Citrus Sinensis ID: 039274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
TPTIYFRKQLRQKKEKKEKKKKESMEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEcccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccHHHcccEEEccccccccccccccccEcHHHcccEHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEEccccEEccccEEc
Coil and Loop (DISEMBL)
TPTIYFRKQLRQKKEKKEKKKKESMedycrtssksswpelvgvkGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVdhhgivkytprig
Flexible Loop (DISEMBL)
tptiyfrkqlrqkkekkekkkkesmedycrtssksswpelvgVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWvdhhgivkytprig
Low Complexity Region (SEG)
TPTIYFRKQLRQkkekkekkkkeSMEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG
Disordered region (IsUnstruct)
************************************WPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYT****
Disordered Region (DISOPRED)
**********************************SSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG
Disordered Region (DISEMBL)
TPTIYFRKQ***************************WPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG
Disordered Region (DISPRO)
TPTIYFRKQLRQKKEKKEKKKKESMEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TPTIYFxxxxxxxxxxxxxxxxxxxxxYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
P82381	69	Proteinase inhibitor OS=L	N/A	no	0.687	0.956	0.530	4e-14
P19873	68	Inhibitor of trypsin and	N/A	no	0.666	0.941	0.562	7e-14
P24076	68	Glu S.griseus protease in	N/A	no	0.666	0.941	0.546	8e-13
Q6XNP7	70	Protease inhibitor HPI OS	N/A	no	0.656	0.9	0.523	3e-12
Q02214	94	Trypsin inhibitor 1 OS=Ni	N/A	no	0.760	0.776	0.391	5e-09
P20076	119	Ethylene-responsive prote	N/A	no	0.739	0.596	0.375	1e-08
P86971	86	Trypsin inhibitor OS=Fago	N/A	no	0.791	0.883	0.414	5e-08
Q03199	107	Proteinase inhibitor I-B	N/A	no	0.708	0.635	0.391	2e-07
P01052	71	Chymotrypsin inhibitor I,	N/A	no	0.656	0.887	0.421	2e-07
P16231	111	Wound-induced proteinase	N/A	no	0.739	0.639	0.416	2e-07

>sp|P82381|ICI_LINUS Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 45/66 (68%)

Query: 30 RTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIV 89
          R   K++WPELVG  G +AA  + REN  V AI++KEG  +T D+RCDRVWV V+ HG+V
Sbjct: 3  RCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVV 62

Query: 90 KYTPRI 95
             P I
Sbjct: 63 TSVPHI 68

In vitro, strong inhibitor of bovine beta-trypsin, weak inhibitor of alpha-chymotrypsin, subtilisin BPN', subtilisin Carlsberg and cathepsin G.
Linum usitatissimum (taxid: 4006)

>sp|P19873|ITH5_CUCMA Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 45/64 (70%)

Query: 33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYT 92
           KSSWP LVGV G VA  II R+N  V A+I++EG  VT D+RC+RV +WV+  G+V   
Sbjct: 5  GKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSP 64

Query: 93 PRIG 96
          PRIG
Sbjct: 65 PRIG 68

Specifically inhibits both trypsin and activated Hageman factor.

Cucurbita maxima (taxid: 3661)

>sp|P24076|BGIA_MOMCH Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 41/64 (64%)

Query: 33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYT 92
           K SWP+LVG  G  A  +I REN +V A+IV+ G  VT D+RCDRV VWV   GIV   
Sbjct: 5  GKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARP 64

Query: 93 PRIG 96
          P IG
Sbjct: 65 PAIG 68

Competitively inhibits Glu S.griseus protease by forming probably a 1:1 complex. BGIA has no inhibitory activity against 2 other acidic amino acid-specific endopeptidases (S.aureus protease V8 and B.subtilis proteinase), chymotrypsin, trypsin, pancreatic elastase, and papain, although subtilisin Carlsberg was strongly inhibited.

Momordica charantia (taxid: 3673)

>sp|Q6XNP7|HPI_HEVBR Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+SWPELVG  G++AA II  EN  V AI+VKEG  +T D   +RV V+VD + +V   P
Sbjct: 8  KNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVP 67

Query: 94 RIG 96
           IG
Sbjct: 68 AIG 70

Inhibitor of serine proteases, strongly inhibits subtilisin A and weakly inhibits trypsin. Does not inhibit chymotrypsin, papain, pepsin, pronase E, protease type XIII and thermolysin. HPI-1 inhibits subtilisin A with an Ki of 0.21 nM. HPI-2a inhibits subtilisin A with an Ki of 0.08 nM. HPI-2b inhibits subtilisin A with an Ki of 0.1 nM.

Hevea brasiliensis (taxid: 3981)

>sp|Q02214|ITR1_NICSY Trypsin inhibitor 1 OS=Nicotiana sylvestris PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 24 SMEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAII-VKEGFEVTMDYRCDRVWVW 82
          + +  C  + K +WPEL+GV  + A EII +EN K+  +  V  G  VT D+RC+RV ++
Sbjct: 21 TAQSSCPGNKKETWPELIGVPAKFAREIIQKENSKLTNVPSVLNGSPVTKDFRCERVRLF 80

Query: 83 VDHHGIVKYTPRIG 96
          V+    V   PR+G
Sbjct: 81 VNVLDFVVQIPRVG 94

Stress response. Inhibits trypsin. May play a role in the reentering of protoplasts into the cell cycle.

Nicotiana sylvestris (taxid: 4096)

>sp|P20076|IER1_SOLLC Ethylene-responsive proteinase inhibitor 1 OS=Solanum lycopersicum PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 26  EDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAI-IVKEGFEVTMDYRCDRVWVWVD 84
           + +C   +K SWPEL+G   + A +II +EN K+  +  +  G   T D RC+RV ++V+
Sbjct: 48  QSFCPGVTKESWPELLGTPAKFAKQIIQKENPKLTNVETLLNGSAFTEDLRCNRVRLFVN 107

Query: 85  HHGIVKYTPRIG 96
              IV  TP++G
Sbjct: 108 LLDIVVQTPKVG 119

Solanum lycopersicum (taxid: 4081)

>sp|P86971|ITI_FAGTA Trypsin inhibitor OS=Fagopyrum tataricum PE=1 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 6/82 (7%)

Query: 21 KKESMEDYCRT-SSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEV----TMDYR 75
          K E +    RT   K SWPELVG KG+ AA  I +EN  V A++      +    T D+R
Sbjct: 5  KVECLTTGVRTYVGKQSWPELVGTKGKTAAATIDKENTHVTAVLCPPLTTLAACRTFDFR 64

Query: 76 CDRVWVWVDH-HGIVKYTPRIG 96
          CDRV V ++   G+V  TP +G
Sbjct: 65 CDRVRVLINRIGGVVTKTPTVG 86

Serine protease inhibitor which is active against trypsin. Displays strong antifungal activity against a number of phytopathogenic fungi including M.melonis, A.cucumerina, A.solani, C.glaeosporioides and P.capsici.

Fagopyrum tataricum (taxid: 62330)

>sp|Q03199|IPIB_TOBAC Proteinase inhibitor I-B OS=Nicotiana tabacum GN=TIMPA PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 29  CRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAI-IVKEGFEVTMDYRCDRVWVWVDHHG 87
           C   +K  WPEL+G   + A +II +EN K+  +  V  G  VT D RC+RV ++V+   
Sbjct: 39  CPGVTKERWPELLGTPAKFAMQIIQKENPKLTNVQTVLNGTPVTEDLRCNRVRLFVNVLD 98

Query: 88  IVKYTPRIG 96
            V  TP++G
Sbjct: 99  FVVQTPQVG 107

Nicotiana tabacum (taxid: 4097)

>sp|P01052|ICIA_SOLTU Chymotrypsin inhibitor I, A, B and C subunits OS=Solanum tuberosum PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAI-IVKEGFEVTMDYRCDRVWVWVDHHGIVKYT 92
          K  WPEL+GV  ++A EII ++N  +  + I+  G  VTMD+RC+RV ++ D  G V   
Sbjct: 8  KLQWPELIGVPTKLAKEIIEKQNSLISNVHILLNGSPVTMDFRCNRVRLFDDILGSVVQI 67

Query: 93 PRIG 96
          PR+ 
Sbjct: 68 PRVA 71

Inhibits both chymotrypsin and trypsin.

Solanum tuberosum (taxid: 4113)

>sp|P16231|ICI1_SOLPE Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 25  MEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAI-IVKEGFEVTMDYRCDRVWVWV 83
            E   R   K  WPEL+GV    A  II +EN  +  I I+  G  VT D+RCDRV ++V
Sbjct: 39  FESDSRCKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFV 98

Query: 84  DHHGIVKYTPRI 95
           +  G V   PR+
Sbjct: 99  NILGDVVQIPRV 110

Solanum peruvianum (taxid: 4082)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
224117044	72	predicted protein [Populus trichocarpa]	0.75	1.0	0.694	7e-20
224093396	80	predicted protein [Populus trichocarpa]	0.802	0.962	0.649	8e-20
255559973	72	Inhibitor of trypsin and hageman factor,	0.75	1.0	0.680	4e-19
224114800	66	predicted protein [Populus trichocarpa]	0.677	0.984	0.723	7e-18
224102775	72	predicted protein [Populus trichocarpa]	0.656	0.875	0.666	7e-16
224086174	72	predicted protein [Populus trichocarpa]	0.739	0.986	0.619	1e-15
356576501	70	PREDICTED: proteinase inhibitor-like [Gl	0.729	1.0	0.625	2e-15
351727373	70	protease inhibitor-like [Glycine max] gi	0.729	1.0	0.625	2e-15
224111032	72	predicted protein [Populus trichocarpa]	0.656	0.875	0.650	2e-15
357441047	72	Inhibitor of trypsin and hageman factor	0.739	0.986	0.616	3e-15

>gi|224117044|ref|XP_002317460.1| predicted protein [Populus trichocarpa] gi|222860525|gb|EEE98072.1| predicted protein [Populus trichocarpa]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 57/72 (79%)

Query: 25 MEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD 84
          M D C  + KSSWPELVG+ GEVAA+II+REN KV A IVKEG  VTMD+RCDRV VWVD
Sbjct: 1  MTDVCPDAGKSSWPELVGINGEVAAKIIVRENPKVRAGIVKEGMMVTMDFRCDRVRVWVD 60

Query: 85 HHGIVKYTPRIG 96
           +GIVK  P+IG
Sbjct: 61 KYGIVKDIPQIG 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093396|ref|XP_002334836.1| predicted protein [Populus trichocarpa] gi|222875329|gb|EEF12460.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 20 KKKESMEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRV 79
          ++K  + D C  + KSSWPELVG+ GEVAA+II+REN KV A IVKEG  VTMD+RCDRV
Sbjct: 4  QEKGKITDVCPDAGKSSWPELVGINGEVAAKIIVRENPKVRAGIVKEGMMVTMDFRCDRV 63

Query: 80 WVWVDHHGIVKYTPRIG 96
           VWVD +GIVK  P+IG
Sbjct: 64 RVWVDKYGIVKDIPQIG 80

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559973|ref|XP_002521005.1| Inhibitor of trypsin and hageman factor, putative [Ricinus communis] gi|223539842|gb|EEF41422.1| Inhibitor of trypsin and hageman factor, putative [Ricinus communis]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 54/72 (75%)

Query: 25 MEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD 84
          M D C    K SWPELVG+KGEVA EII++EN KV A IVKEG  VTMD+RCDRV VWVD
Sbjct: 1  MADICTDPGKRSWPELVGIKGEVAVEIIVQENPKVGATIVKEGMMVTMDFRCDRVRVWVD 60

Query: 85 HHGIVKYTPRIG 96
           +GIVK  P IG
Sbjct: 61 KYGIVKDVPHIG 72

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114800|ref|XP_002316860.1| predicted protein [Populus trichocarpa] gi|224117040|ref|XP_002317459.1| predicted protein [Populus trichocarpa] gi|222859925|gb|EEE97472.1| predicted protein [Populus trichocarpa] gi|222860524|gb|EEE98071.1| predicted protein [Populus trichocarpa]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 54/65 (83%)

Query: 32 SSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKY 91
          + KSSWPELVG+ GEVAA+II+REN KV A IVKEG  VTMD+RCDRV VWVD +GIVK 
Sbjct: 2  AGKSSWPELVGINGEVAAKIIVRENPKVRAGIVKEGMMVTMDFRCDRVRVWVDKYGIVKD 61

Query: 92 TPRIG 96
           P+IG
Sbjct: 62 IPQIG 66

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102775|ref|XP_002334124.1| predicted protein [Populus trichocarpa] gi|222869703|gb|EEF06834.1| predicted protein [Populus trichocarpa]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 49/63 (77%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          KSSWPEL+G +G+VAA  I REN  V AIIV +G EV++D+RCDRVWVWVD  GIV   P
Sbjct: 10 KSSWPELLGAEGKVAAATIERENPLVEAIIVLDGSEVSLDFRCDRVWVWVDERGIVIEVP 69

Query: 94 RIG 96
          RIG
Sbjct: 70 RIG 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086174|ref|XP_002335221.1| predicted protein [Populus trichocarpa] gi|222833138|gb|EEE71615.1| predicted protein [Populus trichocarpa]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 50/71 (70%)

Query: 25 MEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD 84
          M D C  + KSSWPELVG+ GEVAA+II  EN KV   IV+EG  VT + RCDRV VWVD
Sbjct: 1  MTDVCSDTGKSSWPELVGINGEVAAKIIESENPKVRVSIVEEGMMVTQEIRCDRVRVWVD 60

Query: 85 HHGIVKYTPRI 95
           +GIVK  P I
Sbjct: 61 KNGIVKDIPSI 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576501|ref|XP_003556369.1| PREDICTED: proteinase inhibitor-like [Glycine max]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 25 MEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD 84
          M D C+   KSSWPELVGV+G VA   I REN  V AIIV EG  V  DYRCDRVWVW++
Sbjct: 1  MSDDCK--GKSSWPELVGVQGTVAEATIERENPLVNAIIVPEGNRVITDYRCDRVWVWIN 58

Query: 85 HHGIVKYTPRIG 96
            GIVK  P IG
Sbjct: 59 KDGIVKEVPHIG 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727373|ref|NP_001238694.1| protease inhibitor-like [Glycine max] gi|168259030|gb|ACA23204.1| putative protease inhibitor [Glycine max]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 25 MEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD 84
          M D C+   KSSWPELVGV+G VA   I REN  V AIIV EG  V  D+RCDRVWVW+D
Sbjct: 1  MSDDCK--GKSSWPELVGVQGTVAEATIERENPLVDAIIVPEGNMVITDFRCDRVWVWID 58

Query: 85 HHGIVKYTPRIG 96
            GIVK  P IG
Sbjct: 59 KDGIVKEVPHIG 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111032|ref|XP_002315724.1| predicted protein [Populus trichocarpa] gi|222864764|gb|EEF01895.1| predicted protein [Populus trichocarpa]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 49/63 (77%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          KSSWPEL+G +G+VAA  I REN  V AIIV +G +V++D+RCDRVWVWVD  GIV   P
Sbjct: 10 KSSWPELLGAEGKVAAATIERENPLVEAIIVLDGSKVSLDFRCDRVWVWVDERGIVIEVP 69

Query: 94 RIG 96
          RIG
Sbjct: 70 RIG 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441047|ref|XP_003590801.1| Inhibitor of trypsin and hageman factor [Medicago truncatula] gi|355479849|gb|AES61052.1| Inhibitor of trypsin and hageman factor [Medicago truncatula]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 51/73 (69%), Gaps = 2/73 (2%)

Query: 24 SMEDYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWV 83
          S +D C+   KSSWPELVGV+G+VA   I REN  V AIIV EG  V +D+RCDRVWVWV
Sbjct: 2  SYDDECK--GKSSWPELVGVEGKVAEATIERENPLVNAIIVPEGSAVILDFRCDRVWVWV 59

Query: 84 DHHGIVKYTPRIG 96
          D  GIV   P IG
Sbjct: 60 DKDGIVFKVPTIG 72

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
UNIPROTKB|Q6XNP7	70	PI1 "Protease inhibitor HPI" [	0.656	0.9	0.523	1.5e-12
TAIR|locus:2064981	70	AT2G38870 [Arabidopsis thalian	0.656	0.9	0.523	3.1e-12
TAIR|locus:2158397	103	AT5G43570 [Arabidopsis thalian	0.718	0.669	0.506	2.8e-11
TAIR|locus:2102822	85	AT3G46860 [Arabidopsis thalian	0.760	0.858	0.4	9.7e-09
UNIPROTKB|Q40059	84	Ica-2 "Chymotrypsin inhibitor	0.697	0.797	0.388	2e-08
TAIR|locus:2083058	96	AT3G50020 [Arabidopsis thalian	0.656	0.656	0.417	3.9e-05

UNIPROTKB|Q6XNP7 PI1 "Protease inhibitor HPI" [Hevea brasiliensis (taxid:3981)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/63 (52%), Positives = 42/63 (66%)

Query:    34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
             K+SWPELVG  G++AA II  EN  V AI+VKEG  +T D   +RV V+VD + +V   P
Sbjct:     8 KNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVP 67

Query:    94 RIG 96
              IG
Sbjct:    68 AIG 70

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IDA

TAIR|locus:2064981 AT2G38870 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query:    34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
             K+SWPEL G  G+ AA +I REN  V A ++ +G  VT D+RCDRV V+VD + IV  TP
Sbjct:     8 KNSWPELTGTNGDYAAVVIERENPTVNAAVILDGSPVTADFRCDRVRVFVDGNRIVVKTP 67

Query:    94 RIG 96
             + G
Sbjct:    68 KSG 70

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009611 "response to wounding" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2158397 AT5G43570 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 37/73 (50%), Positives = 44/73 (60%)

Query:    25 MEDYCRTSS----KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVW 80
             M D C+ ++    KSSWPELVG +GE   EII REN KV A I+ E   V     CDRV+
Sbjct:     1 MSDVCQNTAGEGMKSSWPELVGRRGEEVKEIIDRENTKVTAKIISENAVVLAVVICDRVY 60

Query:    81 VWVDHHGIVKYTP 93
             V V+  GIV  TP
Sbjct:    61 VRVNDQGIVTRTP 73

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009611 "response to wounding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=ISS

TAIR|locus:2102822 AT3G46860 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 30/75 (40%), Positives = 44/75 (58%)

Query:    24 SMED--YCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWV 81
             S ED   C    K  WPELVG  G++A   I REN  V+AI+++ G +   ++ C+RV+V
Sbjct:    11 SCEDPECCAIGKKYRWPELVGKNGQLAKMTIERENPNVLAIVLRYGEKRIENFCCNRVFV 70

Query:    82 WVDHHGIVKYTPRIG 96
             ++  +G V   P IG
Sbjct:    71 YLGSNGQVADAPMIG 85

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009611 "response to wounding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=ISS

UNIPROTKB|Q40059 Ica-2 "Chymotrypsin inhibitor 2" [Hordeum vulgare (taxid:4513)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:    30 RTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIV 89
             R + K+ WPELVG   E A ++I+++      I++  G  VTM+YR DRV ++VD    +
Sbjct:    18 RQNQKTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDRLDNI 77

Query:    90 KYTPRIG 96
                PR+G
Sbjct:    78 AQVPRVG 84

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2083058 AT3G50020 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 28/67 (41%), Positives = 34/67 (50%)

Query:    34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD----HHGIV 89
             K  WPEL GVKG  A  II  +N KVV +I+ +   V     C+RV V V      +G V
Sbjct:    30 KVDWPELNGVKGLEAKRIIEHDNPKVVVVIIPDDVAVLAVNCCNRVIVRVPVNNCPNGPV 89

Query:    90 KYTPRIG 96
                P IG
Sbjct:    90 SNFPHIG 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        85   0.00091  102 3  11 22  0.43    29
                                                     29  0.46    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  125 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.48u 0.14s 8.62t   Elapsed:  00:00:00
  Total cpu time:  8.48u 0.14s 8.62t   Elapsed:  00:00:00
  Start:  Fri May 10 18:06:46 2013   End:  Fri May 10 18:06:46 2013

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110821 hypothetical protein (72 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
pfam00280	63	pfam00280, potato_inhibit, Potato inhibitor I fami	9e-28

>gnl|CDD|201130 pfam00280, potato_inhibit, Potato inhibitor I family

 Score = 95.3 bits (238), Expect = 9e-28
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+SWPELVG  GE A  II +EN  V  +++ EG  VT D+RC+RV V+V+ +GIV  TP
Sbjct: 1  KTSWPELVGKTGEEAKAIIEKENPDVDVVVLPEGSPVTADFRCNRVRVFVNDNGIVVRTP 60

Query: 94 RIG 96
           IG
Sbjct: 61 VIG 63

Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
PF00280	63	potato_inhibit: Potato inhibitor I family; InterPr	99.97
PF11720	60	Inhibitor_I78: Peptidase inhibitor I78 family; Int	99.68

>PF00280 potato_inhibit: Potato inhibitor I family; InterPro: IPR000864 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.97  E-value=1.3e-31  Score=169.20  Aligned_cols=63  Identities=60%  Similarity=0.987  Sum_probs=59.4

Q ss_pred             CCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274           34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        34 k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      |+|||||||+++++|+++|++|||++++.+|++|+++|+|||||||+||+|++|+|+++|+||
T Consensus         1 K~sWPELVG~~~~~A~~~I~~e~P~v~v~vlp~gs~vt~df~~~RVrv~vd~~~~V~~~P~iG   63 (63)
T PF00280_consen    1 KTSWPELVGKSGEEAKAIIERENPDVTVVVLPEGSPVTMDFRCDRVRVFVDSNGIVVRVPRIG   63 (63)
T ss_dssp             -SB-GGGTTSBHHHHHHHHHHHSTTSEEEEEETTSEEESSBETTEEEEEEETTSBBES-SEEE
T ss_pred             CCCCchhcCCCHHHHHHHHHHHCCCCeEEEEeCCCCcCCCcCCCEEEEEECCCCeEEeCCCcC
Confidence            689999999999999999999999999999999999999999999999999999999999998

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteinase inhibitors belong to MEROPS inhibitor family I13, clan IG. They inhibit peptidases of the S1 (IPR001254 from INTERPRO) and S8 (IPR000209 from INTERPRO) families []. Potato inhibitor type I sequences are not solely restricted to potatoes but are found in other plant species for example: barley endosperm chymotrypsin inhibitor [], and pumpkin trypsin inhibitor. Exceptions are found in leech's, e.g.Hirudo medicinalis (Medicinal leech), but not other metazoa []. In general, the proteins have retained a specificity towards chymotrypsin-like and elastase-like proteases []. Structurally these inhibitors are small (60 to 90 residues) and in contrast with other families of protease inhibitors, they lack disulphide bonds. The inhibitor is a wedge-shaped molecule, its pointed edge formed by the protease-binding loop, which contains the scissile bond. The loop binds tightly to the protease active site, subsequent cleavage of the scissile bond causing inhibition of the enzyme []. The inhibitors (designated type I and II) are synthesised in potato tubers, increasing in concentration as the tuber develops. Synthesis of the inhibitors throughout the plant is also induced by leaf damage; this systemic response being triggered by the release of a putative plant hormone []. Examples found in the bacteria and archaea are probable false positives.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0009611 response to wounding; PDB: 1TEC_I 1SBN_I 1ACB_I 1EGP_A 3TEC_I 2SEC_I 1EGL_A 2TEC_I 1SIB_I 1MEE_I ....

>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78

Probab=99.68  E-value=1.8e-17  Score=103.04  Aligned_cols=54  Identities=31%  Similarity=0.423  Sum_probs=45.3

Q ss_pred             CccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEec
Q 039274           35 SSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYT   92 (96)
Q Consensus        35 ~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~v   92 (96)
                      +....|||++++++...-.    ...+|||+||+++|||||+|||||++|++|+|+++
T Consensus         4 ~~~q~lvGq~~~~~~~~~~----~~~~Rvi~Pg~~vTmDyr~dRLnv~~D~~g~I~~v   57 (60)
T PF11720_consen    4 AAAQSLVGQPASAAEREEL----AETVRVIRPGDAVTMDYRPDRLNVEVDDDGVITRV   57 (60)
T ss_pred             HHHHHhhCCCccccccccc----ccceEEeCCCCcCcccCCCCcEEEEECCCCcEEEE
Confidence            5566789999987653211    44699999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
1dwm_A	70	Solution Structure Of Linum Usitatissinum Trypsin I		4e-15
1mit_A	69	Recombinant Cucurbita Maxima Trypsin Inhibitor V (R		5e-15
1tin_A	69	Three-Dimensional Structure In Solution Of Cucurbit		5e-15
1vbw_A	68	Crystal Structure Of Bitter Gourd Trypsin Inhibitor		3e-14
3rdy_A	79	Crystal Structure Of Buckwheat Trypsin Inhibitor Rb		2e-13
2ci2_I	83	Crystal And Molecular Structure Of The Serine Prote		1e-07
1y3d_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-07
1coa_I	64	The Effect Of Cavity Creating Mutations In The Hydr		1e-07
3ci2_A	66	Refinement Of The Three-Dimensional Solution Struct		1e-07
1tm1_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-07
1lw6_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-07
1y3b_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		2e-07
1ypc_I	64	Direct Observation Of Better Hydration At The N-Ter		2e-07
1ypa_I	64	Direct Observation Of Better Hydration At The N-Ter		3e-07
1y34_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		3e-07
1y3f_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		4e-07
1ypb_I	64	Direct Observation Of Better Hydration At The N-Ter		5e-07
1y1k_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		5e-07
1y33_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		6e-07
1tmg_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		6e-07
1tm5_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		8e-07
1y48_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		9e-07
1y3c_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		9e-07
1tm3_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1tm7_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1to1_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1y4a_I	64	Crystal Structure Of The Complex Of Subtilisin Bpn'		1e-06
1tm4_I	64	Crystal Structure Of The Complex Of Subtilsin Bpn'w		2e-06
1hym_A	45	Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Ave		8e-06
1cis_A	66	Context Dependence Of Protein Secondary Structure F		5e-04

>pdb|1DWM|A Chain A, Solution Structure Of Linum Usitatissinum Trypsin Inhibitor (Luti) Length = 70

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 30 RTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIV 89
          R   K++WPELVG  G +AA  + REN  V AI++KEG  +T D+RCDRVWV V+ HG+V
Sbjct: 4  RCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVV 63
Query: 90 KYTPRI 95
             P I
Sbjct: 64 TSVPHI 69

>pdb|1MIT|A Chain A, Recombinant Cucurbita Maxima Trypsin Inhibitor V (Rcmti-V) (Nmr, Minimized Average Structure) Length = 69

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 45/63 (71%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          KSSWP LVGV G VA  II R+N  V A+I++EG  VT D+RC+RV +WV+  G+V   P
Sbjct: 7  KSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPP 66
Query: 94 RIG 96
          RIG
Sbjct: 67 RIG 69

>pdb|1TIN|A Chain A, Three-Dimensional Structure In Solution Of Cucurbita Maxima Trypsin Inhibitor-V Determined By Nmr Spectroscopy Length = 69

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 45/63 (71%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          KSSWP LVGV G VA  II R+N  V A+I++EG  VT D+RC+RV +WV+  G+V   P
Sbjct: 7  KSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPP 66
Query: 94 RIG 96
          RIG
Sbjct: 67 RIG 69

>pdb|1VBW|A Chain A, Crystal Structure Of Bitter Gourd Trypsin Inhibitor Length = 68

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 42/67 (62%)
Query: 30 RTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIV 89
          R   KSSWP+LVG  G  A  +I REN +V A+I+K G   T D+RCDRV VWV   GIV
Sbjct: 2  RCQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIV 61
Query: 90 KYTPRIG 96
             P IG
Sbjct: 62 ARPPTIG 68

>pdb|3RDY|A Chain A, Crystal Structure Of Buckwheat Trypsin Inhibitor Rbti At 1.84 Angstrom Resolution Length = 79

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 42/64 (65%)
Query: 30 RTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIV 89
          + S K  WPELVG +G  AA+II  EN  V AI++ EG  V  D RCDRVWV+VD  G+V
Sbjct: 13 QCSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVV 72
Query: 90 KYTP 93
            TP
Sbjct: 73 VDTP 76

>pdb|2CI2|I Chain I, Crystal And Molecular Structure Of The Serine Proteinase Inhibitor Ci-2 From Barley Seeds Length = 83

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 30 RTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIV 89
          R + K+ WPELVG   E A ++I+++  +   I++  G  VTM+YR DRV ++VD    +
Sbjct: 17 RHNLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNI 76
Query: 90 KYTPRIG 96
             PR+G
Sbjct: 77 AEVPRVG 83

>pdb|1Y3D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 R67a Mutant Length = 64

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVALFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1COA|I Chain I, The Effect Of Cavity Creating Mutations In The Hydrophobic Core Of Chymotrypsin Inhibitor 2 Length = 64

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++  +   I++  G  VTM+YR DRV ++VD    V   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNVAEVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|3CI2|A Chain A, Refinement Of The Three-Dimensional Solution Structure Of Barley Serine Proteinase Inhibitor 2 And Comparison With The Structures In Crystals Length = 66

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++  +   I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 4  KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 63
Query: 94 RIG 96
          R+G
Sbjct: 64 RVG 66

>pdb|1TM1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 Length = 64

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1LW6|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 64

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y3B|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 E60s Mutant Length = 64

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMSYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1YPC|I Chain I, Direct Observation Of Better Hydration At The N-Terminus Of An Alpha-Helix With Glycine Rather Than Alanine As N-Cap Length = 64

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG     A ++I+++  +   I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1YPA|I Chain I, Direct Observation Of Better Hydration At The N-Terminus Of An Alpha-Helix With Glycine Rather Than Alanine As N-Cap Length = 64

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG     A ++I+++  +   I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKAVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y34|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 E60a Mutant Length = 64

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMAYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y3F|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 F69a Mutant Length = 64

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM+YR DRV + VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLAVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1YPB|I Chain I, Direct Observation Of Better Hydration At The N-Terminus Of An Alpha-Helix With Glycine Rather Than Alanine As N-Cap Length = 64

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG     A ++I+++  +   I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKGVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y1K|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 T58a Mutant Length = 64

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  V M+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVAMEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y33|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 T58p Mutant Length = 64

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  V M+YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVPMEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1TMG|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59f Mutant Length = 64

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT +YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTFEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1TM5|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59a Mutant Length = 64

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT +YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTAEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y48|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 R65a Mutant Length = 64

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM+YR D V ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDAVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y3C|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 R62a Mutant Length = 64

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM+Y  DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYAIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1TM3|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59k Mutant Length = 64

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT +YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1TM7|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59y Mutant Length = 64

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT +YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTYEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1TO1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 Y61a Mutant Length = 64

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VTM+ R DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEARIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1Y4A|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 M59r/e60s Mutant Length = 64

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT  YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTRSYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1TM4|I Chain I, Crystal Structure Of The Complex Of Subtilsin Bpn'with Chymotrypsin Inhibitor 2 M59g Mutant Length = 64

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT +YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTGEYRIDRVRLFVDRLDNIAQVP 61
Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>pdb|1HYM|A Chain A, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average Nmr Structure) Length = 45

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 27/38 (71%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVT 71
          KSSWP LVGV G VA  II R+N  V A+I++EG  VT
Sbjct: 7  KSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVT 44

>pdb|1CIS|A Chain A, Context Dependence Of Protein Secondary Structure Formation. The Three-Dimensional Structure And Stability Of A Hybrid Between Chymotrypsin Inhibitor 2 And Helix E From Subtilisin Carlsberg Length = 66

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGF--EVTMDYRCDRVWVWVDHHGIVKY 91
          K+ WPELVG   E A ++I+++  +   I++++        +YR DRV + VD    +  
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPEAQIIVLEKQAVDNAYAEYRIDRVRLAVDKLDNIAQ 61
Query: 92 TPRIG 96
           PR+G
Sbjct: 62 VPRVG 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
1vbw_A	68	Trypsin inhibitor BGIT; BGTI, protein binding; HET	2e-28
1mit_A	69	RCMTI-V, trypsin inhibitor V; serine protease inhi	3e-28
1to2_I	64	Chymotrypsin inhibitor 2; serine protease, hydrola	3e-28
2ci2_I	83	Chymotrypsin inhibitor 2; proteinase inhibitor (ch	4e-28
1dwm_A	70	LUTI, linum usitatissinum trypsin inhibitor; serin	5e-28
3rdy_A	79	BWI-1=protease inhibitor/trypsin inhibitor; serine	9e-28
1cse_I	70	Eglin C; complex(serine proteinase-inhibitor); 1.2	1e-26
1hym_A	45	CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi	6e-14
1cq4_A	47	Protein (serine proteinase inhibitor 2); serine pr	6e-07
1hym_B	26	CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi	2e-04

>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia} Length = 68

 Score = 96.7 bits (241), Expect = 2e-28
 Identities = 35/63 (55%), Positives = 41/63 (65%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          KSSWP+LVG  G  A  +I REN +V A+I+K G   T D+RCDRV VWV   GIV   P
Sbjct: 6  KSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVARPP 65

Query: 94 RIG 96
           IG
Sbjct: 66 TIG 68

>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A Length = 69

 Score = 96.3 bits (240), Expect = 3e-28
 Identities = 36/63 (57%), Positives = 45/63 (71%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          KSSWP LVGV G VA  II R+N  V A+I++EG  VT D+RC+RV +WV+  G+V   P
Sbjct: 7  KSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPP 66

Query: 94 RIG 96
          RIG
Sbjct: 67 RIG 69

>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ... Length = 64

 Score = 95.9 bits (239), Expect = 3e-28
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT +YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61

Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I Length = 83

 Score = 96.5 bits (240), Expect = 4e-28
 Identities = 25/63 (39%), Positives = 39/63 (61%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++  +   I++  G  VTM+YR DRV ++VD    +   P
Sbjct: 21 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVP 80

Query: 94 RIG 96
          R+G
Sbjct: 81 RVG 83

>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1 Length = 70

 Score = 95.5 bits (238), Expect = 5e-28
 Identities = 34/62 (54%), Positives = 44/62 (70%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K++WPELVG  G +AA  + REN  V AI++KEG  +T D+RCDRVWV V+ HG+V   P
Sbjct: 8  KNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVP 67

Query: 94 RI 95
           I
Sbjct: 68 HI 69

>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} PDB: 3rdz_C Length = 79

 Score = 95.2 bits (237), Expect = 9e-28
 Identities = 34/62 (54%), Positives = 41/62 (66%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K  WPELVG +G  AA+II  EN  V AI++ EG  V  D RCDRVWV+VD  G+V  TP
Sbjct: 17 KQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTP 76

Query: 94 RI 95
           +
Sbjct: 77 VV 78

>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B Length = 70

 Score = 92.4 bits (230), Expect = 1e-26
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 32 SSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHH-GIVK 90
          S   S+PE+VG   + A E       +     + EG  VT+D R +RV V+ +    +V 
Sbjct: 5  SELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVN 64

Query: 91 YTPRIG 96
          + P +G
Sbjct: 65 HVPHVG 70

>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Length = 45

 Score = 59.4 bits (144), Expect = 6e-14
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVT 71
          KSSWP LVGV G VA  II R+N  V A+I++EG  VT
Sbjct: 7  KSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVT 44

>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1 Length = 47

 Score = 41.5 bits (97), Expect = 6e-07
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYR 75
          K+ WPELVG   E A ++I+++  +   I++  G  VTM  +
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQ 43

>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Length = 26

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 73 DYRCDRVWVWVDHHGIVKYTPRIG 96
          D+RC+RV +WV+  G+V   PRIG
Sbjct: 1  DFRCNRVRIWVNKRGLVVSPPRIG 24

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
1mit_A	69	RCMTI-V, trypsin inhibitor V; serine protease inhi	100.0
1vbw_A	68	Trypsin inhibitor BGIT; BGTI, protein binding; HET	100.0
1dwm_A	70	LUTI, linum usitatissinum trypsin inhibitor; serin	99.98
1to2_I	64	Chymotrypsin inhibitor 2; serine protease, hydrola	99.97
1cse_I	70	Eglin C; complex(serine proteinase-inhibitor); 1.2	99.97
3rdy_A	79	BWI-1=protease inhibitor/trypsin inhibitor; serine	99.97
2ci2_I	83	Chymotrypsin inhibitor 2; proteinase inhibitor (ch	99.97
1cq4_A	47	Protein (serine proteinase inhibitor 2); serine pr	99.89
1hym_A	45	CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi	99.74
1hym_B	26	CMTI-V, hydrolyzed cucurbita maxima trypsin inhibi	99.25

>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A

Probab=100.00  E-value=1.3e-33  Score=179.25  Aligned_cols=67  Identities=55%  Similarity=0.994  Sum_probs=65.4

Q ss_pred             hhCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274           28 YCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        28 ~C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      .|+  +|++||||||+++++|+.+|++|+|++.++||++|++|||||||||||||+|++|+|+++|+||
T Consensus         3 ~c~--~K~sWpELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Dfr~~RV~V~vD~~g~V~~vP~vG   69 (69)
T 1mit_A            3 SCP--GKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG   69 (69)
T ss_dssp             CCS--SCSCCCCCTTSHHHHHHHHHHHHCTTSEEEEEETTCCCCSSCCTTEEEEEEETTTEEECCSSCC
T ss_pred             CCC--CcCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence            587  8999999999999999999999999999999999999999999999999999999999999998

>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}

Probab=100.00  E-value=1.8e-33  Score=178.20  Aligned_cols=67  Identities=54%  Similarity=0.952  Sum_probs=65.3

Q ss_pred             hhCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274           28 YCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        28 ~C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      .|+  +|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus         2 ~c~--~K~sWpELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~vG   68 (68)
T 1vbw_A            2 RCQ--GKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVARPPTIG   68 (68)
T ss_dssp             CSC--SCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTSCCCCSCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CCC--CCCcCHHHCCcCHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEecCcCC
Confidence            487  8999999999999999999999999999999999999999999999999999999999999998

>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1

Probab=99.98  E-value=7.3e-33  Score=175.82  Aligned_cols=67  Identities=52%  Similarity=0.962  Sum_probs=65.3

Q ss_pred             hhCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274           28 YCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        28 ~C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      .|+  +|++||||||+++++|+.+|++|+|++.++||+||+++||||||||||||||++|+|+++|+||
T Consensus         4 ~c~--~k~sWpelVG~~~~~A~~~i~~e~p~~~vrvl~pg~~vT~Dfr~~RV~v~vD~~g~V~~vP~ig   70 (70)
T 1dwm_A            4 RCP--GKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHIT   70 (70)
T ss_dssp             CCS--SCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBBC
T ss_pred             cCC--ChhHhHHHcCCcHHHHHHHHHHhCCCceEEEecCCCccCCccCCCeEEEEECCCCeEEeCCcCC
Confidence            587  8999999999999999999999999999999999999999999999999999999999999998

>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...

Probab=99.97  E-value=1.1e-32  Score=172.86  Aligned_cols=64  Identities=38%  Similarity=0.646  Sum_probs=62.2

Q ss_pred             CCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274           33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        33 ~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      .|+|||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus         1 ~k~sWPELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~iG   64 (64)
T 1to2_I            1 MKTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG   64 (64)
T ss_dssp             -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CCcCCHhhCCCcHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCeEEecCcCC
Confidence            3799999999999999999999999999999999999999999999999999999999999998

>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B

Probab=99.97  E-value=3.7e-32  Score=173.09  Aligned_cols=65  Identities=31%  Similarity=0.455  Sum_probs=61.4

Q ss_pred             CCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEEC-CCCCEEecCcCC
Q 039274           32 SSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD-HHGIVKYTPRIG   96 (96)
Q Consensus        32 ~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD-~~g~V~~vP~vG   96 (96)
                      .+|++||||||+++++|+.+|++|+|++.++||++|+++|||||||||||||| ++|+|+++|+||
T Consensus         5 ~~k~sWPELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~V~vD~~~g~V~~vP~iG   70 (70)
T 1cse_I            5 SELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG   70 (70)
T ss_dssp             ---CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred             CCCCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCccCCCeEEEEEcCCCCEEEeCCcCC
Confidence            47899999999999999999999999999999999999999999999999999 999999999998

>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C

Probab=99.97  E-value=8.6e-32  Score=175.69  Aligned_cols=63  Identities=54%  Similarity=0.919  Sum_probs=62.3

Q ss_pred             CCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcC
Q 039274           33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRI   95 (96)
Q Consensus        33 ~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~v   95 (96)
                      +|+|||||||+++++|+++|++|||++.++||++|+++||||||||||||||++|+|+++|+|
T Consensus        16 ~K~sWPELVG~~~~~A~~~I~~e~P~v~v~Vl~~Gs~VT~Dfr~~RVrV~VD~~g~V~~~P~i   78 (79)
T 3rdy_A           16 GKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTPVV   78 (79)
T ss_dssp             SCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCSSEEEEEECTTSBBCSCCBB
T ss_pred             CCCcChHHCCcCHHHHHHHHHHHCCCCceEEeCCCCccCCccCCCEEEEEECCCCeEEeCcee
Confidence            899999999999999999999999999999999999999999999999999999999999997

>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I

Probab=99.97  E-value=1.1e-31  Score=175.89  Aligned_cols=65  Identities=38%  Similarity=0.670  Sum_probs=63.7

Q ss_pred             CCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274           32 SSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        32 ~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      .+|++||||||+++++|+.+|++|+|++.++||++|++|||||||||||||||++|+|+++|+||
T Consensus        19 ~~K~sWPELVG~~~~~A~~~I~~d~p~v~vrVl~~G~~VT~Dfr~dRV~V~vD~~g~V~~vP~vG   83 (83)
T 2ci2_I           19 NLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVPRVG   83 (83)
T ss_dssp             CCCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CChhhhHHHcCCcHHHHHHHHHhhCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence            47999999999999999999999999999999999999999999999999999999999999998

>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1

Probab=99.89  E-value=8.3e-24  Score=125.76  Aligned_cols=47  Identities=32%  Similarity=0.515  Sum_probs=36.5

Q ss_pred             CCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeE
Q 039274           33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRV   79 (96)
Q Consensus        33 ~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV   79 (96)
                      .|+|||||||+++++|+++|++|||++.++||++|++|||||||||+
T Consensus         1 ~K~sWPELVG~~~~~A~~~I~~e~p~v~v~vl~~gs~vT~Df~~~R~   47 (47)
T 1cq4_A            1 MKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQQQGM   47 (47)
T ss_dssp             -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCC---------
T ss_pred             CCcCChhhcCccHHHHHHHHHHHCCCCEEEEeCCCCCcCcccCCCCC
Confidence            37999999999999999999999999999999999999999999996

>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1

Probab=99.74  E-value=1.6e-18  Score=102.46  Aligned_cols=42  Identities=57%  Similarity=0.880  Sum_probs=40.8

Q ss_pred             hCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccC
Q 039274           29 CRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTM   72 (96)
Q Consensus        29 C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTm   72 (96)
                      |+  +|+|||||||.++++|+++|++|||++.+.||++|++||+
T Consensus         4 c~--~K~sWPELVG~~~~~A~~~I~~e~P~v~v~vl~~gs~vT~   45 (45)
T 1hym_A            4 CP--GKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK   45 (45)
T ss_dssp             CC--SCSBCCCCTTSCHHHHHHHHHHHCTTCEEEEEECCSCCCC
T ss_pred             CC--CCCcChhhcCCcHHHHHHHHHHHCCCCeEEEecCCCcCCC
Confidence            87  8999999999999999999999999999999999999996

>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1

Probab=99.25  E-value=2.9e-12  Score=67.91  Aligned_cols=24  Identities=54%  Similarity=1.262  Sum_probs=23.5

Q ss_pred             CCcCCeEEEEECCCCCEEecCcCC
Q 039274           73 DYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        73 Dfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      ||+|+||+||+|++|+|+++|+||
T Consensus         1 Df~~~RVrvfvd~~g~V~~~P~iG   24 (26)
T 1hym_B            1 DFRCNRVRIWVNKRGLVVSPPRIG   24 (26)
T ss_dssp             CCCTTEEEEEEETTTEEECCSBCC
T ss_pred             CCCCCEEEEEECCCCcEEECCccc
Confidence            899999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
g1hym.1	68	d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cuc	1e-29
d1dwma_	69	d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum	7e-29
d1to2i_	64	d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley	1e-28
d1csei_	63	d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis)	7e-26

>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]} Length = 69

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Trypsin inhibitor LUTI
species: Flax (Linum usitatissimum) [TaxId: 4006]

 Score = 96.7 bits (241), Expect = 7e-29
 Identities = 34/62 (54%), Positives = 44/62 (70%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K++WPELVG  G +AA  + REN  V AI++KEG  +T D+RCDRVWV V+ HG+V   P
Sbjct: 7  KNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVP 66

Query: 94 RI 95
           I
Sbjct: 67 HI 68

>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 64

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Chymotrypsin inhibitor CI-2
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 95.9 bits (239), Expect = 1e-28
 Identities = 24/63 (38%), Positives = 37/63 (58%)

Query: 34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTP 93
          K+ WPELVG   E A ++I+++      I++  G  VT +YR DRV ++VD    +   P
Sbjct: 2  KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61

Query: 94 RIG 96
          R+G
Sbjct: 62 RVG 64

>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]} Length = 63

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Eglin C
species: Leech (Hirudo medicinalis) [TaxId: 6421]

 Score = 89.0 bits (221), Expect = 7e-26
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 36 SWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHH-GIVKYTPR 94
          S+PE+VG   + A E       +     + EG  VT+D R +RV V+ +    +V + P 
Sbjct: 2  SFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPH 61

Query: 95 IG 96
          +G
Sbjct: 62 VG 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
g1hym.1	68	Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [T	100.0
d1dwma_	69	Trypsin inhibitor LUTI {Flax (Linum usitatissimum)	99.98
d1to2i_	64	Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulga	99.97
d1csei_	63	Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}	99.97
d1pyya1	61	Penicillin-binding protein 2x (pbp-2x), c-terminal	90.49
d1pyya2	58	Penicillin-binding protein 2x (pbp-2x), c-terminal	81.76

>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Trypsin inhibitor LUTI
species: Flax (Linum usitatissimum) [TaxId: 4006]

Probab=99.98  E-value=1.9e-33  Score=178.19  Aligned_cols=67  Identities=52%  Similarity=0.966  Sum_probs=65.3

Q ss_pred             hhhCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcC
Q 039274           27 DYCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRI   95 (96)
Q Consensus        27 ~~C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~v   95 (96)
                      +.|+  ||+|||||||.++++|+++|++|||++.+.++++|+++|+|||||||+||||++|+|+++|+|
T Consensus         2 ~~C~--gK~sWPELVG~~~~~A~~~I~~enp~v~v~v~~~gs~vt~Dfr~~RVrv~Vd~~g~V~~~P~I   68 (69)
T d1dwma_           2 RRCP--GKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI   68 (69)
T ss_dssp             CCCS--SCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBB
T ss_pred             CcCC--CCCcCHHHCCCCHHHHHHHHHHHCCCceEEEeeCCCcccCcccCCEEEEEECCCCcEEecccc
Confidence            4699  899999999999999999999999999999999999999999999999999999999999997

>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Chymotrypsin inhibitor CI-2
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.97  E-value=1.1e-32  Score=172.51  Aligned_cols=63  Identities=38%  Similarity=0.664  Sum_probs=62.3

Q ss_pred             CCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274           34 KSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG   96 (96)
Q Consensus        34 k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG   96 (96)
                      |+|||||||.++++|+++|++|||++.+.++++|+++|+|||||||+||||++|+|+++|+||
T Consensus         2 K~sWPELVG~~~~~Ak~~I~~e~p~v~v~v~p~gs~vt~Dfr~~RVrv~Vd~~g~V~~~P~iG   64 (64)
T d1to2i_           2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG   64 (64)
T ss_dssp             CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred             CccChhhcCCCHHHHHHHHHHhCCCceEEEecCCCcccCcccCCEEEEEECCCCeEEeCCCCC
Confidence            799999999999999999999999999999999999999999999999999999999999998

>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}

class: Alpha and beta proteins (a+b)
fold: CI-2 family of serine protease inhibitors
superfamily: CI-2 family of serine protease inhibitors
family: CI-2 family of serine protease inhibitors
domain: Eglin C
species: Leech (Hirudo medicinalis) [TaxId: 6421]

Probab=99.97  E-value=2.6e-31  Score=165.68  Aligned_cols=62  Identities=31%  Similarity=0.477  Sum_probs=60.5

Q ss_pred             CccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECC-CCCEEecCcCC
Q 039274           35 SSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDH-HGIVKYTPRIG   96 (96)
Q Consensus        35 ~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~-~g~V~~vP~vG   96 (96)
                      +|||||||+++++|+++|++|||++.+.++++|+++|+|||||||+||||+ +|+|+++|+||
T Consensus         1 ~SWPELVG~~~~~A~~~I~~e~p~v~v~v~p~gs~vt~Dfr~~RVrv~Vd~~~g~V~~~P~iG   63 (63)
T d1csei_           1 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG   63 (63)
T ss_dssp             CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred             CCChhhcCCCHHHHHHHHHHHCCCceEEEEeCCCcccCcccCCEEEEEEECCCCEEEeCCCCC
Confidence            589999999999999999999999999999999999999999999999996 79999999998

>d1pyya1 d.11.1.1 (A:632-692) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
domain: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.49  E-value=0.37  Score=27.21  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=33.4

Q ss_pred             CccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCC--------CcCCeEEEEEC
Q 039274           35 SSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMD--------YRCDRVWVWVD   84 (96)
Q Consensus        35 ~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmD--------fr~dRV~V~vD   84 (96)
                      -.-|+|+|.+..+|...+...  ++.++|+-.|..|+.-        -.-.+|.|+.|
T Consensus         5 ~~vP~v~g~s~~~A~~~L~~~--gl~~~v~G~G~~V~~QsP~~G~~v~~g~~V~L~T~   60 (61)
T d1pyya1           5 YPMPSVKDISPGDLAEELRRN--LVQPIVVGTGTKIKNSSAEEGKNLAPNQQVLILSD   60 (61)
T ss_dssp             CBCCCCSSCCHHHHHHHHHHT--TCEEEEESSCSSEEEESSCTTCBCCTTCEEEEEES
T ss_pred             ccCCcccCCCHHHHHHHHHHC--CCeEEEecCCCEEEEEccCCCcccCCCCEEEEEeC
Confidence            467999999999999888766  5667777777654321        23456666665

>d1pyya2 d.11.1.1 (A:693-750) Penicillin-binding protein 2x (pbp-2x), c-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
superfamily: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
family: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
domain: Penicillin-binding protein 2x (pbp-2x), c-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.76  E-value=1.1  Score=24.63  Aligned_cols=31  Identities=16%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             CccccccCcchHHHHHHHHHHcCCCeEEEecCC
Q 039274           35 SSWPELVGVKGEVAAEIIMRENGKVVAIIVKEG   67 (96)
Q Consensus        35 ~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pG   67 (96)
                      ..-|+|+|++..+|...+...  ++.+.+.-.|
T Consensus         2 ~evPdl~G~s~~~A~~~l~~~--gl~v~~~g~g   32 (58)
T d1pyya2           2 EEVPDMYGWTKETAETLAKWL--NIELEFQGSG   32 (58)
T ss_dssp             CBCCCCTTCBHHHHHHHHHHT--TCEEEEESCC
T ss_pred             CcCCCcCCCcHHHHHHHHHHc--CCEEEEecCc
Confidence            567999999999999887665  4555554444