237 GKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       237 ~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .|||+.|++.++..+++.+..+.
T Consensus       167 ~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        167 VHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999988776666554433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=8.4e-21  Score=197.75  Aligned_cols=346  Identities=19%  Similarity=0.212  Sum_probs=252.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 039271           60 ILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVL  139 (609)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  139 (609)
                      .+....+...+.++...+..+.|.+ ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+..+.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            4556667777777777788887764 6799999999999999999999999999999996 9999999999998888888


Q ss_pred             HHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHH
Q 039271          140 LSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFL  219 (609)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  219 (609)
                      +...                      ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...
T Consensus        81 ~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  132 (352)
T cd06174          81 LAFA----------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGF  132 (352)
T ss_pred             HHHh----------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHH
Confidence            7776                      568889999999999999999999999999999988      999999999999


Q ss_pred             hhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhh
Q 039271          220 NVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDEL  299 (609)
Q Consensus       220 ~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l  299 (609)
                      ++|..++|.+++.+.+..+|++.|++.++..++..+.....+             +..                      
T Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----------------------  177 (352)
T cd06174         133 GLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------RLL----------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------HHH----------------------
Confidence            999999999999999988999999988877666655443321             000                      


Q ss_pred             hhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccce
Q 039271          300 YEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASL  379 (609)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (609)
                                                                            ..  ..+..+.............+.+
T Consensus       178 ------------------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~  201 (352)
T cd06174         178 ------------------------------------------------------LL--LALAFFLLSFGYYGLLTYLPLY  201 (352)
T ss_pred             ------------------------------------------------------HH--HHHHHHHHHhHHHHHHHHHHHH
Confidence                                                                  00  0000011111111111111111


Q ss_pred             eeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhH-HHHHHHHHHHHHHHHHHHHH
Q 039271          380 FVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQ-RMGIGLIIGMLAMIAAGATE  458 (609)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~  458 (609)
                      ... ..+.+      ....+.......+...+...+..++.++..+|           . .+..+.++..++++.+...+
T Consensus       202 ~~~-~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~  263 (352)
T cd06174         202 LQE-VLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRR-----------RLLLLIGLLLAALGLLLLALAP  263 (352)
T ss_pred             HHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHhc
Confidence            110 00111      12234455555666666666666654433333           2 46677777777777776532


Q ss_pred             HhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039271          459 IQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGI  538 (609)
Q Consensus       459 ~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~  538 (609)
                                      +.+..+...++.+++.....+...+++.+..|++.|++.+|+.+..+.+++.+++.+.+.+.+.
T Consensus       264 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~  327 (352)
T cd06174         264 ----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT  327 (352)
T ss_pred             ----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                            3566677788899999999999999999999999999999999999999999999999877531


Q ss_pred             cccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHh
Q 039271          539 TAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYL  576 (609)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~  576 (609)
                                      .++...+++.+++.+++.++.+
T Consensus       328 ----------------~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         328 ----------------GGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             ----------------cCcchHHHHHHHHHHHHHHHhe
Confidence                            1223456777777776666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=4.5e-21  Score=211.99  Aligned_cols=404  Identities=14%  Similarity=0.154  Sum_probs=234.4

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHH
Q 039271           93 NAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFY  172 (609)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (609)
                      +.+++.+...++..++.+++|+++|++ |||++++++.+++.+|.++++++                      .+...+.
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------~~~~~l~  146 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------PSWYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------hhHHHHH
Confidence            448999999999999999999999996 99999999999999999999998                      7899999


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc-cchhHHHHHHHHHHH
Q 039271          173 LSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS-GKWTLGFLVSLASAV  251 (609)
Q Consensus       173 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~~~~  251 (609)
                      ++|++.|+|.|+.....+.+++|..|++.      ||...+..+...++|..++.+++....+. ++||..+.+..+..+
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~  220 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAV  220 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999998      99999999999999999995444443332 489988888777666


Q ss_pred             HHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCcccccc---CchhhHHhhhh
Q 039271          252 IALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILH---SNEIEFLDKAA  328 (609)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  328 (609)
                      +..+..+.                                .||+|+++.++++.+++++...++..   .+.....+...
T Consensus       221 ~~~~~~~~--------------------------------~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~  268 (513)
T KOG0254|consen  221 ILALGMLF--------------------------------LPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLK  268 (513)
T ss_pred             HHHHHHHh--------------------------------CCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            65555333                                33444444444444333333332222   11111111100


Q ss_pred             --cccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccchhH
Q 039271          329 --TITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDI  406 (609)
Q Consensus       329 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (609)
                        ...+.........|+.+..  ....++......+..++.+.......+++....+..+....  . .........++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~--~-~~~~~~~~~v~~  343 (513)
T KOG0254|consen  269 IKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSD--T-FLASIILGVVNF  343 (513)
T ss_pred             HHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCc--h-HHHHHHHHHHHH
Confidence              0000000000001111111  01222222222222222221111111111111111111111  0 111122223333


Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHH
Q 039271          407 CSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLV  486 (609)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~  486 (609)
                      +..++...+    +|+++||           ..+..|.+.+.+++++++.......+....   .....+..+...++..
T Consensus       344 ~~t~~~~~l----vd~~gRr-----------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v  405 (513)
T KOG0254|consen  344 LGTLVATYL----VDRFGRR-----------KLLLFGAAGMSICLVILAVVGVFALYYPNS---SKGAGWLAIVFLCLFI  405 (513)
T ss_pred             HHHHHHHHH----HHHhccH-----------HHHHHhHHHHHHHHHHHHHHHHHhccCCCc---ccchhHHHHHHHHHHH
Confidence            333333333    3333444           357778888888877776654321000000   0111222222222233


Q ss_pred             HHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHH
Q 039271          487 GASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAV  566 (609)
Q Consensus       487 g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~  566 (609)
                      ........|..+.+..|.+|.+.|+.+.++....+++.+++-...........                .....|..+++
T Consensus       406 ~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------------~~~~~f~~f~~  469 (513)
T KOG0254|consen  406 FSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------------GIGGTFGYFGG  469 (513)
T ss_pred             HHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cccchHHHHHH
Confidence            33333334555567789999999999999999999988866655444332211                01124556666


Q ss_pred             HHHHHHH-HHhhhccccccccCCchhhHHHh
Q 039271          567 LTAFDFV-IYLICANWYKGINLDEDSCEKEM  596 (609)
Q Consensus       567 ~~~v~~v-~~~~~~~~~~~~~~~~~~~~~~~  596 (609)
                      ++.+..+ .++++.||+|++++||.++....
T Consensus       470 ~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  470 ICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            6666666 78889999999999998876544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.5e-21  Score=206.20  Aligned_cols=398  Identities=13%  Similarity=0.079  Sum_probs=243.0

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHH
Q 039271           95 ANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLS  174 (609)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (609)
                      +.+++++.++.+++.+++|+++||+ |||..+.++.++..++.+++.++..                   .+.+.++.++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~-------------------~~~~e~li~G  122 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKS-------------------APSFEMLILG  122 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHHHHHHH
Confidence            5668889999999999999999996 9999999999988888887777632                   2558899999


Q ss_pred             HHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhh--hcccccchhHHHHHHHHHHHH
Q 039271          175 IYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV--YYEDSGKWTLGFLVSLASAVI  252 (609)
Q Consensus       175 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~--~l~~~~g~~~~f~~~~~~~~~  252 (609)
                      |++.|+..|......+.++.|..|++.      ||..-.+..++.++|..++..++.  .+...-.|++.+.+..+..++
T Consensus       123 R~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~  196 (485)
T KOG0569|consen  123 RLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL  196 (485)
T ss_pred             HHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999      999999999999999999976663  444556699888888877776


Q ss_pred             HHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhh-hcCCcccccCccccccCchhhHH--h-hhh
Q 039271          253 ALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYE-VAGPESAIKGSRKILHSNEIEFL--D-KAA  328 (609)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~--~-~~~  328 (609)
                      .++...+                                .||+|.++.. +++.++|++..++.+...+.+-.  + ..+
T Consensus       197 ~l~~l~~--------------------------------~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e  244 (485)
T KOG0569|consen  197 QLALLPF--------------------------------LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE  244 (485)
T ss_pred             HHHHHhc--------------------------------CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence            6665544                                6778888777 45566666666655433221110  0 000


Q ss_pred             cccccCC-CCCCCCCcccchhhHHHHHH-HHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccchhH
Q 039271          329 TITDNDL-AGPKNPWKLCTVTQVEEAKC-VLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDI  406 (609)
Q Consensus       329 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (609)
                      ...+... ..+.+-|+.+..   +..|+ +...+.+.+...+-.......++.......++...  .....+..+..++.
T Consensus       245 ~~~~~~~~~~~~sl~~~~~~---~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~--~a~~an~~~g~v~~  319 (485)
T KOG0569|consen  245 IEEEELEKKKQISLRQLLKN---PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE--EAQYANLGIGIVNL  319 (485)
T ss_pred             HHHhccccccCCcHHHHhcC---cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHH
Confidence            0000000 000111111111   01111 11111111111110000000001001100011100  00111122333333


Q ss_pred             HHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccc-hhHH--HHHHH
Q 039271          407 CSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSL-SIFW--QIPQY  483 (609)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~--~i~~~  483 (609)
                      ...++...    ++++++||           +++..++.++.+..+.+.......          +.. ++.+  .+...
T Consensus       320 ~~t~~~~~----lid~~gRR-----------pLll~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~y~~i~~~  374 (485)
T KOG0569|consen  320 LSTLVSPF----LIDRLGRR-----------PLLLISLSLMAVALLLMSIALFLS----------NSFGSWLSYLCIAAI  374 (485)
T ss_pred             HHHHHHHH----HHHhcCCc-----------HHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHHH
Confidence            33333333    33333444           245556555555544444433220          111 2222  23444


Q ss_pred             HHHHHHHHhh-hhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHH
Q 039271          484 VLVGASEVFM-YVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYF  562 (609)
Q Consensus       484 ~l~g~g~~~~-~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~  562 (609)
                      ++..++.... .|..+-+..|++|++.|+.++++..+.+++++++-......+....               +.  .+|.
T Consensus       375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~---------------g~--~~fi  437 (485)
T KOG0569|consen  375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI---------------GP--YVFI  437 (485)
T ss_pred             HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cc--hhhH
Confidence            4444443333 4666778889999999999999999999999988777776665432               11  3678


Q ss_pred             HHHHHHHHHHHHHhhhccccccccCCchhhHHHhh
Q 039271          563 LLAVLTAFDFVIYLICANWYKGINLDEDSCEKEME  597 (609)
Q Consensus       563 ~~a~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~  597 (609)
                      .+.+.+++..+..+...||+|+|+.+|+.++.+.+
T Consensus       438 lF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  438 LFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            88999999999999999999999999888776654

>PRK03699 putative transporter; Provisional

Probab=99.89  E-value=1.5e-20  Score=200.90  Aligned_cols=175  Identities=10%  Similarity=0.091  Sum_probs=145.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      +++|..+..++..++.....+.....++. +.+++|.|..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            35666777777777777766666666665 5678999999999999999999999999999999995 999999999988


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+++.+.                      ++++.+++.|++.|++.+...+...+++.|.+|+++      |+...
T Consensus        82 ~~i~~~l~~~~----------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~  133 (394)
T PRK03699         82 MILAVAGLMFS----------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRL  133 (394)
T ss_pred             HHHHHHHHHHc----------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHH
Confidence            88888877776                      567888999999999999888888999999998877      88888


Q ss_pred             HHHHHHHhhhHHHHhhhhhhccc-ccchhHHHHHHHHHHHHHHHHH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYED-SGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      +..+...++|+.++|.+.+++.. ..|||+.|++.++..++..+..
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999998887754 5799999998776655544433

>TIGR00895 2A0115 benzoate transport

Probab=99.89  E-value=4.2e-21  Score=204.09  Aligned_cols=172  Identities=14%  Similarity=0.125  Sum_probs=141.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      |+.+...++..+......+.... ..+++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+++..+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~   93 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGF-AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHH
Confidence            44444444555555555544444 44556678999999999999999999999999999999996 99999999998888


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+++.+.                      .+.+.+++.+++.|++.+...+...+++.|.+|+++      |++..++
T Consensus        94 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~  145 (398)
T TIGR00895        94 VFTLLCALA----------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGL  145 (398)
T ss_pred             HHHHHHHHc----------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhh
Confidence            877776665                      567788899999999999999999999999999887      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      .+...++|..+++.+++++.+..||++.|++.++..++..++
T Consensus       146 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  187 (398)
T TIGR00895       146 MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL  187 (398)
T ss_pred             HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence            999999999999999999999899999999886544444433

>TIGR00897 2A0118 polyol permease family

Probab=99.89  E-value=4.8e-20  Score=197.65  Aligned_cols=171  Identities=13%  Similarity=0.039  Sum_probs=140.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      +.||++....+..++...+.+...++++.|+ +++|.+..+++++.+.+.++..++.+++|+++||+ ||||++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence            4467788888888888888777778888888 56899999999999999999999999999999996 999999999998


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+++......                  ..+.+.+++.|++.|++.+...+...+.+.+.+|+++      |+++.
T Consensus        88 ~~~~~~~~~~~~~~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~  143 (402)
T TIGR00897        88 WCVGHAAFIVFGLG------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAV  143 (402)
T ss_pred             HHHHHHHHHHHhcc------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHH
Confidence            88876554321110                  1346778889999999888877777788889999888      99999


Q ss_pred             HHHHHHHhhhH-HHHhhhhhhcccccchhHHHHHHHHH
Q 039271          213 CYFYFFLNVGS-LFSNTILVYYEDSGKWTLGFLVSLAS  249 (609)
Q Consensus       213 ~~~~~~~~ig~-~~~~~i~~~l~~~~g~~~~f~~~~~~  249 (609)
                      |+++.+.++|. .++|.+++++.+..||+..++.....
T Consensus       144 g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       144 GWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99999999996 58999999998888876665554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.89  E-value=2.2e-20  Score=199.56  Aligned_cols=166  Identities=13%  Similarity=0.008  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ..+.++...++..++.......++.. .++++.+..+.+++.+.+.+...++.+++|+++||+ ||||++.++.+++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence            45566667777776555444444443 568899999999999999999999999999999996 9999999999999888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      .+++.+.                      .+.   ++.|+++|++.+...|...+++.|++|+++      |+++.++.+
T Consensus        82 ~~~~~~~----------------------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~  130 (393)
T PRK11195         82 CLLMLFG----------------------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWME  130 (393)
T ss_pred             HHHHHHH----------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence            7766554                      222   678899999999999999999999999887      999999999


Q ss_pred             HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      ...++|..+||.++|++.+. .|+..+.+.+.+.+++.+.
T Consensus       131 ~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~  169 (393)
T PRK11195        131 GSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALF  169 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999874 4777776665554444333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=8.7e-21  Score=208.91  Aligned_cols=169  Identities=15%  Similarity=0.214  Sum_probs=145.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      .+|+.+..+.+..++..+..+.....+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            345666666667777777666555444 456788999999999999999999999999999999996 999999999998


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+++.+.                      .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++..
T Consensus        95 ~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~  146 (496)
T PRK03893         95 FSVGTLACGFA----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKAS  146 (496)
T ss_pred             HHHHHHHHHHH----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            88888888776                      678889999999999999999999999999999887      89999


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAV  251 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~  251 (609)
                      ++++...++|..++|.+.+++.+.++|++.|++.++..+
T Consensus       147 ~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~  185 (496)
T PRK03893        147 GFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.89  E-value=3.1e-20  Score=197.65  Aligned_cols=156  Identities=12%  Similarity=0.075  Sum_probs=137.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      .|.++.+++..++.++....+.+.+|.|+. ++|.|..++|++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            356788888888899888888899998876 5899999999999999999999999999999996 99999999999988


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++...+...                      ++++.++++|++.|++.+...|...+.+.+..++++      |++.+++
T Consensus        83 ~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  134 (381)
T PRK03633         83 AGCAGLGLM----------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAA  134 (381)
T ss_pred             HHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence            888877776                      668889999999999999988888888888888776      8999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchh
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWT  240 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~  240 (609)
                      ++...++|..+||.+++.+.+...+.
T Consensus       135 ~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        135 YMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccch
Confidence            99999999999999999987754333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=3.7e-20  Score=197.85  Aligned_cols=172  Identities=15%  Similarity=0.078  Sum_probs=143.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      .+|.++.+.....+..+......+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            4666666666666666666655555554 4578999999999999999999999999999999996 9999999999888


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+.+...                      ++.+.+++.|++.|++.+...+....+..|.+++++      |+...+
T Consensus        84 ~~~~~~~~~~----------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  135 (394)
T PRK11652         84 ILGTLVALFA----------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANS  135 (394)
T ss_pred             HHHHHHHHHH----------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHH
Confidence            8887777665                      567889999999999988888888888899888776      888889


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  255 (609)
                      +++.+..+|..++|.+++++.+..||++.|++.++..++..+
T Consensus       136 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        136 LLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888999999987766554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.88  E-value=8e-20  Score=197.93  Aligned_cols=165  Identities=15%  Similarity=0.125  Sum_probs=126.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHH-HHHHH-----HHHHHHHhHHHHHhhhccchhHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANN-VSKWT-----GTVYMCSLIGAFLSDSYWGRYLTCA  127 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~-~~~~~-----~~~~~~~~~~G~laDr~~Grr~~~~  127 (609)
                      +++....+++..+++.+....+.... +.+.++++.+..+.+.. .+...     +...+++++.|+++||+ ||||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYA-TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence            34556666667777777766655444 46778899887775443 33222     22246789999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHH--------HHHHHHHHHHHhhcCchhhhhhhhhccCCC
Q 039271          128 VFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAA--------IFYLSIYLIAFGYGGHQPTLATFGADQFDE  199 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  199 (609)
                      .+.+++.++.++++++                      ++++        .++++|++.|++.+...+....+++|++|+
T Consensus        91 ~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  148 (434)
T PRK15075         91 VTLSIMASGTLLIAFV----------------------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP  148 (434)
T ss_pred             HHHHHHHHHHHHHHhC----------------------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence            9999999998888876                      2222        568899999999999999889999999999


Q ss_pred             CChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc--------ccccchhHHHHHHHH
Q 039271          200 SKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY--------EDSGKWTLGFLVSLA  248 (609)
Q Consensus       200 ~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l--------~~~~g~~~~f~~~~~  248 (609)
                      ++      |++..+++....++|..+++.+++.+        .+.+|||+.|++.++
T Consensus       149 ~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        149 GR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             cc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            98      99999998888888888777776654        246899999987543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.88  E-value=2e-20  Score=204.50  Aligned_cols=147  Identities=10%  Similarity=0.018  Sum_probs=127.8

Q ss_pred             hhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcc
Q 039271           86 VLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSS  165 (609)
Q Consensus        86 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (609)
                      +++.+..+.|++.+.+.+++.++.+++|+++||+ |||+++..+.++..++.++......                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6789999999999999999999999999999996 9999999999888777766544311                    


Q ss_pred             hhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccccc-chhHHHH
Q 039271          166 IFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSG-KWTLGFL  244 (609)
Q Consensus       166 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~-g~~~~f~  244 (609)
                      .+.+.+++.|+++|++.+...|....+++|++|+++      |++..++++.+.++|..++|.+++++.+.. ||++.|+
T Consensus       129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~  202 (465)
T TIGR00894       129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY  202 (465)
T ss_pred             cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence            235678899999999999999999999999999988      999999999999999999999999998884 9999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 039271          245 VSLASAVIALLSYLM  259 (609)
Q Consensus       245 ~~~~~~~~~~~~~~~  259 (609)
                      +.++..++..++++.
T Consensus       203 i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       203 VFGIVGCAWSLLWFV  217 (465)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            988776655554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.88  E-value=1.1e-19  Score=194.29  Aligned_cols=173  Identities=11%  Similarity=0.063  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHH-HHHhHHHHHhhhccchhHHHH-HHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVY-MCSLIGAFLSDSYWGRYLTCA-VFQLIFV  134 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~G~laDr~~Grr~~~~-~~~~~~~  134 (609)
                      ..+..++..++.+++.....+.++.|+.+++|.+.+++|++.+...+... ++++++|+ +||+ ||||.++ .+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence            34556666788888888888999999999999999999999877666444 55555555 9996 9998754 4444444


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhcc--chhH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSK--TLFF  212 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~  212 (609)
                      ++..+..++                      .+++.+++.+.+.+...+...|....+..|..+++.      |  +...
T Consensus        94 ~~~~~~~~~----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  145 (393)
T PRK15011         94 LACTLFAWN----------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFS  145 (393)
T ss_pred             HHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHH
Confidence            555555554                      455665544444443344667777888888665543      3  3344


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      ++.+.+.++|..+||.+++++.+.+|||..|++.++..++..+..+.
T Consensus       146 ~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        146 SFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            67888899999999999999998899999999888766655544443

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=1.3e-19  Score=194.10  Aligned_cols=162  Identities=17%  Similarity=0.216  Sum_probs=134.1

Q ss_pred             HHHHHhhHHHHHHH--HHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 039271           69 TLAFFGVGVNLVLF--LTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFL  146 (609)
Q Consensus        69 ~~~~~~~~~~~~~y--l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  146 (609)
                      +.++.....+.|.+  +.+++|.+..+++++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++...   
T Consensus        16 ~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---   91 (401)
T PRK11043         16 MLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV---   91 (401)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh---
Confidence            33333333444433  5678999999999999999999999999999999996 99999999998888887777666   


Q ss_pred             ccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHH
Q 039271          147 MIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS  226 (609)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  226 (609)
                                         .+.+.+++.|++.|++.+...+...+++.|.+|+++      +++.++..+...++|..++
T Consensus        92 -------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g  146 (401)
T PRK11043         92 -------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALA  146 (401)
T ss_pred             -------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHH
Confidence                               567888999999999988888888889999999877      7777888888889999999


Q ss_pred             hhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          227 NTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       227 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      |.+++++.+.+||++.|++.++..++..+..+.
T Consensus       147 ~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        147 PLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999899999999887776665554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.88  E-value=1.9e-20  Score=203.01  Aligned_cols=175  Identities=11%  Similarity=0.079  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .++.+++...........+... .+++++ .|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~-~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~  104 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALA-MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAV  104 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhh-hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHH
Confidence            3333333333333333333333 446665 599999999999999999999999999999996 9999999988888877


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      .+++...  +..                ..+.+.+++.|++.|++.+...+.....+.|++|+++      |++++++++
T Consensus       105 ~~~~~~~--~~~----------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~  160 (438)
T TIGR00712       105 MLLMGFV--PWA----------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWN  160 (438)
T ss_pred             HHHHhcc--ccc----------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHH
Confidence            7665543  110                1346677888999999999998988999999999998      999999999


Q ss_pred             HHHhhhHHHHhhhhhhccc-ccchhHHHHHHHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYED-SGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      ...++|+.+++.+.+.+.+ ..+||+.|++.++..++..+..+
T Consensus       161 ~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       161 CAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             HHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887775443 46899999998877666544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=1.1e-19  Score=193.52  Aligned_cols=364  Identities=10%  Similarity=0.019  Sum_probs=227.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH-HHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV-VGL  137 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~-~~~  137 (609)
                      +.+.+..++...++....+++|.|++ ++|.|..++|++.+.+.+...+++++.|.++||+ ||++.......+.. +..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            33445555555665666788999985 6899999999999999999999999999999996 98543322221111 111


Q ss_pred             H-HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          138 V-LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       138 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      + +....                      ++++.+++.|++++.+.+...|...++..+.  .++      |++.++...
T Consensus        85 ~~~~~~~----------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~  134 (382)
T TIGR00902        85 AAFSAGA----------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVR  134 (382)
T ss_pred             HHHHHhh----------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHH
Confidence            1 11122                      5688898999999988888888888876553  333      778899999


Q ss_pred             HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCc
Q 039271          217 FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANS  296 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  296 (609)
                      ...++|..++|.+++++.+.+||+..|++.++..++.++.. ..+++.   +|+++...+                    
T Consensus       135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~--------------------  190 (382)
T TIGR00902       135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIGF-LIKPTI---PPKDAIPED--------------------  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HcCCCC---CCCcccccc--------------------
Confidence            99999999999999999999999999987765433333222 222211   110000000                    


Q ss_pred             hhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhH-HHHHHHHHHHHHHHhc
Q 039271          297 DELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM-LPIWLCTIIYSVVFTQ  375 (609)
Q Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  375 (609)
                               +          .....+..                        ++...++++.. +..++....+...+..
T Consensus       191 ---------~----------~~~~~~~~------------------------~~l~~~~~~~~l~~~~l~~~~~~~~~~~  227 (382)
T TIGR00902       191 ---------E----------SQGDSAFI------------------------ALLKNPMNLRFLAAVCLIQGAHAAYYGF  227 (382)
T ss_pred             ---------c----------cccchhHH------------------------HHHcChHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0          00000000                        00011122121 1122222222222222


Q ss_pred             ccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 039271          376 MASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAG  455 (609)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  455 (609)
                      .+.++..  .+.+      ....+....+..+..++...+.+++    .+|++       +...+.++.++..+..+.+.
T Consensus       228 ~~~~l~~--~g~s------~~~~g~l~~~~~~~~i~~~~~~~~l----~~r~g-------~~~~l~~~~~~~~~~~~~~~  288 (382)
T TIGR00902       228 SAIYWQA--AGIS------ASATGLLWGIGVLAEIIIFAFSNKL----FQNCS-------ARDLLLISAIACVGRWAIIG  288 (382)
T ss_pred             HHHHHHH--CCCC------HhHHHHHHHHHHHHHHHHHHHhHHH----HhhCC-------HHHHHHHHHHHHHHHHHHHH
Confidence            2222211  1111      1122333444455555555555444    45532       44567788888888887776


Q ss_pred             HHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 039271          456 ATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMA-SISFGNYVSSLLVVM  534 (609)
Q Consensus       456 ~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~lg~~ig~~~~~~  534 (609)
                      ..+                +.+.++...+++++..+...+....++.+. |++.++++++++++ ...+|..+|+.+.|.
T Consensus       289 ~~~----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       289 AIE----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             hHh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            532                556667778999999999999999999988 99999999999874 577999999999998


Q ss_pred             hhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHH
Q 039271          535 VMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVI  574 (609)
Q Consensus       535 i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~  574 (609)
                      +.+..               + . ..|++.+++++++.++
T Consensus       352 l~~~~---------------g-~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       352 IYPTL---------------G-A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHhc---------------c-H-HHHHHHHHHHHHHHHH
Confidence            86532               1 1 2467777777766544

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.88  E-value=3.2e-20  Score=200.16  Aligned_cols=391  Identities=11%  Similarity=0.014  Sum_probs=219.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +..+.+.+..++..++++.+.++++.|+++++|.+..++|++.+++.++..+++++.|+++||+ |||+++..+..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3566666777777787778889999999999999999999999999999999999999999995 999999887665554


Q ss_pred             HHHHHHHHh-hhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          136 GLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +........ .+.                  . ....+.+..+.++..+...+.....+.++.+...+    .++..++.
T Consensus        89 ~~~~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~  145 (420)
T PRK09528         89 LFGPFFIYVFAPL------------------L-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEYGR  145 (420)
T ss_pred             HHHHHHHHHHHHH------------------H-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccchh
Confidence            433221110 000                  0 00011222222332232222222223333221111    16667788


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA  294 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  294 (609)
                      .+...++|..++|.+++++.+ .+|++.|++.++..++.++.++..+++.++++...+.                     
T Consensus       146 ~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  203 (420)
T PRK09528        146 ARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA---------------------  203 (420)
T ss_pred             hHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc---------------------
Confidence            888889999999999998876 5899999988777666555544433321111000000                     


Q ss_pred             CchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHH-HHHHHHH
Q 039271          295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCT-IIYSVVF  373 (609)
Q Consensus       295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  373 (609)
                      .     +.+      +      +..  ...+.....        +             .+.++......... ..+....
T Consensus       204 ~-----~~~------~------~~~--~~~~~~~~l--------~-------------~~~~~~l~l~~~~~~~~~~~~~  243 (420)
T PRK09528        204 L-----GAN------A------SAV--SLKDALALL--------K-------------LPKFWFLVLYVIGVACFYDVFD  243 (420)
T ss_pred             h-----hcc------c------ccc--cHHHHHHHc--------c-------------CCCeEeehHHHHHHHHHHHHHH
Confidence            0     000      0      000  000000000        0             00111111111111 1111111


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      .+.+.++..........    ....+.+..+..+...+...+.+++.    +|+++++       .+..+.++.+++++.
T Consensus       244 ~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~g~l~----dr~g~~~-------~~~~~~~l~~~~~~l  308 (420)
T PRK09528        244 QQFPNFFASFFATPEQG----TRVFGYLNSFQVFLEALIMFFAPFII----NRIGAKN-------ALLLAGTIMAVRIIG  308 (420)
T ss_pred             HHHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCcch-------hhHHHHHHHHHHHHH
Confidence            12222221110000000    01123334444444455555665554    4443332       356666667777666


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHH-HHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL-CMASISFGNYVSSLLV  532 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~lg~~ig~~~~  532 (609)
                      +++..                +.++++...++.+++.....+....++.+..|++.+++..+. +++...+|+.+++.+.
T Consensus       309 ~~~~~----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~  372 (420)
T PRK09528        309 SGFAT----------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLA  372 (420)
T ss_pred             HHhcc----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHH
Confidence            65531                344555666777877777777777888899999999988766 6777889999999999


Q ss_pred             HHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhc
Q 039271          533 VMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICA  579 (609)
Q Consensus       533 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~  579 (609)
                      +++.+..      +          +...|.+.+++.++..++.+...
T Consensus       373 G~l~~~~------G----------~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        373 GNLYDSI------G----------FQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHhh------C----------chHHHHHHHHHHHHHHHHHHHHh
Confidence            9876532      1          33467777777766665555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=2.5e-20  Score=196.62  Aligned_cols=151  Identities=13%  Similarity=0.097  Sum_probs=133.1

Q ss_pred             HHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 039271           79 LVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFI  158 (609)
Q Consensus        79 ~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (609)
                      ..+++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+++..+.++..++.+++.++               
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---------------   80 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS---------------   80 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence            34577888999999999999999999999999999999996 99999999999988888888877               


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHh-hhhhhccccc
Q 039271          159 SCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSN-TILVYYEDSG  237 (609)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~-~i~~~l~~~~  237 (609)
                             .+.+.+++.|++.|++.+...+...+++.|++|+++      |++..++.+.+.++|..++| .+++.+.+..
T Consensus        81 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  147 (379)
T TIGR00881        81 -------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELY  147 (379)
T ss_pred             -------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence                   568889999999999999999999999999999888      99999999999999999999 5777777778


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q 039271          238 KWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       238 g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      +|++.|++.++..++..+..+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881       148 SWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             CchhHHHHHHHHHHHHHHHHh
Confidence            999999888766655444443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=1.9e-19  Score=190.84  Aligned_cols=155  Identities=13%  Similarity=0.113  Sum_probs=136.0

Q ss_pred             hhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 039271           74 GVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGC  153 (609)
Q Consensus        74 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (609)
                      ...+.++.+. +++|.+..+++++.+.+.++..++.+++|+++||+ |||+++..+.++..++..++...          
T Consensus         9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~----------   76 (377)
T PRK11102          9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA----------   76 (377)
T ss_pred             HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH----------
Confidence            3446677665 46999999999999999999999999999999996 99999999999988888887776          


Q ss_pred             CCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          154 GDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                                  .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+...++|..++|.+++.+
T Consensus        77 ------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l  138 (377)
T PRK11102         77 ------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWL  138 (377)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        567888999999999999999999999999999888      99999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHH
Q 039271          234 EDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       234 ~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      .+..+|++.|++.++..++..+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        139 LVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHH
Confidence            9888999999988776666554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=3.2e-21  Score=198.71  Aligned_cols=180  Identities=17%  Similarity=0.136  Sum_probs=159.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           53 GGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      ..++.+.++++.+.++...-|.+...+ .-.++.+|++.+..|++.+.+.+...++.|++|+|+||| .|++++.+|..+
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i  107 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI  107 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence            345667778888888888888765533 346778999999999999999999999999999999997 999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      +.++.++..++                      ..+|++.+.|.+.|+|.+.+.|+.+++++|.||.++      |++.+
T Consensus       108 W~~Av~~~~fs----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~  159 (493)
T KOG1330|consen  108 WTLAVFASGFS----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVL  159 (493)
T ss_pred             HHHHHHHHHHH----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHH
Confidence            99999988888                      779999999999999999999999999999999998      99999


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      +++|+++++|+++|.++++.+....+ |||.|++.+++.++..++.++..+
T Consensus       160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            99999999999999999999988766 999999998887776665544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.86  E-value=1.2e-18  Score=186.09  Aligned_cols=169  Identities=15%  Similarity=0.100  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      ....+..+....++....+.+|. +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.+..+.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence            33444445555555555555654 4567999999999999999999999999999999995 999999999988888887


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ++...                      .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++..++.+..
T Consensus        84 ~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~  135 (392)
T PRK10473         84 LCSLA----------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGI  135 (392)
T ss_pred             HHHHh----------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence            77665                      557778889999999999989999999999999888      99999999999


Q ss_pred             HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 039271          219 LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      .++|..++|.+++.+.+..||++.|++.++..++..++.
T Consensus       136 ~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        136 TCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888899999998876665555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.86  E-value=1.3e-18  Score=191.20  Aligned_cols=180  Identities=14%  Similarity=0.091  Sum_probs=140.9

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc-----chhHH
Q 039271           51 NKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYW-----GRYLT  125 (609)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-----Grr~~  125 (609)
                      +...+|+.+.++...+...+..+...+.++.|+++ .|.+.++++..... ... .++.++.|.++|| +     ||||.
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~   82 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDR-YTPPFLGRRRG   82 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHc-ccccCCCCchH
Confidence            34456777778888888888888888888988764 69999999986222 222 3688999999999 6     99886


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhh
Q 039271          126 -CAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKE  204 (609)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  204 (609)
                       +..+.+...++...+++. .|                  ..+++.+.+.+++.+++.+...+...++..|++|+++   
T Consensus        83 ~ll~~~i~~~~~~~~~a~~-~~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~---  140 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFL-EP------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE---  140 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CC------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh---
Confidence             556666555665555554 11                  1457788888999999999999999999999999888   


Q ss_pred             hhccchhHHHHHHHHhhhHHHHhhhhhhccc-ccchhHHHHHHHHHHHHHHHHHHh
Q 039271          205 RQSKTLFFCYFYFFLNVGSLFSNTILVYYED-SGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       205 ~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                         |+++.++...+.++|..+++.+++++.+ ..|||..|++.++..++..+..+.
T Consensus       141 ---rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        141 ---RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence               9999999999999999999999999988 579999999988776665554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.86  E-value=8e-19  Score=187.73  Aligned_cols=387  Identities=11%  Similarity=0.010  Sum_probs=226.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.+|.+....++...++..+.++++.|+++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+.++.+.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            3567777778888888888889999999999999999999999999999999999999999996 999999887766554


Q ss_pred             HHHHHHHHh-hhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          136 GLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +........ .+...               ......+++.+++.+++.+...+....+..|..+  +      ++..++.
T Consensus        81 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~  137 (396)
T TIGR00882        81 LFAPFFIYVFGPLLQ---------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGK  137 (396)
T ss_pred             HHHHHHHHHhhhHHH---------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccch
Confidence            433222110 11000               0123445666778888888888877777666422  2      3345677


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA  294 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  294 (609)
                      .....++|..+||.+++.+.+ .+|++.|++.++..++..++.+...++.    |+++...+             . .  
T Consensus       138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------------~-~--  196 (396)
T TIGR00882       138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVAN-------------A-L--  196 (396)
T ss_pred             hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhhc-------------c-c--
Confidence            777889999999999998865 6999999988776666554444332221    11000000             0 0  


Q ss_pred             CchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHH-HHHHHHHHHH
Q 039271          295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIW-LCTIIYSVVF  373 (609)
Q Consensus       295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  373 (609)
                            + .  ++        +..+..+..+..                       ++ |.++...... .....+....
T Consensus       197 ------~-~--~~--------~~~~~~~~~~~l-----------------------~~-~~~~~~~l~~~~~~~~~~~~~  235 (396)
T TIGR00882       197 ------G-A--NA--------SAFSLKLALELF-----------------------RQ-RKFWMFVLYVVGVACVYDVFD  235 (396)
T ss_pred             ------c-c--cc--------CCCCHHHHHHHH-----------------------cC-CcHHHHHHHHHHHHHHHHHHH
Confidence                  0 0  00        000000000000                       00 1111111111 1111111111


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      .+.+.++..........    ....+....+..+...+.....+++    .+|+++|       ..+.++.++.++++..
T Consensus       236 ~~~~~y~~~~~~~~~~~----~~~~g~~~~~~~i~~~~~~~~~g~l----~~r~g~~-------~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       236 QQFANFFTSFFATPQQG----TRVFGYVTTMGELLNALIMFCAPLI----INRIGAK-------NALLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHHHHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccc-------hhHHHHHHHHHHHHHH
Confidence            11122211100000000    0011223333444444444555444    4444433       2356666666666655


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHH-HHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL-CMASISFGNYVSSLLV  532 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~lg~~ig~~~~  532 (609)
                      +...                .+.++++...++.+++..........+..+..|++.+++..+. ++....+|+.+++.+.
T Consensus       301 ~~~~----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       301 SSFA----------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             HHhc----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence            4432                2445556667778877766666666778888899999887776 5678899999999999


Q ss_pred             HHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 039271          533 VMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIY  575 (609)
Q Consensus       533 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~  575 (609)
                      +.+.+..                ++...|.+.+++.++..++-
T Consensus       365 G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       365 GNMYDSI----------------GFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHhc----------------ccHHHHHHHHHHHHHHHHHH
Confidence            9876532                23446777777666665544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.86  E-value=2.8e-21  Score=204.93  Aligned_cols=364  Identities=32%  Similarity=0.526  Sum_probs=234.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCC-
Q 039271          123 YLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESK-  201 (609)
Q Consensus       123 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-  201 (609)
                      .|+++++.+++.+|++++.+++.|...             .++.+...++++.+++++|.|+..|+..++.+|++++++ 
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~   67 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD   67 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch
Confidence            378999999999999998888766522             123456789999999999999999999999999999873 


Q ss_pred             hhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceec-CCCCCChhH-HHH
Q 039271          202 PKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYV-KPCGNPLPR-VAQ  279 (609)
Q Consensus       202 ~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~  279 (609)
                      ++    |.+++.++|++.|+|+.+++.+.+++.+++||.+.|.++++.++++++.++..++++.++ +|.+++..+ ...
T Consensus        68 ~~----~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~  143 (372)
T PF00854_consen   68 SR----RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKL  143 (372)
T ss_dssp             TH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHH
T ss_pred             hh----hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHH
Confidence            32    778999999999999999999999999999999999999999999999999999988887 667777666 344


Q ss_pred             HHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcc-cchhhHHHHHHHHh
Q 039271          280 VFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKL-CTVTQVEEAKCVLK  358 (609)
Q Consensus       280 ~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  358 (609)
                      +...+.+++....|....++....+..+    ......... . .+........     ...|.. +..+++++.+.+.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~k~~~~  212 (372)
T PF00854_consen  144 VLVAAFKKRKLAVPKGSSWLDWALFQYS----ERSIFGIIV-F-IRAAVIFFPE-----IFFWALFCQVQRVEELKALIR  212 (372)
T ss_dssp             HHHHHHHHHCCCH-HHHHHHHHHHHHHC----CCCCCCCCC-H-HHHHHHHCCC-----HHHHTTTSSTTTHHHCCHHHC
T ss_pred             HHHHHHHHhhcccccchHHHHHhhhhhh----hhhhhhhhh-h-ccchhhhhhh-----hhhcccCCccceeeeeeeeee
Confidence            4445555544444333333322221100    000000000 0 0000000000     000110 12334455566666


Q ss_pred             HHHHHHHHHHHHHHHhcccceeeEecccccccccc-cccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChh
Q 039271          359 MLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGE-FRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSEL  437 (609)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  437 (609)
                      .+..+...+.++..+.+.......+...++....+ +..++..+.+++.+.++++.++.+++++|+.++ .+   ..++.
T Consensus       213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~~~~  288 (372)
T PF00854_consen  213 FLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QPSPP  288 (372)
T ss_dssp             HHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------H
T ss_pred             ccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cchhh
Confidence            66666667777777777776666666666666666 889999999999999999999999999998882 22   24588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH
Q 039271          438 QRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC  517 (609)
Q Consensus       438 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~  517 (609)
                      .++.+|++++.++++....++..+....+..|   ..+.+|.++.+++..++|....+...+..+|.+|++..+..+|++
T Consensus       289 ~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~  365 (372)
T PF00854_consen  289 QKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIW  365 (372)
T ss_dssp             HHHHHH-HHHHHHHHTTTHHHH---HH----T---T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHH
Confidence            89999999999999988877764444444333   334477789999999999999998888777777777777666666


Q ss_pred             HHHH
Q 039271          518 MASI  521 (609)
Q Consensus       518 ~~~~  521 (609)
                      ....
T Consensus       366 ~~~~  369 (372)
T PF00854_consen  366 FALS  369 (372)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.85  E-value=4.8e-18  Score=182.97  Aligned_cols=386  Identities=11%  Similarity=0.048  Sum_probs=220.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccch-hHHHHHHHHHHHHHHHH
Q 039271           61 LLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGR-YLTCAVFQLIFVVGLVL  139 (609)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~~~~~~  139 (609)
                      +.+..++...++-...++++.|+.+++|++..+.|++.+.+.++..+++++.|+++||+ || |+++..+.++..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            44455566666666679999999999999999999999999999999999999999995 65 77777777666565555


Q ss_pred             HHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccC--------CCCChhhhhccchh
Q 039271          140 LSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQF--------DESKPKERQSKTLF  211 (609)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~~~  211 (609)
                      ..+.                      ++++.+++.+++.+++.+...+...++..+..        ....      |.+.
T Consensus        86 ~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~  137 (418)
T TIGR00889        86 AAQV----------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRV  137 (418)
T ss_pred             HHHh----------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceee
Confidence            5544                      45777788888888877776666555432221        1111      3344


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccc
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVV  291 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      +|      .+|.++||.+++.+.....|. +|++.++..++..++.+. .++.++.+.+. . .+..+            
T Consensus       138 ~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~-~-~~~~~------------  195 (418)
T TIGR00889       138 MG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTA-K-MSIKV------------  195 (418)
T ss_pred             eh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCcccc-c-cCHHH------------
Confidence            43      478888888888774333344 455555544444433322 22211100000 0 00000            


Q ss_pred             cCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhH-HHHHHHHHHHH
Q 039271          292 VPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM-LPIWLCTIIYS  370 (609)
Q Consensus       292 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  370 (609)
                                                ....+..+                        ..+.+++... +..++......
T Consensus       196 --------------------------~~~~~~~~------------------------~~k~~~~~~~~~~~~~~~~~~~  225 (418)
T TIGR00889       196 --------------------------MLGLDAFI------------------------LFKNKRMAIFFFFSMLLGAPLQ  225 (418)
T ss_pred             --------------------------HhhhhHHH------------------------HhcCCCeeeHHHHHHHHHhHHH
Confidence                                      00000000                        0000010011 11111111111


Q ss_pred             HHHhcccceeeEeccccccccc-cc-ccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHH
Q 039271          371 VVFTQMASLFVEQGDVMNSHIG-EF-RLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGM  448 (609)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~  448 (609)
                      ..+.....+....  +.+.... ++ ....+....+..+..++...+.+++.++.++|           ..+..+.++..
T Consensus       226 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~  292 (418)
T TIGR00889       226 ITNIFGNGFLHEF--GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWA  292 (418)
T ss_pred             HHHHhHHHHHHHh--cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHH
Confidence            1111111111110  0000000 00 01123344455555555566666654333332           34677777777


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHH-HHHHHHHHH
Q 039271          449 LAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCM-ASISFGNYV  527 (609)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~lg~~i  527 (609)
                      +++..+....            +.....+.++...++.+++++...+....++.+.+|++.|++++|+.+ +.+.+|+.+
T Consensus       293 v~~~l~~~~~------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       293 LRFGFFAYGD------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHHHHHHcC------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            7766655421            011123344556788888888888888899999999999999999997 568899999


Q ss_pred             HHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccc
Q 039271          528 SSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWY  582 (609)
Q Consensus       528 g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~  582 (609)
                      |+.+.|.+.+..+..+          ..++...|.+.+++.++..++++++.++.
T Consensus       361 Gp~l~G~l~~~~g~~~----------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       361 GYILSGVMVEKMFAYG----------TFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHhcccc----------CCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999998875431110          11345567788888888887777777654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.85  E-value=2.1e-18  Score=188.86  Aligned_cols=357  Identities=16%  Similarity=0.117  Sum_probs=235.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .+..+...+...+++.+....-++-+.. ++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+-++..+.
T Consensus        11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~   88 (524)
T PF05977_consen   11 NFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV   88 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence            3444445555556655544444443333 4667889999999999999999999999999996 9999999999888766


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      .+.+++.....                 ..+.+.+++..++.|++.+...|+..+++.|+.|+++      ...+.++.+
T Consensus        89 ~~~L~~l~~~~-----------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s  145 (524)
T PF05977_consen   89 ALLLAVLAFFG-----------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNS  145 (524)
T ss_pred             HHHHHHHHHhC-----------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHH
Confidence            66555543211                 1457888888999999999999999999999999988      888999999


Q ss_pred             HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCc
Q 039271          217 FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANS  296 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  296 (609)
                      ...|+...+||.++|.+....|..+.|.+.+++.++.++++...++..+.   +..+.+...+.+...++.         
T Consensus       146 ~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~G~ry---------  213 (524)
T PF05977_consen  146 ISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALREGLRY---------  213 (524)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHHHHHH---------
Confidence            99999999999999999988899999999888777766555444332111   111111111111000000         


Q ss_pred             hhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHH-HHHHHHHHHHHHhc
Q 039271          297 DELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLP-IWLCTIIYSVVFTQ  375 (609)
Q Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  375 (609)
                                                                           +...+.+...+. .+++.... ..+..
T Consensus       214 -----------------------------------------------------v~~~~~l~~~l~~~~~~~l~~-~a~~a  239 (524)
T PF05977_consen  214 -----------------------------------------------------VRSSPPLRSVLLRSFLFNLFA-SAVWA  239 (524)
T ss_pred             -----------------------------------------------------HhcchHHHHHHHHHHHHHHhh-hHHHH
Confidence                                                                 000011111111 11111111 11111


Q ss_pred             ccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 039271          376 MASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAG  455 (609)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  455 (609)
                      ..+.+..+      .+++-...-+.+.+..+++.++.+.+..++    .+|+.       ....+..+.++.+++++.++
T Consensus       240 LlPl~a~~------~l~~~a~~yGll~a~~gvGai~Gal~~~~l----~~~~~-------~~~lv~~~~~~~a~~~~~la  302 (524)
T PF05977_consen  240 LLPLFARD------VLGGGASGYGLLLAAFGVGAILGALLLPRL----RRRLS-------SRRLVLLASLLFALALLLLA  302 (524)
T ss_pred             hhhHHHHH------HhCCcHHHHHHHHHHHHHHHHHHHHHHHHh----hcccC-------cchhhHHHHHHHHHHHHHHh
Confidence            11111111      111112223445556666666666665543    33322       22345667777777777776


Q ss_pred             HHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039271          456 ATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMV  535 (609)
Q Consensus       456 ~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i  535 (609)
                      +.                .+.+..++..++.|++.....+..++.+.+..|+++||++.|++++....+..+|+++.|.+
T Consensus       303 l~----------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l  366 (524)
T PF05977_consen  303 LS----------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL  366 (524)
T ss_pred             cc----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            63                25556667778889999988899999999999999999999999999999999999999987


Q ss_pred             hh
Q 039271          536 MG  537 (609)
Q Consensus       536 ~~  537 (609)
                      .+
T Consensus       367 a~  368 (524)
T PF05977_consen  367 AD  368 (524)
T ss_pred             HH
Confidence            65

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.85  E-value=1.2e-18  Score=211.19  Aligned_cols=359  Identities=12%  Similarity=0.016  Sum_probs=214.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCch--hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQEN--ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      +.+..+++..++.++...+....+..++.+.++.+.  ...+++.+++.+...++.+++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            455555666666666655555555666665666543  3468889999999999999999999996 9999999988776


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      +++.++..++..                   ..+++.++++|++.|++.+...+...++++|++|+++      |+++++
T Consensus        88 ~~~~~~~~~~~~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~  142 (1146)
T PRK08633         88 VGLTLLIVLAYY-------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANG  142 (1146)
T ss_pred             HHHHHHHHHHHH-------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhh
Confidence            666555444311                   1457889999999999999999999999999999988      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccc--------c-chhHHHHHHHHHH-HHHHHHHHhcCCcceecCCCCCChhHHHHHHHH
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDS--------G-KWTLGFLVSLASA-VIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIA  283 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~--------~-g~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (609)
                      ++..+.++|.++|+.+++++.+.        + +|++.+.+.++.. ++++++.+.. ++.+...+......        
T Consensus       143 ~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------  213 (1146)
T PRK08633        143 LLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRL-PKVPAAAPEVFDKK--------  213 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcC-cCCCCCCccccccc--------
Confidence            99999999999999999998765        2 3444443333222 2222222222 22111100000000        


Q ss_pred             HHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHH-HH
Q 039271          284 AARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKML-PI  362 (609)
Q Consensus       284 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  362 (609)
                                                .      ........+.               ++     .+...+.+...+ ..
T Consensus       214 --------------------------~------~~~~~~~~~~---------------~~-----~l~~~~~~~~~~~~~  241 (1146)
T PRK08633        214 --------------------------K------YLFPKLLWRN---------------LK-----LLRSDRVLWLAIIGL  241 (1146)
T ss_pred             --------------------------c------cccHHHHHHH---------------HH-----HHhcCcHHHHHHHHH
Confidence                                      0      0000000000               00     000001111111 11


Q ss_pred             HHHHHHHHHHHhcccceeeEeccccccccccccc-CcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHH
Q 039271          363 WLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRL-PAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMG  441 (609)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  441 (609)
                      .+.....+.....++.++.. ..+.+      .. ..+.+.....++.++...+.+++    .+|+.++       ..+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~-~~g~s------~~~~~g~~~~~~~ig~~~g~~~~g~l----~~r~~~~-------~~~~  303 (1146)
T PRK08633        242 SYFWFISQLAQANFPAYAKE-VLGLD------NTFQVQYLLAASAIGIGIGSLLAGRL----SGRHIEL-------GLVP  303 (1146)
T ss_pred             HHHHHHHHHHHHhhHHHHHH-HhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHH----hCCceEc-------cchh
Confidence            11111111111111111111 00000      11 22334444445555555555554    4443322       2355


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHH
Q 039271          442 IGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASI  521 (609)
Q Consensus       442 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~  521 (609)
                      ++.++++++++++.+.                .+.+++++..++.+++.+...++.++++.+.+|++.||+++|+.++..
T Consensus       304 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~  367 (1146)
T PRK08633        304 LGALGLALSLFLLPTA----------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQ  367 (1146)
T ss_pred             HHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHH
Confidence            6666666666666543                144556666788888888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 039271          522 SFGNYVSSLLVVMV  535 (609)
Q Consensus       522 ~lg~~ig~~~~~~i  535 (609)
                      .+|..+++.+.+.+
T Consensus       368 ~lg~~~~~~~~~~l  381 (1146)
T PRK08633        368 NVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988877766654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.85  E-value=3.1e-18  Score=185.41  Aligned_cols=354  Identities=14%  Similarity=0.106  Sum_probs=212.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhH-HHHHHHHHHHHHHHHHH
Q 039271           66 GLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY---WGRYL-TCAVFQLIFVVGLVLLS  141 (609)
Q Consensus        66 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~~~~~~~  141 (609)
                      +..++.+..+.++++.|+++++|+++.++|++.++..+...+..|+.|+++||.   +|||| .++.+.+...++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            445555666778899999999999999999999999999999999999999983   37755 56667677666666555


Q ss_pred             HHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCC-CChhhhhccchhHHHHHHHHh
Q 039271          142 VLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDE-SKPKERQSKTLFFCYFYFFLN  220 (609)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~  220 (609)
                      ..  |...              .......+.+.+++.+++.+....+..++..|..++ ++      |++..++.+...+
T Consensus        89 ~~--~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~~  146 (437)
T TIGR00792        89 TT--PDFS--------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGAT  146 (437)
T ss_pred             hC--CCCC--------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHHH
Confidence            43  2210              012245566677778888888888888899998754 44      8888888888888


Q ss_pred             hhHHHHhhhhhhcc-------cccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccC
Q 039271          221 VGSLFSNTILVYYE-------DSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVP  293 (609)
Q Consensus       221 ig~~~~~~i~~~l~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  293 (609)
                      +|+.+++.+.+.+.       +..+|++.+++.+++.++..+..+...++.+++.+..++                    
T Consensus       147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~--------------------  206 (437)
T TIGR00792       147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE--------------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc--------------------
Confidence            88877766654443       246899998888776655554443322221100000000                    


Q ss_pred             CCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 039271          294 ANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVF  373 (609)
Q Consensus       294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (609)
                                               ++.+..+..                    +.+...|.+.......+.....+...
T Consensus       207 -------------------------~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~~~~~~~~~~  241 (437)
T TIGR00792       207 -------------------------KKLSLKQIF--------------------KALFKNDQLLILCLAYLFYNLAFNIK  241 (437)
T ss_pred             -------------------------cCCCHHHHH--------------------HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence                                     000000000                    00001111111111111111111111


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      .....++.....  ..     ......+..+..+..++..++..++    .+|+++|       ..+.++.++.+++++.
T Consensus       242 ~~~~~~~~~~~~--~~-----~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g~~-------~~~~~~~~~~~~~~~~  303 (437)
T TIGR00792       242 NGVQVYYFTYVL--GD-----PELFSYMGSIAIVAGLIGVLLFPRL----VKKFGRK-------ILFAGGILLMVLGYLI  303 (437)
T ss_pred             cchhheeEeeec--CC-----hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHH
Confidence            122222222111  10     1112233344455566666666665    3444322       2456666666666665


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCC-------cchhHHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAP-------DGIKSFGSSLCMASISFGNY  526 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~lg~~  526 (609)
                      +.+.               ..+.+..+...++.+++.+...+..++++.+..|       ++.+|.+.|++++...+|..
T Consensus       304 ~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~  368 (437)
T TIGR00792       304 FFFA---------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA  368 (437)
T ss_pred             HHHc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH
Confidence            5442               1133444555667788888888888888877764       56789999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 039271          527 VSSLLVVMVMGIT  539 (609)
Q Consensus       527 ig~~~~~~i~~~~  539 (609)
                      +++.+.+.+.+..
T Consensus       369 lg~~i~g~ll~~~  381 (437)
T TIGR00792       369 LAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999887765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10133 L-fucose transporter; Provisional

Probab=99.85  E-value=3.8e-18  Score=184.82  Aligned_cols=152  Identities=13%  Similarity=0.056  Sum_probs=121.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      ...+..+.+..+...+........+|. +++++|.+..+.++..+.+.++..++.++.|+++||+ ||||++..+.+++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~  102 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            344555555555555555555555554 5889999999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+++.... .                  .++++.++++|+++|+|.+...+..++++.|..|+++      |....+.
T Consensus       103 ~~~~l~~~~~-~------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~  157 (438)
T PRK10133        103 LGAALFWPAA-E------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNL  157 (438)
T ss_pred             HHHHHHHHHH-h------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHH
Confidence            9887754221 0                  1568889999999999999999999999998766554      5556788


Q ss_pred             HHHHHhhhHHHHhhhhhhc
Q 039271          215 FYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l  233 (609)
                      ++....+|..+||.+++.+
T Consensus       158 ~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        158 AQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888889999998887654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.85  E-value=6.1e-19  Score=213.36  Aligned_cols=338  Identities=11%  Similarity=-0.020  Sum_probs=197.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHH
Q 039271           92 ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIF  171 (609)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (609)
                      ...++..+++.+...++.+++|+++||+ |||+++.......++...+..... .                  ..+++.+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~-~------------------~~s~~~l  111 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGF-H------------------LNSVPLL  111 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHH-H------------------HhhHHHH
Confidence            4467888899999999999999999996 999986442222222111111110 0                  1468899


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHH
Q 039271          172 YLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAV  251 (609)
Q Consensus       172 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~  251 (609)
                      +++|+++|++.++..|+..+++.|++|+++      |+++.++.+.+.++|.++||.++|++.+..+|++.|+..++..+
T Consensus       112 ~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~  185 (1140)
T PRK06814        112 FAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAV  185 (1140)
T ss_pred             HHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999988      99999999999999999999999999998999999855555555


Q ss_pred             HHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhccc
Q 039271          252 IALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATIT  331 (609)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (609)
                      +++++.+..++..+.+++.... ....+                                          +..+.     
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------------------------------~~~~~-----  217 (1140)
T PRK06814        186 LGWLASLFIPKTGNAAPDLKID-RNIIR------------------------------------------STITL-----  217 (1140)
T ss_pred             HHHHHHhhCCCCCCCCCCCeec-cchHH------------------------------------------HHHHH-----
Confidence            5444443332211100000000 00000                                          00000     


Q ss_pred             ccCCCCCCCCCcccchhhHHHHHHHHhHH-HHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccchhHHHHH
Q 039271          332 DNDLAGPKNPWKLCTVTQVEEAKCVLKML-PIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVL  410 (609)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (609)
                                ++     .+...+.++... ..++....+.....+.+.+... ..+.+      ....+.+.....++.+
T Consensus       218 ----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~------~~~~g~~~~~~~~g~~  275 (1140)
T PRK06814        218 ----------LK-----YAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE-TLGGD------ENVATLFLAVFSVGVA  275 (1140)
T ss_pred             ----------HH-----HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HcCCc------hHHHHHHHHHHHHHHH
Confidence                      00     000011111111 1111122222222222222211 00111      1223445555666666


Q ss_pred             HHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH-HhhhhccCCC---CCcccchhHHHHHHHHHH
Q 039271          411 ICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATE-IQRLKYISPG---EKASSLSIFWQIPQYVLV  486 (609)
Q Consensus       411 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~---g~~~~~~~~~~i~~~~l~  486 (609)
                      +...+.+++.    +|...+       ..+..+.++.++..+.+.+.. ....+...-.   +-....+.+.+++.+++.
T Consensus       276 ig~~~~g~l~----~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (1140)
T PRK06814        276 VGSFLASKLS----EGRITL-------LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGL  344 (1140)
T ss_pred             HHHHHHHHHh----CCceee-------eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHH
Confidence            6666666653    222111       112333333333333222210 0000000000   000012445566777888


Q ss_pred             HHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039271          487 GASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVM  536 (609)
Q Consensus       487 g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~  536 (609)
                      |++.+...++..+++.+.+|++.+|+++|+.++.+.++..+++++.+.+.
T Consensus       345 g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        345 AAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888765

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.5e-19  Score=194.69  Aligned_cols=377  Identities=12%  Similarity=0.104  Sum_probs=245.5

Q ss_pred             hhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcc
Q 039271           86 VLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSS  165 (609)
Q Consensus        86 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (609)
                      ++..+..+-+++.+.+..++.++++++|+++||+ |-|+++.++.++.+++.++...+..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            5778889999999999999999999999999996 9999999999999999988887731                    


Q ss_pred             hhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc-cchhHHHH
Q 039271          166 IFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS-GKWTLGFL  244 (609)
Q Consensus       166 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~-~g~~~~f~  244 (609)
                      .+.+.+++.|+++|++.|...|+...+.+.+.|+++      |++..++.+.+..+|.+++..++|++.+. .||+++|+
T Consensus       126 ~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY  199 (466)
T KOG2532|consen  126 IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFY  199 (466)
T ss_pred             hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHH
Confidence            234577999999999999999999999999999999      99999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHH
Q 039271          245 VSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFL  324 (609)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  324 (609)
                      +.++..++-.++++......+.++|.-                       +++++...++....++...           
T Consensus       200 ~~g~~g~i~~~~w~~~~~d~P~~h~~i-----------------------s~~El~~I~~~k~~~~~~~-----------  245 (466)
T KOG2532|consen  200 VFGIVGLIWFILWFLFYSDSPSKHPNI-----------------------SEKELKYIEKGKSEAHVKK-----------  245 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccCCCC-----------------------CHHHHHHHHhcccccccCC-----------
Confidence            998887776666554433222222211                       0111111111000000000           


Q ss_pred             hhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccch
Q 039271          325 DKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAF  404 (609)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (609)
                                  ....||+..-+    +...+...+..+.....++....+.++++.. ..+++      ...+++..++
T Consensus       246 ------------~~~vP~~~i~t----s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~------v~~~G~~sal  302 (466)
T KOG2532|consen  246 ------------KPPVPYKAILT----SPPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFD------VRETGFLSAL  302 (466)
T ss_pred             ------------CCCCCHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCC------hhhhhHHHHH
Confidence                        01345632111    0111111222233333444444455554432 12222      3356777888


Q ss_pred             hHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHH
Q 039271          405 DICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRM--GIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQ  482 (609)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~  482 (609)
                      ..+...+...+.+.+.|++.+| .-..   ....++  .++....++.++.+++..              ..+. +..+.
T Consensus       303 P~l~~~~~k~~~g~lsD~l~~~-~ls~---t~~rkifn~i~~~~~ai~l~~l~~~~--------------~~~~-~~a~~  363 (466)
T KOG2532|consen  303 PFLAMAIVKFVAGQLSDRLTFR-ILSE---TTVRKIFNTIAFGGPAVFLLVLAFTS--------------DEHR-LLAVI  363 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-cCch---HhHHHHHHhHHHHHHHHHHHeeeecC--------------CCcc-hHHHH
Confidence            8888888888888877777665 2211   122233  455666666666666642              1122 22222


Q ss_pred             HHHHHHHHHh-hhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHH
Q 039271          483 YVLVGASEVF-MYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFY  561 (609)
Q Consensus       483 ~~l~g~g~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f  561 (609)
                      ++..+++... ..++.+.-..+.+| ++-+..+|+.|+...++++++|.+++.+.. .           + +...+...|
T Consensus       364 ~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-----------~-t~~eW~~VF  429 (466)
T KOG2532|consen  364 LLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D-----------N-TREEWRIVF  429 (466)
T ss_pred             HHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C-----------C-CHHHHHHHH
Confidence            2223233222 22333222223344 669999999999999999999999986642 1           1 223456689


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 039271          562 FLLAVLTAFDFVIYLICA  579 (609)
Q Consensus       562 ~~~a~~~~v~~v~~~~~~  579 (609)
                      ++.+++.+++.++|.++.
T Consensus       430 ~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  430 LIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHhchheeEee
Confidence            999999999988877665

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.84  E-value=2.3e-19  Score=189.18  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ..+..++..+......+...+++|.|+++++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            345566666777777777778888789999999999999999999999999999999999996 9999999999999998


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcch-hHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSI-FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      .+++.+.                      . +.+.+++.|++.|++.+. .+...++++|++|+++      |++..+++
T Consensus        81 ~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~  131 (366)
T TIGR00886        81 CLWAGLA----------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLA  131 (366)
T ss_pred             HHHHHHH----------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHH
Confidence            8888776                      5 688899999999998665 4567889999999888      99999998


Q ss_pred             HHHHhhhHHHHhhhhhhccc----------ccchhHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYED----------SGKWTLGFLV  245 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~----------~~g~~~~f~~  245 (609)
                      ....++|..+++.+++.+..          ..+|++.|++
T Consensus       132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            88888888888777765543          2489999844

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.84  E-value=2.2e-18  Score=184.55  Aligned_cols=178  Identities=11%  Similarity=-0.015  Sum_probs=129.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTR-VLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      |.++...+.........+ ..+.+...+.+ ++|+|.++.+++.+++.+.+.++.++.|++.||+ |.|+++..+.++..
T Consensus        34 r~l~~s~~~f~~~F~~w~-~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWM-LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            555555554444444444 33444455544 7999999999999999999999999999999996 99999999999888


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +..++..+... +                ..++++.+++.|++.|++ +...+.....++++||+++      ||++.|+
T Consensus       112 i~~~~~~~a~~-~----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi  167 (462)
T PRK15034        112 IPCVWLGIAVQ-N----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGI  167 (462)
T ss_pred             HHHHHHHHHHc-c----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHH
Confidence            88776665410 0                014688999999999998 6678889999999999998      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcc-----c-------------ccchhHHHHHHHHHHHHHHHHHHh
Q 039271          215 FYFFLNVGSLFSNTILVYYE-----D-------------SGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~-----~-------------~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +....|+|..+++.+.+.+.     .             ..+|+.++++..+..+++.+..++
T Consensus       168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777777776655554322     1             234676666666555555444444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.84  E-value=5e-18  Score=180.74  Aligned_cols=336  Identities=10%  Similarity=0.026  Sum_probs=203.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH----HHHHHHHHHHHHHHHH
Q 039271           65 QGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYL----TCAVFQLIFVVGLVLL  140 (609)
Q Consensus        65 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~----~~~~~~~~~~~~~~~~  140 (609)
                      .++...++..+.+++|.|++ ++|.|..++|++.+++.+...++.++.|.++||+ |||+    .+.....+   .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~---~~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLL---FAVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHH---HHHHH
Confidence            34444555667788999985 5899999999999999999999999999999996 9843    22222111   11111


Q ss_pred             HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHh
Q 039271          141 SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLN  220 (609)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  220 (609)
                      ...                     .++.+.+++.|++.+++.+...|...++..++  .++      |++.++......+
T Consensus        88 ~~~---------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~  138 (382)
T PRK11128         88 WFG---------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGS  138 (382)
T ss_pred             HHh---------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHH
Confidence            111                     15588888999999999999999888887776  233      6677888888889


Q ss_pred             hhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhh
Q 039271          221 VGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELY  300 (609)
Q Consensus       221 ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  300 (609)
                      +|..+||.+++++.+++|||..|++.++..++..+.... .++   .+|.+++.++                +       
T Consensus       139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~----------------~-------  191 (382)
T PRK11128        139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLL-RPT---IMPQGESRQQ----------------E-------  191 (382)
T ss_pred             HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHc-cCC---CCCccccccc----------------c-------
Confidence            999999999999999999999998877654444333322 221   1111100000                0       


Q ss_pred             hhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHH-HHHHHHHHHHHHhcccce
Q 039271          301 EVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLP-IWLCTIIYSVVFTQMASL  379 (609)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  379 (609)
                                      .+...++.                        +..+.+.++.... .++....+...+...+.+
T Consensus       192 ----------------~~~~~~~~------------------------~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  231 (382)
T PRK11128        192 ----------------SAGWPAWK------------------------ALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIY  231 (382)
T ss_pred             ----------------ccccchHH------------------------HHHcChhHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence                            00000000                        0011112221111 111122221222222222


Q ss_pred             eeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 039271          380 FVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEI  459 (609)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  459 (609)
                      .. + .+.+      ....+....++.+..++...+.+++    .+|++       ....+..++++.+++++.+...  
T Consensus       232 ~~-~-~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l----~~r~~-------~~~~l~~~~~~~~~~~~~~~~~--  290 (382)
T PRK11128        232 WQ-A-AGYS------ASTIGYLWSLGVVAEVLIFAFSNRL----FRRWS-------ARDLLLLSAICGVVRWGLMGST--  290 (382)
T ss_pred             HH-H-CCCC------HhHHHHHHHHHHHHHHHHHHHHHHH----HHHCC-------HHHHHHHHHHHHHHHHHHHHhh--
Confidence            11 1 1111      1112333344444445555555554    44432       3344667777777776666543  


Q ss_pred             hhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 039271          460 QRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCM-ASISFGNYVSSLLVVMVMG  537 (609)
Q Consensus       460 ~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~lg~~ig~~~~~~i~~  537 (609)
                                    .+.+.+++..++.+++++...+....++.+.. ++.+++++++.+ ....+|..+|+.+.|.+.+
T Consensus       291 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        291 --------------TALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          24555666778899999988899888888874 455688899887 4466777899999998765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.82  E-value=8e-24  Score=230.19  Aligned_cols=395  Identities=16%  Similarity=0.165  Sum_probs=234.9

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHH
Q 039271           93 NAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFY  172 (609)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (609)
                      ..++..+...++..++.+++|+++||+ |||+++..+.++..++.++..++  +.                 ..+.+.+.
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~--~~-----------------~~~~~~~~  106 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFA--PS-----------------YNNFWMLL  106 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccc--cc-----------------cccccccc
Confidence            467889999999999999999999996 99999999999999999888887  10                 02688999


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc---cchhHHHHHHHHH
Q 039271          173 LSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS---GKWTLGFLVSLAS  249 (609)
Q Consensus       173 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---~g~~~~f~~~~~~  249 (609)
                      ++|++.|++.|+..+....++.|..|++.      |+...++.+....+|..++..++..+.+.   .+||..+.+.++.
T Consensus       107 ~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~  180 (451)
T PF00083_consen  107 IGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIP  180 (451)
T ss_pred             ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999998      99999999999999999888776554333   3499988888766


Q ss_pred             HHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhh-HHhhhh
Q 039271          250 AVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIE-FLDKAA  328 (609)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  328 (609)
                      .++.++....                                .||+|+|+..+++.|++++..++.++.+..+ ..+...
T Consensus       181 ~l~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~  228 (451)
T PF00083_consen  181 SLLVLLLRFF--------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIK  228 (451)
T ss_pred             cccccccccc--------------------------------cccccceecccccccccccccccccccccccccccccc
Confidence            5544333222                                7888899888888888887777754331111 001000


Q ss_pred             cccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHH-HHHhcccceeeEecccccccccccccCcccccchhHH
Q 039271          329 TITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYS-VVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDIC  407 (609)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (609)
                      ...++. ...+..|+.+...+. ..++++....+.......+ .....+.+.+.. ....+..    ...+........+
T Consensus       229 ~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~----~~~~~~~~~~~~~  301 (451)
T PF00083_consen  229 AEKKES-QESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNS----FLATLILGLVNFL  301 (451)
T ss_pred             cccccc-cccceeeeecccccc-cccccccccccccccccccccccccccccccc-ccccccc----ccccccccccccc
Confidence            000000 000112322111110 1122222111111111111 111111111111 1111110    0111111122222


Q ss_pred             HHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHhhhhccCCCCCcccc--hhHHHHHHHH
Q 039271          408 SVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAG-ATEIQRLKYISPGEKASSL--SIFWQIPQYV  484 (609)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~~~i~~~~  484 (609)
                      ..++..        .+.+|++||+       .+..+.++++++++.++ .....          ....  .-.+.+....
T Consensus       302 ~~~~~~--------~~~~~~GRr~-------~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~  356 (451)
T PF00083_consen  302 GTLLAI--------FLIDRFGRRK-------LLIIGLLLMAICSLILGIIFFLG----------VSSSSWWSILSIVFLA  356 (451)
T ss_pred             cccccc--------cccccccccc-------ccccccccccccccccccccccc----------cccccccccccceeee
Confidence            222221        2244554443       25566666666655554 11000          0010  0111122222


Q ss_pred             HHHHH-HHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHH
Q 039271          485 LVGAS-EVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFL  563 (609)
Q Consensus       485 l~g~g-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~  563 (609)
                      +.... .....+..+.+..|.+|.+.|+++.++....+.+++.+++.+...+.+..                +....+++
T Consensus       357 l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----------------~~~~~~~i  420 (451)
T PF00083_consen  357 LFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL----------------GGWGVFLI  420 (451)
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------cccccchh
Confidence            22222 22334555678889999999999999999999999888877665443211                11235678


Q ss_pred             HHHHHHHHHHHHhhhccccccccCCchhhH
Q 039271          564 LAVLTAFDFVIYLICANWYKGINLDEDSCE  593 (609)
Q Consensus       564 ~a~~~~v~~v~~~~~~~~~~~~~~~~~~~~  593 (609)
                      +++++++..++.+++.||+|+++++|.++.
T Consensus       421 ~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  421 FAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             hHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            888888888888999999999999987753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.82  E-value=1.1e-17  Score=177.49  Aligned_cols=157  Identities=17%  Similarity=0.188  Sum_probs=114.1

Q ss_pred             HHHHHHHHhhC--CchhhhhHHHHHH-----HHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039271           78 NLVLFLTRVLQ--QENANAANNVSKW-----TGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKP  150 (609)
Q Consensus        78 ~~~~yl~~~~g--~~~~~~~~~~~~~-----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (609)
                      +...++.++..  .+.++.+.+.+..     .+...++.++.|+++||+ ||||++..+.++..++.+++.+.  ++.. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~--~~~~-   89 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLL--PSYA-   89 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhC--CChh-
Confidence            34445555443  4445555554432     233346889999999996 99999999999988888877766  1100 


Q ss_pred             CCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhh
Q 039271          151 TGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTIL  230 (609)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  230 (609)
                                 .........++++|+++|++.+...+...++++|.+|+++      |++..+..+.+..+|..+++.++
T Consensus        90 -----------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        90 -----------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             -----------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHH
Confidence                       0000112467889999999999999999999999999988      99999999999999999998877


Q ss_pred             hhcc--------cccchhHHHHHHHHHHHHHHH
Q 039271          231 VYYE--------DSGKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       231 ~~l~--------~~~g~~~~f~~~~~~~~~~~~  255 (609)
                      +.+.        +.++||+.|++.++..+++..
T Consensus       153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            6543        357899999887766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.81  E-value=1.7e-16  Score=170.07  Aligned_cols=167  Identities=13%  Similarity=0.060  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc----cchhH-HHHHHHHHHHHH
Q 039271           62 LANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY----WGRYL-TCAVFQLIFVVG  136 (609)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~-~~~~~~~~~~~~  136 (609)
                      +...+...+.+.....-+|.|+++ .|++.+++|++..+...  .+..+++|+++||+    +|||| .+..+.++.+++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            445566666666677889999985 59999999998766665  69999999999994    17766 677777777666


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      ...+.+.  +.                 ..+.+.+++..++.++..+...++..+++.|++|+++      |+++.++..
T Consensus        82 ~~~l~~~--~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~  136 (402)
T PRK11902         82 IAAMAFC--PP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKV  136 (402)
T ss_pred             HHHHHhc--Cc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHH
Confidence            6655554  11                 1346667777677788888888999999999999988      999999999


Q ss_pred             HHHhhhHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYEDS-GKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~~~~~~~~~  256 (609)
                      .+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988875 59999999988766555443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.81  E-value=3.8e-17  Score=181.30  Aligned_cols=140  Identities=21%  Similarity=0.169  Sum_probs=126.3

Q ss_pred             HhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCc
Q 039271           85 RVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLS  164 (609)
Q Consensus        85 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (609)
                      +..+.+.....+..+++.++..+++++.|.++|| +|||++++++.++.+++.++.+++                     
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a---------------------  168 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA---------------------  168 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence            4567788888999999999999999999999999 599999999999999999888888                     


Q ss_pred             chhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHH
Q 039271          165 SIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFL  244 (609)
Q Consensus       165 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~  244 (609)
                       .+++.+.+.|++.|++.++.......+++|++++++      |+.+.++ ......++.+++.+++++..  +||+.++
T Consensus       169 -~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  169 -PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             -CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence             789999999999999999999999999999999999      9999988 77778888888888888887  8999999


Q ss_pred             HHHHHHHHHHHH
Q 039271          245 VSLASAVIALLS  256 (609)
Q Consensus       245 ~~~~~~~~~~~~  256 (609)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            988777666555

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=5.8e-18  Score=178.23  Aligned_cols=325  Identities=12%  Similarity=0.118  Sum_probs=203.2

Q ss_pred             HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 039271           77 VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDG  156 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (609)
                      +.+| .+.+++|.+..+++++.+.+.++..++.++.|+++||+ ||||++..+.++..++.+.. ..             
T Consensus        21 ~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-------------   84 (355)
T TIGR00896        21 PLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-------------   84 (355)
T ss_pred             ccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------------
Confidence            4444 56778999999999999999999999999999999996 99999999988777766655 33             


Q ss_pred             CCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc
Q 039271          157 FISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS  236 (609)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~  236 (609)
                               .+.+.+++.|++.|++.+...+....++.|.+| ++      |++..++++...++|..+++.+++.+.+.
T Consensus        85 ---------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        85 ---------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ---------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     456778899999999999888888888888886 45      88999999999999999999999888765


Q ss_pred             c--chhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccc
Q 039271          237 G--KWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRK  314 (609)
Q Consensus       237 ~--g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~  314 (609)
                      .  +||+.|.+.++..++....+.   ++.++++++.++.                    .              +    
T Consensus       149 ~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------------~--------------~----  187 (355)
T TIGR00896       149 SGGHWQQALAWWALPALLALLAWI---PQVRRRVAANQTT--------------------T--------------R----  187 (355)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCCCCC--------------------C--------------C----
Confidence            4  389888776654443322221   1111100000000                    0              0    


Q ss_pred             cccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHH-HHHHHHHHHHHHHhcccceeeEecccccccccc
Q 039271          315 ILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKML-PIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGE  393 (609)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (609)
                                              ..+++.+     ++ +..+... ...+....++....+.+.++..  .+.+     
T Consensus       188 ------------------------~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~~-----  230 (355)
T TIGR00896       188 ------------------------LTPVRIW-----RS-PLAWQVTVFFGLQSGLYYSLIGWLPAILIS--HGAS-----  230 (355)
T ss_pred             ------------------------CCCchhh-----cC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC-----
Confidence                                    0000000     01 1111111 1111122222222222222211  1111     


Q ss_pred             cccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccc
Q 039271          394 FRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASS  473 (609)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  473 (609)
                       ....+.......+..++...+.+++.    +|+.++      +..+.++.++.+++++.+.+..              .
T Consensus       231 -~~~~g~~~~~~~~~~i~~~~~~g~l~----dr~~~~------~~~~~~~~~~~~~~~~~~~~~~--------------~  285 (355)
T TIGR00896       231 -AATAGSLLALMQLAQAASALLIPALA----RRVKDQ------RGIVAVLAVLQLVGLCGLLFAP--------------M  285 (355)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhHHHHH----hhhccc------hHHHHHHHHHHHHHHHHHHHhh--------------h
Confidence             11233445555556666666666654    343211      1234566666666666555431              1


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039271          474 LSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAP-DGIKSFGSSLCMASISFGNYVSSLLVVMVMGIT  539 (609)
Q Consensus       474 ~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~  539 (609)
                       +..+.  ..++.|++.+..+|...+.+.+..+ ++.++..+++.+....+++.+++.+.+.+.+.+
T Consensus       286 -~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       286 -HGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             -hHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             11121  3456788888888887777665554 577899999999888999999999999887543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.81  E-value=1.3e-16  Score=171.93  Aligned_cols=439  Identities=13%  Similarity=0.055  Sum_probs=243.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhh----hccchhHHHHHHH-H
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSD----SYWGRYLTCAVFQ-L  131 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~~~~~~-~  131 (609)
                      +++.+....+...+++-...++++.|+ +++|.+...++++..+..+...+.+|+.|+++|    |+ ||||.++++. +
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            456666667777777777778888876 579999999999999999999999999999999    55 9999998764 4


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      ..+++.+++..+......   ..+  ...+.......+.+.++..+..++....+++..++++|++|+++++    ++.+
T Consensus        83 ~~~~~l~ll~~~~~~~~~---~~~--~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a  153 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHL---FGD--NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIA  153 (477)
T ss_pred             HHHHHHHHHHhCchhhhh---ccc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHH
Confidence            444444554443110000   000  0000000011233444555566788888888999999999987632    3578


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhc--ccc-------------cchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhH
Q 039271          212 FCYFYFFLNVGSLFSNTILVYY--EDS-------------GKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPR  276 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l--~~~-------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (609)
                      .++.+...++|+.+|+.++++.  .+.             .+.++.|++.+++.++..+...+..++.+..++++  .+ 
T Consensus       154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~--~~-  230 (477)
T TIGR01301       154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD--FI-  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc--ch-
Confidence            9999999999999999988764  111             15688999988777766665544333321111000  00 


Q ss_pred             HHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHH-HH
Q 039271          277 VAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEA-KC  355 (609)
Q Consensus       277 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  355 (609)
                                       +  .   +.++.++         +..+..+.+.-               +     ...+. +.
T Consensus       231 -----------------~--~---~~~~~~~---------~~~~~~~~~i~---------------~-----~~~~mP~~  259 (477)
T TIGR01301       231 -----------------N--S---EAAPPSK---------HGEEAFFGELF---------------G-----AFKYLPRP  259 (477)
T ss_pred             -----------------h--h---hcccccc---------cchhhhHHHHH---------------H-----HHHHCCHH
Confidence                             0  0   0000000         00000000000               0     00000 11


Q ss_pred             HHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccC-----cccccchhHHHHHHHHHhhhhhhhhccccccCC
Q 039271          356 VLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLP-----AASMSAFDICSVLICTGIYRKILVPVAGKLNGN  430 (609)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  430 (609)
                      +.+...+.++.-+-|..+..+.|.+.-+..+-...-..-...     ..+...++.+...+...+..+    +.||++++
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~----l~~~~g~~  335 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEK----LCRGWGAG  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccc
Confidence            122222333333333333333333222111100000000111     112233333333344444444    34554321


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCCCC---cccch-hHHHHHHHHHHHHHHHhhhhhhHHHhhhcC
Q 039271          431 PKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKY-ISPGEK---ASSLS-IFWQIPQYVLVGASEVFMYVGQLEFFNGQA  505 (609)
Q Consensus       431 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~---~~~~~-~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~  505 (609)
                      +      ..-.++.++.+++++...+......|. ..++.|   +.... .+..+..+.+.|+........-++++.+..
T Consensus       336 k------~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~  409 (477)
T TIGR01301       336 K------RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS  409 (477)
T ss_pred             h------hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence            1      123677778888877776654321110 000000   00111 245556667788877777777778888888


Q ss_pred             Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccc
Q 039271          506 PD--GIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYK  583 (609)
Q Consensus       506 p~--~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~  583 (609)
                      |+  +-.|..+|+.|....+...+.+...+.+.+..++.              ..+.+.+.++.++++++..++..|+.+
T Consensus       410 ~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       410 SNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             cccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            84  45599999999999999999988888755443222              123567778888888888888887754


Q ss_pred             c
Q 039271          584 G  584 (609)
Q Consensus       584 ~  584 (609)
                      +
T Consensus       476 ~  476 (477)
T TIGR01301       476 V  476 (477)
T ss_pred             C
Confidence            3

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.80  E-value=1.7e-16  Score=170.39  Aligned_cols=172  Identities=13%  Similarity=0.099  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      +..++...+...+.. ++...+.+.+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||+++..+.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            444444445455444 3443444566889999999999999999999999999999999996 99999999999999888


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      +++..+.                   ...+++.+++.|++.|+|.+...+...+++.+..|+++      |++..++.+.
T Consensus        83 ~l~~~~~-------------------~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  137 (410)
T TIGR00885        83 FLFWPAA-------------------EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQS  137 (410)
T ss_pred             HHHHHHH-------------------hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHH
Confidence            7755431                   01457889999999999999999999999999988877      7788899999


Q ss_pred             HHhhhHHHHhhhhhhcccc--------------------------cchhHHHHHHHHHHHHHHHH
Q 039271          218 FLNVGSLFSNTILVYYEDS--------------------------GKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       218 ~~~ig~~~~~~i~~~l~~~--------------------------~g~~~~f~~~~~~~~~~~~~  256 (609)
                      ..++|..++|.+++.+...                          .+||++|++.++..++..++
T Consensus       138 ~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       138 FNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998866321                          36999998877655544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.6e-17  Score=170.27  Aligned_cols=182  Identities=11%  Similarity=-0.019  Sum_probs=147.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      ++|.++...+. +..++..+.+...+.+++.+++|+|+.|.++++.+..+...+..++-|++.||+ |.|++..++.++.
T Consensus        12 ~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence            45555544443 444445555666777788899999999999999999999999999999999995 9999999999998


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      ++-++..+++..                   ..+.+.+++...+.|++.+ ..+...++++.+||+++      +|.+.|
T Consensus        90 ~IP~~~~~~a~~-------------------~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~------qG~AlG  143 (417)
T COG2223          90 LIPCLGLAFAVT-------------------YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK------QGLALG  143 (417)
T ss_pred             HHHHHHHHHHcc-------------------CCchHHHHHHHHHHhcccc-eehcccccccccCChhh------hhHHHH
Confidence            888888887721                   1334788888888887644 45677899999999999      899999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccc---hhHHHHHHHHHHHHHHHHHHhcCCcc
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGK---WTLGFLVSLASAVIALLSYLMGTPGY  264 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~  264 (609)
                      ++. ..|+|..+...+++++....|   |+....+..+..+++.+.+++..+..
T Consensus       144 I~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         144 IAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             Hhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999 999999999999999988888   88888888877777777666655443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.79  E-value=1.1e-16  Score=168.56  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=115.9

Q ss_pred             HHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHHHhhhccCCCC
Q 039271           78 NLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY----WGRYLTC-AVFQLIFVVGLVLLSVLSFLMIKPTG  152 (609)
Q Consensus        78 ~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (609)
                      .++. +.+++|.|.++.++.... .+...+ .++.|.++||+    +||||.+ +.+.++..+..+.+.+.  +.     
T Consensus        10 ~~~~-~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--~~-----   79 (356)
T TIGR00901        10 TLPY-WLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--VP-----   79 (356)
T ss_pred             HHHH-HHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--Cc-----
Confidence            4444 455789999999988655 444444 89999999995    3899975 55555555554444433  11     


Q ss_pred             CCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhh
Q 039271          153 CGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVY  232 (609)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~  232 (609)
                                  ..+.+.+....++.+++.+...++..+++.|++|+++      |+++.++...+.++|.++++.++++
T Consensus        80 ------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~  141 (356)
T TIGR00901        80 ------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALV  141 (356)
T ss_pred             ------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1345566666667788888888999999999999888      9999999999999999999999998


Q ss_pred             cccccc--------hhHHHHHHHHHHHHHHHHHH
Q 039271          233 YEDSGK--------WTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       233 l~~~~g--------~~~~f~~~~~~~~~~~~~~~  258 (609)
                      +....|        ||..|++.++..+++.+..+
T Consensus       142 l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       142 LASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            888777        99999998887666555444

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=1e-15  Score=166.52  Aligned_cols=362  Identities=11%  Similarity=0.072  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHH-HHHHHHHHHH
Q 039271           61 LLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY---WGRYLTC-AVFQLIFVVG  136 (609)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~-~~~~~~~~~~  136 (609)
                      -.+..+..++.+....++++.|+++.+|++..++|.+.....+...+..++.|+++||.   +||||.. .++.+...+.
T Consensus        13 yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         13 YSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             hccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            33455666777777778888999999999999999999999999999999999999993   3777755 5555444444


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      ..++...  |..    .         .........++...+.+++.+...++..++..++..+.++     |.+..++..
T Consensus        93 ~~~~~~~--~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r~  152 (448)
T PRK09848         93 SVLVFWV--PTD----W---------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAARG  152 (448)
T ss_pred             HHHHHhC--cCC----C---------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHHH
Confidence            4333211  110    0         0001233344445567888888888888887877665332     555555544


Q ss_pred             HH-----HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccc
Q 039271          217 FF-----LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVV  291 (609)
Q Consensus       217 ~~-----~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      ++     .+++..++|.+.+.........+..+. .++.+++.++.+......+++.+.+.+...               
T Consensus       153 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~---------------  216 (448)
T PRK09848        153 IAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPS---------------  216 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCC---------------
Confidence            33     445666677776644322111111111 122222222222111111111110000000               


Q ss_pred             cCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHH
Q 039271          292 VPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSV  371 (609)
Q Consensus       292 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (609)
                                                     ..+.               ++     .+...|.+.............+.
T Consensus       217 -------------------------------~~~~---------------~~-----~l~~n~~f~~~~~~~~~~~~~~~  245 (448)
T PRK09848        217 -------------------------------LKIS---------------LQ-----TLKRNRPLFMLCIGALCVLISTF  245 (448)
T ss_pred             -------------------------------HHHH---------------HH-----HHhCCchHHHHHHHHHHHHHHHH
Confidence                                           0000               00     00001111111111111111111


Q ss_pred             HHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHH
Q 039271          372 VFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAM  451 (609)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~  451 (609)
                      .+....+++.....+.+      ............+..++..++..++    .+|++       ....+.+|.++..+++
T Consensus       246 ~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~l~~~l----~~r~g-------~~~~~~~g~~~~~i~~  308 (448)
T PRK09848        246 AVSASSLFYVRYVLNDT------GLFTVLVLVQNLVGTVASAPLVPGM----VARIG-------KKNTFLIGALLGTCGY  308 (448)
T ss_pred             HHhhhheeeEeeecCCh------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHH
Confidence            22222223322211111      1111111112233344455555554    44443       2234667777777776


Q ss_pred             HHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcc-------hhHHHHHHHHHHHHHH
Q 039271          452 IAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDG-------IKSFGSSLCMASISFG  524 (609)
Q Consensus       452 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~lg  524 (609)
                      +.+.+.              ...+.++++...++.++|++...+..+++..+..|.+       .+|.++|++++.+.+|
T Consensus       309 ~~~~~~--------------~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg  374 (448)
T PRK09848        309 LLFFWV--------------SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG  374 (448)
T ss_pred             HHHHHc--------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence            665542              1234555666677889999999999999988888754       4699999999999999


Q ss_pred             HHHHHHHHHHhhhhcc
Q 039271          525 NYVSSLLVVMVMGITA  540 (609)
Q Consensus       525 ~~ig~~~~~~i~~~~~  540 (609)
                      ..+|+.+.+.+.+..+
T Consensus       375 ~aig~~i~g~~l~~~G  390 (448)
T PRK09848        375 QAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999998876653

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.78  E-value=9e-16  Score=168.13  Aligned_cols=364  Identities=12%  Similarity=0.059  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhh----hccch-hHHHHHHHHHHHHHH
Q 039271           63 ANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSD----SYWGR-YLTCAVFQLIFVVGL  137 (609)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr-r~~~~~~~~~~~~~~  137 (609)
                      +..+..++.+..+.++++.|+++.+|++...+|.+..+.-+.-++..|+.|+++|    | +|| |+-++++.+...++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence            4456667777778899999999999999999999999999999999999999999    6 498 455556666656655


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCC-CCChhhhhccchhHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFD-ESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~  216 (609)
                      .++...  |...              .......+++..++.+++......+..++.+|+.+ +++      |.+..++..
T Consensus        92 ~llf~~--p~~~--------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~~~~  149 (473)
T PRK10429         92 FLLFSA--HLFE--------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVPYPR  149 (473)
T ss_pred             HHHHcC--CCCC--------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHHHHH
Confidence            444322  2110              01123344455556678888888888999999985 444      888888877


Q ss_pred             HHHhhhHHHHhhhhhhccc-------ccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcc
Q 039271          217 FFLNVGSLFSNTILVYYED-------SGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWN  289 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      ...++|+.+.+.+...+..       ..+|+....+.++..++..+..+...++.. +++..++..              
T Consensus       150 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~--------------  214 (473)
T PRK10429        150 FFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVSAE--------------  214 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Ccccccccc--------------
Confidence            7777776666555433211       124665555555544443333333222110 000000000              


Q ss_pred             cccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHH
Q 039271          290 VVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIY  369 (609)
Q Consensus       290 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (609)
                                                  .++.++.+...                    .+...|.++..+...+.....
T Consensus       215 ----------------------------~~~~~~~~~~~--------------------~~~~n~~~~~ll~~~~~~~~~  246 (473)
T PRK10429        215 ----------------------------GSHLTLKDIVA--------------------LIYKNDQLSCLLGMALAYNIA  246 (473)
T ss_pred             ----------------------------ccCCCHHHHHH--------------------HHhcCHHHHHHHHHHHHHHHH
Confidence                                        00000000000                    000112222222221111122


Q ss_pred             HHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHH
Q 039271          370 SVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGML  449 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~  449 (609)
                      .........++....  ...     ......+..+..+..++..++..++    .+|+++|       ..+.++.++..+
T Consensus       247 ~~~~~~~~~y~~~y~--~~~-----~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~gkk-------~~~~~~~~~~~~  308 (473)
T PRK10429        247 SNIINGFAIYYFTYV--IGD-----ADLFPYYLSYAGAANLVTLILFPRL----VKSLSRR-------ILWAGASIFPVL  308 (473)
T ss_pred             HHHHhhheeeEEEEE--CCC-----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCcH-------HHHHHHHHHHHH
Confidence            222222222332221  111     0111223334445555566666554    4554433       234455555444


Q ss_pred             HHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCC-------cchhHHHHHHHHHHHH
Q 039271          450 AMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAP-------DGIKSFGSSLCMASIS  522 (609)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~  522 (609)
                      +.+.+.....           ....+.+.+++..++.+++.+...+...+++.|..+       .+..|...|.+.+..-
T Consensus       309 ~~~~~~~~~~-----------~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K  377 (473)
T PRK10429        309 SCGVLLLMGL-----------AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK  377 (473)
T ss_pred             HHHHHHHHhc-----------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence            4443322100           012234445556677888888888888888888865       4557779999999999


Q ss_pred             HHHHHHHHHHHHhhhhccc
Q 039271          523 FGNYVSSLLVVMVMGITAK  541 (609)
Q Consensus       523 lg~~ig~~~~~~i~~~~~~  541 (609)
                      ++..+++.+.+.+.+..+.
T Consensus       378 ~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        378 GGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            9999999999988876543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.76  E-value=2.7e-15  Score=159.58  Aligned_cols=381  Identities=12%  Similarity=0.095  Sum_probs=211.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 039271           66 GLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSF  145 (609)
Q Consensus        66 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  145 (609)
                      ++..+.+-...++++.|+++ .|+|..++|.+.++..+...+.+++.|.++||+..+||.+.+..++..+...+....  
T Consensus        12 f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--   88 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--
Confidence            33333444455889999985 789999999999999999999999999999996346777766555544444333332  


Q ss_pred             hccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHH
Q 039271          146 LMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLF  225 (609)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  225 (609)
                                          .+++.++...++..+......|...++..+...++        +.-+|-.....++|-++
T Consensus        89 --------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~--------~~~YG~iRlwGSiGf~~  140 (400)
T PF03825_consen   89 --------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR--------GKDYGRIRLWGSIGFIV  140 (400)
T ss_pred             --------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc--------cCCCCcchhhhhHHHHH
Confidence                                44666666666777777777787777777765532        22344445555566555


Q ss_pred             Hhhh-hhhccccc---chhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhh
Q 039271          226 SNTI-LVYYEDSG---KWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYE  301 (609)
Q Consensus       226 ~~~i-~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~  301 (609)
                      +... ++++....   +....+++.++..++.....+. .|+.+.++..++..++                         
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~-------------------------  194 (400)
T PF03825_consen  141 AALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKK-------------------------  194 (400)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCccc-------------------------
Confidence            5332 22222222   2234555554433322222222 2221110000000000                         


Q ss_pred             hcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceee
Q 039271          302 VAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFV  381 (609)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (609)
                                      .   ...+.               |+.     .++.+.+...+..++........+.....++.
T Consensus       195 ----------------~---~~~~~---------------~~l-----lk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~  235 (400)
T PF03825_consen  195 ----------------L---LGLDA---------------LKL-----LKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQ  235 (400)
T ss_pred             ----------------c---cchHH---------------HHH-----hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0   00000               000     00011111112222222222223222222222


Q ss_pred             EecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039271          382 EQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQR  461 (609)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  461 (609)
                      ..+. ..      ....+...++..+.=+.+....+++    .+|++       ..+.+.++.+..++-..++.+...  
T Consensus       236 ~~gg-~~------~~~~g~~~~l~~~aEi~~f~~~~~~----~~r~g-------~~~ll~~a~~~~~vR~~l~a~~~~--  295 (400)
T PF03825_consen  236 ELGG-YS------GSTIGILWALGVVAEIPFFFFSGRF----LKRFG-------IKWLLLLALVAYAVRWLLYAYFSD--  295 (400)
T ss_pred             Hccc-ch------hhHHHHHHHHHHHHHHHHHHHHHHH----HHhcC-------HHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            2110 00      1111222333333333333344443    44532       567788999999999888887520  


Q ss_pred             hhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcc
Q 039271          462 LKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMAS-ISFGNYVSSLLVVMVMGITA  540 (609)
Q Consensus       462 ~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~lg~~ig~~~~~~i~~~~~  540 (609)
                               +.......++....++|+..++...+...++.+.+|++.|++++++++.. .++|+.+|..+.|++.+..+
T Consensus       296 ---------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  296 ---------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             ---------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence                     00111122344456899999999999999999999999999999999865 67999999999998876432


Q ss_pred             cCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 039271          541 KGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANW  581 (609)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  581 (609)
                      ...          ...+..++.+.+++.++..++++++.|+
T Consensus       367 ~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  367 ARG----------MFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             chh----------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            211          1123345667777777777777777654

>PRK09669 putative symporter YagG; Provisional

Probab=99.75  E-value=3.4e-15  Score=162.29  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhH-HHHHHHHHHHHHHH
Q 039271           63 ANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY---WGRYL-TCAVFQLIFVVGLV  138 (609)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~~~~~~~  138 (609)
                      +..+..+..+..+..+++.|+++++|++...+|.+..+..+.-++..|+.|+++||.   +|||| .++++.+...+..+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            344566666667778999999999999999999999999999999999999999993   37755 45566666655554


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ++...  |...              .......+++..++.+.+......+..++.+|+.++.++     |++..++....
T Consensus        96 l~f~~--p~~~--------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~~~r~~~  154 (444)
T PRK09669         96 LTFYT--PDFG--------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQSWRFAL  154 (444)
T ss_pred             HHHhC--CCCC--------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHHHHHHHH
Confidence            43332  3211              012344555555566767777777788999998854322     77788888888


Q ss_pred             HhhhHHHHhhhhhhccc-------ccchhHHHHHHHHHHHHHHHH
Q 039271          219 LNVGSLFSNTILVYYED-------SGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~-------~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      .++|+.+++.+...+..       ..+|+..+.+.+++.++..+.
T Consensus       155 ~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        155 SFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88887777654433221       246777776666555444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.73  E-value=4.5e-16  Score=169.78  Aligned_cols=427  Identities=16%  Similarity=0.084  Sum_probs=249.7

Q ss_pred             HHHHHHHHHHHHHHHhhH---HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVG---VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~---~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |+++++.++.++..+++.   ..+-..+.++++.+..+++|+.++...+..+..|+.+.+.||+ |.|++.+.|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            556666666666666544   2344567788999999999999999999999999999999996 999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHH-HHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYL-IAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      |.++..++                      .+.+.+++...+ .|+|.++.......++..+|++ +      |+.+.|+
T Consensus       124 g~~lssF~----------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R~lA~Gi  174 (509)
T KOG2504|consen  124 GLLLSSFA----------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------RALATGI  174 (509)
T ss_pred             HHHHHHHH----------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------HHHHHhh
Confidence            99999998                      667777777665 6899999998888888877764 3      8888988


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA  294 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  294 (609)
                      -..+..+|..+=|.+..++.+.+|||+.+++.+.+.+-.+......+|.....++.  ..++...        .....+.
T Consensus       175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~~~~~~~  244 (509)
T KOG2504|consen  175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------SAASVES  244 (509)
T ss_pred             hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------ccccccc
Confidence            88888899999899999999999999999988877766666666666543333222  0000000        0000000


Q ss_pred             CchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCC-CCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 039271          295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDL-AGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVF  373 (609)
Q Consensus       295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (609)
                      .+... +....++ .....+..........+..    ++.. ...+.....+..+...+...+...+...+....+...+
T Consensus       245 ~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~  318 (509)
T KOG2504|consen  245 TPKPV-ELRISER-DSGLKKLSLSNLATLKRGP----DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPF  318 (509)
T ss_pred             ccccc-ccccccC-CCCCCcccccchhhhhhCC----ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            00000 0000000 0000000000000000000    0000 00000000000111111111111111111111122221


Q ss_pred             hcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 039271          374 TQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIA  453 (609)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~  453 (609)
                      ...+.+..  ..+.+      .........+..+..++.-++.+.+.|...         ++......++++..+++.++
T Consensus       319 ~~l~~~~~--~~g~~------~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~~~~  381 (509)
T KOG2504|consen  319 VYLPSYAK--SLGLS------SNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLARLF  381 (509)
T ss_pred             HHHHHHHh--hcCCC------hhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHHHHH
Confidence            11111111  11111      222333333434444444444333322111         12455677777777777755


Q ss_pred             HHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          454 AGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVV  533 (609)
Q Consensus       454 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~  533 (609)
                      ....                .+.+.++....++|+..+....-....+.+..+.+.-+.+.|+....++++..+|+.+.+
T Consensus       382 ~p~~----------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  382 LPFA----------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHh----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            5543                244556666677777777777666678889999999999999999999999999999988


Q ss_pred             HhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhc
Q 039271          534 MVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICA  579 (609)
Q Consensus       534 ~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~  579 (609)
                      .+.+.+               +.|...|++.+++.+++.++.++..
T Consensus       446 ~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  446 LLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeecc---------------CCeeeehhhcChHHHHHHHHHHHhH
Confidence            665433               2244457777888777776665544

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.73  E-value=1.4e-15  Score=160.29  Aligned_cols=158  Identities=12%  Similarity=0.002  Sum_probs=136.9

Q ss_pred             HhhHHHHHHHHHHhhCCchhh-hhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039271           73 FGVGVNLVLFLTRVLQQENAN-AANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPT  151 (609)
Q Consensus        73 ~~~~~~~~~yl~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (609)
                      =...++...|+.+++|++..+ .|.+.++++.++.++.+++|+++||+ |-|+++.++.+...+..+++.+.        
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa--------  112 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG--------  112 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH--------
Confidence            344577788999999999999 99999999999999999999999995 99999999999999999988887        


Q ss_pred             CCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhh
Q 039271          152 GCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV  231 (609)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  231 (609)
                                    .++..+.+.|++.|++.|... +...++..++|+++      |+++.++...+.++|.++++.+++
T Consensus       113 --------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       113 --------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          678899999999999999999 99999999999988      999999999999999999999999


Q ss_pred             hcccccchhHHHH---HHHHHHHHHHHHHHhcC
Q 039271          232 YYEDSGKWTLGFL---VSLASAVIALLSYLMGT  261 (609)
Q Consensus       232 ~l~~~~g~~~~f~---~~~~~~~~~~~~~~~~~  261 (609)
                      + ...+||++-+.   +......+++++.++.+
T Consensus       172 l-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       172 L-LVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             H-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9 45688886443   44444555555544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.73  E-value=9.8e-15  Score=155.83  Aligned_cols=178  Identities=11%  Similarity=-0.117  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHH--HHHHHHHHHHHHhHH-HHHhhhccchhHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANN--VSKWTGTVYMCSLIG-AFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      +..+....+.+.+.+....+.+|.|++ +.|.+..++|..  ...+.+...+..|+. ++++||+ ||||..++...+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            445566777788887888899999887 569999999996  466788887888887 5579995 99999766653322


Q ss_pred             H-HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          135 V-GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      . ....+... .+.                 ......++....+.++..+...+...++..|..++++      ++...+
T Consensus        81 ~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~  136 (390)
T TIGR02718        81 SACLASLALV-GPD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNA  136 (390)
T ss_pred             HHHHHHHHcC-Ccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHH
Confidence            2 12222211 011                 0112223333344455555566666666667665554      666677


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGT  261 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  261 (609)
                      ....+..+|..+|+.+.+++.+..||+..|++.++..++..+..+..+
T Consensus       137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~  184 (390)
T TIGR02718       137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK  184 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777788899999998888999989999999998877766555544433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.72  E-value=1.5e-14  Score=157.93  Aligned_cols=382  Identities=12%  Similarity=0.052  Sum_probs=217.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccc-----hhHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWG-----RYLTCAVFQL  131 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~~~~  131 (609)
                      .+.++....+..++. +.+...++.++.+++|++.++++...+...+...+-.+ +|.++||+ +     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence            344455567778887 77777888899999999999999988888888888666 99999996 7     6777777665


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +.. ...+..+. .+                  ........+.+++.+++.+....+.-++..|..+ ++++   .++..
T Consensus       104 l~~-~~~~~~l~-~~------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~  159 (468)
T TIGR00788       104 LGS-AILYGLLP-GK------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSL  159 (468)
T ss_pred             HHH-HHHHHhcc-cc------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCe
Confidence            542 11111121 00                  1223334446778889999988999999999998 4321   13445


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccc
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVV  291 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      .++.+...++|..+|+.++|.+.+.++|+..|++.++..++..+...+.+++.+...|.......     ..+..     
T Consensus       160 ~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~-----~~~~~-----  229 (468)
T TIGR00788       160 VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE-----MNMAL-----  229 (468)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch-----hhhhh-----
Confidence            56666777899999999999999989999999998877766644444433321011111000000     00000     


Q ss_pred             cCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHH
Q 039271          292 VPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSV  371 (609)
Q Consensus       292 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (609)
                                             ..........+..           +.-|+      ....+.+...+.+   ..+.+.
T Consensus       230 -----------------------~~~~~~~~~~~~~-----------~~l~~------~l~~~~i~~~l~f---ifl~~~  266 (468)
T TIGR00788       230 -----------------------LTLGVLANVKVQI-----------LGLRG------AIQLLEIAKPLIF---IFLSYA  266 (468)
T ss_pred             -----------------------hhhhHHHHHHHHH-----------HHHHH------HHhcHHHHHHHHH---HHHHHh
Confidence                                   0000000000000           00000      0000111111111   111011


Q ss_pred             HHhcccce-eeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHH
Q 039271          372 VFTQMASL-FVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLA  450 (609)
Q Consensus       372 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~  450 (609)
                      ........ +..+.....    ......+.......+..++...+.++.    .+|+       +.+..+.++.++.+++
T Consensus       267 ~~~~~~~~~f~~~~~~lG----~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~~-------~~r~~l~~~~~l~~~~  331 (468)
T TIGR00788       267 NLPGASGSVFCATTQCLP----GGPSFSGMSKVVGNLGSLCGVGGYDRF----LKTF-------PYRLLFGVTTLLYTLS  331 (468)
T ss_pred             hcCCCCceeEEEEcccCC----CCcchhhhHHHHHHHHHHHHHHHHHHH----HhhC-------CHHHHHHHHHHHHHHH
Confidence            11111111 111111111    112223334444455555555555543    2332       2555677777777766


Q ss_pred             HHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 039271          451 MIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSL  530 (609)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~  530 (609)
                      .+........ .+.  .   ....+.++++...++.+++.++.+.+...++.+.+|++.+|+..|+.++..++|+.+++.
T Consensus       332 ~~~~~~l~~~-~~~--~---~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~  405 (468)
T TIGR00788       332 SLFDLILVKR-WNL--A---FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGF  405 (468)
T ss_pred             HhCceeeeec-ccc--c---cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence            5443211100 000  0   001123344555677888888888888999999999999999999999999999999999


Q ss_pred             HHHHhhhhc
Q 039271          531 LVVMVMGIT  539 (609)
Q Consensus       531 ~~~~i~~~~  539 (609)
                      +.+.+.+..
T Consensus       406 ~gg~l~~~~  414 (468)
T TIGR00788       406 LGVLLMETI  414 (468)
T ss_pred             HHHHHHHHc
Confidence            888887654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.72  E-value=2.4e-15  Score=150.21  Aligned_cols=183  Identities=15%  Similarity=0.082  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 039271           61 LLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLL  140 (609)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  140 (609)
                      .....+..-...-.....+.+-+....|.+.-+..++......+..+++..+|.++|++ |||+.+.+..+...+..+.-
T Consensus        82 ~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is  160 (528)
T KOG0253|consen   82 VAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVIS  160 (528)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhh
Confidence            33334444444444555666667778899999999999999999999999999999995 99999988876655544444


Q ss_pred             HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHh
Q 039271          141 SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLN  220 (609)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  220 (609)
                      ..+                      +|+..++..|.+.++|.|+ .|...++-.|.-|..+      |....-+. ....
T Consensus       161 ~~s----------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~wa  210 (528)
T KOG0253|consen  161 GAS----------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWA  210 (528)
T ss_pred             cCC----------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHH
Confidence            433                      6678899999999999999 8888999999999877      77766665 7778


Q ss_pred             hhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCCh
Q 039271          221 VGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPL  274 (609)
Q Consensus       221 ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (609)
                      +|.++...+.-....++||||..........+...++++..+..+..-.++.+.
T Consensus       211 ig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~  264 (528)
T KOG0253|consen  211 IGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDY  264 (528)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChH
Confidence            999998888877777899999877766555444444444443333333334333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.72  E-value=2.4e-15  Score=151.41  Aligned_cols=119  Identities=18%  Similarity=0.113  Sum_probs=105.9

Q ss_pred             hCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcch
Q 039271           87 LQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSI  166 (609)
Q Consensus        87 ~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (609)
                      .+.+..-+|.+-+.+.++.++.++..|.+|||| |||+++..+.+..++...+.+.+                      .
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S----------------------~  119 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS----------------------R  119 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence            344556689999999999999999999999998 99999999999888877777777                      7


Q ss_pred             hHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc
Q 039271          167 FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       167 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  235 (609)
                      |+..+.++|++.|+..|-.. .+.++++|.+++++      |+.+++....+..+|.++||.++|++..
T Consensus       120 ~F~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 NFAAFVLARFLGGIFKGNLS-VIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHHHhhhhccCchH-HHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence            78777778999999887754 67899999999988      9999999999999999999999999987

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.71  E-value=1.5e-14  Score=158.34  Aligned_cols=148  Identities=17%  Similarity=0.161  Sum_probs=120.3

Q ss_pred             HHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 039271           78 NLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGF  157 (609)
Q Consensus        78 ~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (609)
                      ....++.+++|-+ .+..|+.+...+...+..++.|+|+|.+ |||..++.+.++..+|.+..+.+              
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA--------------  128 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA--------------  128 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC--------------
Confidence            3446788888875 6678999999999999999999999995 99999999999999999998887              


Q ss_pred             CccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccccc
Q 039271          158 ISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSG  237 (609)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~  237 (609)
                              ++...+..+..+.|+|.|... .....++|..|.+.      |..+..+.....-+....+|.++..+..+.
T Consensus       129 --------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~  193 (599)
T PF06609_consen  129 --------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHS  193 (599)
T ss_pred             --------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCC
Confidence                    778899999999999976655 55667899999877      776666655554455556777776666667


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 039271          238 KWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       238 g~~~~f~~~~~~~~~~~~~  256 (609)
                      +|||.|++.++...++++.
T Consensus       194 ~WRw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  194 GWRWIFYIFIIWSGIALVL  212 (599)
T ss_pred             CcchHHHHHHHHHHHHHHH
Confidence            8999999988776666543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.71  E-value=8e-16  Score=158.31  Aligned_cols=142  Identities=15%  Similarity=0.175  Sum_probs=104.6

Q ss_pred             CchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhH
Q 039271           89 QENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFA  168 (609)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (609)
                      .+....+.+..+..++..+++++.|+++||+ |||+++...+++.++++++++++.               |.+....-.
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------~~~~~~~~m  144 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------GTTSPLGVM  144 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------CCCCCcchh
Confidence            4567778889999999999999999999995 999999999999999988555541               111111346


Q ss_pred             HHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH----HHHHHhhhHHHHhhhhhhccccc-------
Q 039271          169 AIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY----FYFFLNVGSLFSNTILVYYEDSG-------  237 (609)
Q Consensus       169 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~ig~~~~~~i~~~l~~~~-------  237 (609)
                      +.+...|++.|+|.|+-+|...+..+|..-.+.      ||...+.    +.++.-.|++++-++...+....       
T Consensus       145 ~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~  218 (538)
T KOG0252|consen  145 MTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYP  218 (538)
T ss_pred             hHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCch
Confidence            788899999999999999999999999877776      7766554    44455555555555544432211       


Q ss_pred             ----chhHHHHHHHHHHHH
Q 039271          238 ----KWTLGFLVSLASAVI  252 (609)
Q Consensus       238 ----g~~~~f~~~~~~~~~  252 (609)
                          =||..|.+.++..+.
T Consensus       219 ~ld~vWRl~~glg~vpa~~  237 (538)
T KOG0252|consen  219 HLDGVWRIIFGLGAVPALL  237 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence                288888776555443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.68  E-value=8.1e-15  Score=165.18  Aligned_cols=201  Identities=16%  Similarity=0.208  Sum_probs=148.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      +|.+.+.+....+....+.++.......++++++++..+.|++.+.+.+++.++.++.|+++||+ ||||.+.++.+++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~~  109 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIMG  109 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHHH
Confidence            44443444434454445556666666778889999999999999999999999999999999995 99999999999999


Q ss_pred             HHHHHHHHHhhhcc-C----------------CCCCCCCC----------CccCCCc--chhHHHHHHHHHHHHHhhcCc
Q 039271          135 VGLVLLSVLSFLMI-K----------------PTGCGDGF----------ISCKPLS--SIFAAIFYLSIYLIAFGYGGH  185 (609)
Q Consensus       135 ~~~~~~~~~~~~~~-~----------------~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~l~g~~~~~~  185 (609)
                      ++.++.++.-+... +                ...|..+.          ..|.+..  ...+..++++|+++|+|.+..
T Consensus       110 lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~  189 (633)
T TIGR00805       110 LGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPI  189 (633)
T ss_pred             HHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcc
Confidence            99998876531110 0                00111000          0111101  113567889999999999999


Q ss_pred             hhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccccc----------------------chhHHH
Q 039271          186 QPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSG----------------------KWTLGF  243 (609)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~----------------------g~~~~f  243 (609)
                      .+...+++.|.+|+++      |+..+++++.+..+|..+|+++++++.+.+                      +|+..|
T Consensus       190 ~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F  263 (633)
T TIGR00805       190 FPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF  263 (633)
T ss_pred             hhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence            9999999999999998      999999999999999999999999876532                      277778


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 039271          244 LVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~  262 (609)
                      ++.+++.++..+.++..++
T Consensus       264 li~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       264 LICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHHHHHHHHHhCcc
Confidence            8877666655544444333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.68  E-value=1.5e-14  Score=151.66  Aligned_cols=385  Identities=11%  Similarity=0.049  Sum_probs=217.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH-
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV-  135 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~-  135 (609)
                      ..+......++..+++-...++++.|++++.|++.+++|.+.++..+...+.+|+.|.++||+ |.||.+++...+..+ 
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence            455555556666666666779999999999999999999999999999999999999999995 977766554433222 


Q ss_pred             -HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHh----hcCchhhhhhhhhccCCCCChhhhhccch
Q 039271          136 -GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFG----YGGHQPTLATFGADQFDESKPKERQSKTL  210 (609)
Q Consensus       136 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  210 (609)
                       +.....+ ..|...                .|   ++++.++.++.    .....|..-+++.+.     +  |+ .+.
T Consensus        87 ~~pff~~v-~~pll~----------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-----s--r~-~~f  138 (412)
T PF01306_consen   87 FGPFFIYV-FGPLLQ----------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERV-----S--RR-NGF  138 (412)
T ss_dssp             CHHHHHHT-HHHHHH----------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-----H--HH-HSS
T ss_pred             HHHHHHHH-HHHHHH----------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHH-----H--HH-hcC
Confidence             2222211 112110                11   22333332333    333334443433322     1  11 333


Q ss_pred             hHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhccc
Q 039271          211 FFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNV  290 (609)
Q Consensus       211 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      =+|-..+..++|.+++..++|.+.+ .+.+..||+..+..++..++.+..++..+++.+..+                  
T Consensus       139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~------------------  199 (412)
T PF01306_consen  139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD------------------  199 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST------------------
T ss_pred             CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc------------------
Confidence            3666777889999999999998886 566788887765554444444443332111110000                  


Q ss_pred             ccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHH
Q 039271          291 VVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYS  370 (609)
Q Consensus       291 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (609)
                          .          +++        ..++.+..+..                     ++.+.++++....+.......|
T Consensus       200 ----~----------~~~--------~~~~~~~~~~~---------------------~l~k~~~fw~~~l~v~g~~~~Y  236 (412)
T PF01306_consen  200 ----A----------LGA--------KKDKVSLKDVL---------------------SLFKMRNFWFFVLFVIGVAAIY  236 (412)
T ss_dssp             ----T----------SSS--------------HHHHH---------------------HHTTSHHHHHHHHHHHHHHHHH
T ss_pred             ----c----------ccc--------CCCCCcHHHHH---------------------HHhcchhHHHHHHHHHHHHHHH
Confidence                0          000        00000000000                     0111233333333333343444


Q ss_pred             HHHh-cccceeeEecccccccccccccCcccccchhHHH---HHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHH
Q 039271          371 VVFT-QMASLFVEQGDVMNSHIGEFRLPAASMSAFDICS---VLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLII  446 (609)
Q Consensus       371 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~  446 (609)
                      ..+. |++.++...-   +..    +..+..++..+.+.   =++...+..++    .+|.+       ++..+.++..+
T Consensus       237 ~vfdqqf~~y~~~~f---~~~----~~g~~~~G~l~s~~v~~E~~~m~~~p~l----i~rig-------~k~~Lllag~i  298 (412)
T PF01306_consen  237 DVFDQQFPIYFASFF---QSA----GQGNQMYGYLWSVQVFLEALMMFFSPWL----INRIG-------AKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHTS---SSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh---ccc----ccChhHHhHHHHHHHHHHHHHHHHHHHH----HHhcC-------hHhHHHHHHHH
Confidence            4443 4333332211   100    11122222222222   22333333333    45543       55678888888


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH-HHHHHHHH
Q 039271          447 GMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC-MASISFGN  525 (609)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~lg~  525 (609)
                      +++-...++..                .+.+++++.-.++++-..+...+..-|+.+.+|++..++...+. +...++|.
T Consensus       299 ~~iRi~~~~~~----------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~  362 (412)
T PF01306_consen  299 MAIRIIGSGFA----------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGI  362 (412)
T ss_dssp             HHHHHHHHHT------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHhhh----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence            99998888774                36678888889999999999999999999999999999999986 57788999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccc
Q 039271          526 YVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWY  582 (609)
Q Consensus       526 ~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~  582 (609)
                      .+.+.+.|.+.+..                ++...|++.+++.+...++-.+..++.
T Consensus       363 ~i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  363 IILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            98888888776532                334468888888777776666655543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.68  E-value=6.4e-14  Score=143.07  Aligned_cols=139  Identities=15%  Similarity=0.122  Sum_probs=121.5

Q ss_pred             HHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039271           71 AFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKP  150 (609)
Q Consensus        71 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (609)
                      ........+.+.+++.++++..+++++...+..++.++.++.|++.+|+ |+|+.+++|+.++++|+.+..-+       
T Consensus        27 ~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pA-------   98 (422)
T COG0738          27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPA-------   98 (422)
T ss_pred             HHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhh-------
Confidence            3344556777788999999999999999999999999999999999996 99999999999999999877644       


Q ss_pred             CCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhh
Q 039271          151 TGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTIL  230 (609)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  230 (609)
                                  ....++..++.+.++.+.|.+..+.+.+++++.+.+++.      -..-+++.+..+.+|+.++|.++
T Consensus        99 ------------a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g  160 (422)
T COG0738          99 ------------ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLG  160 (422)
T ss_pred             ------------hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHH
Confidence                        123668889999999999999999999999999999876      44557888889999999999999


Q ss_pred             hhccc
Q 039271          231 VYYED  235 (609)
Q Consensus       231 ~~l~~  235 (609)
                      +++..
T Consensus       161 ~~lil  165 (422)
T COG0738         161 SSLIL  165 (422)
T ss_pred             HHHHH
Confidence            98776

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.67  E-value=5.2e-15  Score=160.03  Aligned_cols=358  Identities=11%  Similarity=0.070  Sum_probs=217.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhh----hccchhHHHH-HHHHHHHHHHHHH
Q 039271           66 GLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSD----SYWGRYLTCA-VFQLIFVVGLVLL  140 (609)
Q Consensus        66 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~~~~-~~~~~~~~~~~~~  140 (609)
                      +..++.+.....++..|+++.+|+++..+|.+..+..+..++..|+.|.++|    |+ ||||-.+ .+.+...++..++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            4555555666678899999999999999999999999999999999999999    74 9777655 4555656655554


Q ss_pred             HHHhhh-ccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHH
Q 039271          141 SVLSFL-MIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFL  219 (609)
Q Consensus       141 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  219 (609)
                      ... .| ...              .......+.+..++..++......+..++.+|+.++.++     |.+..++.....
T Consensus        90 f~~-~p~~~~--------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~  149 (428)
T PF13347_consen   90 FSP-PPAGLS--------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFS  149 (428)
T ss_pred             hcc-ccchhh--------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHH
Confidence            432 11 100              001223345666667888899999999999999886432     888888888888


Q ss_pred             hhhHHHHhhhhhhccccc-------chhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhccccc
Q 039271          220 NVGSLFSNTILVYYEDSG-------KWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVV  292 (609)
Q Consensus       220 ~ig~~~~~~i~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      ++|.++...+.+.+.+..       +|++..++.+++.++..++.....|+..++.++.++..+                
T Consensus       150 ~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~----------------  213 (428)
T PF13347_consen  150 MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKIS----------------  213 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccc----------------
Confidence            888876666665544322       578777777666665555444433330000000000000                


Q ss_pred             CCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHH
Q 039271          293 PANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVV  372 (609)
Q Consensus       293 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (609)
                                                    +.+               .++.     ..+.|.+.............+..
T Consensus       214 ------------------------------~~~---------------~~~~-----~~~nr~~~~l~~~~~~~~~~~~~  243 (428)
T PF13347_consen  214 ------------------------------LRD---------------SLRS-----LFRNRPFRILLLAFFLQWLAFAL  243 (428)
T ss_pred             ------------------------------ccc---------------chhh-----hcccchHHHHHHHHHHHHhhhhh
Confidence                                          000               0000     00011111111111111111111


Q ss_pred             HhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHH
Q 039271          373 FTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMI  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~  452 (609)
                      ......++...  .+..     ......+.....+..++..++..++    .||+++|+       .+..+.++.+++.+
T Consensus       244 ~~~~~~y~~~~--vl~~-----~~~~~~~~~~~~~~~~v~~~~~~~l----~~r~gk~~-------~~~~~~~~~~~~~~  305 (428)
T PF13347_consen  244 MNTFLPYYFTY--VLGN-----EGLISIFMLIFFVASIVGSPLWGRL----SKRFGKKK-------VYIIGLLLAALGFL  305 (428)
T ss_pred             hhhHHHHHHHH--HhcC-----chhhHHHHHHHHHHHHHHHHHHHHH----HHHcccee-------ehhhhHHHHHHHHH
Confidence            11111111111  0111     1112233334555566666666665    45554442       46777777777777


Q ss_pred             HHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCC-------cchhHHHHHHHHHHHHHHH
Q 039271          453 AAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAP-------DGIKSFGSSLCMASISFGN  525 (609)
Q Consensus       453 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~lg~  525 (609)
                      ++.+..              ..+.+++++..++.+++.+......+++..|..+       ++..|...|++++...++.
T Consensus       306 ~~~~~~--------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~  371 (428)
T PF13347_consen  306 LLFFLG--------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ  371 (428)
T ss_pred             HHHHHH--------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence            766642              1466777888888999988888888888888776       3557999999999999999


Q ss_pred             HHHHHHHHHhhhhcccC
Q 039271          526 YVSSLLVVMVMGITAKG  542 (609)
Q Consensus       526 ~ig~~~~~~i~~~~~~~  542 (609)
                      .++..+.+.+.+..+..
T Consensus       372 ~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  372 GLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHHHHhCcC
Confidence            99999999887766433

>PRK11462 putative transporter; Provisional

Probab=99.67  E-value=1.9e-13  Score=149.00  Aligned_cols=171  Identities=12%  Similarity=0.130  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHH-HHHHHHHHHHH
Q 039271           63 ANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY---WGRYLTCA-VFQLIFVVGLV  138 (609)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~-~~~~~~~~~~~  138 (609)
                      +..+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-++.-|+.|+++||.   +||||-.+ ++.+.+.++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            445556676777778999999999999999999999999999999999999999972   58876655 45566666655


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ++...  |...              .......+.+.-++..+++.....+..++.+|+.++.++     |++..++...+
T Consensus        96 llf~~--p~~s--------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~~~  154 (460)
T PRK11462         96 LAYST--PDLS--------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRFVL  154 (460)
T ss_pred             HHHhC--CCCC--------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHHHH
Confidence            54433  3211              001133344555566788888888889999999875432     88999999999


Q ss_pred             HhhhHHHHhhhhhhcccc-------cchhHHHHHHHHHHHHHH
Q 039271          219 LNVGSLFSNTILVYYEDS-------GKWTLGFLVSLASAVIAL  254 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~-------~g~~~~f~~~~~~~~~~~  254 (609)
                      .++|+.+++.+...+...       .+|+....+.+++.++..
T Consensus       155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            999888877665443332       246655555544443333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.65  E-value=6.4e-14  Score=151.53  Aligned_cols=151  Identities=11%  Similarity=0.100  Sum_probs=125.1

Q ss_pred             HHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCC
Q 039271           84 TRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPL  163 (609)
Q Consensus        84 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (609)
                      .+++++...+.+.+.+++.+++.++.+++|.|.||+ .-.+.+....+...+..++....                    
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--------------------  131 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--------------------  131 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            366788888999999999999999999999999995 86666666655554433333333                    


Q ss_pred             cchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcc------ccc
Q 039271          164 SSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYE------DSG  237 (609)
Q Consensus       164 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~------~~~  237 (609)
                        .+++.+++.|++.|+..+...|....+++.+|.+++      |+.-+++++...++|.++|++++..+.      ...
T Consensus       132 --~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  132 --HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             --hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence              678999999999999999999999999999999999      999999999999999999999988752      346


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271          238 KWTLGFLVSLASAVIALLSYLMGTPG  263 (609)
Q Consensus       238 g~~~~f~~~~~~~~~~~~~~~~~~~~  263 (609)
                      ||||.|++.+++.+...++.++..|.
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEEEecC
Confidence            89999999998877766655554443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=9e-15  Score=148.19  Aligned_cols=146  Identities=14%  Similarity=0.078  Sum_probs=133.7

Q ss_pred             hhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcc
Q 039271           86 VLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSS  165 (609)
Q Consensus        86 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (609)
                      .++-+..++|++.....+...+..++.|.+.||+ |+|-.++.|..+.....+++++.                      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg----------------------  156 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG----------------------  156 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence            4567788999999999999999999999999995 99999999999999999999987                      


Q ss_pred             hhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHH
Q 039271          166 IFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLV  245 (609)
Q Consensus       166 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~  245 (609)
                      .+++.++++|.++|+|.++...+..++++|.||++.+     |++++|..-.++.+|-.+||.++|.+-+..|.+.+|.+
T Consensus       157 ~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  157 NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence            7788999999999999999999999999999999874     89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 039271          246 SLASAVIALLSYLM  259 (609)
Q Consensus       246 ~~~~~~~~~~~~~~  259 (609)
                      .++++++-..+.++
T Consensus       232 L~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  232 LAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99888776655443

>PTZ00207 hypothetical protein; Provisional

Probab=99.64  E-value=1.5e-12  Score=143.65  Aligned_cols=173  Identities=11%  Similarity=0.082  Sum_probs=127.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      +|..+...++.+.+... .|++.. ....+.+++|.+..+.+++.++.. ....+.+++|+++||+ |||+++.++.+++
T Consensus        26 Rw~~lva~~~~~~~~g~-~y~fsv-~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~  101 (591)
T PTZ00207         26 RFALLVLGAFCSICTSF-MYAFNL-ISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVF  101 (591)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            34434433333433333 344443 344678899999999999887744 4456777899999995 9999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.++++++.....                ..+++.+.+.|++.|+|.+...+.....+.++|| ++      ||.+.+
T Consensus       102 ~iG~ll~ala~~~~i----------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~G  158 (591)
T PTZ00207        102 CLGTLLFALTFQEVI----------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVA  158 (591)
T ss_pred             HHHHHHHHHHhcccc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHH
Confidence            999998887621111                1468889999999999999988888899999997 55      999999


Q ss_pred             HHHHHHhhhHHH-HhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 039271          214 YFYFFLNVGSLF-SNTILVYYEDSGKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       214 ~~~~~~~ig~~~-~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  255 (609)
                      +...+.++|+.+ +++..+++.  .+|+..|++.++..++..+
T Consensus       159 i~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        159 IMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence            999999999975 565555554  3577777766655544433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.64  E-value=3.6e-13  Score=135.62  Aligned_cols=341  Identities=14%  Similarity=0.124  Sum_probs=224.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 039271           62 LANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLS  141 (609)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  141 (609)
                      ++..+=-+-.+.++.+.+ .-+++++|+|.+.+|.++++..++..+..++..+|+.|+ |.++.+..++++..+|..+=.
T Consensus        18 vlia~NLR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~   95 (395)
T COG2807          18 VLIAFNLRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRS   95 (395)
T ss_pred             HHHHhccchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHh
Confidence            333333344445554444 457889999999999999999999999999999999995 999999999988888776544


Q ss_pred             HHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhh
Q 039271          142 VLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNV  221 (609)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i  221 (609)
                      ..                       +.+.++.+-.+.|.|.+..+...++++.+.||++       -+..+|+|....++
T Consensus        96 ~~-----------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~  145 (395)
T COG2807          96 LG-----------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGA  145 (395)
T ss_pred             cc-----------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHH
Confidence            32                       3567888888999999999999999999999975       45788999999999


Q ss_pred             hHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhh
Q 039271          222 GSLFSNTILVYYEDSG-KWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELY  300 (609)
Q Consensus       222 g~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  300 (609)
                      |+.+++.+...+.++. ||+....+=+...+++++.++.-..+.  +.+..+...              .          
T Consensus       146 ~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~--~~~~~~~~~--------------~----------  199 (395)
T COG2807         146 GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALRE--QAASIATKL--------------V----------  199 (395)
T ss_pred             HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccc--ccccccccc--------------c----------
Confidence            9999999998888776 799988877777777776665432111  111000000              0          


Q ss_pred             hhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhccccee
Q 039271          301 EVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLF  380 (609)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (609)
                                        ++                  .+-|+        +.......+.+-+.+..+|..+.+.+..+
T Consensus       200 ------------------~~------------------~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~il  235 (395)
T COG2807         200 ------------------SV------------------RKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAIL  235 (395)
T ss_pred             ------------------cc------------------ccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                              00                  00121        00011112223345677888888888877


Q ss_pred             eEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 039271          381 VEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQ  460 (609)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  460 (609)
                      ..++  ++      ....+.+..+..+..+....+...+    .+|..+      .+........++.++++.+.+..  
T Consensus       236 i~~G--~s------a~~aG~llsl~~l~~~~~~ll~P~l----a~R~~n------~r~~~~~~~~~~l~G~~G~~~~P--  295 (395)
T COG2807         236 IDRG--LS------AAEAGSLLSLMQLAQLPTALLIPLL----ARRSKN------QRPLVVLALLLMLVGLVGLLLAP--  295 (395)
T ss_pred             HHcC--CC------HHHhhhHHHHHHHHHHHHHHHHHHH----HHHhcc------cchHHHHHHHHHHHHHHHHHHhh--
Confidence            6643  22      2223333333333333333333333    233211      22345555566666666555531  


Q ss_pred             hhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039271          461 RLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAP-DGIKSFGSSLCMASISFGNYVSSLLVVMVMGIT  539 (609)
Q Consensus       461 ~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~  539 (609)
                                 ....+.|    .++.|+|.+..+|-...++....+ ++..+.-+|+.+..+.+=..+||.+.|.+.|.+
T Consensus       296 -----------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         296 -----------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             -----------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence                       2223333    478899999999999999887665 455667777777777777788999998877644

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.60  E-value=1.7e-14  Score=158.81  Aligned_cols=180  Identities=11%  Similarity=0.107  Sum_probs=132.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      +++.+...+...++.+..+|++..++|.|+++.+|++..+.++......++..++.+++|+++||+ |||+++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            455555455555667788899999999999888999988888888888899999999999999995 9999988877654


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+.+.... .                  ..+...+++++++.+++.+...+....++.|.+|++.      |+++++
T Consensus       327 ~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g  381 (490)
T PRK10642        327 FVLAIPAFILI-N------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALA  381 (490)
T ss_pred             HHHHHHHHHHH-h------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHH
Confidence            44333222210 0                  1235566778888887777767777888899999998      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHh
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      ..+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++
T Consensus       382 ~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        382 AAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            8555566777889999998877544 676666555555555444444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.60  E-value=4.1e-12  Score=134.71  Aligned_cols=365  Identities=15%  Similarity=0.090  Sum_probs=222.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhH-HHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY---WGRYL-TCAVFQLI  132 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~~~~~~~~  132 (609)
                      ..+.--...+..++.+-.+..++..|+++..|+++..+|.+..+.-+.=++.-|+.|.+.||.   +||+| -++++.+.
T Consensus        13 eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip   92 (467)
T COG2211          13 EKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP   92 (467)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence            334444456667777777888999999999999999999999999999999999999999974   47655 55566566


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      +++.+.++...  |...              .+.+..-.++.-.+.++++..+.-+..++.+++.++.++     |.+..
T Consensus        93 ~~i~~~l~F~~--p~~~--------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~  151 (467)
T COG2211          93 FAIVAVLLFIT--PDFS--------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLT  151 (467)
T ss_pred             HHHHHHHHHcC--CCcc--------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHH
Confidence            66666665554  2210              013344555666778899999999999999999776443     88889


Q ss_pred             HHHHHHHhhhHHHHhhhhhhccc-------ccchhHHHHHHHHHHHHHHHHHH-hcCCcceecCCCCC-ChhHHHHHHHH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYED-------SGKWTLGFLVSLASAVIALLSYL-MGTPGYRYVKPCGN-PLPRVAQVFIA  283 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~  283 (609)
                      ++...+.++|.++...+.+.+..       ..||+..-++.++...+..+..+ ..+++..+..+..+ ...+....+..
T Consensus       152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~  231 (467)
T COG2211         152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLL  231 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHH
Confidence            99888888887776555544432       24666665555555444444333 22222211111110 00000000000


Q ss_pred             HHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHH
Q 039271          284 AARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIW  363 (609)
Q Consensus       284 ~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (609)
                      .                                                                  ...|.++..+...
T Consensus       232 ~------------------------------------------------------------------~~Nrp~~~~l~~~  245 (467)
T COG2211         232 I------------------------------------------------------------------FKNRPLLLLLLMN  245 (467)
T ss_pred             H------------------------------------------------------------------HccchHHHHHHHH
Confidence            0                                                                  0111222222222


Q ss_pred             HHHHHHHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHH
Q 039271          364 LCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIG  443 (609)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  443 (609)
                      ++..+..........++....  ++..    ...............+++.++..++    .+|+++|       ..+.++
T Consensus       246 l~~~~~~~i~~s~~~yy~~y~--lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L----~~~~gkk-------~~~~~~  308 (467)
T COG2211         246 LLLFIAFNIRGSIMVYYVTYV--LGDP----ELFAYLLLLASGAGLLIGLILWPRL----VKKFGKK-------KLFLIG  308 (467)
T ss_pred             HHHHHHHHHHhhhhheeEEEE--cCCh----HHHHHHHHHHHHHHHHHHHHhHHHH----HHHhchH-------HHHHHH
Confidence            223322233333333444322  2221    2223333333334444444555554    3444432       357778


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcC-------CcchhHHHHHH
Q 039271          444 LIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQA-------PDGIKSFGSSL  516 (609)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-------p~~~r~~~~g~  516 (609)
                      .++.+++.+.+.+..              ..+..+.++..++.++|.+...+..++++.+..       -.+..|...|.
T Consensus       309 ~~~~~i~~~~~~f~~--------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~  374 (467)
T COG2211         309 LLLLAVGYLLLYFTP--------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG  374 (467)
T ss_pred             HHHHHHHHHHHHhhc--------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence            888888877776642              335566666668888888888888888877644       35567888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhc
Q 039271          517 CMASISFGNYVSSLLVVMVMGIT  539 (609)
Q Consensus       517 ~~~~~~lg~~ig~~~~~~i~~~~  539 (609)
                      ..++.-+|.+++..+.+++....
T Consensus       375 ~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         375 MTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            88889999999999999988765

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=3.2e-11  Score=131.00  Aligned_cols=86  Identities=16%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcc
Q 039271          475 SIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNT  554 (609)
Q Consensus       475 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~  554 (609)
                      +.+.+.+..++.|+..+...+.+-++..++.|++..+...|++.+.+...+.+||.+.+.+.+.+++             
T Consensus       379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~-------------  445 (477)
T PF11700_consen  379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS-------------  445 (477)
T ss_pred             cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------
Confidence            3444555557888999999999999999999999999999999999999999999999999876622             


Q ss_pred             chhhHHHHHHHHHHHHHHHHH
Q 039271          555 GHMDRFYFLLAVLTAFDFVIY  575 (609)
Q Consensus       555 ~~~~~~f~~~a~~~~v~~v~~  575 (609)
                        ...-+....++.+++++++
T Consensus       446 --~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  446 --QRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             --chhHHHHHHHHHHHHHHHH
Confidence              1223555566666665555

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.6e-13  Score=140.99  Aligned_cols=178  Identities=20%  Similarity=0.221  Sum_probs=144.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHHHHHHHHH-
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYW-GRYLTCAVFQLIF-  133 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~~~~~-  133 (609)
                      |.+|.+++++++..+.-|++..|.|.|+.|+.|+|..++++..+.+-.+...+++++|++|||++ |||....+...+. 
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999998 7776654433322 


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+.....  |+                  .+..+..+..+++|+...+.+-.+.....|..|++.      -|++.|
T Consensus       332 ~~~~~~~w~~--~~------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~G  385 (448)
T COG2271         332 TASLVLYWLA--PN------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATG  385 (448)
T ss_pred             HHHHHHHHcC--CC------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhc
Confidence            2222222222  22                  356777788888888888888777888899999887      888899


Q ss_pred             HHHHHHhh-hHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          214 YFYFFLNV-GSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       214 ~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +..++.-+ |..++....|++.|.+||...|++..+.++++.+++..
T Consensus       386 f~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         386 FVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             hhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            88888777 99999999999999999999999877776666655443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.49  E-value=1.4e-12  Score=139.46  Aligned_cols=173  Identities=14%  Similarity=0.030  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      .+..+.........++.+..++|.|+++++|.+..+++++.+...++..++.+++|+++||+ |||+.+..+.+...+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~  296 (393)
T PRK15011        218 TLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFY  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            33333333444444555667899999999999999999988888888888999999999995 99998877665544443


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      ..+...                      .+.+.+++.+++.+++.+...+....+..|.+|+ +      |+++.++++.
T Consensus       297 ~~~~~~----------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~  347 (393)
T PRK15011        297 AGMLMA----------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTN  347 (393)
T ss_pred             HHHHHH----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHH
Confidence            333222                      3455566677777777776666677778888874 4      7788999888


Q ss_pred             HHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 039271          218 FLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       218 ~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                      ..++|..++|.++|++.+.+||+..|++.+++.+++++.++..
T Consensus       348 ~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        348 TSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999998999999998888877777766543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.49  E-value=1.6e-10  Score=119.43  Aligned_cols=344  Identities=16%  Similarity=0.153  Sum_probs=201.6

Q ss_pred             HHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccc-----hhHHHHH-HHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 039271           84 TRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWG-----RYLTCAV-FQLIFVVGLVLLSVLSFLMIKPTGCGDGF  157 (609)
Q Consensus        84 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (609)
                      ..|++++..-.+..+....+... ..+..|+.||++ +     ||.-+++ |.+++..+..+.....+....        
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~--------   76 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAE--------   76 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence            45788988888888888877665 688899999996 7     6655554 444555555555554322100        


Q ss_pred             CccCCCc-chhHH--HHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcc
Q 039271          158 ISCKPLS-SIFAA--IFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYE  234 (609)
Q Consensus       158 ~~~~~~~-~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  234 (609)
                       +..+.+ +...+  ...++..+.|+|.+..+.+..++++|..|+++      |++..++.+...-+|.+++.++.+.+.
T Consensus        77 -~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen   77 -SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             -cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence             000000 11222  33444556788888899999999999999998      999999999999999999999999887


Q ss_pred             cccch-hHHHH---HHHHHHHHHHHHHHhcCCcceecC-CCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccc
Q 039271          235 DSGKW-TLGFL---VSLASAVIALLSYLMGTPGYRYVK-PCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAI  309 (609)
Q Consensus       235 ~~~g~-~~~f~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~  309 (609)
                      +.+.. |..-.   .+.+..++.++..+-..++.++.. ..+++..                                  
T Consensus       150 ~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~----------------------------------  195 (403)
T PF03209_consen  150 DPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRP----------------------------------  195 (403)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCc----------------------------------
Confidence            77653 22222   222333334444443333322211 0000000                                  


Q ss_pred             cCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEecccccc
Q 039271          310 KGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNS  389 (609)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (609)
                                  ++.+.               |+.+..  -++.++++.+  +++....+.....-..++   -+..++.
T Consensus       196 ------------~f~~a---------------~~~~~~--~~~a~~f~~f--l~l~t~a~~~QD~iLEPy---gg~Vfgm  241 (403)
T PF03209_consen  196 ------------PFREA---------------WRQVWA--SPQARRFFVF--LFLGTLAFFMQDVILEPY---GGEVFGM  241 (403)
T ss_pred             ------------cHHHH---------------HHHHHh--CCChhHHHHH--HHHHHHHHHhhHHHcCCc---hhHHcCC
Confidence                        00000               000000  0111222222  111222222211111111   1111111


Q ss_pred             cccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 039271          390 HIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGE  469 (609)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  469 (609)
                      ..    -.+..+...-..+.++...+.++..   .+|..       +.....+|.....+++.......           
T Consensus       242 sv----~eTT~Lta~~~~G~L~G~~~~g~~l---~~~~~-------~~~~a~~G~~~~~~~f~lii~a~-----------  296 (403)
T PF03209_consen  242 SV----GETTRLTAFWGGGTLLGMLLAGFLL---SRRLG-------KKRTAALGCLLGALAFALIILAG-----------  296 (403)
T ss_pred             CH----HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCC-------chHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            11    1123344455555566555555542   23322       22345567777777766655432           


Q ss_pred             CcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039271          470 KASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGIT  539 (609)
Q Consensus       470 ~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~  539 (609)
                        ...+.+.+....+++|++.+.+.....+...+.++++..|..+|.|-.++.++..++..+.+.+.|..
T Consensus       297 --~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  297 --PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             --hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12245667788899999999999999999999999999999999999999999999988888887754

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09952 shikimate transporter; Provisional

Probab=99.47  E-value=2.5e-12  Score=139.61  Aligned_cols=182  Identities=16%  Similarity=-0.001  Sum_probs=132.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      +++.+..++...++..+.+|...++.+.|+++.+|++......+.........++.++.|+++||+ ||||++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence            344444444556677788888889999999989999887766666667777888899999999995 9999988876655


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+.+.... ..                 ......+.+..++.+++.+...+..+++++|.+|++.      |+++.+
T Consensus       327 ~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g  382 (438)
T PRK09952        327 TLSAFPFFMAL-EA-----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAG  382 (438)
T ss_pred             HHHHHHHHHHH-Hc-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHh
Confidence            44433332220 00                 0223344445566678888888888999999999988      888888


Q ss_pred             HH-HHHHhhhHHHHhhhhhhccccc--chhHHHHHHHHHHHHHHHHHHhc
Q 039271          214 YF-YFFLNVGSLFSNTILVYYEDSG--KWTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       214 ~~-~~~~~ig~~~~~~i~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                      +. ..+..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+..
T Consensus       383 ~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        383 VGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            84 4455689999999999997743  48888888777777776665544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=1.8e-12  Score=141.81  Aligned_cols=177  Identities=13%  Similarity=0.052  Sum_probs=134.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.++.+.+..++....+++...|+|.|+++++|++..++++......++..++.+++|+++||+ |||+.+.....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4577777778888888888889999999999999999999999999999999999999999996 999887665444433


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +..++.+.  ..                  .+.....+.+++.|++.............|.+|++.      |+++.|+.
T Consensus       337 ~~~~~~~~--~~------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~  390 (467)
T PRK09556        337 IFTLGVYQ--HA------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIK  390 (467)
T ss_pred             HHHHHHHH--hc------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHH
Confidence            33222221  00                  234445566666665443333333456679999988      99999999


Q ss_pred             HHHHhh-hHHHHhhhhhhccc------------ccchhHHHHHHHHHHHHHHHHHHh
Q 039271          216 YFFLNV-GSLFSNTILVYYED------------SGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       216 ~~~~~i-g~~~~~~i~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +...++ |+.++|.+.|++.+            ..||+..|++.+++.+++++..+.
T Consensus       391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            999887 77999999999999            578999999887777777655543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.44  E-value=1.1e-12  Score=139.04  Aligned_cols=172  Identities=16%  Similarity=0.059  Sum_probs=132.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      ++.++......++....++....+++.|+++++|.+..+.+.......+...++.+++|+++||+ |||+.+..+..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~  296 (394)
T TIGR00883       218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAA  296 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            34466666777777888888889999999888999999999999999999999999999999995 99998876554443


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +...........                  ..+.+.+++..++.+++.+...+...+++.|.+|+++      |+++.++
T Consensus       297 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~  352 (394)
T TIGR00883       297 LLAVPLLMALLD------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASL  352 (394)
T ss_pred             HHHHHHHHHHhc------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeee
Confidence            332211111000                  1235566667777888888888999999999999988      8888887


Q ss_pred             -HHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHH
Q 039271          215 -FYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAV  251 (609)
Q Consensus       215 -~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~  251 (609)
                       ++....+|+.++|.++|++.+..| |++.+++.+++.+
T Consensus       353 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       353 AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence             456667899999999999999888 8877766655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.43  E-value=2.2e-11  Score=126.11  Aligned_cols=387  Identities=9%  Similarity=-0.015  Sum_probs=214.3

Q ss_pred             HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 039271           77 VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDG  156 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (609)
                      .....|.++.+| +...+-|...+|.+.+....+.+-|+.|++ |-|....++..+..+|..+=.++..|...       
T Consensus        65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~p~v~-------  135 (480)
T KOG2563|consen   65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSLPFVP-------  135 (480)
T ss_pred             hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccCcccc-------
Confidence            445567777778 667778899999999999999999999995 99999999999999999888887655322       


Q ss_pred             CCccCCCcchhHH--HHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcc
Q 039271          157 FISCKPLSSIFAA--IFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYE  234 (609)
Q Consensus       157 ~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  234 (609)
                               +.++  +.+.+..+.+...-.......-+.+-+|++++      |..+..+-.+++.+|..+|-++.+.+.
T Consensus       136 ---------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  136 ---------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             ---------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceec
Confidence                     2334  66677777766666655555566677899988      888888777777777777776666665


Q ss_pred             ccc------chhH--HHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCc
Q 039271          235 DSG------KWTL--GFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPE  306 (609)
Q Consensus       235 ~~~------g~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~  306 (609)
                      .+.      .|..  .|+...++..+.++...+.+++.++.||..+....                              
T Consensus       201 ~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~------------------------------  250 (480)
T KOG2563|consen  201 PSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL------------------------------  250 (480)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh------------------------------
Confidence            433      3543  34434444333333344444433333332211000                              


Q ss_pred             ccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEeccc
Q 039271          307 SAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDV  386 (609)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (609)
                                  ++.++.....                   .-..+++.++.++........|+..+..+-..+..  .+
T Consensus       251 ------------~~~~f~~si~-------------------~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~--sg  297 (480)
T KOG2563|consen  251 ------------QDASFPKSIK-------------------SCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP--SG  297 (480)
T ss_pred             ------------hcCcHHHHHH-------------------HHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc--cc
Confidence                        0000111000                   00011122222222222222333332211111111  11


Q ss_pred             ccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 039271          387 MNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYIS  466 (609)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  466 (609)
                      .+      +..++.+.....+..++.+.+.+.+.|+. |+         .+..+.+-.....++..++....        
T Consensus       298 Y~------~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~---------fk~~~~v~~~~~~v~~~~l~~~t--------  353 (480)
T KOG2563|consen  298 YE------GVFAGYIGALMIVAGMLGALASGIIADKT-KK---------FKLTTLVLYLFALVGTLMLLTCT--------  353 (480)
T ss_pred             CC------ccccchhHHHHHHHHHHHHHHHHhhhhhh-hh---------HHHHHHHHHHHHHHHHHHHHHhh--------
Confidence            11      12344444444444455555544443322 11         11222222222233312222211        


Q ss_pred             CCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 039271          467 PGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPG  546 (609)
Q Consensus       467 ~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~  546 (609)
                          ...-+.++.+....+.|..+....|...++..|..=+...++..|+.++.+++-+.+-..+.+...+..+.   ++
T Consensus       354 ----~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~---~~  426 (480)
T KOG2563|consen  354 ----LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGP---PG  426 (480)
T ss_pred             ----ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCC---CC
Confidence                11224455666667788888888899999999988778889999999988777766555555544332110   11


Q ss_pred             CCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccccccCCch
Q 039271          547 WIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLDED  590 (609)
Q Consensus       547 ~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~  590 (609)
                      |-         ...-+.++..+++.+++..+..+.+++.+.|+.
T Consensus       427 ~~---------~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~  461 (480)
T KOG2563|consen  427 NT---------FPANIFLTVSALLGAILVAFFRPDYRRLRAEAG  461 (480)
T ss_pred             CC---------ccchhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence            10         111245566667777777777777776655543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.41  E-value=7.4e-12  Score=132.37  Aligned_cols=180  Identities=17%  Similarity=0.050  Sum_probs=130.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHH-HHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTC-AVFQLIFV  134 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~~  134 (609)
                      +.++..++..++....++....+++.|+.+.+|.+..+.+++.+...++..++.+++|+++||+ |||+.. ........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4566677777888888888889999999999999999999999999999999999999999995 988621 11111111


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+...+.....               ....+.+.......+.+.+.+ ..+...++++|.+|+++      |++..++
T Consensus       294 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~  351 (399)
T TIGR00893       294 IAGLVLSLLMFAT---------------NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGL  351 (399)
T ss_pred             HHHHHHHHHHHHh---------------ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHH
Confidence            2211111110000               000223333333333344444 78899999999999988      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  258 (609)
                      ++...++|..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus       352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888 99999888877766665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=7.9e-12  Score=133.71  Aligned_cols=170  Identities=15%  Similarity=0.132  Sum_probs=134.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhh
Q 039271           67 LATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFL  146 (609)
Q Consensus        67 ~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~  146 (609)
                      +..++++....+++.|+.+ .|.  .+.++..+.+.++..++.++.|+++||+ ||||.+..+..+..++.+++...   
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---  299 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA---  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh---
Confidence            3455566666788888764 455  3456667788888899999999999995 99999988887777776655554   


Q ss_pred             ccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHH
Q 039271          147 MIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFS  226 (609)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~  226 (609)
                                         ++.+.+++..++.|++.+...+.......|.+|+++      |++.+++++...++|..++
T Consensus       300 -------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~  354 (399)
T PRK05122        300 -------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGIT  354 (399)
T ss_pred             -------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                               345666777888999999888888888889888877      9999999999999999999


Q ss_pred             hhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecC
Q 039271          227 NTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVK  268 (609)
Q Consensus       227 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  268 (609)
                      |.+.|++.+..||++.|++.+++.+++++..+..+++.+++.
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (399)
T PRK05122        355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAV  396 (399)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence            999999999899999999988887777776665555444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.41  E-value=8.7e-12  Score=131.80  Aligned_cols=161  Identities=12%  Similarity=0.022  Sum_probs=127.7

Q ss_pred             HHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039271           69 TLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMI  148 (609)
Q Consensus        69 ~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  148 (609)
                      .........+++.|+.+++|.+..+.+++.........++.+++|+++||+ |||+++..+.++..+........     
T Consensus       212 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-----  285 (375)
T TIGR00899       212 WGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD-----  285 (375)
T ss_pred             HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH-----
Confidence            333444556788899889999999999988888778888899999999996 99999888766544444333333     


Q ss_pred             CCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhh
Q 039271          149 KPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNT  228 (609)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~  228 (609)
                                       ++.+.+.+.+++.+++.+...+....+..|.+|+ +      +++..++++...++|..++|.
T Consensus       286 -----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~  341 (375)
T TIGR00899       286 -----------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGS  341 (375)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHH
Confidence                             3456666777788888888888888888898875 3      558899999999999999999


Q ss_pred             hhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          229 ILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       229 i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      ++|++.+..||+..|++.+++.+++.++...
T Consensus       342 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       342 VGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            9999999899999999988887777766544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=4.1e-12  Score=133.76  Aligned_cols=169  Identities=18%  Similarity=0.141  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      .+.+....++..........+.+.|. +++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence            34444444444444444555666665 56889988999999999999999999999999995 99999998888777776


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      +++...  +.                  .+...++...++.+++.+...+..+.++.|.+|+++      |++..++++.
T Consensus       285 ~~~~~~--~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~  338 (377)
T TIGR00890       285 AAMLFI--PM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYT  338 (377)
T ss_pred             HHHHHc--cc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHH
Confidence            655544  11                  122334455667788888888888889999999988      9999999999


Q ss_pred             HHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHH
Q 039271          218 FLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIAL  254 (609)
Q Consensus       218 ~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~  254 (609)
                      ..++|..++|.+.|.+.+..||++.|++.+++.++++
T Consensus       339 ~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       339 AKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999988877665543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.40  E-value=1.5e-11  Score=131.87  Aligned_cols=171  Identities=13%  Similarity=-0.025  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      +.+....++....++.+..++|.|+.+ .|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+.+...++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            333344445555666777888888865 799999999999999999999999999999995 999998876655555444


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      .+...                      .+.+.+.+..++.|++.++..+...++..|.+|+++      |++..++++..
T Consensus       301 ~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~  352 (406)
T PRK11551        301 ALAAA----------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAV  352 (406)
T ss_pred             HHHhc----------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHh
Confidence            33333                      234455566667788777788888999999999988      99999999999


Q ss_pred             HhhhHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHHHHh
Q 039271          219 LNVGSLFSNTILVYYEDSG-KWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .++|..++|.+.|++.+.. +|...++....+.+++.++.+.
T Consensus       353 ~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        353 GRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             hhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998865 4556666665555555554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=1.3e-11  Score=128.48  Aligned_cols=173  Identities=25%  Similarity=0.310  Sum_probs=149.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYL-TCAVFQLIFVV  135 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~  135 (609)
                      .++...+..++..........+.+.|+.+.+|.+..+.++......++..++.++.|+++||+ |||+ .+..+.++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            344455556666666777778888888887799999999999999999999999999999996 9999 99999888888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+.+...                      .+.+...+..++.+++.+...+...+++.|.+|+++      |++.++.+
T Consensus       255 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  306 (352)
T cd06174         255 GLLLLALA----------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLF  306 (352)
T ss_pred             HHHHHHHh----------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHH
Confidence            87777665                      446778888999999999999999999999999887      99999999


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      +...++|..++|.+.+.+.+..+|+..|++.++..+++.+...
T Consensus       307 ~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         307 NTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999989999999998888777766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.38  E-value=1e-11  Score=140.91  Aligned_cols=134  Identities=14%  Similarity=0.040  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHH
Q 039271           97 NVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIY  176 (609)
Q Consensus        97 ~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (609)
                      ...+..++..++.+++|+++||+ |||++++.+.++.+++++++++.                      .+...+++.++
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------~s~~~ll~~~~  656 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------NSESAMIALLC  656 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------ccHHHHHHHHH
Confidence            34556688899999999999995 99999999988888877776665                      33455666677


Q ss_pred             HHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          177 LIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       177 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      +.+++.++..+...++++|++|++.      |++++|+.+....+|+++||.+++.+.+. +...+|++.+++.+++.++
T Consensus       657 l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       657 LFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            7788777888889999999999988      99999999999999999999999987763 4567787777776666555


Q ss_pred             HHhc
Q 039271          257 YLMG  260 (609)
Q Consensus       257 ~~~~  260 (609)
                      .++.
T Consensus       730 ~~~L  733 (742)
T TIGR01299       730 ALKL  733 (742)
T ss_pred             HHhC
Confidence            5443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03699 putative transporter; Provisional

Probab=99.37  E-value=1.3e-11  Score=132.11  Aligned_cols=171  Identities=12%  Similarity=0.035  Sum_probs=132.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.++.+.+..++....++++..++|.|+++++|++..++++..+.+.++..++.+++|+++||+ +||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            3455555666666677788889999999999999999999999999999999999999999995 999988877665555


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      ...++...                      .+...+.+..++.|++.+...+...+...|..|.+       ++...++.
T Consensus       284 ~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~  334 (394)
T PRK03699        284 LMYLFVNT----------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFI  334 (394)
T ss_pred             HHHHHHHc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHH
Confidence            44433332                      23344455566778877777777777777766533       44567787


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      ....++|+.++|.+.|++.+..|++..|++.+++.+++.+.
T Consensus       335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            88889999999999999999999999998877766666443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.37  E-value=1.1e-11  Score=133.56  Aligned_cols=174  Identities=12%  Similarity=0.053  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhhCCc--------hhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 039271           60 ILLANQGLATLAFFGVGVNLVLFLTRVLQQE--------NANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQL  131 (609)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~  131 (609)
                      .+++..++..........+++.|+.+ .|.+        ....+.+.++..+...++.++.|+++||+ |||+++..+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~  289 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV  289 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            34444444444444444677788764 4543        35678899999999999999999999995 99999999998


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +..++..++... .+.                 ..+.+.+++..++.|++.+...+....+++|.+|+++      |++.
T Consensus       290 ~~~v~~~l~~~~-~~~-----------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~  345 (418)
T TIGR00889       290 AWALRFGFFAYG-DPE-----------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASA  345 (418)
T ss_pred             HHHHHHHHHHHc-Ccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence            877776555542 000                 1234567778888999999888888999999999888      9999


Q ss_pred             HHHHH-HHHhhhHHHHhhhhhhcccc------cchhHHHHHHHHHHHHHHHHHHh
Q 039271          212 FCYFY-FFLNVGSLFSNTILVYYEDS------GKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       212 ~~~~~-~~~~ig~~~~~~i~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +++++ ...++|..+||.++|++.+.      +||+..|.+.+++.+++.+.++.
T Consensus       346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99987 56789999999999999886      46999998887776665554433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.37  E-value=1.9e-11  Score=130.85  Aligned_cols=165  Identities=13%  Similarity=0.058  Sum_probs=128.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhCCchh---hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 039271           66 GLATLAFFGVGVNLVLFLTRVLQQENA---NAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSV  142 (609)
Q Consensus        66 ~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  142 (609)
                      +........+.++++.|+.+..+....   ..+.+.++..++..++.++.|+++||+ |||+.+..+.++..++.+....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  307 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence            333344445567778887764442221   245556667788888999999999995 9999999888776665555444


Q ss_pred             HhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhh
Q 039271          143 LSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVG  222 (609)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  222 (609)
                      .                      .+.+.+++.+++.|++.+...|...+++.+..|+++      |++.+++++...++|
T Consensus       308 ~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g  359 (408)
T PRK09874        308 V----------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIG  359 (408)
T ss_pred             h----------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHH
Confidence            3                      346677788888999999999999999989888887      899999999999999


Q ss_pred             HHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          223 SLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       223 ~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      ..+||.++|++.+.+||++.|++.+++.+++.+..+.
T Consensus       360 ~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        360 NVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887777665544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.35  E-value=1.9e-11  Score=130.43  Aligned_cols=161  Identities=15%  Similarity=0.070  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      +..++....+.+...+....+++.|+.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  318 (405)
T TIGR00891       240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHH
Confidence            33344444555556666778899999989999999999999999999999999999999995 99999888776543322


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      ......                     ..+.+.+.+..++.+++.+...+...+++.|.+|+++      |++.+|+.+.
T Consensus       319 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~  371 (405)
T TIGR00891       319 IPVFAI---------------------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQ  371 (405)
T ss_pred             HHHHHh---------------------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHH
Confidence            211111                     1334555556566677777777788899999999988      9999999999


Q ss_pred             HHhhhHHHHhhhhhhcccccc-hhHHHHHH
Q 039271          218 FLNVGSLFSNTILVYYEDSGK-WTLGFLVS  246 (609)
Q Consensus       218 ~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~  246 (609)
                      ..++|+.++|.+.|++.+..| |+..+...
T Consensus       372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       372 LGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            999999999999999999888 87666543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.34  E-value=7.5e-12  Score=111.88  Aligned_cols=133  Identities=17%  Similarity=0.217  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHH
Q 039271           98 VSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYL  177 (609)
Q Consensus        98 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  177 (609)
                      .+.+.++..++.++.|+++||+ |||+.+..+..+..++.+.+...                      .+.+.+.+.+++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~   60 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------SNITVLIIARFL   60 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHH
Confidence            3456678888999999999995 99999999988888777766655                      457778888999


Q ss_pred             HHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 039271          178 IAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      .|++.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+++.+..+|++.|++.++..+++.+..
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988      99999999999999999999999999988899999988877666665554


Q ss_pred             Hh
Q 039271          258 LM  259 (609)
Q Consensus       258 ~~  259 (609)
                      ..
T Consensus       135 ~~  136 (141)
T TIGR00880       135 AF  136 (141)
T ss_pred             hh
Confidence            43

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.32  E-value=6.1e-11  Score=126.80  Aligned_cols=176  Identities=11%  Similarity=0.037  Sum_probs=135.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ..+.+.+..++.+..++++.++++.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..++
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~  283 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG  283 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence            34555556666777888888999999976 799999999999999999999999999999995 9999998887766666


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCC-CChhhhhccchhHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDE-SKPKERQSKTLFFCYF  215 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~  215 (609)
                      ..++...  +                   .+...+  ...+.|++.+...|.......+.+++ ++      |++.+++.
T Consensus       284 ~~~~~~~--~-------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~  334 (393)
T PRK09705        284 FCGFIWL--P-------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFM  334 (393)
T ss_pred             HHHHHHc--c-------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHH
Confidence            5544322  1                   111112  22456778888888777777787764 44      88899999


Q ss_pred             HHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMGTPG  263 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  263 (609)
                      +...++++.++|.+.|++.+..| |+..|++.+++.+.+.++.+...++
T Consensus       335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999876 7888888777777666665554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=7.3e-11  Score=125.70  Aligned_cols=170  Identities=8%  Similarity=-0.090  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.++..++..++.....+...++.+.|+++ +|.+..++|...+...++..++.+++|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            455666666666677777778899999965 899999999999999999999999999999995 999999999999888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      ...++...                      ++.+.+++...+.|+..+...+....++.+. |+++      |+++.+++
T Consensus       283 ~~~~~~~~----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~  333 (382)
T TIGR00902       283 RWAIIGAI----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALY  333 (382)
T ss_pred             HHHHHHhH----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHH
Confidence            88777766                      6678888899999999999999999999987 7766      78888887


Q ss_pred             H-HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 039271          216 Y-FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       216 ~-~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      + ....+|..++|.++|++.+..|+ ..|++.++..+++++..
T Consensus       334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            6 46789999999999999999886 66777777666665444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.31  E-value=2.7e-11  Score=130.63  Aligned_cols=162  Identities=13%  Similarity=0.039  Sum_probs=127.6

Q ss_pred             HHHHHHhhHHHHHHHHHHhh---CCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 039271           68 ATLAFFGVGVNLVLFLTRVL---QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLS  144 (609)
Q Consensus        68 ~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  144 (609)
                      ....+.....+++.|+.+.+   +.+..+.+++.++..+...++.+++|+++||+ |||+.+..+.++..++.+++.+. 
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~-  312 (420)
T PRK09528        235 VACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA-  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc-
Confidence            33333344456777776543   56667789999999999999999999999995 99999998888877777766655 


Q ss_pred             hhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH-HHHHHhhhH
Q 039271          145 FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY-FYFFLNVGS  223 (609)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~  223 (609)
                                           .+.+.+.+.+++.+++.+...+....++.|.+|++.      |++..+. ++...++|.
T Consensus       313 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~  365 (420)
T PRK09528        313 ---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGA  365 (420)
T ss_pred             ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHH
Confidence                                 456777788888888888877777889999999877      7776655 677889999


Q ss_pred             HHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          224 LFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       224 ~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      +++|.+.|++.+..||+..|.+.+++.+++.+..+
T Consensus       366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987776665554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.31  E-value=5.7e-11  Score=129.50  Aligned_cols=177  Identities=13%  Similarity=0.124  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHH-HHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYW-GRYLTC-AVFQLIF  133 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~-~~~~~~~  133 (609)
                      +.++..++..++....+++...++|.|++++.|++..++++....+.++..++.+++|+++||+. |||+.. .....+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            45677777777777788888899999999889999999999999999999999999999999941 344332 2222222


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+.+.+.  +.                  .+.+...+..++.|.+..........+..|.+|++.      |+++.|
T Consensus       333 ~~~~~~~~~~--~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  386 (452)
T PRK11273        333 TIATIVYWLN--PA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAG  386 (452)
T ss_pred             HHHHHHHHHh--cc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHH
Confidence            2322222221  11                  223333344444444333333334456779999988      999999


Q ss_pred             HHHHHHhhhHHH-HhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          214 YFYFFLNVGSLF-SNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       214 ~~~~~~~ig~~~-~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      +.+...++|+.+ +|.+.|++.+..||+..|++.++..+++++...
T Consensus       387 ~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        387 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            999888888665 799999999999999999988877766655544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.31  E-value=2.5e-11  Score=129.01  Aligned_cols=187  Identities=17%  Similarity=0.092  Sum_probs=141.3

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccch-hHHHHH
Q 039271           51 NKGGWKYASILLANQGLATLAFFGVGVNLVLFLTR-VLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGR-YLTCAV  128 (609)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~  128 (609)
                      .+.+||.+++..+.++.....++.+.+..-.|+++ +.+.+.+-.|++++...++.++..|..|+.+.|. +. |+-++.
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli~  107 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLIV  107 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHHH
Confidence            45679999999999999999999888888889874 4677788899999999999999999999999995 75 777888


Q ss_pred             HHHHHHHHHHHH-HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          129 FQLIFVVGLVLL-SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       129 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      +.++.++|.++. ++...|+                  ...+.++++|++.|+|.+.. +..=+++++....++      
T Consensus       108 s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------  162 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------  162 (488)
T ss_pred             HHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------
Confidence            899999999988 5553443                  36889999999999987764 355788888766666      


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhh----hccccc---------chhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILV----YYEDSG---------KWTLGFLVSLASAVIALLSYLMGTPG  263 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~----~l~~~~---------g~~~~f~~~~~~~~~~~~~~~~~~~~  263 (609)
                      |.++++....+..+|..+||.+..    ...+.+         -++.+-|+.+++.++.++.+....++
T Consensus       163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            778887766665666666665543    332211         14566677776666666555444443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.31  E-value=9.4e-11  Score=127.00  Aligned_cols=169  Identities=14%  Similarity=0.032  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 039271           65 QGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLS  144 (609)
Q Consensus        65 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~  144 (609)
                      .++....+|++.+|+|.|+.+.+|.+..+.+...++..++..++.++.|+++||+ |||+++..+.++..+........ 
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~-  329 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSA-  329 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHH-
Confidence            3445777888999999999988999999999988888888899999999999995 99998877655433322211111 


Q ss_pred             hhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHh-hhH
Q 039271          145 FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLN-VGS  223 (609)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-ig~  223 (609)
                      ...                 ..+....+....+..++.+...+..+.+.+|.||++.      |++++|+.+...+ +++
T Consensus       330 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g  386 (432)
T PRK10406        330 LQN-----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFG  386 (432)
T ss_pred             HHc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHH
Confidence            010                 0112222222222223333444566788999999999      9999999766544 445


Q ss_pred             HHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHh
Q 039271          224 LFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       224 ~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      ..+|.+.+++.. .| |...+++.++..+++++..+.
T Consensus       387 ~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        387 GSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             hHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            558888886643 45 656666666666665555444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.30  E-value=6.6e-11  Score=128.28  Aligned_cols=177  Identities=18%  Similarity=0.132  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHH-HHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYW-GRYLTC-AVFQLIFV  134 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~-~~~~~~~~  134 (609)
                      .++.+.+..++....++++.+++|.|+.+++|++..+++...+.+.++..++.+++|+++||+. ++|+.. ....+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            4566666666667777778889999998889999999999999999999999999999999952 222322 22211111


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +....+...  +.                  .+.....+..++.|++............+|.+|++.      |++..|+
T Consensus       324 ~~~~~~~~~--~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  377 (434)
T PRK11663        324 LSVGSLWLM--PF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGF  377 (434)
T ss_pred             HHHHHHHHc--cc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHH
Confidence            111111111  11                  122223333333444333333334556789898877      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .+...++|+.++|.+.|++.+..||+..|++.+++.+++.+..+.
T Consensus       378 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        378 VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888777666554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.30  E-value=1e-10  Score=124.39  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=121.7

Q ss_pred             HHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039271           70 LAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIK  149 (609)
Q Consensus        70 ~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (609)
                      +.+.....++|.|+++ .|.+..++++..+...++..++.++.|+++||+ |||+++..+..+..++.+... .      
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------  284 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------  284 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence            3344445678888865 699999999999999999999999999999996 999999888777666554332 1      


Q ss_pred             CCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhh
Q 039271          150 PTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI  229 (609)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  229 (609)
                                        .........+.+++.+...|...+.+.|..|+++      ++...+.++...++|..+||.+
T Consensus       285 ------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~  340 (381)
T PRK03633        285 ------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSF  340 (381)
T ss_pred             ------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                              1122334556677666778888888999888766      6667777788899999999999


Q ss_pred             hhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          230 LVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       230 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +|++.+++||++.|++.+.+.+++.+..+.
T Consensus       341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        341 TAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999887777666554443

>PRK12382 putative transporter; Provisional

Probab=99.30  E-value=4.2e-11  Score=127.82  Aligned_cols=160  Identities=17%  Similarity=0.186  Sum_probs=129.3

Q ss_pred             HHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 039271           68 ATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLM  147 (609)
Q Consensus        68 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~  147 (609)
                      ....+..+..+.+.|+.+ .|.+  +.++....+.++..++.++.|++.||+ ||||.+..+..+..++.+++...    
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~----  299 (392)
T PRK12382        228 QGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA----  299 (392)
T ss_pred             HHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc----
Confidence            345555566777888764 4554  355666777788889999999999995 99999998888777776665544    


Q ss_pred             cCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHh
Q 039271          148 IKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSN  227 (609)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~  227 (609)
                                        .+.+..++..++.|++.+...+...+.+.|.+|+++      |++..++++...++|..++|
T Consensus       300 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~  355 (392)
T PRK12382        300 ------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSG  355 (392)
T ss_pred             ------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence                              345666778888899988888888888899999888      99999999999999999999


Q ss_pred             hhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          228 TILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       228 ~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .+.|++.+..||+..|.+.+++.+++.+..+.
T Consensus       356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        356 PLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988877777665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.30  E-value=6.1e-11  Score=127.76  Aligned_cols=162  Identities=12%  Similarity=-0.069  Sum_probs=130.6

Q ss_pred             HHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039271           72 FFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPT  151 (609)
Q Consensus        72 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (609)
                      ..++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+.++..++.+++...        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            345667889999888999999999999999999999999999999995 88888888777666666555443        


Q ss_pred             CCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhh
Q 039271          152 GCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV  231 (609)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  231 (609)
                                    ++.+...+..++.|++.+...+...+++.|.+|++.      |++.+++++...++|..+||.+.|
T Consensus       310 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        310 --------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             --------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHH
Confidence                          445566677777888888777788889999999887      999999999999999999999999


Q ss_pred             hcccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          232 YYEDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       232 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      ++.+..|++..++..+++.++..++.....+
T Consensus       370 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        370 GLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999888888776665554444433333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.30  E-value=1.9e-10  Score=122.80  Aligned_cols=172  Identities=12%  Similarity=-0.045  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      +...+..++.....+....+++.|+.+..|.+..+++++.+...++..++.++.|+++||+ |||+.. .+..+..++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~  285 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLL  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHH
Confidence            3333444444555555667888888888899999999999999999999999999999995 987654 44443333333


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ++...                     ..+.+.+.+..++.|++.+...+...+.+.+..| +.      |++++++++..
T Consensus       286 ~l~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~  337 (390)
T PRK03545        286 LLLPA---------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGI  337 (390)
T ss_pred             HHHHH---------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHH
Confidence            22221                     1345666677778888887777777778888766 45      78889999888


Q ss_pred             HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhc
Q 039271          219 LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                      .++|..+||.++|++.+.+|++..|+..+.+.+++++.....
T Consensus       338 ~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        338 FNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888877777665443

>TIGR00897 2A0118 polyol permease family

Probab=99.28  E-value=2.1e-10  Score=123.10  Aligned_cols=176  Identities=13%  Similarity=0.001  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-HHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCA-VFQLIFVV  135 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-~~~~~~~~  135 (609)
                      .++...+..++....+++..++.|.|++ ++|.+..+.+++.+...++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~  300 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI  300 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence            4556666677777888888899998885 5899999999999999999999999999999995 9888764 23333333


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+.+...  +..               ...+.+..++..++.|++.+...+. .+...|..| ++      |+++++++
T Consensus       301 ~~~~l~~~--~~~---------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~~~g~~  355 (402)
T TIGR00897       301 FTLALYYI--PQH---------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGAAMSVL  355 (402)
T ss_pred             HHHHHHHH--HHc---------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHHHHHHH
Confidence            32222221  110               0123555666777778777776554 455667544 46      89999999


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +...++|..++|.+++.+.+.+||...|++.+++.+++.+...+
T Consensus       356 ~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       356 NLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.28  E-value=2.4e-11  Score=117.77  Aligned_cols=136  Identities=14%  Similarity=0.142  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 039271           76 GVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGD  155 (609)
Q Consensus        76 ~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (609)
                      -.-+..+...+.+++.++..++.++|..-..+.+.++|++.||.+|-|..-++-..+..+|.+..+...+          
T Consensus        63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi----------  132 (459)
T KOG4686|consen   63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI----------  132 (459)
T ss_pred             chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH----------
Confidence            3456777777788888899999999999999999999999999889887766666666777776665421          


Q ss_pred             CCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc
Q 039271          156 GFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  235 (609)
                               .+.+|++..+|++.|+|.-....+.+.++..+|..++      .+.++|++....-+|+..--.+.+++.+
T Consensus       133 ---------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  133 ---------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             ---------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHH
Confidence                     2568999999999999988888888999999999998      9999999888888888766666666655


Q ss_pred             c
Q 039271          236 S  236 (609)
Q Consensus       236 ~  236 (609)
                      .
T Consensus       198 ~  198 (459)
T KOG4686|consen  198 T  198 (459)
T ss_pred             H
Confidence            3

>PRK15075 citrate-proton symporter; Provisional

Probab=99.26  E-value=1.9e-10  Score=124.71  Aligned_cols=153  Identities=18%  Similarity=0.136  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH-H
Q 039271           62 LANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVL-L  140 (609)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~-~  140 (609)
                      +...++....++.+..+.|.|+++.+|++..+.++......++..++.+++|+++||+ |||+++..+.++..+.... .
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444556667778889999999988999999999988888999999999999999996 9999887765443322211 1


Q ss_pred             HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH-HH
Q 039271          141 SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF-FL  219 (609)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~  219 (609)
                      ...  ..                 ..+.....+..++.+++.+...+....++.|.+|++.      |+.+.++.+. +.
T Consensus       323 ~~~--~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~  377 (434)
T PRK15075        323 SWL--VA-----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLAT  377 (434)
T ss_pred             HHH--Hc-----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHH
Confidence            111  00                 0122233333444566666667777788999999998      8999888544 44


Q ss_pred             hhhHHHHhhhhhhcccccchh
Q 039271          220 NVGSLFSNTILVYYEDSGKWT  240 (609)
Q Consensus       220 ~ig~~~~~~i~~~l~~~~g~~  240 (609)
                      .+++.++|.+.|++.+..|++
T Consensus       378 ~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        378 AIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHhhhHHHHHHHHHHhcCCc
Confidence            456788999999999988853

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=2.7e-10  Score=125.31  Aligned_cols=173  Identities=15%  Similarity=0.107  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHH-HHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 039271           65 QGLATLAFFGVGVNLVLFLTRVLQQENANAANNVS-KWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVL  143 (609)
Q Consensus        65 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~  143 (609)
                      .++.....+....+.+.|+.+++|++..+.+++.. ...++..++.+++|+++||+ |||+.+..+.++..+..+.+...
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l  309 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL  309 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556678888988889999999999874 55689999999999999995 99998877665545444333221


Q ss_pred             hhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhH
Q 039271          144 SFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGS  223 (609)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  223 (609)
                      ...                  ..+.+.+.+..++..+..|...+...++..+..+++.      +++.+++.+...++|.
T Consensus       310 ~~~------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~  365 (491)
T PRK11010        310 SIT------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALSAVGR  365 (491)
T ss_pred             Hhc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHH
Confidence            100                  0223344445555555555555667888889998887      7788999999999999


Q ss_pred             HHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          224 LFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       224 ~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      .+++.+.|++.+.+||+..|.+.+++.+++++.....++
T Consensus       366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            988889999999999999999988888888776655543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.26  E-value=2.6e-09  Score=110.42  Aligned_cols=106  Identities=13%  Similarity=0.069  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhhCC---ch----hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH-HHHHHHHHHHHHHHHhhhc
Q 039271           76 GVNLVLFLTRVLQQ---EN----ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAV-FQLIFVVGLVLLSVLSFLM  147 (609)
Q Consensus        76 ~~~~~~yl~~~~g~---~~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~-~~~~~~~~~~~~~~~~~~~  147 (609)
                      ..++|+|+++..+.   +.    +..+...++..+..++..|+.|.++|.. |+||-... ...+-++..+.+.+.  |.
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i--~~  111 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFI--PP  111 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHh--CC
Confidence            35678888877654   33    4457778889999999999999999996 86665544 433444444545444  11


Q ss_pred             cCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCC
Q 039271          148 IKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESK  201 (609)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  201 (609)
                                       +.+++...+...+..++.........+++.|..++++
T Consensus       112 -----------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~  148 (438)
T COG2270         112 -----------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN  148 (438)
T ss_pred             -----------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc
Confidence                             1345566666667788888888889999999998876

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.25  E-value=1.7e-10  Score=127.13  Aligned_cols=150  Identities=13%  Similarity=0.054  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 039271           74 GVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGC  153 (609)
Q Consensus        74 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (609)
                      ....++|.|+++++|.+..+++++.+...++..++.+++|+++||+ |||+++..+.++..++.++....  +       
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~--~-------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI--G-------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc--c-------
Confidence            4567899999889999999999999999999999999999999995 99999888766555444333222  0       


Q ss_pred             CCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          154 GDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                                 ..+.+.+.+..++.+....+..+...+++.|.+|+++      |++.+++++...++|+.+||.++|++
T Consensus       363 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        363 -----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             -----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHH
Confidence                       1223333344444333333445667788999999888      99999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHH
Q 039271          234 EDSGKWTLGFLVSLASA  250 (609)
Q Consensus       234 ~~~~g~~~~f~~~~~~~  250 (609)
                      .+.+||+..+...++..
T Consensus       426 ~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        426 AQRLDLGTALASLSFSL  442 (496)
T ss_pred             hccCChHHHHHHHHHHH
Confidence            99999988876555433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.25  E-value=2.2e-10  Score=119.29  Aligned_cols=177  Identities=17%  Similarity=0.113  Sum_probs=142.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .++..++..++...+.|...+|+.+++++..|++...+++++..+.++..++.+++|+++||  +.|+++....++..+.
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~  289 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA  289 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence            56667777777778888888999999999999999999999999999999999999999999  7888888877776666


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      .+.+.+.                     +.+.+...+..++.|+...........-+++ ..++.      ++.+.+++.
T Consensus       290 ~l~l~~~---------------------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~a~sl~~  341 (394)
T COG2814         290 LLALTFT---------------------GASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADLAGSLNV  341 (394)
T ss_pred             HHHHHHh---------------------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHHHHHHHH
Confidence            6555544                     2445666666666777666655555555555 33344      778899999


Q ss_pred             HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271          217 FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPG  263 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  263 (609)
                      ...|+|..+|..++|.+.+++|+....++.++..++++++.+...++
T Consensus       342 aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         342 AAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999998888877655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.25  E-value=3.1e-10  Score=123.43  Aligned_cols=186  Identities=14%  Similarity=0.094  Sum_probs=154.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchh--HHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRY--LTCAVFQLI  132 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~~~~~~~~  132 (609)
                      .|.+...++..++.+-+...+......|.++++|++..+...+..+..+...++.+++|++.||+ |.|  ++++.++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            35667777788888888889999999999999999999999999999999999999999999995 998  888888777


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..+..+...+...+..              ....+.+.+++.-++.|+..|..++..-++.+++.|+++      .+..+
T Consensus       359 ~~~i~~~g~~G~~~~~--------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efF  418 (477)
T PF11700_consen  359 WIIIPLYGLFGFWPSF--------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFF  418 (477)
T ss_pred             HHHHHHHHHHHhhhcc--------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHH
Confidence            6444433333111210              011557778888889999999999999999999999988      88999


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMGT  261 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  261 (609)
                      |+|.+..-..+.+||.+.|.+.+..| .|+.+....++.+++++++...+
T Consensus       419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999876 88999888888888887775543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.24  E-value=6.6e-11  Score=124.68  Aligned_cols=164  Identities=14%  Similarity=0.121  Sum_probs=118.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.++.+.+..++.....+.+..+.+.|+.+.+|.+..+.++..+...++..++.++.|+++||+.+||+...........
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            34566666677777777788889999999999999999999999999999999999999999842334333222111111


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      ...+......+                  ..+.....+..++.|+......+....+..|.+|+++      |++..+++
T Consensus       296 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  351 (379)
T TIGR00881       296 IVSLLVYWLNP------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFV  351 (379)
T ss_pred             HHHHHHHhcCc------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHH
Confidence            11111111001                  1233444455555666555666666788899999988      99999999


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGF  243 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f  243 (609)
                      +...++|+.++|.+.|.+.+.+||++.|
T Consensus       352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       352 GFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            9999999999999999999999998754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.23  E-value=1.7e-10  Score=125.16  Aligned_cols=181  Identities=12%  Similarity=0.052  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .++.+.+..++.....+++.+++|.|+++..|++..++++....+.+...++.+++|+++||+ |+++....+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            456666666666777788889999999988999999999999999999999999999999995 7544333333222221


Q ss_pred             HHHHH-HHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          137 LVLLS-VLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       137 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      .+... +...+.                  .+.+..+...++.|++.............|.+|++.      |+++.|++
T Consensus       331 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  386 (438)
T TIGR00712       331 TIAVIVYWMNPA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT  386 (438)
T ss_pred             HHHHHHHHhcCC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhh
Confidence            11111 110011                  122333333444454433333333456779999888      99999999


Q ss_pred             HHHHhhhH-HHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          216 YFFLNVGS-LFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       216 ~~~~~ig~-~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      +...++|+ .++|.+.|.+.+..||...|++.++..+++.+..+...+
T Consensus       387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888875 689999999999999999998877766666655444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.23  E-value=2.2e-10  Score=124.98  Aligned_cols=172  Identities=12%  Similarity=-0.007  Sum_probs=135.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc-cchhHHHHHHHHHH-
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY-WGRYLTCAVFQLIF-  133 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~-  133 (609)
                      +.++..++..++..++++....+++.|++ ++|.+..+++++.++..++..++.+++|+++||. +++|+...++.... 
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            45666666777777888888889999986 4799999999999999999999999999999983 13444443333222 


Q ss_pred             -HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          134 -VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                       .++.+++...                      .+.+.+++.+++.|++.+...+...+++.|.+|+++      +++.+
T Consensus       320 ~~l~~ll~~~~----------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~  371 (455)
T TIGR00892       320 NGLTHLLCALA----------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAV  371 (455)
T ss_pred             HHHHHHHHHHh----------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHH
Confidence             2222332222                      456777888889999999999999999999999887      89999


Q ss_pred             HHHHHHHhhhHHHHhhhhhhccccc-chhHHHHHHHHHHHHHHHH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSG-KWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~-g~~~~f~~~~~~~~~~~~~  256 (609)
                      ++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+.
T Consensus       372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            9999999999999999999999877 4999999988776665543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.20  E-value=8e-09  Score=111.60  Aligned_cols=162  Identities=21%  Similarity=0.147  Sum_probs=113.5

Q ss_pred             HHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc--cc--hhHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 039271           78 NLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY--WG--RYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGC  153 (609)
Q Consensus        78 ~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (609)
                      ....|+.+++|+++++.....+...+-- ..-++.|.++|.+  +|  ||+-++++.++..++...++..  |..     
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~--~~~-----   82 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL--PAS-----   82 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc--ccc-----
Confidence            3455788899999999887666655444 3456689999995  33  4444444554444444444433  221     


Q ss_pred             CCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          154 GDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                                 ..+.....+..++..+|........-+++.|....+...    |+...+..+....+|++++..++|.+
T Consensus        83 -----------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   83 -----------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             -----------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                       133455566667788888888888899999987554422    77888888999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          234 EDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       234 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      .+..+++..|.+.+++.++..+..+...+
T Consensus       148 ~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  148 LDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            99999999999888776666554444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=3.5e-10  Score=122.99  Aligned_cols=166  Identities=13%  Similarity=0.013  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 039271           75 VGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCG  154 (609)
Q Consensus        75 ~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (609)
                      +..+.+ ++.+++|.+..+.++......++..++.+++|+++||+ |||+.+..+.++..++.+++.+...+...     
T Consensus       303 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  375 (481)
T TIGR00879       303 IMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVT-----  375 (481)
T ss_pred             hHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccC-----
Confidence            334444 44557899998889999999999999999999999995 99999999887777776666533111100     


Q ss_pred             CCCCccCCCc-chhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          155 DGFISCKPLS-SIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       155 ~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                             +.+ ..+...+....+..+.......+....++.|.+|+++      |++..++.+...++|++++|.+.+++
T Consensus       376 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       376 -------GSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             -------CcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   000 0012222222222222222334666778899999888      99999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhc
Q 039271          234 EDSGKWTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       234 ~~~~g~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                      .+..+|++.|++.+++.+++.++....
T Consensus       443 ~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       443 LESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHhcCccceehhHHHHHHHHHHHHhee
Confidence            988899999988887776666655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.19  E-value=4.3e-10  Score=109.21  Aligned_cols=167  Identities=18%  Similarity=0.134  Sum_probs=130.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH-
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF-  133 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~-  133 (609)
                      ...+|.+.+..++...+.+=+.+.-+.++++.+|+|+..++.+.+......+...++.|.++||+ ||+...+.+..+. 
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~t  341 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILT  341 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHH
Confidence            34567666666666666666667778899999999999999999999999999999999999997 9988777766544 


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      ..++..+.+.                        .+.-+.+..+.|+.+.......+.+++-+.|+++      .|++++
T Consensus       342 l~~H~~l~Ft------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTayg  391 (459)
T KOG4686|consen  342 LLGHSGLFFT------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYG  391 (459)
T ss_pred             HHHhhhHHhh------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHH
Confidence            4555555554                        3334566677787777777778899999999888      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccc---hhHHHHHHHHHHHH
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGK---WTLGFLVSLASAVI  252 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g---~~~~f~~~~~~~~~  252 (609)
                      ..+...|+|-.+.|+++|.+.+.-|   |--.|.+....+.+
T Consensus       392 f~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL  433 (459)
T KOG4686|consen  392 FIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMAL  433 (459)
T ss_pred             HHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHH
Confidence            9999999999999999999998754   44456555444433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.17  E-value=5.8e-09  Score=107.76  Aligned_cols=84  Identities=11%  Similarity=0.032  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc---------
Q 039271          166 IFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS---------  236 (609)
Q Consensus       166 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---------  236 (609)
                      .++..++++.++.|.|.+..++..++++++..++++      +.+.+++.+.+..+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            568889999999999999999999999999999887      77889999999999999999999977632         


Q ss_pred             -------cchhHHHHHHHHHHHHHHH
Q 039271          237 -------GKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       237 -------~g~~~~f~~~~~~~~~~~~  255 (609)
                             ..|+++|++.++..++..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3688888865554443333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.17  E-value=3.9e-10  Score=118.25  Aligned_cols=153  Identities=11%  Similarity=0.067  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhH-HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVG-VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      .++.+++..++.+..++... .+.|.|.++.+|.+..+.+++.....++..++.++.|+++||+ |||+.+..+..+..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence            44555555566666666555 6778887777999999999999999999999999999999995 999998887666666


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcch-hHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSI-FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +...+...                      . +.+.+++..++.|++.+...+...+++.|.+|+++      |++..++
T Consensus       290 ~~~~~~~~----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~  341 (365)
T TIGR00900       290 AILVVGLT----------------------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGA  341 (365)
T ss_pred             HHHHHHhh----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence            55555443                      2 36677788888999999999999999999999887      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccc
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGK  238 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g  238 (609)
                      ++...++|..++|.++|++.+.+|
T Consensus       342 ~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       342 QFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999887643

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.16  E-value=4.5e-10  Score=115.90  Aligned_cols=183  Identities=15%  Similarity=0.041  Sum_probs=139.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +..|.+.+..+...-+|.++..+++.|++++++.+..+++.+...+.+...+..+++|+||||+ |.+|++.......++
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~  296 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL  296 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence            4678888888888888899999999999999999999999999999999999999999999996 999988888777777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.......  +..    .         ....+...+....+..++..|.-+.....++...||++       -|...|+.
T Consensus       297 ~~~~l~~~--~~~----~---------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~v  354 (417)
T COG2223         297 AAALLSLF--LTG----F---------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIV  354 (417)
T ss_pred             HHHHHHcc--ccc----c---------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHH
Confidence            66655544  110    0         00123333443333444455555555667788877753       66788899


Q ss_pred             HHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMGT  261 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  261 (609)
                      ....++|+..-|..-+...+..| ++..|++.....+++.+..+...
T Consensus       355 ga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         355 GAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888887 88888888777777666554433

>PRK10504 putative transporter; Provisional

Probab=99.16  E-value=1.1e-09  Score=119.90  Aligned_cols=157  Identities=10%  Similarity=-0.041  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .+...++..++...++.....+.|.|++..+|.++.+.++......++..++.++.|+++||+ |||+++..+.++..++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV  340 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            445555556666666555556777788777899999999999888888888889999999996 9999999888877766


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      ..++...  +.                 ..+.+.+.+..++.|++.+...+....+..+.+|++.      ++..+++.+
T Consensus       341 ~~~~~~~--~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~  395 (471)
T PRK10504        341 SLLFMLV--AL-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLS  395 (471)
T ss_pred             HHHHHhc--cc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHH
Confidence            6555443  10                 1223344455666788888888888899999999887      999999999


Q ss_pred             HHHhhhHHHHhhhhhhcccccch
Q 039271          217 FFLNVGSLFSNTILVYYEDSGKW  239 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g~  239 (609)
                      +..++|..+|+.++|.+.+..|+
T Consensus       396 ~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        396 MIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999988766554

>TIGR00895 2A0115 benzoate transport

Probab=99.16  E-value=3e-10  Score=120.60  Aligned_cols=148  Identities=16%  Similarity=0.065  Sum_probs=114.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +..+.+.+..++....++....++| ++.+++|.+..+.++..+...++..++.+++|+++||+ |||+.+....+ ..+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~  326 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLL-GAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHH-HHH
Confidence            3444555555666677777777887 66678899999999999999999999999999999996 98854443333 222


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      ...++...                     ..+.+..++..++.|++.+...+...+++.|.+|+++      |++.++++
T Consensus       327 ~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~  379 (398)
T TIGR00895       327 FAVLVGST---------------------LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWA  379 (398)
T ss_pred             HHHHHHHH---------------------hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHH
Confidence            22222221                     0335556677788899999999999999999999888      99999999


Q ss_pred             HHHHhhhHHHHhhhhhhc
Q 039271          216 YFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l  233 (609)
                      +...++|..+||.++|++
T Consensus       380 ~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       380 IGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHhHHhc
Confidence            999999999999999875

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.16  E-value=1.2e-09  Score=119.52  Aligned_cols=178  Identities=13%  Similarity=0.055  Sum_probs=124.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH---HHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAV---FQL  131 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~---~~~  131 (609)
                      ++.++.+.+..++....++.+..++|.|+.+.+|++..+.++..++..++..++.+++|+++||+ ++|+....   ..+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            45678888888899999999999999999999999999999999999999999999999999995 65432110   011


Q ss_pred             HHHHHH-----HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhh
Q 039271          132 IFVVGL-----VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQ  206 (609)
Q Consensus       132 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (609)
                      +..++.     .++...  ..                 ..+.....+...+.+.+.+...+.......|..|. .     
T Consensus       339 ~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-----  393 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALP--YL-----------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F-----  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHH--Hc-----------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H-----
Confidence            111111     111111  00                 01233333444445555555555555555566553 4     


Q ss_pred             ccchhHHHHHHHHhhhHHHHhhhhhhccccc---chhHHHHHHHHHHHHHHHHHHh
Q 039271          207 SKTLFFCYFYFFLNVGSLFSNTILVYYEDSG---KWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       207 ~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                       +|...++.+...++|+.++|.+.|++.+..   +|+..|++.++..+++.++...
T Consensus       394 -~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       394 -LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence             889999999999999999999999987643   3888898888777777665544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.15  E-value=6.2e-10  Score=119.82  Aligned_cols=165  Identities=13%  Similarity=0.001  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHH-HHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTR-VLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTC-AVFQLIF  133 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~~~~~  133 (609)
                      +.++...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ +||+.. ....++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            346667777788888889999999999976 3477888899999999999999999999999995 877753 3333333


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++. ++...   .                  .+....+.+..+.++|.....+.......|.+|+++      |+.++|
T Consensus       321 ~~~~-~~~~~---~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g  372 (412)
T TIGR02332       321 AAGW-LLASA---T------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIA  372 (412)
T ss_pred             HHHH-HHHHh---c------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHH
Confidence            3322 11111   0                  111222222233334443334444556677788877      999999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHH
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLAS  249 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~  249 (609)
                      +.+...++|+.++|.+.|.+.+..| |++.|++.++.
T Consensus       373 ~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       373 VINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            9999999999999999999999875 99998877654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.14  E-value=1.7e-09  Score=115.23  Aligned_cols=168  Identities=9%  Similarity=-0.107  Sum_probs=128.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.++..++..++....+.....+++.|++ +.|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+..+.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            34555555555556666666678888986 5899999999999999999999999999999995 999999988887777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+++...                      ++.+.+++..++.|++.+...+....++.+. ++++      +++..+.+
T Consensus       283 ~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~  333 (382)
T PRK11128        283 RWGLMGST----------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALY  333 (382)
T ss_pred             HHHHHHhh----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHH
Confidence            66655544                      5677788888899999888888888887775 4444      56677776


Q ss_pred             H-HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 039271          216 Y-FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       216 ~-~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  255 (609)
                      + ...++|..+||.++|.+.|.+|+ ..|+..+++.+.+++
T Consensus       334 ~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        334 SALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence            5 55677889999999999998887 456666555554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.11  E-value=3e-09  Score=113.48  Aligned_cols=174  Identities=17%  Similarity=0.004  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTG-TVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ++..+...++...+.....++.+.|+.+ .|.+..+++++...... ...++.+++|++.||+ |+|+.+..+.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            3434444455555556666778888875 79999999998888764 5667789999999995 9999998877665333


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCC-CChhhhhccchhHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDE-SKPKERQSKTLFFCYF  215 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~  215 (609)
                      .+..........                ..+....+....+.+++.+...+...+...+..++ +.      +++.++++
T Consensus       288 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~  345 (390)
T TIGR02718       288 ALLWFAQAAFWL----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAV  345 (390)
T ss_pred             HHHHHHHHHccc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHH
Confidence            322221111000                01233344444555666777777777777777665 55      88999999


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  255 (609)
                      +...++|..+||.++|++.+..||+..|++.+++.+++.+
T Consensus       346 ~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       346 QSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999989999999888776666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.11  E-value=7e-09  Score=111.29  Aligned_cols=172  Identities=15%  Similarity=-0.023  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .++...+...+....++....+.|.|+.+++|.+..+.++......++..++.++.|+++||+ |||+.+..+.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344445544555555566667788888888999999999888878888899999999999995 9999999988877777


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      ..++.......                 ..+.+.+.++.++.+++.+...+......... ++++      |++..+.++
T Consensus       295 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~  350 (406)
T PRK15402        295 LLLAALATVIS-----------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMG  350 (406)
T ss_pred             HHHHHHHHHcc-----------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHH
Confidence            77666541111                 12355566777788888887776665554433 3355      899999999


Q ss_pred             HHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIA  253 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~  253 (609)
                      +...+|..+|+.+.+++.+..++....+..++..++.
T Consensus       351 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        351 MLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            9999999999999999988877665555544443333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.11  E-value=2.7e-09  Score=115.11  Aligned_cols=148  Identities=11%  Similarity=-0.011  Sum_probs=107.1

Q ss_pred             HHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039271           70 LAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIK  149 (609)
Q Consensus        70 ~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (609)
                      ...+.+..++|.|+.+ .|.+..+.+...+...++..++.++.|+++||+ |||+.+..+.++..++.++....  +.  
T Consensus       245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~--~~--  318 (426)
T PRK12307        245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI--PQ--  318 (426)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH--cc--
Confidence            3444566788888875 699999999999999999999999999999995 99999988877665544433322  11  


Q ss_pred             CCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhh
Q 039271          150 PTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI  229 (609)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  229 (609)
                                      .....+....+..+.+..+..+..+.++.|.+|++.      |++++|+.+...++|+.++|.+
T Consensus       319 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~  376 (426)
T PRK12307        319 ----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMA  376 (426)
T ss_pred             ----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHH
Confidence                            112112111222222233344566778899999888      9999999999999999999999


Q ss_pred             hhhcccccchhHHHHH
Q 039271          230 LVYYEDSGKWTLGFLV  245 (609)
Q Consensus       230 ~~~l~~~~g~~~~f~~  245 (609)
                      .|++.+..|+....++
T Consensus       377 ~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        377 ATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHHHcccHHHHHHH
Confidence            9999998887654333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.11  E-value=2.7e-09  Score=110.23  Aligned_cols=161  Identities=13%  Similarity=0.013  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHh--hCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRV--LQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      .++..++..++....-.++..|++.|+.+.  +|+++.+.+...+.+..+..++.+++++++||+ |+||++.++.++.+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            444445555555545667788999999854  699999999999999999999999999999995 99999888877666


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.++....                      .+... ..+..+.|++.+.+.|...+...+.+|++..     ++  .++
T Consensus       220 ~~~~l~~~~----------------------~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~a--sai  269 (310)
T TIGR01272       220 LLSIGAALT----------------------HGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRHTS-----QG--SGI  269 (310)
T ss_pred             HHHHHHHHc----------------------CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hh--HHH
Confidence            655433332                      11122 2355578999999999999999998886431     33  344


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLAS  249 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~  249 (609)
                      . ....+|+.+.|.+.|.+.|..|.+.+|++..++
T Consensus       270 ~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       270 L-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             H-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3 456789999999999999989988888765544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.10  E-value=3.8e-09  Score=112.45  Aligned_cols=171  Identities=12%  Similarity=0.021  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      .+..+....+.+.+.+...++++.|+.+.+|.+..+.+++.+...++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            34444444444455555566778888888999999999999999999999999999999995 99999998887777766


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhh-ccCCCCChhhhhccchhHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGA-DQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      +++...  .                   ++.+..++..++.+++.+...+....... +..+++.      ++..  ..+
T Consensus       280 ~~~~~~--~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~  330 (382)
T PRK10091        280 LMLFFF--G-------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQ  330 (382)
T ss_pred             HHHHHH--H-------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHH
Confidence            544332  0                   22334444555555655544444343333 3333332      3332  345


Q ss_pred             HHHhhhHHHHhhhhhhcccc-cchhHHHHHHHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYEDS-GKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      ...++|..+||.++|++.+. .+|++.+.+.++..+++..+..
T Consensus       331 ~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        331 IAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            66789999999999999885 6899999988777666655443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.10  E-value=3e-09  Score=113.78  Aligned_cols=170  Identities=14%  Similarity=0.033  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh---CCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVL---QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      ++..++..++....+.....+.+.|+.+.+   +.+....+.+.++..+...++.+..|++.||+ |||+.+.++.++..
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~  295 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence            344444444444455555567788887665   45566778888888899999999999999995 99999998888777


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++..+....                      .+.+.+.+..++.|++..........+..+.++++.      +++..+.
T Consensus       296 l~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~  347 (396)
T TIGR00882       296 VRIIGSSFA----------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLI  347 (396)
T ss_pred             HHHHHHHhc----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehH
Confidence            766554443                      456667777888888776655555666677777665      6666665


Q ss_pred             -HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          215 -FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       215 -~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                       ++...++|+.++|.++|++.+..||+.+|.+.+++.++..+.
T Consensus       348 ~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       348 GFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence             677899999999999999999999999999988776655543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.10  E-value=2e-09  Score=118.12  Aligned_cols=175  Identities=11%  Similarity=-0.022  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-----HHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYL-----TCAVFQLI  132 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-----~~~~~~~~  132 (609)
                      .+.+.+..++.....+.+..++|.|+.+++|++..+++...+...++..++.+++|+++||+ |||+     .... .+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~-~~~  331 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWAL-WIV  331 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHH-HHH
Confidence            34444444445555566677899999888999999999999999999999999999999995 8762     2221 111


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+.+...  +.                 ..+.+...+..++.+++.+...+...+++.+..| +.      |+...
T Consensus       332 ~~l~~i~~~~~--~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~  385 (476)
T PLN00028        332 QTLGGVFCIWL--GR-----------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVIS  385 (476)
T ss_pred             HHHHHHHHHHh--cc-----------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhh
Confidence            11111111111  10                 0233444445555666655555556666666544 44      88888


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGT  261 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  261 (609)
                      ++.+...++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus       386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            8887777777777776654 22335699999998877777776665543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.09  E-value=1.3e-08  Score=112.75  Aligned_cols=203  Identities=13%  Similarity=0.127  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      -+..++....+......+......+-+.+.++++.++.|++.+.+-++..+...+..+.+-|. -|-|.+-+|.++++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lg  175 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLG  175 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHH
Confidence            334444333343333346666677778899999999999999999999999999999999996 8999999999999999


Q ss_pred             HHHHHHHhhhc-cC--------CCCCCC-----------------CC-CccC--CCcch-hHHHHHHHHHHHHHhhcCch
Q 039271          137 LVLLSVLSFLM-IK--------PTGCGD-----------------GF-ISCK--PLSSI-FAAIFYLSIYLIAFGYGGHQ  186 (609)
Q Consensus       137 ~~~~~~~~~~~-~~--------~~~~~~-----------------~~-~~~~--~~~~~-~~~~~~~~~~l~g~~~~~~~  186 (609)
                      +++.++.-+.. .+        +.+.+.                 .. ..|+  ..... -+.+++++.++.|+|....+
T Consensus       176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~  255 (735)
T KOG3626|consen  176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF  255 (735)
T ss_pred             HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence            98887652110 00        011111                 01 1121  11222 24478888999999999999


Q ss_pred             hhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc------------------ccc-hhHHHHHHH
Q 039271          187 PTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED------------------SGK-WTLGFLVSL  247 (609)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~------------------~~g-~~~~f~~~~  247 (609)
                      +...+++-|...+++      -...+|+.+....+|.++|-++++++..                  +.| ||..|++.+
T Consensus       256 tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g  329 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICG  329 (735)
T ss_pred             cCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHH
Confidence            999999999887776      6688899888888998888888876532                  123 888899998


Q ss_pred             HHHHHHHHHHHhcCCccee
Q 039271          248 ASAVIALLSYLMGTPGYRY  266 (609)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~  266 (609)
                      .+.++..+.++..++.+++
T Consensus       330 ~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  330 ALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHHHhCcccCcc
Confidence            8888888777776666543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.07  E-value=7.1e-08  Score=104.04  Aligned_cols=362  Identities=17%  Similarity=0.104  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhh-hhHHHHHH----HHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENAN-AANNVSKW----TGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~-~~~~~~~~----~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      ..+.+...+.....+........+.....+.+... .+......    .+...+.+++-|.++||| |||..+.+..+..
T Consensus        24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~  102 (463)
T KOG2816|consen   24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGT  102 (463)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHH
Confidence            33344444444444444466666666555544322 34444444    678889999999999997 9999999998887


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHH--HhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIA--FGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      .+..+.+.+.                      .  +.+++   +.+  -+.+...+...++++|....++      |...
T Consensus       103 ~l~~~~~~~~----------------------~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~  149 (463)
T KOG2816|consen  103 ILPALCLLFQ----------------------G--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSS  149 (463)
T ss_pred             HHhHHHHHHH----------------------H--HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHH
Confidence            7777666655                      1  22222   222  2334456677888999988887      9999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCC-ChhHHHHHHHHHHhhccc
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGN-PLPRVAQVFIAAARKWNV  290 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  290 (609)
                      +++.+.....+..++|.+++.+.+..|.-..|.++.+..+++.+......|+...++.... +..              .
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~--------------~  215 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR--------------E  215 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc--------------c
Confidence            9999999999999999999999999999999999998888887766554444222211110 000              0


Q ss_pred             ccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHH
Q 039271          291 VVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYS  370 (609)
Q Consensus       291 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (609)
                      ..|.+                   .......+..+..                  .+  .+..|..+. +.+ .......
T Consensus       216 ~~~~~-------------------~~~~~~~~~~~~~------------------~~--~~~~r~~l~-l~l-~~~~~~~  254 (463)
T KOG2816|consen  216 LTPGS-------------------LDSSHVADAFQSL------------------TK--VGPDRLLLL-LLL-VAFLSSL  254 (463)
T ss_pred             cCCCc-------------------ccchhhhhhhhhh------------------cc--cCCCccchH-HHH-HHHHHHH
Confidence            00000                   0000000000000                  00  011111111 111 1111111


Q ss_pred             HHHhccc-ceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHH
Q 039271          371 VVFTQMA-SLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGML  449 (609)
Q Consensus       371 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~  449 (609)
                      ....... ..+......+......+..--........+..+++.+...+       .++       ..+.+..|+..-.+
T Consensus       255 ~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~-------~l~-------~~~~i~lGl~~~~~  320 (463)
T KOG2816|consen  255 PEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSS-------ILG-------EKRLISLGLLSEFL  320 (463)
T ss_pred             HHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHh-------hhhHhhHHHHHHHH
Confidence            1111111 11111101111110000101111222233333333333322       222       22357889999999


Q ss_pred             HHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHH
Q 039271          450 AMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSS  529 (609)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~  529 (609)
                      ..+++++...                 .|+...............|...+++.....++.+|.++++......+++.+++
T Consensus       321 ~~~~~af~~~-----------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~  383 (463)
T KOG2816|consen  321 QLLLFAFATE-----------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP  383 (463)
T ss_pred             HHHHHHHhcc-----------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence            9888888632                 24545555666677778889999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcc
Q 039271          530 LLVVMVMGITA  540 (609)
Q Consensus       530 ~~~~~i~~~~~  540 (609)
                      .+.+.+...+.
T Consensus       384 ~~~~~i~~~t~  394 (463)
T KOG2816|consen  384 ALYGNIFALTL  394 (463)
T ss_pred             HHHHHHHHHHH
Confidence            99988876553

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.06  E-value=9.6e-09  Score=110.17  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhhCCchhhhhHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 039271           77 VNLVLFLTRVLQQENANAANNVSKWT-GTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGD  155 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (609)
                      .+.+.|+.+++|.+..+.+++.+... ++..++.+++|++.||+ |||+.+..+.++..+..+.+......         
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~---------  299 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT---------  299 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            34455677789999999999886654 46888999999999995 99998877776665554433322110         


Q ss_pred             CCCccCCCcchhHHHHHHHHH----HHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhh
Q 039271          156 GFISCKPLSSIFAAIFYLSIY----LIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV  231 (609)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~----l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  231 (609)
                               ..+.+.+++..+    ..+++.+...+....++.+.+|.++          .+.+....++|..+++.++|
T Consensus       300 ---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        300 ---------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             ---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence                     022344444443    3455566666777777777777544          45555556777776777899


Q ss_pred             hcccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          232 YYEDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       232 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      ++.+.+||+..|.+.+++.++++++.+..++
T Consensus       361 ~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~  391 (402)
T PRK11902        361 YLVEAYGWPGFYLMTVVIALPGLALLWLMRG  391 (402)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998888777666544333

>PRK10054 putative transporter; Provisional

Probab=99.06  E-value=2.3e-09  Score=114.67  Aligned_cols=173  Identities=12%  Similarity=-0.061  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTR--VLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      .++...+..++..+.+.....+.+.|+..  +.+.+....+++.....+......++.|++.||+ ++|+.+..+.++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence            34444444555555544444566666643  3455666677888888777778888999999995 99999988887777


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++...+.+.                     ..+.+.+.++..+.++|.+...|...+++.+..|++.      |++.++.
T Consensus       286 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~  338 (395)
T PRK10054        286 IGLVGFIFS---------------------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSA  338 (395)
T ss_pred             HHHHHHHHc---------------------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhH
Confidence            776655443                     1345556667788899988888888899999999887      7888876


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      .+ ...+|..+||.++|++.|..|....|++.+....++.+...
T Consensus       339 ~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        339 QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            54 56689999999999999999988888887666665555444

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.05  E-value=3e-09  Score=115.08  Aligned_cols=161  Identities=18%  Similarity=0.101  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.++.+++..++...+++....+.+.|.+..++ +....+++.+...++..++.++.|+++||+ |||+++..+.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            345556666666666666655555555554455 456677788888999999999999999995 999999999887777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChh-hhhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPK-ERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~  214 (609)
                      +.+.+.+.                     +.+.+.+.+..++.+++.+...+..+++++|..|.++-+ .++.+|..+++
T Consensus       300 ~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  358 (437)
T TIGR00792       300 GYLIFFFA---------------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV  358 (437)
T ss_pred             HHHHHHHc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence            76655443                     123455666777788999998999999999987743211 01116888999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccch
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKW  239 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~  239 (609)
                      +++...+|..+++.+.|++.+..||
T Consensus       359 ~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       359 RTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999998876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.04  E-value=2.2e-09  Score=117.83  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=126.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.++..++..++..+.+++...++|.|+++.+|.+..++++......++..++.+++|++.||+ |||+++..+.++..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3455556666777788888888999999999999999999999999999999999999999995 999999988887777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +..++.....+.                  .+.+.+....++.|+|.+...+.......+.+|+++      |+.+.+++
T Consensus       334 ~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~  389 (485)
T TIGR00711       334 GFYWRAFTFTPD------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLS  389 (485)
T ss_pred             HHHHHhccCCCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHH
Confidence            776655321111                  234555666778899998888777777788888877      99999999


Q ss_pred             HHHHhhhHHHHhhhhhhcccc
Q 039271          216 YFFLNVGSLFSNTILVYYEDS  236 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~  236 (609)
                      +...++|+.+|+.+.+.+.++
T Consensus       390 ~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       390 NFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998877664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.04  E-value=6e-09  Score=114.63  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=142.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      +..++...++.++....+...+|.+..+.+|.+....|++.+...++..++.++.+++.+|+ ++++.+..+.+++.++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence            33334444444444444556788888899999999999999999999999999999999995 99999988888877777


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      +.+++.                      .+.+...+..++.|++.........+.+.+..|++.      ||+.++++++
T Consensus       299 ~~lal~----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~  350 (524)
T PF05977_consen  299 LLLALS----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQM  350 (524)
T ss_pred             HHHhcc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHH
Confidence            777666                      667788888888999988888888899999999998      9999999999


Q ss_pred             HHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          218 FLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       218 ~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      ..+.+..+|..+.|.+.+.+|.+..+.++++..+++.++..
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888888776655555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.04  E-value=2.1e-07  Score=95.10  Aligned_cols=152  Identities=13%  Similarity=0.064  Sum_probs=109.0

Q ss_pred             HhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCc
Q 039271           85 RVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLS  164 (609)
Q Consensus        85 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (609)
                      +++|++..+++.+.........+..++.|.++||+ |||+..+...+++.+.++.--.                      
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~----------------------  118 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS----------------------  118 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc----------------------
Confidence            57899999999999999999999999999999996 9999999998888887753322                      


Q ss_pred             chhHHHHHHHHHHHHHhhcCchhhhhhh-hhccCCCCChhhhhccchhHHHHH-HHHhhhHHHHhhhhhhcccccc--hh
Q 039271          165 SIFAAIFYLSIYLIAFGYGGHQPTLATF-GADQFDESKPKERQSKTLFFCYFY-FFLNVGSLFSNTILVYYEDSGK--WT  240 (609)
Q Consensus       165 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~~~~i~~~l~~~~g--~~  240 (609)
                       .+++.++++|++.|++......+.-+- +.|.-..+.+++-  .+..++... +.+.+-++.+.+++-++.+..+  ..
T Consensus       119 -~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v  195 (354)
T PF05631_consen  119 -SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV  195 (354)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence             568999999999999999887766553 3343222111111  334444444 3344555666667767766554  47


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Q 039271          241 LGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       241 ~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      .+|..+..+.+++.+++....+
T Consensus       196 aPF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  196 APFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             chHHHHHHHHHHHHHHHHhccc
Confidence            8898888877777665544333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.03  E-value=1.7e-08  Score=106.95  Aligned_cols=163  Identities=10%  Similarity=0.070  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      ++...+...+....++....+.|.|+.+++|.++.+++++.....++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA  286 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            34444444455556666777788888889999999999999999999999999999999995 99999988877777766


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      +++.....+.                 ......+++..++.|++.+...+.......|.+| ++      |++..++++.
T Consensus       287 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~  342 (385)
T TIGR00710       287 VLLEITAILG-----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGT  342 (385)
T ss_pred             HHHHHHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHH
Confidence            6555442111                 0223445555667888888888888888888776 45      7888888777


Q ss_pred             HHhh-hHHHHhhhhhhcccccchhHHHHHH
Q 039271          218 FLNV-GSLFSNTILVYYEDSGKWTLGFLVS  246 (609)
Q Consensus       218 ~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~  246 (609)
                      .... |+..+|+ .+.+.+..+|...+...
T Consensus       343 ~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~  371 (385)
T TIGR00710       343 LRLVLGAIVGYL-VSLIHGNTAWPMSLSCL  371 (385)
T ss_pred             HHHHHHHHHHHH-HHhccccChHHHHHHHH
Confidence            6654 5555554 44555545555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.03  E-value=4.3e-09  Score=116.35  Aligned_cols=170  Identities=15%  Similarity=0.093  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhH------------HHHHHHHHHHHHHhHHHHHhhhccchhHHHHHH
Q 039271           62 LANQGLATLAFFGVGVNLVLFLTRVLQQENANAAN------------NVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVF  129 (609)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~  129 (609)
                      ....++..+.+|++..+.|.+++ +.|++..+.+.            ...+..++..++.+++++++||+ |||++++.+
T Consensus       294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~  371 (502)
T TIGR00887       294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG  371 (502)
T ss_pred             HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence            33445566778888888888875 57876543221            12233445556778899999995 999999888


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccc
Q 039271          130 QLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKT  209 (609)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  209 (609)
                      .++..++.+++.+.....                 ..+ ..+....+...++..+..+..+.+.+|.+|++.      |+
T Consensus       372 ~~~~~~~~~~l~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~  427 (502)
T TIGR00887       372 FFILTVLFFVLGFAYNHL-----------------STH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RS  427 (502)
T ss_pred             HHHHHHHHHHHHHHHHhc-----------------chh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HH
Confidence            877776665555431110                 011 111111111222223345667788899999999      99


Q ss_pred             hhHHHHHHHHhhhHHHHhhhhhhcccc----------cchhHHHHHHHHHHHHHHHHH
Q 039271          210 LFFCYFYFFLNVGSLFSNTILVYYEDS----------GKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       210 ~~~~~~~~~~~ig~~~~~~i~~~l~~~----------~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      ++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.+
T Consensus       428 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       428 TAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999988773          344556666666655554444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.03  E-value=4e-09  Score=116.38  Aligned_cols=154  Identities=10%  Similarity=-0.050  Sum_probs=127.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.+...++..++....+++...+++.|+++.+|.++.+++.......++..++.++.|++.||+ |||+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3455566667777777888888999999999999999999999999999999999999999995 999999888887777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+++.... .                  ..+.+..++..++.|+|.|...+.....+.+..|+++      ++.+.+++
T Consensus       338 ~~~~l~~~~-~------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~  392 (495)
T PRK14995        338 SFYGLAMTD-F------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIE  392 (495)
T ss_pred             HHHHHHHhc-C------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHH
Confidence            766554431 0                  1234455667788899999988888888889899888      89999999


Q ss_pred             HHHHhhhHHHHhhhhhhccc
Q 039271          216 YFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~  235 (609)
                      ++..++|+.+|+.+.|.+.+
T Consensus       393 ~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        393 TMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887754

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.02  E-value=1.1e-08  Score=112.10  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 039271           75 VGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCG  154 (609)
Q Consensus        75 ~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (609)
                      ...+.|. +.++.|.+.....+......+...++.+++|+++||+ |||++++.+.++.+++.+++.......       
T Consensus       290 ~~~~~p~-i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~-------  360 (479)
T PRK10077        290 VLYYAPE-IFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ-------  360 (479)
T ss_pred             HHHHHHH-HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC-------
Confidence            3334444 4456888877777777778888999999999999995 999999999998888777665441111       


Q ss_pred             CCCCccCCCcchhHHHHHHHHHHHHHhhcC-chhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhh--
Q 039271          155 DGFISCKPLSSIFAAIFYLSIYLIAFGYGG-HQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV--  231 (609)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~--  231 (609)
                                .... ....+.++.+.+.+. ..|..+.+++|.+|+++      |+.+.++.+...++|..+++.+.+  
T Consensus       361 ----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        361 ----------APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             ----------cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                      0111 222333344444433 34677899999999888      999999998888888887755554  


Q ss_pred             ----hcccccchhHHHHHHHHHHHHHHHHHHhc
Q 039271          232 ----YYEDSGKWTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       232 ----~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                          ++.+..+|++.|++.++..+++.++.+..
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             HhccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence                44467888888888776666655554443

>TIGR00896 CynX cyanate transporter

Probab=99.00  E-value=6.3e-09  Score=109.49  Aligned_cols=153  Identities=14%  Similarity=0.053  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ..+.+++...+....++....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+-+||+.+..+.++..++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  276 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG  276 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence            44555555566677778888899999875 79999999999999999999999999999999514566666776666666


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      .+.+...                      .+... ....++.|++.+...|...+.+.+..++++.     ++...++.+
T Consensus       277 ~~~~~~~----------------------~~~~~-~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~  328 (355)
T TIGR00896       277 LCGLLFA----------------------PMHGL-WAWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAALSAMAQ  328 (355)
T ss_pred             HHHHHHh----------------------hhhHH-HHHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHHHHHHH
Confidence            6555443                      11111 1234678999999888877777766554321     677788888


Q ss_pred             HHHhhhHHHHhhhhhhcccccc
Q 039271          217 FFLNVGSLFSNTILVYYEDSGK  238 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g  238 (609)
                      ...++|..++|.+.|++.+..|
T Consensus       329 ~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       329 SIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            8888999999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.99  E-value=3.3e-08  Score=105.78  Aligned_cols=167  Identities=8%  Similarity=-0.048  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .++..++..++....+++...++++++.+++|++..+.+.+.....++..++.++.|++.||. +|+ .++.+.++..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~  294 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHH
Confidence            344444444444455555556664555567899999999999999999999999999999994 544 444443333333


Q ss_pred             -HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          137 -LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                       .++....                      .+.+.+.+..++.|++.+...+...+++.+..|+ +      +++..+.+
T Consensus       295 ~~~l~~~~----------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~  345 (394)
T PRK10213        295 ALVLTLWG----------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSIQ  345 (394)
T ss_pred             HHHHHHHh----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHHH
Confidence             3332222                      3456677778888999999898888888888773 3      34556666


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIAL  254 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~  254 (609)
                      ....++|..+||.++|++.+..|++..++..++..++..
T Consensus       346 ~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        346 VAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHH
Confidence            677889999999999999999999888888776544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.98  E-value=2.3e-08  Score=107.73  Aligned_cols=184  Identities=12%  Similarity=0.015  Sum_probs=124.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ..|.+.+..++...+|.++..++|.|+++.+.  .........+..+...+..|++|+|+||+ |+||++.++.+...++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence            45767777777777777777799999887553  33333345556788999999999999995 9999999988776665


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCC---------------
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESK---------------  201 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---------------  201 (609)
                      ....... .|.               ....+++.+.+..+...++.|.-+.....++.+.||+++               
T Consensus       330 ~~~~~l~-lp~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~  393 (462)
T PRK15034        330 SALLFLT-LPG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQ  393 (462)
T ss_pred             HHHHHHH-hcc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHh
Confidence            5433332 121               001345666666655566666667777788888887410               


Q ss_pred             hhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHh
Q 039271          202 PKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       202 ~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .+.|+.-|...|+......+|+++-|.+-|...+..| +...|+...+..+++.++.+.
T Consensus       394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            0111125577778888888999999988777766654 777888777666666555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.97  E-value=9.4e-09  Score=106.32  Aligned_cols=176  Identities=15%  Similarity=0.118  Sum_probs=146.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.+...+++.++.+=+.-.+......|....+|++..+...+.....+...+++++.|+|.||+ |-|+++..++++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            3566666666666666667778888999999999999999999999999999999999999995 999999999998887


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      .++...+.                      .....+++.-.+.|+..|+.++.+=++.+++.|+++      -++.+|+|
T Consensus       331 ~~~~~~~~----------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgly  382 (438)
T COG2270         331 AALYLIFL----------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLY  382 (438)
T ss_pred             HHHHHHHc----------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehh
Confidence            77665554                      224456666677899999999999999999999998      78899999


Q ss_pred             HHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhc
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMG  260 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  260 (609)
                      +...-..+.+||.+.+.+.+.+| -|..+....++.+++++.++..
T Consensus       383 altgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         383 ALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEee
Confidence            99999999999999999988765 6777777777777777665443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.97  E-value=1.3e-08  Score=109.03  Aligned_cols=153  Identities=14%  Similarity=0.054  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 039271           75 VGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCG  154 (609)
Q Consensus        75 ~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (609)
                      ...++|.|+++..+ ++.+.+++.+...+.......+.+++.||.++.++.+..+.++..++..++...           
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----------  294 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----------  294 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence            44677888876555 668888888887776665555556666553476777777776666666555544           


Q ss_pred             CCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcc
Q 039271          155 DGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYE  234 (609)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  234 (609)
                                 ++.+.+++..++.+++.+...|...+++.|..|+++      |++.+++++...++|..+||.++|++.
T Consensus       295 -----------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        295 -----------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             -----------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHH
Confidence                       345556666677888888888888999999999988      999999999999999999999999998


Q ss_pred             ccc---c-hhHHHHHHHHHHHHHHHH
Q 039271          235 DSG---K-WTLGFLVSLASAVIALLS  256 (609)
Q Consensus       235 ~~~---g-~~~~f~~~~~~~~~~~~~  256 (609)
                      +..   + ....|++.++..+++.+.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        358 DLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            763   2 345565555555555444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.96  E-value=3.2e-08  Score=104.81  Aligned_cols=167  Identities=14%  Similarity=-0.016  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchh---HHHHH-HHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRY---LTCAV-FQL  131 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~~~~~-~~~  131 (609)
                      |.++.+.+..++....+|++..|+|.|+++ .|++.. .+....+..+...++   .++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            456888888899999999999999999964 677754 555555555544444   57888884 543   33222 222


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +..+....+...                      .+....++...+.+++.....+..+++.+|.+|++.      |+++
T Consensus       266 ~~a~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~  317 (368)
T TIGR00903       266 LIAAFFLALAFE----------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKA  317 (368)
T ss_pred             HHHHHHHHHHHc----------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcc
Confidence            222222222221                      122333444555666677777778899999999999      9999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      .|+.+...++|+..+|.+.+.+..  |....|.+.++..+++.+..+
T Consensus       318 ~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       318 AGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887763  666777777766666655543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.96  E-value=1.4e-08  Score=123.50  Aligned_cols=164  Identities=15%  Similarity=0.039  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchh-hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENA-NAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      .++.+++..++.....+.+..+++.|+.+.+|.+.. ..+++.+...++..++.+++|+++||+ ++++++.++.++.++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence            344444445555555566678889999999999998 999999999999999999999999995 999988888777776


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+++.+.                      .+.+.+++..++.|++.++..+...+++.+.+|++.      |++++++.
T Consensus       312 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~  363 (1146)
T PRK08633        312 SLFLLPTA----------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAAN  363 (1146)
T ss_pred             HHHHHHHh----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHH
Confidence            66666554                      356667777888899999888888999999999988      99999999


Q ss_pred             HHHHhhhHHHHhhhhhhccc-ccchhHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYED-SGKWTLGFLVSLAS  249 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~~  249 (609)
                      ++..++|.++++.+++.+.. .+++...|++.+++
T Consensus       364 ~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        364 NFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999888877776644 23455556554443

>PRK10133 L-fucose transporter; Provisional

Probab=98.95  E-value=2.7e-08  Score=107.94  Aligned_cols=165  Identities=11%  Similarity=0.079  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHH-HHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 039271           61 LLANQGLATLAFFGVGVNLVLFL-TRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVL  139 (609)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~yl-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~  139 (609)
                      ..+..++.....++...|.+.|+ ++.+|+++.++++....+.++..++.+++|++.||+ |||+++..+.++.+++.++
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~  341 (438)
T PRK10133        263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence            34444555566666667888896 567899999999999999999999999999999995 9999998887766555544


Q ss_pred             HHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHH
Q 039271          140 LSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFL  219 (609)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  219 (609)
                      ..+.                      .+. ..+....+.|++.+...|...+...+.+|++.       +.+.++... .
T Consensus       342 ~~~~----------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~~-~  390 (438)
T PRK10133        342 SAFA----------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIVM-T  390 (438)
T ss_pred             HHHc----------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHhH-H
Confidence            3332                      111 12445667899999999999999999887532       233444433 3


Q ss_pred             hhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHH
Q 039271          220 NVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       220 ~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  257 (609)
                      .+|+.++|.+.|++.+..| -+..|++..++.+...+..
T Consensus       391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~  429 (438)
T PRK10133        391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA  429 (438)
T ss_pred             hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            3678888889999988887 7888887766655444433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.94  E-value=1e-10  Score=128.85  Aligned_cols=196  Identities=14%  Similarity=0.108  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 039271           64 NQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVL  143 (609)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~  143 (609)
                      ..+.. ....++.....+-+++.++++.+++|++.+.+-++..+..++..++.+|. .|-|.+..|.++..+|++++++.
T Consensus        11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lP   88 (539)
T PF03137_consen   11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALP   88 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhcc
Confidence            33334 55555555666678899999999999999999999999999999999994 88889999999999999888765


Q ss_pred             hhhcc-CCC------CCCC-C-CCcc-----------------C--CCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhc
Q 039271          144 SFLMI-KPT------GCGD-G-FISC-----------------K--PLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGAD  195 (609)
Q Consensus       144 ~~~~~-~~~------~~~~-~-~~~~-----------------~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  195 (609)
                      -+... +..      .++. + ...|                 +  .........++++.++.|+|....++...+++-|
T Consensus        89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence            32110 100      0000 0 1122                 1  1112235788899999999999999999999999


Q ss_pred             cCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc---------------------ccc-hhHHHHHHHHHHHHH
Q 039271          196 QFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED---------------------SGK-WTLGFLVSLASAVIA  253 (609)
Q Consensus       196 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~---------------------~~g-~~~~f~~~~~~~~~~  253 (609)
                      ..+++.      -+..+|+++....+|.++|.++++.+..                     +.| |+..|++.+++.++.
T Consensus       169 nv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~  242 (539)
T PF03137_consen  169 NVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS  242 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999887      6788889999999999999888875532                     123 888888888777776


Q ss_pred             HHHHHhcCCcceec
Q 039271          254 LLSYLMGTPGYRYV  267 (609)
Q Consensus       254 ~~~~~~~~~~~~~~  267 (609)
                      .+.++..+++.++.
T Consensus       243 aipl~~FPk~lp~~  256 (539)
T PF03137_consen  243 AIPLFFFPKKLPGT  256 (539)
T ss_dssp             --------------
T ss_pred             HHHHHcCCccCCCc
Confidence            66666666655443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.92  E-value=1.9e-08  Score=110.22  Aligned_cols=176  Identities=16%  Similarity=0.088  Sum_probs=146.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH--HHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYL--TCAVFQLIF  133 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~--~~~~~~~~~  133 (609)
                      +.++.+.+...+..++++....+++.|.. ..+.+..+++..+++..+...++.++.|+++|+. ..++  +..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            56777888888888888888889999877 7999999999999999999999999999999995 6334  344444444


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+.+.+.                      ++++.++..-++.|+..|...+.....+.|+.+.++      ...++|
T Consensus       376 gl~~~~~p~~----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~G  427 (509)
T KOG2504|consen  376 GLARLFLPFA----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYG  427 (509)
T ss_pred             HHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHH
Confidence            4444444444                      567788888888999999999888889999999988      889999


Q ss_pred             HHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcC
Q 039271          214 YFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMGT  261 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  261 (609)
                      +......++.++||.++|++.|..| |...|+..+++.+++..+++..+
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999887 99999999988888877665544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.91  E-value=2.5e-08  Score=107.91  Aligned_cols=162  Identities=22%  Similarity=0.199  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.+..+++..++..+++....+..+-|.+..+|.+ ...+.+.....+...++.++.++++||+ |+|+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            45666677777777777766677777777777777 5667888889999999999999999995 999999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhh-hhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKE-RQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~  214 (609)
                      +.+++.+.  +                  ..+.+.+++..++.|++.+...+..+++++|..+.++.+. ++..|..++.
T Consensus       303 ~~~~~~~~--~------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~  362 (428)
T PF13347_consen  303 GFLLLFFL--G------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSV  362 (428)
T ss_pred             HHHHHHHH--H------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHh
Confidence            88877776  1                  1367888889999999999999999999999998654321 1225677888


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccch
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKW  239 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~  239 (609)
                      +.+...+|..+++.+.+.+.+..|+
T Consensus       363 ~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  363 NSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999988877654443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.90  E-value=9.5e-08  Score=101.16  Aligned_cols=149  Identities=8%  Similarity=-0.026  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      .+..++...+...+.+.+..+.+.++.+.+|.+..+.+++.....++..++.+++|+++||+ |||+++..+.++..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  274 (377)
T PRK11102        196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG  274 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            34444445555555666666777788888999999999999999999999999999999995 99999998887655443


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      +.+.......                  .+.+...++..+.+.+.+...+.....+.|..| +.      +++..+.++.
T Consensus       275 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~  329 (377)
T PRK11102        275 IWLVVSALLD------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGT  329 (377)
T ss_pred             HHHHHHHHHh------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHH
Confidence            3332221111                  223444444444444555555566666777766 55      7777777554


Q ss_pred             H-HhhhHHHHhhhhhh
Q 039271          218 F-LNVGSLFSNTILVY  232 (609)
Q Consensus       218 ~-~~ig~~~~~~i~~~  232 (609)
                      . ..+|+..++.+++.
T Consensus       330 ~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        330 LRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            3 45677777766543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.90  E-value=2.8e-08  Score=104.58  Aligned_cols=145  Identities=15%  Similarity=0.059  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHH-HHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWT-GTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      .++.+++..++.+..++...++++.|+.+ +|.+..+.+.+.+... +...++.+++|+++||+ |||+.+..+.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            45666666677788888888999999986 8999999998887765 57789999999999995 999998888877766


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +..+..+.. +......          ....+.+.+....++.+++.+...+...+++.|.+|+++      |++.++++
T Consensus       288 ~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  350 (356)
T TIGR00901       288 TNAGFVWLA-SNGHHDG----------ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALL  350 (356)
T ss_pred             HHHHHHHHH-hcCcccc----------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHH
Confidence            555443321 0000000          000234566677778899999999999999999999999      99999998


Q ss_pred             HHHHh
Q 039271          216 YFFLN  220 (609)
Q Consensus       216 ~~~~~  220 (609)
                      +...|
T Consensus       351 ~~~~~  355 (356)
T TIGR00901       351 SSLSA  355 (356)
T ss_pred             HHHHh
Confidence            77665

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.89  E-value=2.1e-08  Score=108.54  Aligned_cols=177  Identities=10%  Similarity=0.016  Sum_probs=119.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccch--------hHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGR--------YLTCA  127 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--------r~~~~  127 (609)
                      +.+|.+.+..++.+.+++.+..+.|.|+.+.+|++..+.|+..++..+...+..+++|.++||. -+        ||.+-
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999996 33        22221


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          128 VFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      . ......+..++.+...+.                  .+.+..++...+.-...|...+-...-..|..| +.      
T Consensus       337 ~-i~~~~~ai~l~~l~~~~~------------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~------  390 (466)
T KOG2532|consen  337 T-IAFGGPAVFLLVLAFTSD------------------EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QH------  390 (466)
T ss_pred             h-HHHHHHHHHHHeeeecCC------------------CcchHHHHHHHHHHHHcccchhhhHhhhhhccc-hH------
Confidence            1 111112222222211111                  111111111111111122222222232333333 33      


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhhhcccc---cchhHHHHHHHHHHHHHHHHHHh
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILVYYEDS---GKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      -+..+++.+...++.++++|.+.+.+...   ..|+.+|++.++..+++.+++.+
T Consensus       391 a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  391 AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence            66889999999999999999999999842   36999999999888887766544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.88  E-value=8.4e-08  Score=102.62  Aligned_cols=158  Identities=10%  Similarity=-0.129  Sum_probs=116.5

Q ss_pred             HHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039271           69 TLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMI  148 (609)
Q Consensus        69 ~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  148 (609)
                      +.........++.|+++.+|.++.+.|++.+...++..++.++.+++.||+ ++|+++..+.. ..+..+.+...     
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~-----  290 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQ-----  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHH-----
Confidence            334444555667788888999999999999999999999999999999995 99988877743 23332222222     


Q ss_pred             CCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhh
Q 039271          149 KPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNT  228 (609)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~  228 (609)
                                       .+.+...+..++.|++.+...+...+.+.+..|++.     ++|+..++.+...++|..++..
T Consensus       291 -----------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~  348 (393)
T PRK11195        291 -----------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLG  348 (393)
T ss_pred             -----------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHH
Confidence                             345555666777888888888888888877644332     1688899999999999999998


Q ss_pred             hhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          229 ILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       229 i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      +.+.+ +..|-+..+++.++..+..+..
T Consensus       349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        349 LYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            88865 5678777777766555554443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.88  E-value=2e-08  Score=101.33  Aligned_cols=170  Identities=12%  Similarity=0.092  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh--C-----------------CchhhhhHHHHHHHHHHHHHHhHHHHHhhh
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVL--Q-----------------QENANAANNVSKWTGTVYMCSLIGAFLSDS  118 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~--g-----------------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr  118 (609)
                      -+.+....+.+.+.||++.-......+.+.  +                 .+...--.-+.+.++.-+-+.++.+++.||
T Consensus       328 tlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iver  407 (528)
T KOG0253|consen  328 TLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVER  407 (528)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHH
Confidence            344555667788888887544332222110  0                 111111122344567778899999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCC
Q 039271          119 YWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFD  198 (609)
Q Consensus       119 ~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  198 (609)
                       +|||+++..+.+++.+..+++..+-.++                  ....+++.+|+.+.    +...+.+.+-.|.+|
T Consensus       408 -lGRKkTMal~l~~f~iflfll~~c~~rn------------------~~tvllf~arafis----g~fqvaYvYtPEVyP  464 (528)
T KOG0253|consen  408 -LGRKKTMALSLILFGIFLFLLTTCKTRN------------------AYTVLLFTARAFIS----GAFQVAYVYTPEVYP  464 (528)
T ss_pred             -hcchhHHHHHHHHHHHHHHHHHHhcCcc------------------hhHHHHHHHHHHHh----chheEEEEecCcccc
Confidence             5999999999999988888777662222                  12334555666554    334466788999999


Q ss_pred             CCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 039271          199 ESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       199 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      +..      |+.+.|......-+|+++.|.++ ...+..-.-..++..+++.+.++.++
T Consensus       465 Tav------RatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavc  516 (528)
T KOG0253|consen  465 TAV------RATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVC  516 (528)
T ss_pred             hhh------hhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHhe
Confidence            999      99999999999999999999998 33222223344555555544444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.87  E-value=3.6e-08  Score=119.91  Aligned_cols=185  Identities=13%  Similarity=-0.050  Sum_probs=132.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.++.+++..++.++.++.+..++|.|+.+.+|.+....+++.+...++..++.++.|+++|++ ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4566666666677777777888999999999999999999999999999999999999999985 777766666555544


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+.+.+........+...- +..+ -....+.+.++++.++.|++.+...+...+++.+.+|++.      ||+.+|..
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~  375 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLK-SILV-FLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAAN  375 (1140)
T ss_pred             HHHHHHhccccccccccccc-chhh-hhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHH
Confidence            44433321000000000000 0000 0001335667777888899999999999999999999999      99999999


Q ss_pred             HHHHhhhHHHHhhhhhhccc-ccchhHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYED-SGKWTLGFLVSLAS  249 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~-~~g~~~~f~~~~~~  249 (609)
                      ++..++|..+++.+.+.+.+ ..++...|++.+++
T Consensus       376 ~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        376 NVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999999988864 45666666555443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.86  E-value=8.4e-09  Score=107.59  Aligned_cols=142  Identities=25%  Similarity=0.325  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhhCCc-hhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           60 ILLANQGLATLAFFGVGVNLVLFLTRVLQQE-NANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      .++...+...+.++....+++.|+.+++|.+ ..+.+.+.+...+...++.++.|+++||+ |+|+..........++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~  288 (352)
T PF07690_consen  210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL  288 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence            3444455555566678889999989999999 89999999999999999999999999995 988887777766655555


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      .+.+...                   ..+....+...++.|++.+...+...+++.|.+|+++      |++..++++..
T Consensus       289 ~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~  343 (352)
T PF07690_consen  289 GLLLLPF-------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSI  343 (352)
T ss_dssp             HHCCSHH-------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHH
T ss_pred             HHHHHHH-------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHH
Confidence            4443311                   1234556667777899999999999999999999888      99999999999


Q ss_pred             HhhhHHHHh
Q 039271          219 LNVGSLFSN  227 (609)
Q Consensus       219 ~~ig~~~~~  227 (609)
                      .++|+.+||
T Consensus       344 ~~~~~~igP  352 (352)
T PF07690_consen  344 GSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHCC
Confidence            999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00898 2A0119 cation transport protein

Probab=98.84  E-value=3.1e-08  Score=109.51  Aligned_cols=133  Identities=20%  Similarity=0.104  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHH
Q 039271           98 VSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYL  177 (609)
Q Consensus        98 ~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  177 (609)
                      .....+....+.+++++++||+ |||+++.++.++..++.+++.+.  +.                  ...+...+..++
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~--~~------------------~~~~~~~~~~~~  419 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV--PV------------------DLYFLRTALAVL  419 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc--CC------------------CchHHHHHHHHH
Confidence            3445667778889999999995 99999999888777776655554  11                  112334444455


Q ss_pred             HHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 039271          178 IAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       178 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      .+++.+...+..+.+.+|.+|++.      |++++++.+....+|++++|.+.+ +. ..++..++++.++..+++.++.
T Consensus       420 ~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~  491 (505)
T TIGR00898       420 GKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHH
Confidence            666667777888899999999988      999999999999999999999988 43 3556667777666665555544


Q ss_pred             Hh
Q 039271          258 LM  259 (609)
Q Consensus       258 ~~  259 (609)
                      ++
T Consensus       492 ~~  493 (505)
T TIGR00898       492 LF  493 (505)
T ss_pred             Hc
Confidence            44

>PRK09848 glucuronide transporter; Provisional

Probab=98.83  E-value=4.5e-08  Score=106.60  Aligned_cols=163  Identities=12%  Similarity=0.115  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.+...++..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            3455556666666666666666677777777887766555545545667788999999999995 999999999988887


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhh-hhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKE-RQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~  214 (609)
                      +.+++.+.  +.                  .+.+.+++..++.++|.+...+...++.+|..|.++.+. ++.+|..++.
T Consensus       307 ~~~~~~~~--~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~  366 (448)
T PRK09848        307 GYLLFFWV--SV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL  366 (448)
T ss_pred             HHHHHHHc--Cc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence            77666543  11                  345666677778899999999999999999887653210 1115788889


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccch
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKW  239 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~  239 (609)
                      +++...+|..+|+.+.+.+.+..||
T Consensus       367 ~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        367 FSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999998877654444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.82  E-value=1.6e-07  Score=100.30  Aligned_cols=69  Identities=12%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 039271           74 GVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVL  143 (609)
Q Consensus        74 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~  143 (609)
                      ....+.+.|+.+++|++..+.+...+...++..++.++.|++.||+ |||+.+..+.++..++.+++.+.
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567788888999999999999999999999999999999995 99999999988877777766655

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.81  E-value=2.4e-07  Score=99.58  Aligned_cols=188  Identities=14%  Similarity=0.095  Sum_probs=125.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.+.+.+...++..+.-.....+..+.+-++-|++..++.++.....+...+..+++.++.||+ |||+.++.+..+..+
T Consensus       269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAV  347 (485)
T ss_pred             HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence            3445555555555444444444555666667899999999999999999999999999999995 999999999999888


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhc-CchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYG-GHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ..+++.........             ....-.+..+.+.++..+..+ +..|..+-+.+|+||+..      |..+.++
T Consensus       348 ~~~~~~~~~~l~~~-------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~  408 (485)
T KOG0569|consen  348 ALLLMSIALFLSNS-------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSV  408 (485)
T ss_pred             HHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHH
Confidence            88777765422200             000011122334444333333 347888999999999998      8888888


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcc
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGY  264 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  264 (609)
                      ....+.+..++-...-..+.+.+|- +.|++..+..++..+..+...|+.
T Consensus       409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            7777766666655555556565665 455555555555555555544543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.78  E-value=2.9e-07  Score=93.50  Aligned_cols=167  Identities=17%  Similarity=0.118  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ..|.+.+-..+.++.+|.+..|+|.++. +.|+|..++|+.++..++......+..-.+++|.-.+|+......+.+.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            4566777778899999999999999987 589999999999999999999999999999998657888888888888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      .+.+.+.  |                   .+...++  .+++|+|.|...|....++.+..++.+.     -++..++.+
T Consensus       288 ~~G~~~~--P-------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQ  339 (395)
T COG2807         288 LVGLLLA--P-------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQ  339 (395)
T ss_pred             HHHHHHh--h-------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhh
Confidence            8877765  2                   2333444  4789999999999999999998765442     334445544


Q ss_pred             HHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVI  252 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~  252 (609)
                      -..-+=+.+||.+.|++.|..| |+..++..+...++
T Consensus       340 g~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~  376 (395)
T COG2807         340 GVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL  376 (395)
T ss_pred             hhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence            4444556778999999999865 88776665544333

>PRK11043 putative transporter; Provisional

Probab=98.77  E-value=7.4e-07  Score=95.38  Aligned_cols=150  Identities=11%  Similarity=0.037  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 039271           66 GLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSF  145 (609)
Q Consensus        66 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  145 (609)
                      .+....++....+.|.|++ +.|.+..+.++......++..++.++.+++.||+ |+|+.+....+...++.+.+.....
T Consensus       213 ~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~  290 (401)
T PRK11043        213 AACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASL  290 (401)
T ss_pred             HHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455556677787775 5799999999888888888999999999999995 9999876666555554443332211


Q ss_pred             hccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHH
Q 039271          146 LMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLF  225 (609)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  225 (609)
                      ..                 ..+.+..++...+.+++.+...|...+...|..| ++      ++++.++++.....++..
T Consensus       291 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~~~~~  346 (401)
T PRK11043        291 LS-----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLGLCFL  346 (401)
T ss_pred             hc-----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHHHHHH
Confidence            00                 0234445556667788888888888887777765 45      889999999888888888


Q ss_pred             HhhhhhhcccccchhH
Q 039271          226 SNTILVYYEDSGKWTL  241 (609)
Q Consensus       226 ~~~i~~~l~~~~g~~~  241 (609)
                      ++.+.+.+.+......
T Consensus       347 ~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        347 ASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHccCCChhHH
Confidence            8888888877544433

>PRK09669 putative symporter YagG; Provisional

Probab=98.68  E-value=3.8e-07  Score=99.21  Aligned_cols=127  Identities=13%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHH
Q 039271           92 ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIF  171 (609)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (609)
                      ...+.+.....+...++.+++++++||+ |||+.+..+.++..++.+.+.+.  +                  ..+.+.+
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~~~~  322 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFI--P------------------PSNVWLI  322 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh--C------------------cchHHHH
Confidence            3344555566677788889999999995 99999998876655443333222  1                  1456667


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhccCCCCChh-hhhccchhHHHHHHHHhhhHHHHhhhhhhcccccch
Q 039271          172 YLSIYLIAFGYGGHQPTLATFGADQFDESKPK-ERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKW  239 (609)
Q Consensus       172 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~  239 (609)
                      ++..++.|++.+...+..+++++|..|.++.+ .++..|..++.+.+...+|..+|+.++|++.+..|+
T Consensus       323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77778899999999999999999998744321 111256678889999999999999999988776655

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.68  E-value=8.4e-07  Score=94.14  Aligned_cols=139  Identities=13%  Similarity=0.192  Sum_probs=99.9

Q ss_pred             cccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHH
Q 039271          400 SMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQ  479 (609)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  479 (609)
                      ...+.+..+-+.+-++..+++    +|++..+       .+..|+++.++-++.+.+.+                ++|..
T Consensus       410 v~~a~~~~gEI~~~ffs~klI----~kiGHv~-------v~~lgLa~~~~Rf~~~S~L~----------------n~W~v  462 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFKLI----EKIGHVN-------VMYLGLACNVGRFLYYSYLQ----------------NPWMV  462 (618)
T ss_pred             ehhhhhccchHHHHHHHHHHH----HHhcccc-------eeeehhhHHHHHHHHHHHhc----------------Cchhe
Confidence            444555555555555555554    4433222       47788889999988888764                66777


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhh
Q 039271          480 IPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMAS-ISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMD  558 (609)
Q Consensus       480 i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  558 (609)
                      ++.-++.++....+.....+|+...+|+++|.+++++.... -++|-.+|+.+.+.+....                +..
T Consensus       463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f----------------g~~  526 (618)
T KOG3762|consen  463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF----------------GAR  526 (618)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee----------------hhH
Confidence            77889999999999999999999999999999999998855 5677788888887664321                223


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccc
Q 039271          559 RFYFLLAVLTAFDFVIYLICANW  581 (609)
Q Consensus       559 ~~f~~~a~~~~v~~v~~~~~~~~  581 (609)
                      .+|+++++.+++.++++...-+.
T Consensus       527 ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  527 TTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Confidence            46788888877776666554433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.68  E-value=8.1e-07  Score=94.86  Aligned_cols=177  Identities=11%  Similarity=0.040  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      +...++..++.....-....+...|+++.-|.+....+...++..+.-...-.+.+++..|+ |-|+++.++.+..++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44444444555555555557888898864447778888888888888888889999999995 99999999998888877


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      .+.+....|.                 ........+...+.|+..+........++.+..|++.      |+++-++++.
T Consensus       288 ~l~a~~~~~~-----------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~  344 (400)
T PF03825_consen  288 LLYAYFSDPW-----------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSA  344 (400)
T ss_pred             HHHHHhcCCc-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHH
Confidence            7776651111                 0112223444567899999999999999999999999      8999998776


Q ss_pred             -HHhhhHHHHhhhhhhcccccchh------HHHHHHHHHHHHHHHHHH
Q 039271          218 -FLNVGSLFSNTILVYYEDSGKWT------LGFLVSLASAVIALLSYL  258 (609)
Q Consensus       218 -~~~ig~~~~~~i~~~l~~~~g~~------~~f~~~~~~~~~~~~~~~  258 (609)
                       ...+|..+|..++|++.|.+|-+      ..+.+.++..++..++++
T Consensus       345 ~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~  392 (400)
T PF03825_consen  345 LSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV  392 (400)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence             46799999999999999987644      344445554444444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.68  E-value=1.7e-07  Score=98.66  Aligned_cols=140  Identities=16%  Similarity=0.098  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      .+.+.+..++....++.+..+++.|+++.+|.+..+++++.....+...++.+++|+++||+ |||+.+..+......+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            44455555555556677788999999999999999999999999999999999999999995 99988877776655555


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      .++.+...+                  ..+.+..+....+.+++.|...+...+++++.+| ++      ++...|+.+.
T Consensus       306 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~~~  360 (366)
T TIGR00886       306 FLVVLGLVS------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLVGA  360 (366)
T ss_pred             HHHHhcCCC------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHHHH
Confidence            444433000                  0145555555666666777777778888888887 35      8899999888


Q ss_pred             HHhhhH
Q 039271          218 FLNVGS  223 (609)
Q Consensus       218 ~~~ig~  223 (609)
                      ..++|+
T Consensus       361 ~~~~g~  366 (366)
T TIGR00886       361 IGNLGG  366 (366)
T ss_pred             hccCCC
Confidence            877763

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.64  E-value=3.3e-07  Score=100.56  Aligned_cols=165  Identities=12%  Similarity=0.011  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.++.+++..++.+...+....+.+ |+.+...-+....+++.+...+...++.++.++++||+ |||+++..+.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~-y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAI-YYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhee-eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            5566666666777776666556555 44333333455666777777788899999999999995 999999988877666


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCCh-hhhhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKP-KERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~  214 (609)
                      +.+.+.......                 ..+.+.+++..++.+++.+...+..+++++|..|.++- ..++..|..+++
T Consensus       309 ~~~~~~~~~~~~-----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        309 SCGVLLLMGLAA-----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHHHhccC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            655543321100                 13455666677778899999999999999999774321 111114567888


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccch
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKW  239 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~  239 (609)
                      ..+...+|..+++.+.|++.+..|+
T Consensus       372 ~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        372 QTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999887765554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=3e-05  Score=82.91  Aligned_cols=111  Identities=11%  Similarity=0.041  Sum_probs=86.0

Q ss_pred             hhhHH-HHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHH
Q 039271           93 NAANN-VSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIF  171 (609)
Q Consensus        93 ~~~~~-~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (609)
                      .+|.. ..+.+....+..++++.+.|+. |.|..+.++...+..-.+....                       .|-+.+
T Consensus        50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------~N~y~~  105 (461)
T KOG3098|consen   50 YAGYYGQAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------PNSYYL  105 (461)
T ss_pred             CccHHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------cchHHH
Confidence            34443 6777888899999999999995 9999999998776655443333                       456778


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          172 YLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       172 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                      +.+-.+.|+|.+..+.....++++..+++.      +.+..++.....+.+.++|.++.-.+
T Consensus       106 yfssallG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  106 YFSSALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             HHHHHHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhheee
Confidence            889999999999999999999999888877      77777777777777776665554433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.59  E-value=4.3e-06  Score=89.28  Aligned_cols=139  Identities=9%  Similarity=0.061  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 039271           75 VGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCG  154 (609)
Q Consensus        75 ~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (609)
                      .....+.|+++.+|.+..+.++.......+..++.++.+++.||+ +|+...  +.....++.+.........       
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~-------  295 (394)
T PRK11652        226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG-------  295 (394)
T ss_pred             HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc-------
Confidence            345567788888999999999988888888888999999999995 743322  2222222222222211100       


Q ss_pred             CCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcc
Q 039271          155 DGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYE  234 (609)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  234 (609)
                                ..+.+.+.+..++.+++.+...|...+...|.+| ++      ++...++.+...++|+.+++.+++++.
T Consensus       296 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        296 ----------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             ----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                      1235566777788899999999999999999887 34      778888988889999999999999887


Q ss_pred             cccchh
Q 039271          235 DSGKWT  240 (609)
Q Consensus       235 ~~~g~~  240 (609)
                      +...+.
T Consensus       359 ~~~~~~  364 (394)
T PRK11652        359 QTGQFS  364 (394)
T ss_pred             CCchHH
Confidence            654443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.59  E-value=1.5e-06  Score=93.48  Aligned_cols=163  Identities=10%  Similarity=-0.030  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRV-LQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ++..++..++......+..++++.|+.+. .+.+....+...+.+..+..++.+++|+++||+ ++||++.+..++.++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            33344445555555556668889998653 245555556667777788999999999999995 9999988887776666


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFY  216 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  216 (609)
                      +++....                      .+. .......+.|++.+.++|...++..+..+++.      +..... ..
T Consensus       313 ~ll~~~~----------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~-l~  362 (410)
T TIGR00885       313 CLGSIFA----------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG-LV  362 (410)
T ss_pred             HHHHHHc----------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH-HH
Confidence            6555543                      111 22455666788888889999999999988665      222222 22


Q ss_pred             HHHhhhHHHHhhhhhhccccc------chhHHHHHHHHHHHH
Q 039271          217 FFLNVGSLFSNTILVYYEDSG------KWTLGFLVSLASAVI  252 (609)
Q Consensus       217 ~~~~ig~~~~~~i~~~l~~~~------g~~~~f~~~~~~~~~  252 (609)
                      ++ .+|+.+.|.+.|++.|..      +.+..|+++..+.+.
T Consensus       363 ~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       363 MA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            23 399999999999999943      477888887665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.58  E-value=7.2e-07  Score=94.17  Aligned_cols=175  Identities=10%  Similarity=0.040  Sum_probs=136.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh---CCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVL---QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      |++|.+.+........|+..-..++.|.+..+   +.+....|...++..+.-.+...+..++.+|+ |.|+.++++..+
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence            46666666555555556666566788887544   34456688889999999999999999999995 999999999988


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..+=...+++.                      ++++.+.+...+.++-.+..-....-++++.+|++.      ..+.+
T Consensus       299 ~~iRi~~~~~~----------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y  350 (412)
T PF01306_consen  299 MAIRIIGSGFA----------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLY  350 (412)
T ss_dssp             HHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHH
T ss_pred             HHHHHHHHhhh----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHH
Confidence            88887777777                      678889999999999888888899999999999876      55666


Q ss_pred             HH-HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          213 CY-FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       213 ~~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      .+ ++.+..+|..+.+.++|++-|..|++..|++.+...++..++..+
T Consensus       351 ~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  351 LVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence            66 456788999999999999999999999998877666555444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.44  E-value=3.7e-06  Score=92.27  Aligned_cols=186  Identities=10%  Similarity=-0.019  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhh----hhHHHHHHHHHHHHHHhHHHH----HhhhccchhHH--HH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENAN----AANNVSKWTGTVYMCSLIGAF----LSDSYWGRYLT--CA  127 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~G~----laDr~~Grr~~--~~  127 (609)
                      +..+++...+.+..+.-..+.++.|..++.+.+...    .+++.+.-.+...+.+++..+    +.||..+.+..  +.
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            333444444555555555566777877665443222    667777777777777777554    44441122333  36


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          128 VFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      +|.++..++.+.+++..... .            .....+.+.+.+..++.++|.....|...+++++..|++.      
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~-~------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------  414 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFA-D------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-C------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence            77777777776665431000 0            0112568888999999999999999999999999999988      


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      |++.+++++....+|..+++.+.....+..+|...|...++..++..++++...|
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888777678888887777666655555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=6.1e-07  Score=91.95  Aligned_cols=177  Identities=10%  Similarity=-0.013  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccc--hhHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWG--RYLTCAVFQLIFV  134 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~~~~~~~~~~  134 (609)
                      .++...+.....+.+....-+.++.+..+.+..+..+.|...--..+.+.++..+.|.++||+ +  |-.....+++...
T Consensus       271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G  349 (464)
T KOG3764|consen  271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVG  349 (464)
T ss_pred             hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHH
Confidence            455666666667777776778889998888886666899888889999999999999999996 8  6445555544444


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +.+....++                      +++..+++-++..+++.+...+........+.+.++..+-.-.|..+++
T Consensus       350 ~~~~~iP~~----------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaI  407 (464)
T KOG3764|consen  350 VSSGPIPFA----------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAI  407 (464)
T ss_pred             HHhchhHhh----------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHH
Confidence            433333343                      5677788888888888888887777777777776553322237888999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      ...+..+|..+||.++|.+.+..|++|.-.+.++..++-.-+
T Consensus       408 ad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv  449 (464)
T KOG3764|consen  408 ADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV  449 (464)
T ss_pred             HHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998877766665554433

>PRK11462 putative transporter; Provisional

Probab=98.39  E-value=6e-06  Score=90.23  Aligned_cols=127  Identities=13%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHH
Q 039271           92 ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIF  171 (609)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (609)
                      ...+.+...+.+...++.+++++++||+ |+|+++..+..+..+..+++.+.  +.                  .+...+
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~  321 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFV--PM------------------QASITM  321 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHh--ch------------------hHHHHH
Confidence            3445667788888899999999999995 99988776555444433333222  11                  223334


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhccCCCCChhh-hhccchhHHHHHHHHhhhHHHHhhhhhhcccccch
Q 039271          172 YLSIYLIAFGYGGHQPTLATFGADQFDESKPKE-RQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKW  239 (609)
Q Consensus       172 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~  239 (609)
                      ++..++.|++.+...+..+++++|..+.++-+. ++.-+..++...+...+|..+|+.++|++.+..|+
T Consensus       322 ~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        322 FVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            445566777777777777889999877432111 11134445666778888888888888776554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.37  E-value=2.4e-07  Score=96.80  Aligned_cols=148  Identities=16%  Similarity=0.132  Sum_probs=116.0

Q ss_pred             CcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchh
Q 039271          397 PAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSI  476 (609)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  476 (609)
                      ..+.++..-.++..++.|+.+.+    ++|++|++       .+..|..+-.++.+..++..                ++
T Consensus        69 ~~Gll~~vf~v~~~i~sPl~gyL----adryNR~~-------v~~vG~~iW~~Av~~~~fs~----------------~F  121 (493)
T KOG1330|consen   69 ELGLLQTVFIVVFMIASPLFGYL----ADRYNRKR-------VIAVGIFIWTLAVFASGFSN----------------HF  121 (493)
T ss_pred             hccchhHHHHHHHHHHHHHHHHH----HhhcCcce-------EEeeHHHHHHHHHHHHHHHH----------------HH
Confidence            34566667777777788877664    67776553       58889998888888887742                55


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccch
Q 039271          477 FWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGH  556 (609)
Q Consensus       477 ~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~  556 (609)
                      |.+.+.-.+.|+||....|..++++.+.+|++.|+++.+++++....|..+|.++.+.+...+               .+
T Consensus       122 wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~---------------~~  186 (493)
T KOG1330|consen  122 WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT---------------FW  186 (493)
T ss_pred             HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc---------------cc
Confidence            666666789999999999999999999999999999999999999999988877776554332               12


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcccccccc
Q 039271          557 MDRFYFLLAVLTAFDFVIYLICANWYKGIN  586 (609)
Q Consensus       557 ~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  586 (609)
                      +.+.|+..++++++.+++..++.++..++.
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga  216 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREPERGA  216 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence            445678888999888888888888776543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.35  E-value=1.8e-05  Score=86.08  Aligned_cols=205  Identities=11%  Similarity=0.013  Sum_probs=139.4

Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hCCchh------h----hhHHHHHHHHHHHHHHhHHHHHhhhc
Q 039271           51 NKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRV-LQQENA------N----AANNVSKWTGTVYMCSLIGAFLSDSY  119 (609)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~g~~~~------~----~~~~~~~~~~~~~~~~~~~G~laDr~  119 (609)
                      .+.-+|.++.+++.+++.+++++.+..+...|..++ ++-++.      +    ..+....+.+...+..++--++.+|+
T Consensus       253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~  332 (477)
T TIGR01301       253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW  332 (477)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999988888888753 442211      1    22444455555567777778889995


Q ss_pred             cch-hHHHHHHHHHHHHHHHHHHHHhh-hc-cCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhcc
Q 039271          120 WGR-YLTCAVFQLIFVVGLVLLSVLSF-LM-IKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQ  196 (609)
Q Consensus       120 ~Gr-r~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  196 (609)
                       |+ |++...+.++..++.....+... ++ ..+.+-.++   .-..+....+..++...+.|+..+......++++++.
T Consensus       333 -g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~  408 (477)
T TIGR01301       333 -GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGE---SLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR  408 (477)
T ss_pred             -ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc---ccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence             85 67778888887777776664421 10 000000000   0000011146667777789999999999999999999


Q ss_pred             CCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccc--hhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271          197 FDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGK--WTLGFLVSLASAVIALLSYLMGTPG  263 (609)
Q Consensus       197 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~  263 (609)
                      .+++.+    +.|..+|+.|.++.+...+..+..|.+.+..|  -.+++.++++.++++.++.+...|+
T Consensus       409 ~~~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       409 SSNLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ccccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            885431    16888999999999999888877777555444  5678888888888887777666554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.34  E-value=2.1e-05  Score=69.72  Aligned_cols=134  Identities=17%  Similarity=0.144  Sum_probs=91.1

Q ss_pred             hhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q 039271          404 FDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQY  483 (609)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~  483 (609)
                      ...+..++..++.+++.|+..+|           ..+..+..+..++.+.....                .+.+.+....
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~   58 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS----------------SNITVLIIAR   58 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh----------------ccHHHHHHHH
Confidence            34455556666666654333332           23556666666666655442                2445566667


Q ss_pred             HHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHH
Q 039271          484 VLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFL  563 (609)
Q Consensus       484 ~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~  563 (609)
                      ++.+++.....+....++.|..|++.|+++.++.++...++..+++.+.+.+.+.                .++.+.|++
T Consensus        59 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~  122 (141)
T TIGR00880        59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWRAPFLF  122 (141)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchHHHHHH
Confidence            8888888888888989999999999999999999999999999999988876431                123345666


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 039271          564 LAVLTAFDFVIYLICAN  580 (609)
Q Consensus       564 ~a~~~~v~~v~~~~~~~  580 (609)
                      .+++.++..+..+...+
T Consensus       123 ~~~~~~~~~~~~~~~~~  139 (141)
T TIGR00880       123 LAILALAAFILLAFLLP  139 (141)
T ss_pred             HHHHHHHHHHHHhhcCC
Confidence            66666666665555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.3e-05  Score=82.90  Aligned_cols=154  Identities=18%  Similarity=0.127  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      ..-.+..++.--.-.....+++.|+.+..|++..+++..++.+..+.+++..++-++..|+ -..|.+.+..++..+.++
T Consensus       239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~  317 (422)
T COG0738         239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLL  317 (422)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence            3334444444444445668999999988999999999999999999999999999999995 889988887765555444


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ..++.                      .+.. -+-+..+.|+..+.++|+..++..+..|++.+        ..|..-..
T Consensus       318 ~~~l~----------------------~g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~ts--------~~s~~l~m  366 (422)
T COG0738         318 AVALI----------------------GGVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHTS--------VGSGLLVM  366 (422)
T ss_pred             HHHHh----------------------cChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcccc--------ccceeeee
Confidence            44443                      2222 33345667889999999999999999995542        22222334


Q ss_pred             HhhhHHHHhhhhhhcccccchhHHHH
Q 039271          219 LNVGSLFSNTILVYYEDSGKWTLGFL  244 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~g~~~~f~  244 (609)
                      ..+|+++-|.+-|++.|..|-...+.
T Consensus       367 aivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         367 AIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             heecchHHHHHHHHHHHhhhhHHHHH
Confidence            56889999999999999988777766

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.32  E-value=0.00089  Score=72.54  Aligned_cols=168  Identities=13%  Similarity=0.010  Sum_probs=102.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCC-----chhhhhHHHHHHHHHHHHH-HhHHHHHhhhccchhHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQ-----ENANAANNVSKWTGTVYMC-SLIGAFLSDSYWGRYLTCAV  128 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~-----~~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~~~~  128 (609)
                      +|+++.+.+..++-.+.|+.+.     -+.+.+..     +.....++-+...+...+. .++-+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            4566666666666666655332     24566655     3345677766665555555 88899999995 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccC--CC-CCCCCCCccCCCcch------hHHHHHHHHHHHHHhhcCchh-hhhhhhhccCC
Q 039271          129 FQLIFVVGLVLLSVLSFLMIK--PT-GCGDGFISCKPLSSI------FAAIFYLSIYLIAFGYGGHQP-TLATFGADQFD  198 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~  198 (609)
                      ....+....++.++...|.-.  +| ...|+.......+-.      +.|..-+.-+...+-...+.+ ..++++.|.+.
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t  159 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT  159 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            888888777777766554311  00 110000000000000      011111111122222223344 77999999999


Q ss_pred             CCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcc
Q 039271          199 ESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYE  234 (609)
Q Consensus       199 ~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~  234 (609)
                      .++      -.+.+++++.+.|+|..+++.+..++.
T Consensus       160 ~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       160 IDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887      558899999999999999999888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.32  E-value=2.9e-05  Score=83.61  Aligned_cols=173  Identities=20%  Similarity=0.058  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |.++..++...+.+..++.+..+.|.|+++.+|.+..+.++.......+..++..+.+.+.++. ++++.......+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4566666666667777777778889999988999999999988878888888888888876553 455554444444444


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +.+++.....-.                 ..+.+..+++.++.++|.+...|+.....-  .+.+.+     +|+..+++
T Consensus       297 g~~l~~~~~~~~-----------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~a~~  352 (413)
T PRK15403        297 GLALLIVGNLLW-----------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVSASL  352 (413)
T ss_pred             HHHHHHHHHHHc-----------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHHHHH
Confidence            444443321000                 122334566777788888888877765332  332222     67777888


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIAL  254 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~  254 (609)
                      +.....+...++...+++... +-++.|.+..++..+..
T Consensus       353 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        353 NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV  390 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence            888778888888888887654 55666666555444433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.31  E-value=1.8e-05  Score=79.34  Aligned_cols=146  Identities=21%  Similarity=0.254  Sum_probs=108.2

Q ss_pred             HHHHHHHHHhhCCch--hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 039271           77 VNLVLFLTRVLQQEN--ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCG  154 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (609)
                      ...+.+.. +.+.+.  ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.++..+.  +        
T Consensus        23 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~--~--------   90 (338)
T COG0477          23 PALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALA--P--------   90 (338)
T ss_pred             HHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhC--c--------
Confidence            34444433 444444  4788999999999999999999999996 99988888877655554444443  0        


Q ss_pred             CCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCC-CChhhhhccchhHHHHHH-HHhhhHHHHhhhhhh
Q 039271          155 DGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDE-SKPKERQSKTLFFCYFYF-FLNVGSLFSNTILVY  232 (609)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~~~~~i~~~  232 (609)
                               . .+.+.+.+.|.+.|++.+...+...+++.|.+|+ +.      |+...+.... ...+|..++|.+++.
T Consensus        91 ---------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T COG0477          91 ---------N-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGL  154 (338)
T ss_pred             ---------c-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0 2477888889989999999999999999999987 33      7788888777 577888888877776


Q ss_pred             cccc--cchhHHHHHHHHHH
Q 039271          233 YEDS--GKWTLGFLVSLASA  250 (609)
Q Consensus       233 l~~~--~g~~~~f~~~~~~~  250 (609)
                      +...  .+|++.|.......
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         155 LLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHH
Confidence            6543  57888666555443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.30  E-value=4.7e-05  Score=75.33  Aligned_cols=166  Identities=12%  Similarity=0.109  Sum_probs=112.1

Q ss_pred             HHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039271           71 AFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKP  150 (609)
Q Consensus        71 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (609)
                      +.|.+..+ ...+++.+|.|..+...+-+...++..++ ++.|.+.|++ |.+.++.+|.+...+|..++........  
T Consensus        17 t~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i--   91 (250)
T PF06813_consen   17 TTYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI--   91 (250)
T ss_pred             cccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc--
Confidence            44555444 45678899999999999999999998874 8899999995 9999999999999999988877632211  


Q ss_pred             CCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhh
Q 039271          151 TGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTIL  230 (609)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~  230 (609)
                                   .....|.+.+..++.+.+.............+.||. +      ||++.|+.-....+++.+-..+.
T Consensus        92 -------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~  151 (250)
T PF06813_consen   92 -------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIY  151 (250)
T ss_pred             -------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHH
Confidence                         113467777777777776666666666666788984 5      89999987666667666544444


Q ss_pred             hhcccccchhHHHHHHHHHHHHHHHHHHhcC
Q 039271          231 VYYEDSGKWTLGFLVSLASAVIALLSYLMGT  261 (609)
Q Consensus       231 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  261 (609)
                      ..+...-.-...+.++....+++++...+.+
T Consensus       152 ~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  152 SAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            4333332223333333333444444444433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.29  E-value=9.3e-06  Score=86.77  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .+..+++..++...++....+.+.-|.+..+|.+.....+..........++.++..+|++|+ |+|+++.++.++.+++
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~  315 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG  315 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            344444455555555555555666666666788888888888888888888899999999995 9999999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCCh--hhhhccchhHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKP--KERQSKTLFFCY  214 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~  214 (609)
                      .+++.+.  |                  ..+.+.+++..++.++|.+...+..+++++|..+-++-  +.|+ -|..++.
T Consensus       316 ~~~~~f~--~------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~-eGi~~s~  374 (467)
T COG2211         316 YLLLYFT--P------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRR-EGIVYSG  374 (467)
T ss_pred             HHHHHhh--c------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCc-hhhHHHH
Confidence            9888877  1                  15678888888999999999999999999998875332  2222 4556667


Q ss_pred             HHHHHhhhHHHHhhhhhhcccc
Q 039271          215 FYFFLNVGSLFSNTILVYYEDS  236 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~  236 (609)
                      +.+..=+|..++..+.|++...
T Consensus       375 ~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         375 MTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777767777777666665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.28  E-value=2.5e-05  Score=81.33  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=133.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 039271           66 GLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSF  145 (609)
Q Consensus        66 ~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~  145 (609)
                      +...++++.--..+=+|--+.+|++..+.......+..+..++..+.|++..|-.+++++..++....++++.++.++..
T Consensus       218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~  297 (403)
T PF03209_consen  218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP  297 (403)
T ss_pred             HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555677788888999999999999999999999999999999885468888888998888888877776632


Q ss_pred             hccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHH
Q 039271          146 LMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLF  225 (609)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  225 (609)
                      .                   .+.+.+..+.+++|++.|......-+.+.|+..+++      .|..+|.+.....+...+
T Consensus       298 ~-------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Gl  352 (403)
T PF03209_consen  298 L-------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGL  352 (403)
T ss_pred             c-------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHH
Confidence            1                   457889999999999999999988999999998887      778899998888888888


Q ss_pred             Hhhhhhhcccc----------cchhHHHHHHHHHHHHHHHHH
Q 039271          226 SNTILVYYEDS----------GKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       226 ~~~i~~~l~~~----------~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      |..++|.+.|.          .+|..+|.+-++..++++++.
T Consensus       353 g~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  353 GTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            87777765441          346677777777666666554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.23  E-value=0.00059  Score=72.00  Aligned_cols=157  Identities=16%  Similarity=0.079  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHh-hCCchhhhh-HHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 039271           76 GVNLVLFLTRV-LQQENANAA-NNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGC  153 (609)
Q Consensus        76 ~~~~~~yl~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (609)
                      -+++..|+.+. .|++..++. -+.-+.+-.+....++...+.|.. |-|++++++.+..++...++...          
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~----------   91 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG----------   91 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH----------
Confidence            47788999886 899998875 667777788888889999999994 99999999988877777776665          


Q ss_pred             CCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          154 GDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                                  ++...+-+..+.-|++.+. ..+..+++=-..|+++      .-++.+....+.-+|-.++.+++-.+
T Consensus        92 ------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQll  152 (412)
T PF01770_consen   92 ------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLL  152 (412)
T ss_pred             ------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        5566676777777766655 3344555555556554      44556666667667777776666555


Q ss_pred             cc--ccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          234 ED--SGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       234 ~~--~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      ..  ..++...+++......++++..++.++
T Consensus       153 vs~~~~sy~~L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  153 VSFGGVSYFQLNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44  345667777777766666665554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.22  E-value=3.3e-05  Score=85.32  Aligned_cols=178  Identities=11%  Similarity=-0.002  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHH--hhCCch------hhhhHHHHHHHHHHHHHHhHH----HHHhhhccchhHHHHHHHHH
Q 039271           65 QGLATLAFFGVGVNLVLFLTR--VLQQEN------ANAANNVSKWTGTVYMCSLIG----AFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        65 ~~~~~~~~~~~~~~~~~yl~~--~~g~~~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grr~~~~~~~~~  132 (609)
                      .+.....||.+....+.++..  ..+.+.      ...+++.++-.+...++.++.    +++.||+ +..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            345555666666666666542  111111      124555666666666666666    6666664 677888899988


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..++.+.+.+......             +....+.+.+.+..++.++|.....|...+++.+..|++.      |++.+
T Consensus       360 ~~l~f~~l~~~~~~~~-------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~  420 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN-------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIM  420 (500)
T ss_pred             HHHHHHHHHHHHHhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHH
Confidence            8888887766521100             0011345678888999999999999999999999999988      99999


Q ss_pred             HHHHHHHhhhHHHHhhhhhhccc----------ccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          213 CYFYFFLNVGSLFSNTILVYYED----------SGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      |.+.....+|..++..+.+....          ..++.+.|...++..++..++++...+
T Consensus       421 g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        421 GSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888887777653221          123566776666554433333333333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.21  E-value=6.6e-06  Score=87.50  Aligned_cols=172  Identities=9%  Similarity=-0.093  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 039271           61 LLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLL  140 (609)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~  140 (609)
                      .++..++.+++.-.+.+++--++ ++++-.+.-.|........+-.+.-++.++|..++ |+-+++.+++..+.+=++.+
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence            44445555555555556664444 46776666677666666777778888899999996 99999999999888887777


Q ss_pred             HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH-HHHHH
Q 039271          141 SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY-FYFFL  219 (609)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~  219 (609)
                      ...                      +|+|+.+..-+++|+..+..+.++.+++++..|++.      |.++-++ .....
T Consensus       454 S~L----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~  505 (618)
T KOG3762|consen  454 SYL----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFH  505 (618)
T ss_pred             HHh----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhc
Confidence            777                      789999999999999999999999999999999998      7777776 44466


Q ss_pred             hhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          220 NVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       220 ~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      .+|-.+|.+|+|.+...+|-+..|.+.++.+++.++......+
T Consensus       506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8899999999999999999999998888777777665554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.17  E-value=1.5e-08  Score=110.35  Aligned_cols=185  Identities=16%  Similarity=0.101  Sum_probs=110.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      +.+...+...++..+..+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||++++.+.++.++
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence            3444445555555444444444444555556677666  2223344566667778888999995 999999999887777


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhc-CchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYG-GHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +.+.++........           ++ ...+... +....+...+.+ +..+..+.+.+|.||++.      |+++.++
T Consensus       329 ~~~~~~~~~~~~~~-----------~~-~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~  389 (451)
T PF00083_consen  329 CSLILGIIFFLGVS-----------SS-SWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGL  389 (451)
T ss_pred             cccccccccccccc-----------cc-ccccccc-ceeeeeccccccccccccccccccccccccc------ccccccc
Confidence            66655411001000           00 0001111 112222222222 445677788999999999      9999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                      .+....+++.+++.+...+.+..+-...|.+.+++.++..++.+...|
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp  437 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP  437 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence            888889999999988888887776334455555544444444443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.13  E-value=1.8e-05  Score=86.17  Aligned_cols=166  Identities=12%  Similarity=0.076  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY---WGRYLTCAVFQLIF  133 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~~~~~~  133 (609)
                      .+|...+..++.....|++..|+|.|+++..|.+..+++.+...+.++..++.+++|+++||.   +.+|........++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            578888899999999999999999999986679999999999999999999999999999992   25666655555544


Q ss_pred             HH-HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          134 VV-GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      .+ +.+.+...                      .+......+.+....+.+...++...-..+....+.+     |-...
T Consensus       354 ~~~g~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~~~~  406 (495)
T KOG2533|consen  354 AIIGAISLLAA----------------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----ALTTV  406 (495)
T ss_pred             HHHHHHHHHhh----------------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hHHHH
Confidence            33 32333222                      1122222222223333444445555555565554442     33444


Q ss_pred             HHHHHHHhhhHHH-HhhhhhhcccccchhHHHHHHHHH
Q 039271          213 CYFYFFLNVGSLF-SNTILVYYEDSGKWTLGFLVSLAS  249 (609)
Q Consensus       213 ~~~~~~~~ig~~~-~~~i~~~l~~~~g~~~~f~~~~~~  249 (609)
                      +.+..+.+.++.+ +++..+.....++|...|.+..+.
T Consensus       407 ~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~  444 (495)
T KOG2533|consen  407 SAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAA  444 (495)
T ss_pred             hhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHH
Confidence            4444444444444 344444555557888888554433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.10  E-value=5.7e-05  Score=83.13  Aligned_cols=150  Identities=9%  Similarity=0.010  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhCCch----hhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-------HHHHHHHHH
Q 039271           65 QGLATLAFFGVGVNLVLFLTRVLQQEN----ANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYL-------TCAVFQLIF  133 (609)
Q Consensus        65 ~~~~~~~~~~~~~~~~~yl~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-------~~~~~~~~~  133 (609)
                      ..+.+..+......++.|.++..+.+.    -...++.+...+...+..|+.|++.||+ |||+       .+.+|.++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence            344444455555677777764332211    1234455555667778888899999995 9887       377777777


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+.++........            .....+.+.+....++.|+|.+...|...+++.+..|++.      ++..++
T Consensus       357 ~~~~~~~~~~~~~~~~------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~g  418 (489)
T PRK10207        357 SLGFLTAAAAGMWFAD------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFILG  418 (489)
T ss_pred             HHHHHHHHHHHHhhcC------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHHH
Confidence            7666544322100000            0001345666777888999999999999999999999988      899999


Q ss_pred             HHHHHHhhhHHHHhhhhhhc
Q 039271          214 YFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       214 ~~~~~~~ig~~~~~~i~~~l  233 (609)
                      +++...++|+.+|..++...
T Consensus       419 ~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        419 MWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998887655

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.06  E-value=3.7e-05  Score=87.20  Aligned_cols=133  Identities=15%  Similarity=0.088  Sum_probs=94.0

Q ss_pred             ccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc--c-------
Q 039271          395 RLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKY--I-------  465 (609)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-------  465 (609)
                      ....+++.+...++..+...+++.+    ++|.+|++       .+.+|+++++++.++++..+-...++  .       
T Consensus        67 s~~~G~i~s~~~i~~~~~~i~v~~~----~~r~~r~~-------~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~  135 (633)
T TIGR00805        67 TSSSGLINGSYEIGNLLLIIFVSYF----GTKLHRPI-------VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG  135 (633)
T ss_pred             CCcceeeeehhhHHHHHHHHHHHHh----hcccCcce-------EEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence            3445667777777777777777765    44443332       37788888888888776653211000  0       


Q ss_pred             ------CC-----------------CCCc-c--cchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHH
Q 039271          466 ------SP-----------------GEKA-S--SLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMA  519 (609)
Q Consensus       466 ------~~-----------------~g~~-~--~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~  519 (609)
                            +.                 .++. .  ...+..++.+-++.|+|.+...+...+++.|.+|++.|+.+.|+.+.
T Consensus       136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~  215 (633)
T TIGR00805       136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES  215 (633)
T ss_pred             cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence                  00                 0000 0  11345566788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 039271          520 SISFGNYVSSLLVVMVMGI  538 (609)
Q Consensus       520 ~~~lg~~ig~~~~~~i~~~  538 (609)
                      ...+|..+|+.+.+.+.+.
T Consensus       216 ~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       216 IAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             HHHhhhHHHHHHHHHHHhc
Confidence            9999999999998877653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.06  E-value=0.00011  Score=77.05  Aligned_cols=163  Identities=15%  Similarity=0.129  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhc---cchhHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSY---WGRYLTCAVFQLI  132 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~~~~~~~~  132 (609)
                      +.++.+....+..-+++..=.+++++|+. .+|++.+-.+.+-....+...+.+|+.|..+||-   +||||-++....+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56777777777777887777789999986 6999999999999999999999999999999973   5888877666554


Q ss_pred             H-HHHHHHHHHHhhhccCCCCCCCCCCccCC----CcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhc
Q 039271          133 F-VVGLVLLSVLSFLMIKPTGCGDGFISCKP----LSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQS  207 (609)
Q Consensus       133 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (609)
                      . .++..++..+.  ++       |.-.+++    .......+++++..+.=+.....+.+.-++++|+...++++.   
T Consensus       111 ~i~~~l~Lig~aa--Di-------g~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~---  178 (498)
T KOG0637|consen  111 LIAVSLFLIGYAA--DI-------GLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT---  178 (498)
T ss_pred             HHHHHHhhhhhHh--hh-------hHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh---
Confidence            3 45555555442  10       0001121    222456677777778888888889999999999987765321   


Q ss_pred             cchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          208 KTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       208 r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                      |  +.+++.+...+|+.+|..+++++
T Consensus       179 ~--Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  179 R--ANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             c--cchhHHHHHHhcceeeeeccccc
Confidence            2  78888889999999988777643

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.00  E-value=4.7e-05  Score=60.91  Aligned_cols=67  Identities=15%  Similarity=0.047  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           64 NQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      ..++...+...+.++++.|+. +.|++..++|.+.++..+...+++++.|+++||+ +|+|.+.....+
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            334444455556799999988 4999999999999999999999999999999996 988888776543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.00  E-value=0.007  Score=63.92  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039271          475 SIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVM  536 (609)
Q Consensus       475 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~  536 (609)
                      +.|.++..++..|+-.+..+......+.+..|++.|..++|+....-.+|..++..+.-++.
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45666667788888888888888888899999999999999999999999988877765543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.00012  Score=71.20  Aligned_cols=154  Identities=12%  Similarity=0.101  Sum_probs=97.8

Q ss_pred             HHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCc
Q 039271           80 VLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFIS  159 (609)
Q Consensus        80 ~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (609)
                      .-|+-+++|+...+++..........+++..+.|-|+|+- |||+..+.-.+.+++.++    .                
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYiLsCi----T----------------  118 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYILSCI----T----------------  118 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHHHHHH----h----------------
Confidence            3466678899999999888888888888899999999995 999987766555444333    1                


Q ss_pred             cCCCcchhHHHHHHHHHHHHHhhcCchhhhhh-hhhccCCCCChhhhhccchhHHH-HHHHHhhhHHHHhhhhhhccccc
Q 039271          160 CKPLSSIFAAIFYLSIYLIAFGYGGHQPTLAT-FGADQFDESKPKERQSKTLFFCY-FYFFLNVGSLFSNTILVYYEDSG  237 (609)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~~~~i~~~l~~~~  237 (609)
                         -.++++-.++++|++.|+......++.-+ +++|..+++.-. .+=....++- ..+.+.+-++++...+..+.+.+
T Consensus       119 ---KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~  194 (454)
T KOG4332|consen  119 ---KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF  194 (454)
T ss_pred             ---hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence               11255677899999999988877765544 455544222100 0001111222 22344455555665666666654


Q ss_pred             --chhHHHHHHHHHHHHHHHHHH
Q 039271          238 --KWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       238 --g~~~~f~~~~~~~~~~~~~~~  258 (609)
                        |.-.+|..+++...++..+.+
T Consensus       195 slGPVAPFdAAacfLaigmAvil  217 (454)
T KOG4332|consen  195 SLGPVAPFDAAACFLAIGMAVIL  217 (454)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHH
Confidence              566778777766666655543

>TIGR00788 fbt folate/biopterin transporter

Probab=97.99  E-value=2.3e-05  Score=85.83  Aligned_cols=135  Identities=10%  Similarity=-0.054  Sum_probs=106.0

Q ss_pred             HHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCCCCCCccCC
Q 039271           84 TRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLS-FLMIKPTGCGDGFISCKP  162 (609)
Q Consensus        84 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  162 (609)
                      .+.+|.++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.+...... ..+.. .+          
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~-~g----------  347 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA-FG----------  347 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc-cC----------
Confidence            457899999999999999999999999999999995 999999999888877665443211 00000 00          


Q ss_pred             CcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccc
Q 039271          163 LSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGK  238 (609)
Q Consensus       163 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g  238 (609)
                        ..+.+.++...++.+++.+....+...++.+..|++.      +++.++++....|+|..+++.+++++.+..|
T Consensus       348 --i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       348 --ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             --CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence              0122334455567778888878888999999999998      9999999999999999999999999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.83  E-value=1.1e-05  Score=84.46  Aligned_cols=180  Identities=12%  Similarity=0.030  Sum_probs=123.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhH--------HHHHHHHHHH-HHHhHHHHHhhhccchhHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAAN--------NVSKWTGTVY-MCSLIGAFLSDSYWGRYLTC  126 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~--------~~~~~~~~~~-~~~~~~G~laDr~~Grr~~~  126 (609)
                      +.++..+..++..-+++|+...+...-++ .+|..+++...        ...+...+.. .+.++..++.|++ |||+..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            56777778888888889987666555444 45554444332        1112222222 2566678889995 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHH-HHHHhhcCchhhhhhhhhccCCCCChhhh
Q 039271          127 AVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIY-LIAFGYGGHQPTLATFGADQFDESKPKER  205 (609)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (609)
                      +.+.+++.+..+.++...  +       +         ..+-..+++.-. .+-++.-+.....-.+-+|.||++.    
T Consensus       382 ~~GF~~~~i~~~~~~~~y--~-------~---------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv----  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPY--N-------Q---------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV----  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCc--c-------c---------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH----
Confidence            999988887776665541  1       0         001111222222 2334555556666777899999999    


Q ss_pred             hccchhHHHHHHHHhhhHHHHhhhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhcC
Q 039271          206 QSKTLFFCYFYFFLNVGSLFSNTILVYYED-----SGKWTLGFLVSLASAVIALLSYLMGT  261 (609)
Q Consensus       206 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~-----~~g~~~~f~~~~~~~~~~~~~~~~~~  261 (609)
                        |+...|+.....-.|+++|...-.++.+     ..|.+.+|++.+.+++++.+.-++.+
T Consensus       440 --R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  440 --RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             --hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence              9999999999999999999988888988     77899999999999888887665543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.77  E-value=0.0005  Score=76.29  Aligned_cols=183  Identities=12%  Similarity=-0.022  Sum_probs=102.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFG-VGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~  132 (609)
                      .+|.....+....+..++-+. +..|.+.. -+..|.+... .+...+..+...++..++.++.||+ |||+.++.+...
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            345455455555555554443 33444444 4556766544 5556667777888888889999995 999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHH-HHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIY-LIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +.++.++++...........          ......+..++..+ .......+..|..+.+.+|.||.+.      |+.+
T Consensus       369 m~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~  432 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYPN----------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKG  432 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCC----------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhhh
Confidence            99999888776422100000          00011122222222 2333344456677789999999988      7777


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHH
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALL  255 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  255 (609)
                      .++....+.+...+-......+.+..++...|.+.+....+...
T Consensus       433 ~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  433 ASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            77744444443333222222233333233445544444444443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.74  E-value=0.085  Score=56.71  Aligned_cols=192  Identities=8%  Similarity=-0.065  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      ..+.+....++.+.+--..-.-.+.|+.+-+.-+.--++..-..-.+...++.+.-|...||. .|.+++..+.+..-+.
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS   81 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence            345555566666666555555667777765443444444444555677788888899999996 9999888887655333


Q ss_pred             HHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHH-HhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          137 LVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIA-FGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      ..+.+..........       .....+......+++...+.+ +..=+......++=-|+...-..+....+.+.-+..
T Consensus        82 v~~s~~~~~~l~~~~-------~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~m  154 (432)
T PF06963_consen   82 VAASCALFLLLLSYP-------SSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATM  154 (432)
T ss_pred             HHHHHHHHHHHHhCC-------ccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHH
Confidence            322221111000000       000000111122222222221 111111111112222332211100000022222222


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      .=.=.+--++||++.|.+....+.....++.++..++.+.+
T Consensus       155 RRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  155 RRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            22223567889999999998888887777777776666654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.69  E-value=0.00063  Score=74.37  Aligned_cols=137  Identities=12%  Similarity=0.042  Sum_probs=85.3

Q ss_pred             cchhHHHHHHHHHhhhhhhhhc-cccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q 039271          402 SAFDICSVLICTGIYRKILVPV-AGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQI  480 (609)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i  480 (609)
                      .........+...+.+++.|+. ++|           +.+.+|.++.+++.+.+....               .+.....
T Consensus        51 ~~~~~~~~~l~~ligG~LaDRilGrr-----------r~iliG~il~~lg~lll~~~~---------------~~~~~~~  104 (493)
T PRK15462         51 FSAYCSLVYVTPILGGFLADKVLGNR-----------MAVMLGALLMAIGHVVLGASE---------------IHPSFLY  104 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHHHHHHHHhh---------------cchhHHH
Confidence            3333344444555555554443 332           346788888888766554311               1112233


Q ss_pred             HHHHHHHHHHHhhhhhhHHHhhhcCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhh
Q 039271          481 PQYVLVGASEVFMYVGQLEFFNGQAPDG--IKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMD  558 (609)
Q Consensus       481 ~~~~l~g~g~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  558 (609)
                      ....+..+|.+...+...+++.+.+|++  .|+++.++.+...++|+.+++.+.+++.+..                ++.
T Consensus       105 l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~  168 (493)
T PRK15462        105 LSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWA  168 (493)
T ss_pred             HHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChH
Confidence            3444555666666677778899999875  7999999999999999999999998775321                234


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc
Q 039271          559 RFYFLLAVLTAFDFVIYLICAN  580 (609)
Q Consensus       559 ~~f~~~a~~~~v~~v~~~~~~~  580 (609)
                      ..|.+.++.++++.+.+++..+
T Consensus       169 ~~F~iaaigm~l~li~~~~~~~  190 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLCGNR  190 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            4566666666666665554433

>PTZ00207 hypothetical protein; Provisional

Probab=97.68  E-value=0.0014  Score=73.06  Aligned_cols=116  Identities=8%  Similarity=0.069  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH
Q 039271          438 QRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC  517 (609)
Q Consensus       438 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~  517 (609)
                      ..+.+|.++..++.++.+.....          ....+.+.+++..++.|+|.....+.....+.+.+| +.||.+.|+.
T Consensus        92 ~vllig~ll~~iG~ll~ala~~~----------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~  160 (591)
T PTZ00207         92 PIFVLSMTVFCLGTLLFALTFQE----------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIM  160 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc----------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHH
Confidence            46888999999998887774210          011356667777788999998888888888888887 5699999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 039271          518 MASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANW  581 (609)
Q Consensus       518 ~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  581 (609)
                      .+...+|+.+.+.+...+..                 .++..+|++.+++.++..++.+.+.+.
T Consensus       161 ~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        161 KTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            99999999764443332221                 012346777777777766666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.62  E-value=0.0024  Score=68.71  Aligned_cols=163  Identities=12%  Similarity=0.047  Sum_probs=102.5

Q ss_pred             ccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHH
Q 039271          399 ASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFW  478 (609)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  478 (609)
                      +++.+...++..+..+..+.+.    .|...      .++-+..|.+++.++-+++...+..          ++. ..++
T Consensus        74 G~viaa~slg~~i~~liF~~Ws----~k~~~------~k~Pli~s~ii~~~g~llY~~l~~~----------~~~-~~y~  132 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWS----NKTGS------VKKPLIVSFLIAIIGNLLYLALAYV----------PNG-VKYL  132 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccc----cccCC------cccCHHHHHHHHHHHHHHHHHHHhc----------ccc-hHHH
Confidence            4455556777777777776652    22211      1112788899999998888665533          112 5678


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhh
Q 039271          479 QIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMD  558 (609)
Q Consensus       479 ~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  558 (609)
                      ++++.++.|+|.+-.... =.|+.+....+.|.++++.......+|..+||.+...+..+...+  ..+.++ .....++
T Consensus       133 mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~-~~~n~YT  208 (488)
T KOG2325|consen  133 MLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPG-LIFNMYT  208 (488)
T ss_pred             HHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCc-ceEEecc
Confidence            888999999986555433 367777666677888888887777788888877766554332221  122221 2222333


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccc
Q 039271          559 RFYFLLAVLTAFDFVIYLICANWYKGIN  586 (609)
Q Consensus       559 ~~f~~~a~~~~v~~v~~~~~~~~~~~~~  586 (609)
                      ..-|+.+++.++..++..++.+|..+..
T Consensus       209 ap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  209 APAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            4457778888888888888877765443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.50  E-value=0.0015  Score=67.18  Aligned_cols=150  Identities=15%  Similarity=0.085  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccch-hHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFL-TRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGR-YLTCAVFQLIFVV  135 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~~~~~~~~~~~  135 (609)
                      .+..+....+...-.|...-+...++ .+.+|.++.+.|-+.+...+...+.+..-+...||+.|. +-.+..++.....
T Consensus       262 ~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP  341 (451)
T KOG2615|consen  262 VLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVP  341 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHH
Confidence            34444443333333333333334444 456899999999888888888888888888888886333 3344444444444


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      ..+++...                      .....+.++..+-.+..+...+....++....|+++      ||...|..
T Consensus       342 ~~llls~~----------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~  393 (451)
T KOG2615|consen  342 AFLLLSLA----------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIF  393 (451)
T ss_pred             HHHHHhcc----------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHH
Confidence            44444444                      334567778888888888889999999999999988      99999999


Q ss_pred             HHHHhhhHHHHhhhhhhccc
Q 039271          216 YFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~  235 (609)
                      .....++-++||.++|.+..
T Consensus       394 ~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  394 RSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHhhhhhhheeEE
Confidence            99999999999999987765

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.055  Score=55.93  Aligned_cols=60  Identities=13%  Similarity=0.135  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039271          478 WQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMG  537 (609)
Q Consensus       478 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~  537 (609)
                      ..+..+.+.....-..+.+..++..+.+++...|+.|.+.|+..++|+.--..+..++.+
T Consensus       371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            344455666665556667777899999999999999999999999987554455554544

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.44  E-value=0.0035  Score=67.33  Aligned_cols=81  Identities=10%  Similarity=0.055  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH
Q 039271          438 QRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC  517 (609)
Q Consensus       438 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~  517 (609)
                      +.+.++++..++..++.++..                +...+...-++.|++++..+ +...++++.+|++.|+++.|++
T Consensus        93 ~vL~l~~l~Wsl~t~L~~fa~----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~  155 (511)
T TIGR00806        93 PVLVLQALSFVCVWLLLLLGT----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS  155 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence            357777777777777777743                56677888899999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 039271          518 MASISFGNYVSSLLVVMV  535 (609)
Q Consensus       518 ~~~~~lg~~ig~~~~~~i  535 (609)
                      +....+|.++++.+.+++
T Consensus       156 ~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       156 RAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999873

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.11  E-value=0.0063  Score=67.70  Aligned_cols=151  Identities=11%  Similarity=-0.032  Sum_probs=107.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchh---hhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHH-HHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENA---NAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTC-AVF  129 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~-~~~  129 (609)
                      .+|.+...++..+.....||.+..+.|......++-+..   +.++......++..++.++.|.+.-++ +|-|-. +++
T Consensus       308 ~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~  386 (599)
T PF06609_consen  308 DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFG  386 (599)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHH
Confidence            346677777788888888888888888887777766553   567888888888889999999999885 776644 466


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccc
Q 039271          130 QLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKT  209 (609)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  209 (609)
                      .+++.+++.+++.. .|                   .|....+...++.|++.|...........-..|++.      .+
T Consensus       387 ~~~~ta~~Gama~~-~~-------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig  440 (599)
T PF06609_consen  387 SVLMTAFCGAMAAV-RP-------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IG  440 (599)
T ss_pred             HHHHHHHHHHHHHc-cC-------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HH
Confidence            55555555544443 11                   233344566777888888877666666666667666      88


Q ss_pred             hhHHHHHHHHhhhHHHHhhhhh
Q 039271          210 LFFCYFYFFLNVGSLFSNTILV  231 (609)
Q Consensus       210 ~~~~~~~~~~~ig~~~~~~i~~  231 (609)
                      ...++....-.+|+.+|..+-.
T Consensus       441 ~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  441 TATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHH
Confidence            8888888888888888766544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK03612 spermidine synthase; Provisional

Probab=97.03  E-value=0.037  Score=61.23  Aligned_cols=175  Identities=13%  Similarity=0.070  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVG  136 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~  136 (609)
                      .++.+++...+..+.+=   ......+...+|-+....+.+++++..+..++..++|+++++- -|+- ...-..+-.++
T Consensus        18 ~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~-~~~e~~i~l~~   92 (521)
T PRK03612         18 LLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGF-VAVELLLALLG   92 (521)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH-HHHHHHHHHHH
Confidence            33444444444444433   4444555666788889999999999999999999999887552 2222 21111111111


Q ss_pred             HH--HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          137 LV--LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      .+  .+.....+..                ......++...++.++..|+..|....+..+... ++      -+...|.
T Consensus        93 ~~~~~ll~~~~~~~----------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~  149 (521)
T PRK03612         93 GLSALILYAAFAFQ----------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVAT  149 (521)
T ss_pred             HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhh
Confidence            11  1111100100                0111222333445677788888777666654322 11      3355778


Q ss_pred             HHHHHhhhHHHHhhhhhhccc-ccchh-HHHHHHHHHHHHHHHHHHh
Q 039271          215 FYFFLNVGSLFSNTILVYYED-SGKWT-LGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~-~~g~~-~~f~~~~~~~~~~~~~~~~  259 (609)
                      .|....+|+++|.++.+++.- ..|-. ..++++.+..++++++++.
T Consensus       150 ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~  196 (521)
T PRK03612        150 VLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL  196 (521)
T ss_pred             hHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999886554 56744 4444444444444444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.99  E-value=0.0042  Score=65.49  Aligned_cols=185  Identities=16%  Similarity=0.057  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH-HHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYL-TCAVFQLIFVV  135 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~~~~~~~~~~~  135 (609)
                      .+.+++++.......||+..+.+-.-+ ..-|.+...+|++.....++++++..++|.+.||. ...| +++.......+
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALV  344 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHH
Confidence            455555555556566665555543222 23466668899999999999999999999999995 5433 44444444444


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +...+...+.                  .....++++..-.+.|++..+..|...-+..|..-+..+      +...|+.
T Consensus       345 ~~~~l~~~t~------------------~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~tSsGll  400 (480)
T KOG2563|consen  345 GTLMLLTCTL------------------FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------GTSSGLL  400 (480)
T ss_pred             HHHHHHHhhc------------------cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------cccceeE
Confidence            4322222211                  112345566666777888888888888888887544442      2334555


Q ss_pred             HHHHhhhHHHHhhhhhhcccccc----hhHHHHHHHHHHHHHHHHHHhcCCcceec
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGK----WTLGFLVSLASAVIALLSYLMGTPGYRYV  267 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g----~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  267 (609)
                      +...++-+++=..+-+.+.+..+    +...-+......+++.++..+.++.+++.
T Consensus       401 ~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  401 NLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             EeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            55556655555566666666554    33333444444555555555666655443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.97  E-value=0.021  Score=52.34  Aligned_cols=106  Identities=13%  Similarity=0.133  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHH
Q 039271           96 NNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSI  175 (609)
Q Consensus        96 ~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (609)
                      .-.++......+..++...+.+++ |.|+.++++.+.+.+-.+... .                      .+.+.++.+-
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~-~----------------------~~~~~l~~~s   96 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFF-Y----------------------PNSYTLYPAS   96 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-h----------------------hhHHHHHHHH
Confidence            445666777788888889999995 999999999887664333221 1                      4567888899


Q ss_pred             HHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhh
Q 039271          176 YLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILV  231 (609)
Q Consensus       176 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~  231 (609)
                      ++.|++.+..+.....++.+..+++.      |++..+++....+.+.++|.++.-
T Consensus        97 ~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   97 ALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877666      777778777777777776665543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.92  E-value=0.03  Score=60.15  Aligned_cols=149  Identities=14%  Similarity=0.013  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 039271           63 ANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSV  142 (609)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~  142 (609)
                      +...+-.++.-+....+..|+..+ |++...+|..-+...+....+.++..++.+|+ |..|.=++++........+...
T Consensus       265 ~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~  342 (432)
T PF06963_consen  265 FALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVV  342 (432)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHH
Confidence            333333344445567788998865 99999999999999999999999999999996 9999999998877665555554


Q ss_pred             HhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhh
Q 039271          143 LSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVG  222 (609)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  222 (609)
                      +.+....            +....+...++.+.++.=+|.=++--+...++.|..|+++      ||...|..+...++.
T Consensus       343 ~~~~~~~------------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf  404 (432)
T PF06963_consen  343 SFWAPGS------------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLF  404 (432)
T ss_pred             HHhcCCC------------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHH
Confidence            4322110            0012456666667776667777777888999999999888      999999999999998


Q ss_pred             HHHHhhhhh
Q 039271          223 SLFSNTILV  231 (609)
Q Consensus       223 ~~~~~~i~~  231 (609)
                      -++..+++-
T Consensus       405 ~ll~~~~~i  413 (432)
T PF06963_consen  405 ELLSFVLTI  413 (432)
T ss_pred             HHHHHHHHh
Confidence            888765543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.80  E-value=0.0061  Score=66.17  Aligned_cols=150  Identities=15%  Similarity=0.073  Sum_probs=114.8

Q ss_pred             chhHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHH-HHhhhccchhHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFG-VGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGA-FLSDSYWGRYLTCAVFQLI  132 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G-~laDr~~Grr~~~~~~~~~  132 (609)
                      .|..+.+++..++....-.+ ....+..|+...++.+..+.+...+.......++.++.. .+.-. +|-|+++..|++.
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLS  317 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHH
Confidence            34444444443333332221 221335677778999999999999999999999999998 55666 6999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      ..+...+.++.                      ++.|+.+....+.+ ......|..-++++.+.++++      +|+.+
T Consensus       318 ~~~~~~~~af~----------------------~~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~  368 (463)
T KOG2816|consen  318 EFLQLLLFAFA----------------------TETWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVF  368 (463)
T ss_pred             HHHHHHHHHHh----------------------ccchhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchh
Confidence            99999999998                      66777777776654 356778888999999999998      99999


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcc
Q 039271          213 CYFYFFLNVGSLFSNTILVYYE  234 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~  234 (609)
                      ++....-++.++++|.+-+.+.
T Consensus       369 ~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  369 GIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHH
Confidence            9999999999888888876553

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.72  E-value=0.29  Score=53.56  Aligned_cols=169  Identities=12%  Similarity=0.028  Sum_probs=95.6

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC---CchhhhhHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHH
Q 039271           52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQ---QENANAANNVSKWTG-TVYMCSLIGAFLSDSYWGRYLTCA  127 (609)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~  127 (609)
                      +..+++++.+.+..++-.+.|....     -+.+.+=   .++..+..+-....+ +..+...+-.+++|++ +|.+++.
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy   93 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFY   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            3446677777777666666544221     1222221   233344444332222 4556677789999996 9999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc--CCC-CCCCCCCccCCCcchh---------HHHHHHHHHHHHHhhcCchh-hhhhhhh
Q 039271          128 VFQLIFVVGLVLLSVLSFLMI--KPT-GCGDGFISCKPLSSIF---------AAIFYLSIYLIAFGYGGHQP-TLATFGA  194 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~l~g~~~~~~~~-~~~~~~~  194 (609)
                      .....+.....+.++...|+-  .++ ..++.-   ....+..         .|...+.-++.-+-...+.+ ..+++..
T Consensus        94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~---~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN  170 (491)
T PF03219_consen   94 IIIIPFLGFFALFAFVLYPNRDILHPDAFADKL---LAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFAN  170 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHh---hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877777776666555542  111 111000   0000000         01111111111111112222 4689999


Q ss_pred             ccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc
Q 039271          195 DQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       195 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  235 (609)
                      |.++.++      -.+.+++++.+.|+|.++++.+..++.+
T Consensus       171 ~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  171 EITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             hcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887      5588999999999999999988887776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.70  E-value=0.039  Score=61.30  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=77.6

Q ss_pred             HHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhc
Q 039271          104 TVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYG  183 (609)
Q Consensus       104 ~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  183 (609)
                      .........+.+-|+. |||.....+..+..++.+..+..  +.                 ....+..++...+..++.+
T Consensus       362 ~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~  421 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWL--PD-----------------DLGGWLHWILPLLGKFFIG  421 (521)
T ss_pred             HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHh--hc-----------------cchhHHHHHHHHHHHHHHH
Confidence            5555566668999995 99999999999888888877776  11                 0111234444444444455


Q ss_pred             CchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc
Q 039271          184 GHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  235 (609)
                      ...-....+.+|++|+..      |..+.+.......+|++++|.+......
T Consensus       422 ~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  422 SAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555566889999999988      9999999999999999999987755544

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.68  E-value=0.018  Score=64.85  Aligned_cols=173  Identities=14%  Similarity=0.143  Sum_probs=115.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHH-HHHHHHHHhHHHHHhhhc-cchhHHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKW-TGTVYMCSLIGAFLSDSY-WGRYLTCAVFQLIFV  134 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~G~laDr~-~Grr~~~~~~~~~~~  134 (609)
                      .....++...++...+.++.+++|.|+++++|++...+..+.+.. .-+..++.+++|++.-|+ +.-|.+..+.++...
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            456777889999999999999999999999999999999888655 556778899999999986 334555555555444


Q ss_pred             HHHHHHHHHhh------------------hccCCC-----CCCC--------------------------C---------
Q 039271          135 VGLVLLSVLSF------------------LMIKPT-----GCGD--------------------------G---------  156 (609)
Q Consensus       135 ~~~~~~~~~~~------------------~~~~~~-----~~~~--------------------------~---------  156 (609)
                      +..+......+                  |....+     .||.                          |         
T Consensus       473 l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~  552 (735)
T KOG3626|consen  473 LSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSD  552 (735)
T ss_pred             HHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCC
Confidence            44433221110                  000010     1554                          1         


Q ss_pred             ----C--CccCC----------------CcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          157 ----F--ISCKP----------------LSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       157 ----~--~~~~~----------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                          |  =+|.+                .-...+..+++..++..+..+...+....++-..+++++      |..++|+
T Consensus       553 ~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~  626 (735)
T KOG3626|consen  553 GNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGF  626 (735)
T ss_pred             CceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHH
Confidence                1  11222                112334445555555555555555677778888999998      9999999


Q ss_pred             HHHHHh-hhHHHHhhhhhhccc
Q 039271          215 FYFFLN-VGSLFSNTILVYYED  235 (609)
Q Consensus       215 ~~~~~~-ig~~~~~~i~~~l~~  235 (609)
                      ..+... +|.+-+|++-|+++|
T Consensus       627 ~~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  627 QWMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             HHHHHHHHhcCCchHhhhhhHh
Confidence            777665 567779999999987

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.67  E-value=0.00034  Score=77.63  Aligned_cols=141  Identities=13%  Similarity=0.100  Sum_probs=3.0

Q ss_pred             cccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhc-
Q 039271          386 VMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKY-  464 (609)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-  464 (609)
                      ..+.+++--....+.+.+.+-++.++...++..+    +.|. .      +.+-+++|.++++++.+++..=+-...++ 
T Consensus        28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~----g~~~-h------rprwig~g~~~~~~g~~l~~lPhf~~~~y~   96 (539)
T PF03137_consen   28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYF----GGRG-H------RPRWIGIGALLMGLGSLLFALPHFLSGPYS   96 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhc-C------CcceeeecHHHHHHHHHHHhccHhhcCCCc
Confidence            3444433335556777777877777777776654    4442 1      22236777777777766654322111100 


Q ss_pred             -c------------CCCC--------------------CcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhH
Q 039271          465 -I------------SPGE--------------------KASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKS  511 (609)
Q Consensus       465 -~------------~~~g--------------------~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~  511 (609)
                       .            ++.+                    +.......+++++.++.|+|....++...+|+.|.++++.-+
T Consensus        97 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~sp  176 (539)
T PF03137_consen   97 YEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSP  176 (539)
T ss_dssp             -------------------------------------------------------SSS----------------------
T ss_pred             cccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCc
Confidence             0            0001                    011223466788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039271          512 FGSSLCMASISFGNYVSSLLVVMVMG  537 (609)
Q Consensus       512 ~~~g~~~~~~~lg~~ig~~~~~~i~~  537 (609)
                      .+.|+.++...+|-++|..+.+...+
T Consensus       177 lYiGi~~~~~~lGPa~Gf~lg~~~L~  202 (539)
T PF03137_consen  177 LYIGILYAMSILGPALGFLLGSFCLR  202 (539)
T ss_dssp             --------------------------
T ss_pred             cchhhhhHHhhccHHHHHHHHHHHHh
Confidence            99999999999998888777776554

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.64  E-value=0.021  Score=46.23  Aligned_cols=69  Identities=12%  Similarity=-0.064  Sum_probs=58.8

Q ss_pred             HhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 039271           73 FGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVL  143 (609)
Q Consensus        73 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~  143 (609)
                      +.+.+.+| .+.++.++|.++.+++-+.-.+++.++.+...++.++. .+++.+..+.+...+..+.+++.
T Consensus         9 FayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    9 FAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555 56778999999999999999999999999999999994 88999999988888888777776

Note that many members are hypothetical proteins.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.31  E-value=2.1  Score=46.22  Aligned_cols=168  Identities=12%  Similarity=0.004  Sum_probs=102.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC---CchhhhhHHHHHHHH-HHHHHHhHHHHHhhhccchhHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQ---QENANAANNVSKWTG-TVYMCSLIGAFLSDSYWGRYLTCAVF  129 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~~~~~  129 (609)
                      .+++++.+.+..++-.+.++.+.     -+.+.+.   .++..+.++-+..-+ +..+..++-+++.+++ -|.+++...
T Consensus        25 E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~   98 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence            35677777776666666544322     2344443   345555666666655 7788888999999995 999999998


Q ss_pred             HHHHHHHHHHHHHHhhhcc--CCCC-CCC-CCCccCC-C--------cchhHHHHHHHHHHHHHhhcCchhhhhhhhhcc
Q 039271          130 QLIFVVGLVLLSVLSFLMI--KPTG-CGD-GFISCKP-L--------SSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQ  196 (609)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~~~~-~--------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  196 (609)
                      ...+....+++++...|.-  .++. ... -.++.++ .        +.++...+++.-=+.|  .=...-..+.+..|.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg--slV~S~lFw~faNei  176 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG--SLVLSLLFWQFANEI  176 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence            8888888888887766641  1110 000 0000000 0        0011112222211221  111122557888898


Q ss_pred             CCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccc
Q 039271          197 FDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYED  235 (609)
Q Consensus       197 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~  235 (609)
                      +..++      -.+.+++++...|++..+++.+..++..
T Consensus       177 tt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         177 TTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             hhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88877      6688999999999999999999888876

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.60  E-value=0.12  Score=54.73  Aligned_cols=124  Identities=13%  Similarity=0.058  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcc---hhHHHHH
Q 039271          439 RMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDG---IKSFGSS  515 (609)
Q Consensus       439 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~---~r~~~~g  515 (609)
                      .+.+|.++..+|.+++......   ...    +.+.+...++.+++++++|.+..=|....+..++++++   .|.....
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~---~~~----~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~   75 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIP---PSL----PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFN   75 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTS---SSC----------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhc---chh----hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence            5778888888888885554311   000    11223467788888999999999999999999999876   4555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccccc
Q 039271          516 LCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGI  585 (609)
Q Consensus       516 ~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~  585 (609)
                      .++...++|..++..+.+++.+                ..++...|++.++.++++.+.++...+++++.
T Consensus        76 ~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   76 WFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             HHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            6777788888888777666542                12345578888888899988888777776665

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.12  E-value=5.4  Score=42.27  Aligned_cols=58  Identities=22%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 039271          475 SIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLV  532 (609)
Q Consensus       475 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~  532 (609)
                      +-+|++....++|++.+-...-...++.+..|++.+..+..+.......|-..|..+.
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4467777778888888877777777888888888888888887777777776665543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.06  E-value=1.7  Score=49.64  Aligned_cols=59  Identities=41%  Similarity=0.682  Sum_probs=53.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          475 SIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVV  533 (609)
Q Consensus       475 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~  533 (609)
                      +.+|+++++++.+.||++..+..+++.++.+|+++|+.+++++....++|+.+...+..
T Consensus       564 ~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~  622 (654)
T TIGR00926       564 SILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAE  622 (654)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999987766544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.83  E-value=0.54  Score=46.68  Aligned_cols=90  Identities=12%  Similarity=0.087  Sum_probs=60.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHH
Q 039271          436 ELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSS  515 (609)
Q Consensus       436 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g  515 (609)
                      +...+.+|.+...+|+..+......+         ..+.+.|.+....++.+.+......+......+.+|+ .||++.|
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~~---------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvg  134 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSGR---------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVG  134 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCc---------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceeh
Confidence            55567888888888887665543220         1123455555555666666666666666666688985 6999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 039271          516 LCMASISFGNYVSSLLVVMV  535 (609)
Q Consensus       516 ~~~~~~~lg~~ig~~~~~~i  535 (609)
                      +.-...++++.+-+.+...+
T Consensus       135 ilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  135 ILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             hhhHHHHhHHHHHHHHHHHH
Confidence            99999898886665555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.80  E-value=0.17  Score=53.63  Aligned_cols=62  Identities=8%  Similarity=-0.012  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhc
Q 039271          166 IFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYY  233 (609)
Q Consensus       166 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l  233 (609)
                      ++.|..++..+..|+..|..+.+....+.|..++++      |...++...++-++|..++..++-++
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            457777778888899999999999999999888777      88899999999999999888776544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.77  E-value=0.43  Score=51.46  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhhCCc----hhhhhHHHHHHHHHHHHHHhHHHHHhhhccchh-------HHHHHHHHHHHHHHHHHHHHhh
Q 039271           77 VNLVLFLTRVLQQE----NANAANNVSKWTGTVYMCSLIGAFLSDSYWGRY-------LTCAVFQLIFVVGLVLLSVLSF  145 (609)
Q Consensus        77 ~~~~~yl~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-------~~~~~~~~~~~~~~~~~~~~~~  145 (609)
                      +.+..|..+..+.+    .-...+..+.-.+...++.|+..++--+. +++       .-+.++..+...+.+++.....
T Consensus       305 ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~  383 (498)
T COG3104         305 SSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGI  383 (498)
T ss_pred             chHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            45556654432211    12345666777777777777777776663 443       2455555555555555544411


Q ss_pred             hccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHH
Q 039271          146 LMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLF  225 (609)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~  225 (609)
                      -.            ..+.+..+.+.+....+++++|.=+..|...++++...|+.-      .+..++++.+....|..+
T Consensus       384 ~~------------~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l  445 (498)
T COG3104         384 WF------------GGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTL  445 (498)
T ss_pred             hh------------cCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHh
Confidence            11            001112567888899999999999999999999999999877      778888888888888888


Q ss_pred             Hhhhhhh------cccccchhHHHHHHHHHHHHHHHHH
Q 039271          226 SNTILVY------YEDSGKWTLGFLVSLASAVIALLSY  257 (609)
Q Consensus       226 ~~~i~~~------l~~~~g~~~~f~~~~~~~~~~~~~~  257 (609)
                      +..+++.      ..+.......|+..+.......+..
T Consensus       446 ~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         446 GGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             hceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            8777763      1222334455666554444433333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.52  E-value=0.75  Score=49.85  Aligned_cols=116  Identities=18%  Similarity=0.159  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcC---CcchhHHH
Q 039271          437 LQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQA---PDGIKSFG  513 (609)
Q Consensus       437 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~---p~~~r~~~  513 (609)
                      +.-+.++.++..++.+.++....            ...+........++..+|..+.-...-+...|..   |.+ +|..
T Consensus        59 ~~Y~~i~~~~~~~~~~~~~~~~~------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~l  125 (433)
T PF03092_consen   59 KPYMIIGWLLGAVSALVLALLPA------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDL  125 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccc------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHH
Confidence            34567777777666665555421            1223344455567778888888888877777766   444 7788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 039271          514 SSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANW  581 (609)
Q Consensus       514 ~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  581 (609)
                      ++.......+|+.++..+.|.+.+..                ++...|.+.+.+.++..+..+++.+|
T Consensus       126 qS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  126 QSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            88888889999999988888665321                11223566666666665555556665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.23  E-value=0.29  Score=52.01  Aligned_cols=93  Identities=16%  Similarity=-0.022  Sum_probs=63.1

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hC-C---------------chhhhhHHHHHHHHHHHHHHhHH
Q 039271           50 KNKGGWKYASILLANQGLATLAFFGVGVNLVLFLTRV-LQ-Q---------------ENANAANNVSKWTGTVYMCSLIG  112 (609)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~g-~---------------~~~~~~~~~~~~~~~~~~~~~~~  112 (609)
                      ..+..+|.++.+++...+.+++++...-+..-++-++ ++ -               ....-.|-+.+..+...+.++..
T Consensus       273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~  352 (498)
T KOG0637|consen  273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV  352 (498)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            3455678888899998888888876655555555332 11 1               11112345677788889999999


Q ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 039271          113 AFLSDSYWGRYLTCAVFQLIFVVGLVLLSVL  143 (609)
Q Consensus       113 G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~  143 (609)
                      -++.||+ |-|+.+..+...+.++..+..+.
T Consensus       353 ~~l~~~~-g~r~~y~~~~~~f~~~~~~~gl~  382 (498)
T KOG0637|consen  353 EKLSRKF-GTRKRYWGGVNAFGLATGLAGLV  382 (498)
T ss_pred             HHHHHhc-CcceEEeehhHHHHHHHHHHhhh
Confidence            9999996 97777777776566666555544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.92  E-value=2.1  Score=46.35  Aligned_cols=118  Identities=18%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHH
Q 039271          101 WTGTVYMCSLIGAFLSDSY--WGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLI  178 (609)
Q Consensus       101 ~~~~~~~~~~~~G~laDr~--~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  178 (609)
                      ...+..++..+.+.+++|.  +||++++..+..+..++.++.-+. .|.-.+  ..+=.+.. ...+++....++.-++.
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~-~p~dap--~~~t~~~~-~~~~~~~~~~~ii~~l~  363 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS-FPNDAP--LRPTDSPP-LLFTPSYYLALIIGFLL  363 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc-ccccCC--CCCCcccc-cccccchhHHHHHHHHH
Confidence            3445555566666776553  589999999988887777766554 332110  00000000 01123355666677788


Q ss_pred             HHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhh
Q 039271          179 AFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI  229 (609)
Q Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  229 (609)
                      |++-+..+...+.++++.+| ++      |..+++++-+...+++.++-..
T Consensus       364 G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  364 GFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999995 44      6667777666666666554333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.42  E-value=19  Score=39.09  Aligned_cols=59  Identities=14%  Similarity=0.090  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          475 SIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVV  533 (609)
Q Consensus       475 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~  533 (609)
                      +-++.++.++++|+..+........+..+..+++.|..+..+....-.+|-.+|+.+.-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666889999999888888888888888899999999998888888888877644

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.53  E-value=5.9  Score=36.26  Aligned_cols=83  Identities=10%  Similarity=0.105  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHH
Q 039271          436 ELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSS  515 (609)
Q Consensus       436 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g  515 (609)
                      +++.+.+|.+..++-.+.+.+                 .+.+.++++-.+.|++..+.-.+.-.++.+...++.+++-.+
T Consensus        66 ~K~sm~lg~~~y~~y~~~~~~-----------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~  128 (156)
T PF05978_consen   66 PKWSMILGSLGYAIYIASFFY-----------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG  128 (156)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence            345566666666544443332                 245677888899999999988888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 039271          516 LCMASISFGNYVSSLLVVMV  535 (609)
Q Consensus       516 ~~~~~~~lg~~ig~~~~~~i  535 (609)
                      +......++..+|..+...+
T Consensus       129 ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  129 IFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99988888888887766544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.88  E-value=0.97  Score=48.95  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhh
Q 039271          167 FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTI  229 (609)
Q Consensus       167 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i  229 (609)
                      +-+..++..++.|+..|........+..+..++++      |..+-.+..++.++|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667888999999998888888888887765      6666677777888887777654

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.51  E-value=1.6  Score=44.97  Aligned_cols=101  Identities=11%  Similarity=0.059  Sum_probs=60.1

Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 039271          473 SLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDL  552 (609)
Q Consensus       473 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~  552 (609)
                      ..++|+....+++......+..+.....+++....+.-|...|++-++.-+=..   .+.-.+.+..+.+     +.-..
T Consensus       323 t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQs---ilT~iVvd~~g~~-----L~ir~  394 (433)
T KOG3810|consen  323 TQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQS---ILTLIVVDDRGLG-----LDIRT  394 (433)
T ss_pred             ccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHH---hheEEEEcccccC-----CCcce
Confidence            457899999999998888888877777777777777777777776654333322   2222222211110     00000


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhhhccc
Q 039271          553 NTGHMDRFYFLLAVLTAFDFVIYLICANW  581 (609)
Q Consensus       553 ~~~~~~~~f~~~a~~~~v~~v~~~~~~~~  581 (609)
                      +.--+..+|.+++++.++...+.+..+++
T Consensus       395 Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~  423 (433)
T KOG3810|consen  395 QFVVYSSYFIVLGVIFLIGFGIEYLMCRR  423 (433)
T ss_pred             eEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence            11223446888888888887765555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=89.47  E-value=20  Score=37.31  Aligned_cols=90  Identities=14%  Similarity=-0.010  Sum_probs=53.2

Q ss_pred             cccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q 039271          398 AASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIF  477 (609)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  477 (609)
                      ...+......+..+++++.+.+.|+++||.           ....-.++.+++++.-.                 ..+..
T Consensus        71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-----------~cl~~cily~~scl~k~-----------------~~~~~  122 (354)
T PF05631_consen   71 IAILFVAGFASSAIFGTFVGSLADRYGRKK-----------ACLLFCILYSLSCLTKH-----------------SSNYP  122 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchH-----------HHHHHHHHHHHHHHHHh-----------------ccccH
Confidence            344566677788888888888766666552           24444455555554321                 23556


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHhh-----hcCCcchhHHHHH
Q 039271          478 WQIPQYVLVGASEVFMYVGQLEFFN-----GQAPDGIKSFGSS  515 (609)
Q Consensus       478 ~~i~~~~l~g~g~~~~~~~~~~~~~-----~~~p~~~r~~~~g  515 (609)
                      .++..=++.|++..+.+...-++..     ..+|++..+...+
T Consensus       123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~  165 (354)
T PF05631_consen  123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFS  165 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            6677778888887777765545443     2345554444333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=88.14  E-value=5.2  Score=43.41  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccccc
Q 039271          169 AIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGK  238 (609)
Q Consensus       169 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g  238 (609)
                      ..+++.-++..+....+..+..++-+...+|..      -|+.+++.+...|+|+-....+.-++.|.+.
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT  469 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT  469 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence            333444445566667777888999999999998      8899999999999999887777666666543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=85.33  E-value=19  Score=38.54  Aligned_cols=123  Identities=12%  Similarity=0.047  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhh---CCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 039271           65 QGLATLAFFGVGVNLVLFLTRVL---QQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLS  141 (609)
Q Consensus        65 ~~~~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~  141 (609)
                      ..+..-+++-+..+...--. +.   +-+..--|.+-.+.++.++++.+..|++..++ .+-.-+.++.+-...+.+++.
T Consensus       256 Wa~atcgy~qv~nYvQ~LW~-~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w-~~~~~l~l~~~S~l~a~~L~l  333 (412)
T PF01770_consen  256 WAFATCGYYQVINYVQSLWD-TVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNW-DRWGELALGVFSLLQAGLLFL  333 (412)
T ss_pred             HHHHHhHHHHHHHHHHHHHH-hcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHH
Confidence            33444445544444443323 33   22333458888889999999999999997774 776655555544333333332


Q ss_pred             HHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          142 VLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      ..                    ...+.|..+++-++.+..+....+.+..-++.....+.      .+..+|+.
T Consensus       334 m~--------------------~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~------yaLVFGiN  381 (412)
T PF01770_consen  334 MS--------------------FTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEER------YALVFGIN  381 (412)
T ss_pred             HH--------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------eeeeeeeH
Confidence            22                    02678888888888777777777776666666666555      66666653

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=84.02  E-value=71  Score=34.98  Aligned_cols=43  Identities=9%  Similarity=-0.171  Sum_probs=37.7

Q ss_pred             hhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039271          495 VGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMG  537 (609)
Q Consensus       495 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~  537 (609)
                      ...++++.|....+.-.+..++....+++|..+++.+...+..
T Consensus       148 ~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       148 LLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3778899999999999999999999999999999888877654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=81.87  E-value=12  Score=37.37  Aligned_cols=175  Identities=13%  Similarity=-0.016  Sum_probs=98.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhH---HHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYL---TCAVFQLI  132 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~---~~~~~~~~  132 (609)
                      |..++..+...++...|..+.-|.|..--++   ...--|.+.+.+.+...++.-+..++..|-  |.+   .+.+..++
T Consensus       249 ki~LLG~iqsLFE~smytFVFLWTPaLspn~---e~iPhGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~v  323 (454)
T KOG4332|consen  249 KIALLGAIQSLFEGSMYTFVFLWTPALSPND---EEIPHGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLV  323 (454)
T ss_pred             HHHHHHHHHHHHhhhhheeeeeecccCCCCc---ccCCchhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHH
Confidence            3344455566667666554444544321111   122347778888888887777777777663  333   23333333


Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhH
Q 039271          133 FVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFF  212 (609)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  212 (609)
                      .++...+..+.....               +...++..-+++.+++-.+.|..+|.+.-+-.+..|++.      |...+
T Consensus       324 s~a~l~Lpilt~~vs---------------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstim  382 (454)
T KOG4332|consen  324 SIAALLLPILTSSVS---------------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIM  382 (454)
T ss_pred             HHHHHHHHHHHhccC---------------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------Hhhhh
Confidence            222222222221111               111233344677778888899999999999999999888      88888


Q ss_pred             HHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHH
Q 039271          213 CYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLS  256 (609)
Q Consensus       213 ~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  256 (609)
                      .++..-.|+-.-++-...-.-....+-|-.|-++.+....+.+.
T Consensus       383 NfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  383 NFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             hheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            88777777654443211000011235567788877766655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	609
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		5e-06

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 30/173 (17%)
Query: 61  LLANQGLATLAFFGVGVNLVLFLTRVL------QQENANAANNVSKWTGTVYMCSLIGAF 114
           ++A++     +F+G+   L  FL   L      +   A A +    +   VY   L+G +
Sbjct: 17  IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGW 76
Query: 115 LSDSYWGRYLTCAVFQXXXXXXXXXXXXXXXXMIKPTGCGDGFISCKPLSSIFAAIFYLS 174
           ++D ++G+Y T                            G  F++    S      FY  
Sbjct: 77  IADRFFGKYNTILWLSLIYC------------------VGHAFLAIFEHS---VQGFYTG 115
Query: 175 IYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSN 227
           ++LIA G GG +P +++F  DQFD+S     Q     F  FYF +N GS F++
Sbjct: 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFAS 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	609
2xut_A	524	Proton/peptide symporter family protein; transport	1e-144
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  426 bits (1097), Expect = e-144
 Identities = 118/559 (21%), Positives = 209/559 (37%), Gaps = 55/559 (9%)

Query: 49  EKNKGGW-KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQ------ENANAANNVSKW 101
             +   W +    ++A++     +F+G+   L  FL   L          A A +    +
Sbjct: 4   PVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSF 63

Query: 102 TGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCK 161
              VY   L+G +++D ++G+Y T     LI+ VG   L+                    
Sbjct: 64  VIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-------------------- 103

Query: 162 PLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNV 221
            +       FY  ++LIA G GG +P +++F  DQFD+S     Q     F  FYF +N 
Sbjct: 104 -IFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK---AFDMFYFTINF 159

Query: 222 GSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVF 281
           GS F++  +     +    + F +      +A + + +G   Y ++ P          V 
Sbjct: 160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219

Query: 282 IAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLA----- 336
            +A     V    N   +  + G  SA      I     +  L  A  +    +      
Sbjct: 220 RSALLTK-VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASL 278

Query: 337 GPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRL 396
             +   K      V+  + VL++L ++     +  +F Q AS ++ Q + M   +     
Sbjct: 279 QLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQWF 335

Query: 397 PAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGA 456
             A M A +   V++       +L P   ++       + L++MG G+ I  L+ I  G 
Sbjct: 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGT 392

Query: 457 TEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL 516
            ++         +  S+LSIFWQI  Y L+   EV +    LEF   QAP  +K    S 
Sbjct: 393 IQLMM-------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF 445

Query: 517 CMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYL 576
              S++ GN    L  V V    +       +   ++        F  A       +++ 
Sbjct: 446 WTLSVTVGNLWVLLANVSV---KSPTVTEQIVQTGMSVTAFQ--MFFFAGFAILAAIVFA 500

Query: 577 ICANWYKGINLDEDSCEKE 595
           + A  Y+  +    +   E
Sbjct: 501 LYARSYQMQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 82/476 (17%), Positives = 164/476 (34%), Gaps = 71/476 (14%)

Query: 69  TLAFFGVGVNLVLFLTRVLQQ-----ENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRY 123
             +++G+   L+ ++  ++         A AA+ ++ +   VY+   IG F++D   G  
Sbjct: 26  RFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR 85

Query: 124 LTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYG 183
                       G VL+ +   ++  P G               A+  + SI LI  G G
Sbjct: 86  PA-------VFWGGVLIMLGHIVLALPFG---------------ASALFGSIILIIIGTG 123

Query: 184 GHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGF 243
             +P ++T     +DE   + R +    F  F F +N+G+  +  I+   +++  + + F
Sbjct: 124 FLKPNVSTLVGTLYDEHDRR-RDAG---FSIFVFGINLGAFIAPLIVGAAQEAAGYHVAF 179

Query: 244 LVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVA 303
            ++     I LL Y  G              P   +       K ++ V           
Sbjct: 180 SLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG-------FI 232

Query: 304 GPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTV-TQVEEAKCVLKMLPI 362
               AI     ++  N +       TI    +      W + +V     E   V+  +P+
Sbjct: 233 ----AIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPL 288

Query: 363 WLCTIIYSVVFTQMAS---LFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKI 419
           ++  +++  +  Q +     F    + ++S       P +   + +   +++ T  +  +
Sbjct: 289 FIAAVLFWAIEEQGSVVLATFAA--ERVDSSW----FPVSWFQSLNPLFIMLYTPFFAWL 342

Query: 420 LVPVAGKLNGNPKGLSELQRMGIGLII---GMLAMIAAGATEIQRLKYISPGEKASSLSI 476
                      P   S   +  +GL+      L M   G              K    S 
Sbjct: 343 WTAWKKN---QP---SSPTKFAVGLMFAGLSFLLMAIPG-------ALYGTSGKV---SP 386

Query: 477 FWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLV 532
            W +  + LV   E+ +    L      AP    S   S+   S S G+ +++ LV
Sbjct: 387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 57/392 (14%), Positives = 101/392 (25%), Gaps = 133/392 (33%)

Query: 188 TLATFGADQFDE---SKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFL 244
             +    ++ D    SK     +  LF+      L+        +  + E+  +    FL
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQE---EMVQKFVEEVLRINYKFL 94

Query: 245 VSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDE----LY 300
           +S     I             Y++   + L    QVF     K+NV       +    L 
Sbjct: 95  MS----PIKTEQRQPSMMTRMYIE-QRDRLYNDNQVF----AKYNVSRLQPYLKLRQALL 145

Query: 301 EVAGPESAI-----KGSRK-ILHSNEIEFLDKAATITDNDLAGPKNP----WKLCTVTQV 350
           E+  P   +      GS K  +          A  +  +     K      W    +   
Sbjct: 146 ELR-PAKNVLIDGVLGSGKTWV----------ALDVCLSYKVQCKMDFKIFW--LNLKNC 192

Query: 351 EEAKCVLKMLPIWLCTIIYSVVFTQMAS------------------LFVEQG-------- 384
              + VL+ML   L   I    +T  +                   L   +         
Sbjct: 193 NSPETVLEMLQK-LLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 385 -DVMNSHIGEFRLPAASMSAFDI-CSVLICT----------GIYRKILVPV--------- 423
            +V N+            +AF++ C +L+ T                +            
Sbjct: 251 LNVQNAKA---------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 424 ------AGKLNGNPKGLSELQRMGIGLIIGML-AMIAAGATEIQRLKYI----------- 465
                    L+  P+ L           + ++   I  G       K++           
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 466 -----SPGEKAS---SLSIF---WQIPQYVLV 486
                 P E       LS+F     IP  +L 
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 54/334 (16%), Positives = 100/334 (29%), Gaps = 88/334 (26%)

Query: 313 RKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM--------LPIW- 363
           + IL   E  F      + + D    ++  K  ++   EE   ++             W 
Sbjct: 19  KDILSVFEDAF------VDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 364 LCTIIYSVVFTQMASLFVEQGD------VMNSHIGEFRLPAASMSAFDICSVLICTG--I 415
           L +        +M   FVE+        +M+    E R P+     +      +     +
Sbjct: 71  LLS--KQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 416 YRKILVPVAGKLNGNPKGLSELQRMGIGLIIGM-------LAMIAAGATEIQRLKYISPG 468
           + K  V          + L EL+     LI G+       +A+    + ++Q        
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM---DF 182

Query: 469 EKASSLSIFW------QIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMAS-- 520
           +      IFW        P+ VL    ++     Q++       D   +    +      
Sbjct: 183 K------IFWLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 521 ----ISFGNYVSSLLVVMVMGITAKGDKPGWIPDDL-NTGHMDRFYF---LLAVLTAFDF 572
               +    Y + LLV+                 ++ N    + F     +L + T F  
Sbjct: 234 LRRLLKSKPYENCLLVL----------------LNVQNAKAWNAFNLSCKIL-LTTRFKQ 276

Query: 573 VIYLICANWYKGINLDEDSCEKEMEMKLDEDDVL 606
           V   + A     I+LD         M L  D+V 
Sbjct: 277 VTDFLSAATTTHISLD------HHSMTLTPDEVK 304

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 57/407 (14%), Positives = 115/407 (28%), Gaps = 124/407 (30%)

Query: 2   DSVLNSTNQITLKVTDENISTGQAQAAN-KNNKDEKKLTSFIRKNLIHEKNKGGWKYASI 60
           ++VL    ++  ++ D N ++    ++N K      +      + L+  K      Y + 
Sbjct: 196 ETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSK-----PYENC 246

Query: 61  L--LAN-QGLATLAFFGVGVNLVLFLTR---VLQQENANAANNVS--------------- 99
           L  L N Q       F +    +L  TR   V    +A    ++S               
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 100 ---KWTGTVY-------------MCSLIGAFLSD-----SYW------------------ 120
              K+                    S+I   + D       W                  
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 121 -------GRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIF--AAIF 171
                    +   +VF     +  +LLS++ +  +  +            S +       
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 172 YLSIYLIAFGYGGHQPTLATF------------GADQFDESKPKERQSKTLFFCYFYFFL 219
            +SI  I                            D  D   P   Q       YFY  +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-------YFYSHI 477

Query: 220 -----NVG-----SLFSNTIL--------VYYEDSGKWTLGFLVSLASAVIALLSYLM-G 260
                N+      +LF    L        + ++ +     G +++    +     Y+   
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 261 TPGY-RYVKPCGNPLPRVAQVFIAAARKWNVV---VPANSDELYEVA 303
            P Y R V    + LP++ +  I  ++  +++   + A  + ++E A
Sbjct: 538 DPKYERLVNAILDFLPKIEENLI-CSKYTDLLRIALMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	609
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.47
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.38
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.32
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.24
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.18
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.94
2xut_A	524	Proton/peptide symporter family protein; transport	98.23

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=5.1e-30  Score=279.62  Aligned_cols=444  Identities=16%  Similarity=0.238  Sum_probs=295.0

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hCCchhhhhHHHHHHHHHHHHHHhHHHHHhhh-ccchhHH
Q 039271           52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRV-----LQQENANAANNVSKWTGTVYMCSLIGAFLSDS-YWGRYLT  125 (609)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~  125 (609)
                      ++++|.++.+++..++.++++|++.++++.|++++     +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            34567888899999999999999999999999988     99999999999999999999999999999999 6 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhh
Q 039271          126 CAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKER  205 (609)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (609)
                      +..+.++..++.++++++                      ++.+.++++|++.|++.+...+...++++|++|+++++  
T Consensus        88 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--  143 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALP----------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR--  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSC----------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH--
T ss_pred             HHHHHHHHHHHHHHHHHh----------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc--
Confidence            999999998888877765                      56788999999999999999999999999999987733  


Q ss_pred             hccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceec---CCCCC-ChhHHHHHH
Q 039271          206 QSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYV---KPCGN-PLPRVAQVF  281 (609)
Q Consensus       206 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~  281 (609)
                        |+.++++++...++|..++|.+++++.+..||++.|++.++..+++++.++...++...+   ++... ...+..+..
T Consensus       144 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (491)
T 4aps_A          144 --RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL  221 (491)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred             --ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence              677888899999999999999999999989999999998877776666554333322111   11111 111111100


Q ss_pred             HH-------------H-HhhcccccCCCchhhhhhcCCcccccCccccccCchhh-HHhhhhcccccCCCCCCCCCcccc
Q 039271          282 IA-------------A-ARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIE-FLDKAATITDNDLAGPKNPWKLCT  346 (609)
Q Consensus       282 ~~-------------~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  346 (609)
                      ..             . ....+..                       +++..... ...........     ...|+...
T Consensus       222 ~~~g~~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  273 (491)
T 4aps_A          222 VKVSLAVAGFIAIIVVMNLVGWNS-----------------------LPAYINLLTIVAIAIPVFYF-----AWMISSVK  273 (491)
T ss_dssp             HHCCCCCHHHHHHHHHHHHHSSCC-----------------------TTHHHHHHHHHHHHHHHHHH-----HHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcc-----------------------cccchhhhhHHHHHHHHHHH-----HHHhhccc
Confidence            00             0 0000000                       00000000 00000000000     00000000


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEeccc-ccccccccccCcccccchhHHHHHHHHHhhhhhhhhccc
Q 039271          347 VTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDV-MNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAG  425 (609)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (609)
                       ....+.++......+++....++..+.+..+.+...... .+..    ....+.......+..++..++.+++.++++|
T Consensus       274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~  348 (491)
T 4aps_A          274 -VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKK  348 (491)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhc
Confidence             001122333334445555555666665555443222111 1111    1345667777788888888888887665555


Q ss_pred             cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcC
Q 039271          426 KLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQA  505 (609)
Q Consensus       426 r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~  505 (609)
                      |.      ......+..+.++.+++++.+.......    ..   ....+.+++++.+++.+++.+...+..++++.+.+
T Consensus       349 r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  415 (491)
T 4aps_A          349 NQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY----GT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA  415 (491)
T ss_dssp             C---------CHHHHHHHHHHHHHHHTTTHHHHHHC----CC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred             cC------CCchHHHHHHHHHHHHHHHHHHHHHHhc----CC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence            42      1245567788888888877776643210    00   12346677788888999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccccc
Q 039271          506 PDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGI  585 (609)
Q Consensus       506 p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~  585 (609)
                      |++.|++++|+.++...+|+.+++.+.+++.+.                 ++...|+++++++++..++.+++.++.+++
T Consensus       416 p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          416 PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988765421                 123467777888888877777776665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=3.3e-30  Score=283.67  Aligned_cols=481  Identities=24%  Similarity=0.326  Sum_probs=284.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC------CchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQ------QENANAANNVSKWTGTVYMCSLIGAFLSDSYW-GRYLTC  126 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~  126 (609)
                      ++|.++.+++..++.++++|++.++++.|+++++|      .+..+++++.+.+.++..++.+++|+++|| + |||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~   88 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTI   88 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHH
Confidence            45567778888999999999999999999999999      999999999999999999999999999999 6 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcch-hHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhh
Q 039271          127 AVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSI-FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKER  205 (609)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (609)
                      ..+.++..++.+++.++                      . +.+.++++|++.|++.+...+...++++|.+|+++    
T Consensus        89 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----  142 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIF----------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN----  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHHT----------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred             HHHHHHHHHHHHHHHHh----------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence            99999998888887776                      4 68889999999999999999999999999999887    


Q ss_pred             hccchh---HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHH
Q 039271          206 QSKTLF---FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFI  282 (609)
Q Consensus       206 ~~r~~~---~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (609)
                        |++.   +++++...++|..++|.+++++.+..||++.|++.++..+++.+.++..+++.++++|++++..+..+...
T Consensus       143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (524)
T 2xut_A          143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR  220 (524)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence              6544   45588999999999999999999889999999998887777666655544443333332222111111111


Q ss_pred             HHHhhcccccCCCchhhhhhcCCcccccCccccccC---chhhHHhhhhcccccCCCCCCCCC-------cccchhhHHH
Q 039271          283 AAARKWNVVVPANSDELYEVAGPESAIKGSRKILHS---NEIEFLDKAATITDNDLAGPKNPW-------KLCTVTQVEE  352 (609)
Q Consensus       283 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  352 (609)
                      ..++++.... +....+...................   ..........  .+.+   ...+|       +.+..+...+
T Consensus       221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~  294 (524)
T 2xut_A          221 SALLTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLV--MGFV---GAGASLQLERARKSHPDAAVDG  294 (524)
T ss_dssp             ------CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHH--HHHH---HTGGGTHHHHSCCSCCSSSSTT
T ss_pred             HHHhhhhccc-Cccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhh--hccc---ccchhhHHhhhhccccHhHHHH
Confidence            1111110000 0000000000000000000000000   0000000000  0000   00011       0000001122


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCC
Q 039271          353 AKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPK  432 (609)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  432 (609)
                      .++.+....++.....++..+.+..+.+..+....+...  + ...+.+..++.+..++..++.+++..+..+|.+++  
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  369 (524)
T 2xut_A          295 VRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK--  369 (524)
T ss_dssp             TTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC--
Confidence            233333334444444445555554444433322222110  0 24455666777777888888887654444554332  


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHH
Q 039271          433 GLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSF  512 (609)
Q Consensus       433 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~  512 (609)
                       .+....+.+|+++.+++++.+.......    +.   ....+.+++++.+++.+++++...+..++++.+.+|++.||+
T Consensus       370 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~  441 (524)
T 2xut_A          370 -LTALRKMGAGIAITGLSWIVVGTIQLMM----DG---GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT  441 (524)
T ss_dssp             --CCHHHHHTHHHHHHHHHHTTTTTTTTT----TT---TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHh----cC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence             2245567788888888877765532110    00   113456677788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC-CCccchhhHHHHHHHHHHHHHHHHHhhhccccccccCC
Q 039271          513 GSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPD-DLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLD  588 (609)
Q Consensus       513 ~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~  588 (609)
                      ++|++++...+|+.+++.+.+.+.+.+.    .+|..+ +.+  .....|++++++++++.++++++.+++++++.+
T Consensus       442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (524)
T 2xut_A          442 IMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQDHY  512 (524)
T ss_dssp             THHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            9999999999999999999987753210    012110 000  011237778888888888777777766655433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=1.1e-27  Score=260.94  Aligned_cols=414  Identities=13%  Similarity=0.063  Sum_probs=235.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCCCCCccCCCcchhHH
Q 039271           91 NANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIK-PTGCGDGFISCKPLSSIFAA  169 (609)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  169 (609)
                      ....+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++++....... ....     .-......+.+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-----~~~~~~a~~~~  127 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-----TVPVYLAGYVP  127 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-----SCCGGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-----HHHHHHhhhHH
Confidence            45678899999999999999999999996 99999999999999999888754100000 0000     00000126789


Q ss_pred             HHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc--------cchhH
Q 039271          170 IFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS--------GKWTL  241 (609)
Q Consensus       170 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~--------~g~~~  241 (609)
                      .++++|+++|+|.|+..+...++++|..|+++      |++..++++.+..+|..+++.++..+...        .+|++
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence            99999999999999999999999999999988      99999999999999999988877655432        34666


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchh
Q 039271          242 GFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEI  321 (609)
Q Consensus       242 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  321 (609)
                      .+.+..+..++.++..+.                                .||+|+++..+.+.|++.+..++....+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          202 MFASECIPALLFLMLLYT--------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             HHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence            665554443333332221                                566666666666555554443332211110


Q ss_pred             hH--Hhhhh-cccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHH-HHHHHHHHhcccceeeEecccccccccccccC
Q 039271          322 EF--LDKAA-TITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLC-TIIYSVVFTQMASLFVEQGDVMNSHIGEFRLP  397 (609)
Q Consensus       322 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (609)
                      ..  .+... ....++     ...+    ......++.........+ ..........+.+.+... ....      ...
T Consensus       250 ~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~  313 (491)
T 4gc0_A          250 TQAVQEIKHSLDHGRK-----TGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGAS------TDI  313 (491)
T ss_dssp             HHHHHHHHHHHHHHHH-----HTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCC------HHH
T ss_pred             HHHHHHHHHHHHhhhh-----hhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCC------ccc
Confidence            00  00000 000000     0000    000000011111111110 000000111111111110 0000      111


Q ss_pred             cccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q 039271          398 AASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIF  477 (609)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  477 (609)
                      ......+..+..++...+...+.|+.+||           ..+..+...++++++.++.....            ..+.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~  370 (491)
T 4gc0_A          314 ALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT------------QAPGI  370 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT------------TCCHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc------------ccchH
Confidence            11222233333344444444444444444           23556666666666665544321            11222


Q ss_pred             HHHHHHHHHHHHH-HhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccch
Q 039271          478 WQIPQYVLVGASE-VFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGH  556 (609)
Q Consensus       478 ~~i~~~~l~g~g~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~  556 (609)
                      ..+...++...+. ....|..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.+..       |.   ....+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~---~~~~~  440 (491)
T 4gc0_A          371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WL---VAHFH  440 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HH---HHHHT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---Hhhhh
Confidence            2222222322222 2334666788999999999999999999999999999888877654311       00   00011


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhccccccccCCchhhHHHhh
Q 039271          557 MDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEME  597 (609)
Q Consensus       557 ~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~  597 (609)
                      ....|++++++++++.++.+++.||+|++++||.++..+++
T Consensus       441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~  481 (491)
T 4gc0_A          441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE  481 (491)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred             hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence            22357888999999999999999999999999988776543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=1.2e-26  Score=249.39  Aligned_cols=398  Identities=8%  Similarity=-0.019  Sum_probs=256.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      |+.++.+++..+...+..+.+.+.++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            5566777777777777777776777655 4567 9999999999999999999999999999996 99999999999999


Q ss_pred             HHHHHHHH----HhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccch
Q 039271          135 VGLVLLSV----LSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTL  210 (609)
Q Consensus       135 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  210 (609)
                      ++.+++++    .                      .+++.++++|++.|++.+...+...++++|++|+++      |++
T Consensus       104 ~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~  155 (451)
T 1pw4_A          104 AVMLFMGFVPWAT----------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGG  155 (451)
T ss_dssp             HHHHHHHHCHHHH----------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHH
T ss_pred             HHHHHHHhhhhcc----------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhH
Confidence            99988887    5                      567789999999999999999999999999999887      999


Q ss_pred             hHHHHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcc
Q 039271          211 FFCYFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWN  289 (609)
Q Consensus       211 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      .+++.+.+.++|..++|.+++++.+..| |++.|++.++..++..++.+...++.+++....+. .              
T Consensus       156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------  220 (451)
T 1pw4_A          156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E--------------  220 (451)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h--------------
Confidence            9999999999999999999999888888 99999998877666555443333322111100000 0              


Q ss_pred             cccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhH-HHHHHHHHH
Q 039271          290 VVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM-LPIWLCTII  368 (609)
Q Consensus       290 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  368 (609)
                          +.       .+.++.+... .  ..+                   ..+++..........+.++.. +..++....
T Consensus       221 ----~~-------~~~~~~~~~~-~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (451)
T 1pw4_A          221 ----EY-------KNDYPDDYNE-K--AEQ-------------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  267 (451)
T ss_dssp             ----TT-------CCC-----------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ----hh-------cccccccchh-h--hhc-------------------ccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence                00       0000000000 0  000                   000000000000001111111 111122222


Q ss_pred             HHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhc--cccccCCCCCCChhHHHHHHHHH
Q 039271          369 YSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPV--AGKLNGNPKGLSELQRMGIGLII  446 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~  446 (609)
                      ++......+.++.. ..+.+      ....+.+.....+..++...+.+++.+++  .+|           ..+.++..+
T Consensus       268 ~~~~~~~~~~~~~~-~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~  329 (451)
T 1pw4_A          268 RYGILDWSPTYLKE-VKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMT  329 (451)
T ss_dssp             HHHHHHHHHHHBTT-BSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHH
Confidence            22222222222211 11111      11233445555556666666666654443  222           234444444


Q ss_pred             HH-HHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHH-H
Q 039271          447 GM-LAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISF-G  524 (609)
Q Consensus       447 ~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~l-g  524 (609)
                      .. ++++.+...              ...+.+..+...++.|++.....+..+.++.+.+|++.|+++.|+.++...+ |
T Consensus       330 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g  395 (451)
T 1pw4_A          330 LVTIATIVYWMN--------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG  395 (451)
T ss_dssp             HHHHHHHHTTSC--------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence            44 555544331              1224555666667788877777888889999999999999999999999999 9


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhc
Q 039271          525 NYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICA  579 (609)
Q Consensus       525 ~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~  579 (609)
                      +.+++.+.+.+.+..                ++...|++.+++.+++.++.++..
T Consensus       396 ~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          396 SVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876522                234467777777777776665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=1.9e-24  Score=231.42  Aligned_cols=355  Identities=12%  Similarity=0.053  Sum_probs=233.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      +++.+..+++..+...+......+.++ ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~  101 (438)
T 3o7q_A           24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence            455666666666677776665555555 46778999999999999999999999999999999995 9999999999999


Q ss_pred             HHHHHHH---HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccch
Q 039271          134 VVGLVLL---SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTL  210 (609)
Q Consensus       134 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  210 (609)
                      .++.+++   ...                      .+++.++++|++.|++.+...+...++++|++|+++      |++
T Consensus       102 ~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  153 (438)
T 3o7q_A          102 ALGAALFWPAAEI----------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF  153 (438)
T ss_dssp             HHHHHHHHHHHHT----------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred             HHHHHHHHhcccc----------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence            9988887   443                      568899999999999999999999999999999998      999


Q ss_pred             hHHHHHHHHhhhHHHHhhhhhhcc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhcC-Cc
Q 039271          211 FFCYFYFFLNVGSLFSNTILVYYE-DSGK-------------------------WTLGFLVSLASAVIALLSYLMGT-PG  263 (609)
Q Consensus       211 ~~~~~~~~~~ig~~~~~~i~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~  263 (609)
                      .+++++.+.++|..++|.+++++. +..+                         |++.|++.++..++..++++..+ |+
T Consensus       154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~  233 (438)
T 3o7q_A          154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA  233 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999988 5554                         99999877666555544443321 11


Q ss_pred             ceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCc
Q 039271          264 YRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWK  343 (609)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (609)
                      .+++++++++.                                          .....++.+..                
T Consensus       234 ~~~~~~~~~~~------------------------------------------~~~~~~~~~~~----------------  255 (438)
T 3o7q_A          234 LQSDNHSDAKQ------------------------------------------GSFSASLSRLA----------------  255 (438)
T ss_dssp             CTTTCCCCSST------------------------------------------TSHHHHHHHHT----------------
T ss_pred             ccccccccccc------------------------------------------cchhhhHHHHH----------------
Confidence            10000000000                                          00000000000                


Q ss_pred             ccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhc
Q 039271          344 LCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPV  423 (609)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (609)
                             ++.+.....+..++..........+.+.++..+..+.+      ....+.......+..++...+.+++.+++
T Consensus       256 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  322 (438)
T 3o7q_A          256 -------RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF  322 (438)
T ss_dssp             -------TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -------hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   00011111111111122122222222222011111111      11233444445555555666666654444


Q ss_pred             cccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 039271          424 AGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNG  503 (609)
Q Consensus       424 ~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~  503 (609)
                      .+|           ..+..+.++.+++++.+.+..                +. +.+...++.+++.....|..+++..+
T Consensus       323 ~~~-----------~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~  374 (438)
T 3o7q_A          323 APH-----------KVLAAYALIAMALCLISAFAG----------------GH-VGLIALTLCSAFMSIQYPTIFSLGIK  374 (438)
T ss_dssp             CHH-----------HHHHHHHHHHHHHHHHHHHCC----------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             cch-----------HHHHHHHHHHHHHHHHHHHcC----------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333           346666666776666655421                22 33444567788888888999999899


Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039271          504 QAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGIT  539 (609)
Q Consensus       504 ~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~  539 (609)
                      ..|++ ++.+.++.. .+.+|+.+++.+.+.+.+..
T Consensus       375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            99977 899999887 66799999999999887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=1.2e-22  Score=213.37  Aligned_cols=344  Identities=12%  Similarity=0.033  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271           59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV  138 (609)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~  138 (609)
                      +.+++..++..+......+.++.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            345556666666666666666654 668999999999999999999999999999999996 999999999999999998


Q ss_pred             HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271          139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF  218 (609)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  218 (609)
                      ++.+.                      ++.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++++..
T Consensus        81 ~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  132 (375)
T 2gfp_A           81 VAVTT----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMG  132 (375)
T ss_dssp             HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHH
T ss_pred             HHHHh----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence            88887                      678899999999999999999999999999999888      99999999999


Q ss_pred             HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchh
Q 039271          219 LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDE  298 (609)
Q Consensus       219 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  298 (609)
                      .++|..++|.+++++.+..||++.|++.++..++..+......|+   +++.+++.                        
T Consensus       133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------------------  185 (375)
T 2gfp_A          133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE---TRPVDAPR------------------------  185 (375)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC---CSTTTCCC------------------------
T ss_pred             HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc---cCCCCccc------------------------
Confidence            999999999999999998899999998776655544322222111   11100000                        


Q ss_pred             hhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHH-HHHHHHHHHHHhccc
Q 039271          299 LYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPI-WLCTIIYSVVFTQMA  377 (609)
Q Consensus       299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  377 (609)
                             ++                              ...+++     +....+.+...... +.....+.......+
T Consensus       186 -------~~------------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (375)
T 2gfp_A          186 -------TR------------------------------LLTSYK-----TLFGNSGFNCYLLMLIGGLAGIAAFEACSG  223 (375)
T ss_dssp             -------CC------------------------------TTTCST-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             -------cc------------------------------HHHHHH-----HHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00                              000111     11111222222111 111222222222222


Q ss_pred             ceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHH-HHHHHH--HH
Q 039271          378 SLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLII-GMLAMI--AA  454 (609)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~--~~  454 (609)
                      .++ .+..+.+      ....+.+.....+..++...+.+++    .+|.+       +  +...+..+ ...+..  ..
T Consensus       224 ~~~-~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~-------~--~~~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          224 VLM-GAVLGLS------SMTVSILFILPIPAAFFGAWFAGRP----NKRFS-------T--LMWQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             CSS-HHHHHHH------HHHHHHHHHTHHHHHHHHHHHHHTT----TTHHH-------H--HHHHHHHHHHHTSSSSSHH
T ss_pred             HHH-HHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------H--HHHHHHHHHHHHHHHHHHH
Confidence            221 1111111      1122334444455555555555443    44421       1  23344433 222222  22


Q ss_pred             HHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039271          455 GATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVM  534 (609)
Q Consensus       455 ~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~  534 (609)
                      ....              ..+.+..+...++.+++.+...+....++.+..| +.|+++.|+.+..+.+|..+++.+.+.
T Consensus       284 ~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          284 DWFG--------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             HHHH--------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             hhhc--------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211              1134455566778889999999999999999998 889999999999999999888887776


Q ss_pred             hh
Q 039271          535 VM  536 (609)
Q Consensus       535 i~  536 (609)
                      +.
T Consensus       349 l~  350 (375)
T 2gfp_A          349 LP  350 (375)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=2.6e-22  Score=214.61  Aligned_cols=397  Identities=11%  Similarity=-0.020  Sum_probs=219.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |..+.+....++...++..+.++++.|+++++|.+..+++++.+.+.++..++++++|+++||+ ||||+++.+.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4556666666666666666778999999988999999999999999999999999999999995 999999988876654


Q ss_pred             HHHHHHHHh-hhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          136 GLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       136 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +...+.... .+.                   ....++.++++.+++.+...+...+...+..++..+    .++..++.
T Consensus        86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~  142 (417)
T 2cfq_A           86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR  142 (417)
T ss_dssp             CHHHHHHHTHHHH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred             HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence            322111110 000                   000122334443433333333333333333322111    15666777


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA  294 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  294 (609)
                      .+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++    +++..+                  .++
T Consensus       143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~  199 (417)
T 2cfq_A          143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VAN  199 (417)
T ss_dssp             HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------ccc
Confidence            777789999999999998876 689999987765543333222221111    100000                  000


Q ss_pred             CchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 039271          295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFT  374 (609)
Q Consensus       295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                      .         .++ .+     +.....++.+.                       .++ +...............+..+.
T Consensus       200 ~---------~~~-~~-----~~~~~~~~~~~-----------------------~~~-~~~~~~~~~~~~~~~~~~~~~  240 (417)
T 2cfq_A          200 A---------VGA-NH-----SAFSLKLALEL-----------------------FRQ-PKLWFLSLYVIGVSCTYDVFD  240 (417)
T ss_dssp             S---------SSS-CC-----CCCCHHHHHHH-----------------------TTC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             c---------ccc-cc-----ccccHHHHHHH-----------------------hcC-CchhhHHHHHHHHHHHHHHHH
Confidence            0         000 00     00000000000                       000 111111111111111112221


Q ss_pred             -cccceeeEeccccccccccc-ccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHH
Q 039271          375 -QMASLFVEQGDVMNSHIGEF-RLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMI  452 (609)
Q Consensus       375 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~  452 (609)
                       ..+.++...   ....  +. ....+....++.+..++...+.+++.|++++|           ..+..+.++.+++++
T Consensus       241 ~~~~~~~~~~---~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~  304 (417)
T 2cfq_A          241 QQFANFFTSF---FATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRII  304 (417)
T ss_dssp             HHHHHHHHHT---SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHH
Confidence             112222110   0000  00 00112333444444455555556654444433           245566666666655


Q ss_pred             HHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH-HHHHHHHHHHHHHH
Q 039271          453 AAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC-MASISFGNYVSSLL  531 (609)
Q Consensus       453 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~lg~~ig~~~  531 (609)
                      .+..                ..+.+.++...++.+++.....+....++.|.+|++.|+++.++. ++.+.+|+.+++.+
T Consensus       305 ~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l  368 (417)
T 2cfq_A          305 GSSF----------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             HHTT----------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred             HHHH----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence            5533                123444455555666666666677788999999999999999994 78889999999999


Q ss_pred             HHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccccccc
Q 039271          532 VVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGIN  586 (609)
Q Consensus       532 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  586 (609)
                      .+.+.+.                .++...|.+.+++.+++.++.++..++.++.+
T Consensus       369 ~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          369 AGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHTHHHH----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            9876542                12445677788888888777766666554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.47  E-value=2.3e-13  Score=145.62  Aligned_cols=178  Identities=15%  Similarity=0.142  Sum_probs=149.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc--chhHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYW--GRYLTCAVFQLI  132 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~~~~~~~~  132 (609)
                      .+.++.+++..++....++++..+++.|+++.+|.+..+++++.+...++..++.++.|+++|| +  |||+.+..+.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            3567778888888888889999999999998899999999999999999999999999999999 7  899988877665


Q ss_pred             HH-HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          133 FV-VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      .. ++.+++.+.  +                  ..+.+.+.+..++.|++.+...+...+++.|.+|+++      |+++
T Consensus       330 ~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  383 (451)
T 1pw4_A          330 LVTIATIVYWMN--P------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  383 (451)
T ss_dssp             HHHHHHHHTTSC--C------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred             HHHHHHHHHHHh--c------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence            55 333332221  1                  1246667777788899888888888999999999988      9999


Q ss_pred             HHHHHHHHhh-hHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          212 FCYFYFFLNV-GSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       212 ~~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      +++++...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+.
T Consensus       384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 99999999999999999999999988877777665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.38  E-value=5.3e-12  Score=134.49  Aligned_cols=169  Identities=11%  Similarity=0.073  Sum_probs=134.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLF-LTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      +.++..++..++....++.+..+++.| +++.+|.+..++++..+...++..++.+++|+++||+ |||+++..+.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            456666777777777788888999999 8888899999999999999999999999999999995 99999999988877


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      ++.+++...                      .+.+. ....++.+++.+...|...++..|.+|++       ++.+.++
T Consensus       337 ~~~~~~~~~----------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  386 (438)
T 3o7q_A          337 ALCLISAFA----------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF  386 (438)
T ss_dssp             HHHHHHHHC----------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred             HHHHHHHHc----------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence            776665554                      23333 33447788899999999999999988843       3444555


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLS  256 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~  256 (609)
                      .. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus       387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            44 567999999999999999888 999998876655544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.32  E-value=5.7e-12  Score=134.14  Aligned_cols=174  Identities=12%  Similarity=-0.007  Sum_probs=127.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCC---chhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQ---ENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF  133 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~  133 (609)
                      ..+..++..++....++....+++.|+.+.++.   +....++..++..++..++.++.|+++||+ |||+++..+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~  299 (417)
T 2cfq_A          221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence            344444444444445555556788888766553   244557777777788889999999999995 9999998887776


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271          134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC  213 (609)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  213 (609)
                      .++.+++.+.                      .+.+.+.+..++.+++.+...+....+++|.+|++.      |+++++
T Consensus       300 ~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  351 (417)
T 2cfq_A          300 SVRIIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYL  351 (417)
T ss_dssp             HHHHHHHTTC----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHH
T ss_pred             HHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHH
Confidence            6654444332                      234556666666777766667777889999999877      888888


Q ss_pred             H-HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271          214 Y-FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM  259 (609)
Q Consensus       214 ~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  259 (609)
                      + ++...++|+.++|.++|++.+..|++..|.+.+++.+++.+..+.
T Consensus       352 ~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            8 577888999999999999998888989998888777777665544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.24  E-value=4.5e-11  Score=129.49  Aligned_cols=186  Identities=11%  Similarity=0.004  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHH
Q 039271           57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCA-----VFQL  131 (609)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~  131 (609)
                      ..+.+++...+....+.....+++.|+.+.++.+..+.+++.+...+...++.++.|+++||+ |||+...     .+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            345555556666667777778889999988888878888888999999999999999999995 9987654     5555


Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271          132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF  211 (609)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  211 (609)
                      +..++.+++........             +....+.+.+.+..++.|++.+...+...+++.|.+|++.      |+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~  423 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQM  423 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSS
T ss_pred             HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence            55555555444311100             0001245667777888899999999999999999999999      9999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271          212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPG  263 (609)
Q Consensus       212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  263 (609)
                      .++++...++|..++|.+.+++.+ .++.+.|++.++..+++.++.+...++
T Consensus       424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998876 466677777776666665555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.18  E-value=3.5e-10  Score=122.34  Aligned_cols=182  Identities=12%  Similarity=0.044  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271           58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL  137 (609)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~  137 (609)
                      ....+...++..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence            33334434443333333334444556667888888888888888899999999999999995 99999999988887777


Q ss_pred             HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271          138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF  217 (609)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  217 (609)
                      +.+........                ........+..+..++ .....|..+.+.+|.||++.      |+++.++.+.
T Consensus       357 ~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~  413 (491)
T 4gc0_A          357 FSLGTAFYTQA----------------PGIVALLSMLFYVAAF-AMSWGPVCWVLLSEIFPNAI------RGKALAIAVA  413 (491)
T ss_dssp             HHHHHHHHTTC----------------CHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHSSCTTT------HHHHHHHHHH
T ss_pred             HHHHHHHhccc----------------chHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCCHhH------HHHHHHHHHH
Confidence            66655422210                0112222222222222 23345777899999999999      9999999999


Q ss_pred             HHhhhHHHHhhhhhhcccc------cchhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271          218 FLNVGSLFSNTILVYYEDS------GKWTLGFLVSLASAVIALLSYLMGTPG  263 (609)
Q Consensus       218 ~~~ig~~~~~~i~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~  263 (609)
                      ..++|+.+++.+.+.+.+.      .++.+.|++.+++.+++.++.++..|+
T Consensus       414 ~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            9999999988887766542      345567777777777666655554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.94  E-value=1.8e-10  Score=120.06  Aligned_cols=165  Identities=12%  Similarity=0.034  Sum_probs=126.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI-FV  134 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~  134 (609)
                      |.++..++..++....++.+..+++.|+++.+|.+..+++++.+...++..++.++.|+++||+ ||+  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4566667777777888888889999999988999999999999999999999999999999995 872  2233222 22


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      .+..+......+                  ..+.+.+++..++.+++.+...+...+++.|.+| ++      |++..++
T Consensus       276 ~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~  330 (375)
T 2gfp_A          276 AGLLMWIPDWFG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGAL  330 (375)
T ss_dssp             TSSSSSHHHHHH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHH
T ss_pred             HHHHHHHHhhhc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHH
Confidence            222211111000                  1346667777888899999999999999999987 55      8999999


Q ss_pred             HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHH
Q 039271          215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLA  248 (609)
Q Consensus       215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~  248 (609)
                      ++...++|..++|.+.+.+.+..+|+..+++.++
T Consensus       331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            9999999999999999999887778777766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.23  E-value=7.3e-07  Score=97.09  Aligned_cols=150  Identities=13%  Similarity=0.089  Sum_probs=93.9

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHh----hhccchh----HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCc
Q 039271           93 NAANNVSKWTGTVYMCSLIGAFLS----DSYWGRY----LTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLS  164 (609)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (609)
                      ..+++.....++..++.++.+++.    ||. |+|    +.+..+.++..++.+++.+.  +...           +...
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~-----------~~~~  401 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTI--QLMM-----------DGGS  401 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTT--TTTT-----------TTTC
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHH--HHHh-----------cCCC
Confidence            355555555666667777777764    553 432    45555655555554443332  0000           0000


Q ss_pred             chhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccccc--ch---
Q 039271          165 SIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSG--KW---  239 (609)
Q Consensus       165 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~--g~---  239 (609)
                      ..+.+.+.+..++.|++.+...+...+++.|.+|++.      |++++++++...++|+.++|.+.+.+.+..  +|   
T Consensus       402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~  475 (524)
T 2xut_A          402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQ  475 (524)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            1245666777888999999999999999999999998      999999999999999999999999988743  23   


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHhcCC
Q 039271          240 ------TLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       240 ------~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                            +..|++.+++.+++.++++...+
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (524)
T 2xut_A          476 TGMSVTAFQMFFFAGFAILAAIVFALYAR  504 (524)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                  33366666655555554444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	609
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.42
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.29

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4e-26  Score=241.68  Aligned_cols=160  Identities=9%  Similarity=0.083  Sum_probs=134.4

Q ss_pred             HHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 039271           77 VNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDG  156 (609)
Q Consensus        77 ~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (609)
                      +.+.+++. ++|+|..+.|++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++++.....         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            44555776 5899999999999999999999999999999996 999999999999888888777652111         


Q ss_pred             CCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc
Q 039271          157 FISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS  236 (609)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~  236 (609)
                               .+.+.+++.|++.|++.+...+...++++|++|+++      |++.+++++.+.++|..++|.+++.+...
T Consensus       114 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_         114 ---------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             ---------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             ---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhh
Confidence                     346788999999999999999999999999999988      99999999999999999999988876654


Q ss_pred             -cchhHHHHHHHHHHHHHHHHHHhcCC
Q 039271          237 -GKWTLGFLVSLASAVIALLSYLMGTP  262 (609)
Q Consensus       237 -~g~~~~f~~~~~~~~~~~~~~~~~~~  262 (609)
                       .+|++.|++.++..++..++.+...+
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcc
Confidence             47999998887766655554444333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=6.8e-23  Score=212.21  Aligned_cols=400  Identities=10%  Similarity=-0.030  Sum_probs=231.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271           56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV  135 (609)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~  135 (609)
                      |+.|.+.+..++..+++....++++.|+++++|.|..++|++.+++.++..++.++.|+++||+ ||||+++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4677788888888888888889999999999999999999999999999999999999999996 999999999888887


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH
Q 039271          136 GLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF  215 (609)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  215 (609)
                      +..+..+.....                  ......++.+.+.+.+.+...........+..+++.+    .+....+..
T Consensus        86 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  143 (417)
T d1pv7a_          86 MFAPFFIFIFGP------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRA  143 (417)
T ss_dssp             THHHHHHHTHHH------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH----HHSCCHHHH
T ss_pred             HHHHHHHhhhhh------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchhh----hhHHHHHHH
Confidence            777766651100                  1112223333333333333333333333332222111    144556677


Q ss_pred             HHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCC
Q 039271          216 YFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPAN  295 (609)
Q Consensus       216 ~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  295 (609)
                      ......+..++|.+++.+.+ .+|+..+........+..+..+...++.+..++..++..                    
T Consensus       144 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  202 (417)
T d1pv7a_         144 RMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG--------------------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH--------------------
T ss_pred             hhhhcccccccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh--------------------
Confidence            77888889999999988876 445555555444444444333333332211111110000                    


Q ss_pred             chhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 039271          296 SDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQ  375 (609)
Q Consensus       296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (609)
                             ++.          .........+..                    ............................
T Consensus       203 -------~~~----------~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (417)
T d1pv7a_         203 -------ANH----------SAFSLKLALELF--------------------RQPKLWFLSLYVIGVSCTYDVFDQQFAN  245 (417)
T ss_dssp             -------SCC----------CCCCHHHHHHHT--------------------TSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------hhc----------cccccccccccc--------------------ccccccchhhhhHHHHHHHHhhhccccc
Confidence                   000          000000000000                    0000011111111111111111111111


Q ss_pred             ccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 039271          376 MASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAG  455 (609)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  455 (609)
                      ........ ...+      ............+...+...+.+++    .+|.+       +...+.++.++.+++++.+.
T Consensus       246 ~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~~-------~~~~~~~~~~~~~~~~~~~~  307 (417)
T d1pv7a_         246 FFTSFFAT-GEQG------TRVFGYVTTMGELLNASIMFFAPLI----INRIG-------GKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HHTTSSSC-HHHH------HHHHHHHHHHHHHHHHHHHTTHHHH----HHHHC-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc-cccc------hhhhcccccccccccccchhhhhhh----hcccc-------cccchhhhHHHHHHhhhccc
Confidence            11110000 0000      1111222333334444444444444    44432       33456777777777777765


Q ss_pred             HHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 039271          456 ATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCM-ASISFGNYVSSLLVVM  534 (609)
Q Consensus       456 ~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~lg~~ig~~~~~~  534 (609)
                      .                ..+.+..+...++.+++.+...+...+++.+.+|++.|+++.++.+ ....+|..+++.+.+.
T Consensus       308 ~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~  371 (417)
T d1pv7a_         308 F----------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN  371 (417)
T ss_dssp             T----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             c----------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5                3356667777788899999999999999999999999999999864 5678999999999998


Q ss_pred             hhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccccccc
Q 039271          535 VMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGIN  586 (609)
Q Consensus       535 i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~  586 (609)
                      +.+..                ++...|++++++.++..++.++..++.++.+
T Consensus       372 l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (417)
T d1pv7a_         372 MYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred             HHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence            76533                2345678888888888887777776554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=4.7e-13  Score=139.92  Aligned_cols=180  Identities=14%  Similarity=0.088  Sum_probs=140.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271           55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV  134 (609)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~  134 (609)
                      .+.++.+....++.....++...+.+.|+.+.++.+..+.++......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            45677777788888888889999999999999999999999999999999999999999999995 88765554444333


Q ss_pred             HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271          135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY  214 (609)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  214 (609)
                      +.........  .               ....+.+..++..++.|++.++..+....+..|.+|++.      |+++.|+
T Consensus       327 ~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~  383 (447)
T d1pw4a_         327 LVTIATIVYW--M---------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF  383 (447)
T ss_dssp             HHHHHHHHTT--S---------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHH
T ss_pred             HHHHHHHHHH--h---------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            3222222221  0               011456677777778888888888899999999999888      9999999


Q ss_pred             HHHHHhh-hHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 039271          215 FYFFLNV-GSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYL  258 (609)
Q Consensus       215 ~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  258 (609)
                      .+...++ |.+++|.+.|++.+.+||+..|++.+++.+++.+++.
T Consensus       384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            8888887 4567899999999999999999887766666555433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=4.3e-12  Score=129.65  Aligned_cols=146  Identities=12%  Similarity=-0.011  Sum_probs=122.4

Q ss_pred             HhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCc
Q 039271           85 RVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLS  164 (609)
Q Consensus        85 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (609)
                      +..+.+....+.......++..++.++.|++.||+ |||+++..+.++..++.+++.+.                     
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---------------------  309 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA---------------------  309 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc---------------------
Confidence            33455667778888888999999999999999996 99999999988887777766655                     


Q ss_pred             chhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHH-HHHHhhhHHHHhhhhhhcccccchhHHH
Q 039271          165 SIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYF-YFFLNVGSLFSNTILVYYEDSGKWTLGF  243 (609)
Q Consensus       165 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~~~~i~~~l~~~~g~~~~f  243 (609)
                       .+.+.+++..++.|++.+...+...+++.|.+|++.      |++.++.. .....+|..++|.+.|++.+.+|++..|
T Consensus       310 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~  382 (417)
T d1pv7a_         310 -TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY  382 (417)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             -cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence             557778888889999999999999999999999988      99999975 4567799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 039271          244 LVSLASAVIALLSYLM  259 (609)
Q Consensus       244 ~~~~~~~~~~~~~~~~  259 (609)
                      ++.+++.++..++..+
T Consensus       383 ~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         383 LVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888776666554443