Citrus Sinensis ID: 039300

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYYHVNPDKLIYFHHLSTFRESKMSVWQVRKL
Secondary Structure (PSIPRED)
ccccHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHcccccccHHHHHHHcccHHHHHHHHHccccccHccccccccHHHHHHHcccHHHHHHHHHccccccHcccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHccHHHHHHHHccccHHHHHccccccccHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccEEEEEEEccEEEEEEccccEEEEcccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MDETPLHIAARIGDHAIVSEIMKYVpavnqagsaSVLETLFgmrdiegntplhnvvtKKHKRVIRILVEkdsapssyinkayqtplsIAIDVRLNDIACFIidksseslnatrlpdelTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLdwhqrnplhyaaaSGNVQMVQRLLEASKQLAYkrdcngatplhlaAENGELKVLKLLINKypdaieirdnsdRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNiraknrsarnnttleideMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLLVMATLIATFLFTaaftipggfksdgldegtTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSllpfifyvfAPFFMIMLCKSVRVTIVCKldahyyhvnpdkliyFHHLSTFRESKMSVWQVRKL
Flexible Loop (DISEMBL)
MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIegntplhnvvtkkhkRVIRILvekdsapssyiNKAYQTPLSIAIDVRLNDIACFIIDksseslnatrlPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKsvniraknrsarnnttleidemtradVTEVQKHLTLKALKTAYAKRALSAEelqqkrqvskeegekgKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYYHVNPDKLIYFHHLSTfreskmsvwqvrkl
Low Complexity Region (SEG)
MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLLVMatliatflftaaftiPGGFKSDGLDEGTTTLLHRatmtstmaaaaIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYYHVNPDKLIYFHHLSTFRESKMSVWQVRKL
Disordered region (IsUnstruct)
******HIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNI**********************VTEVQKHLTLKALKTAY****************************QTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYYHVNPDKLIYFHHLSTFRESKMSVW*****
Disordered Region (DISOPRED)
MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTA***************************MAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAH************HHLSTFRESKMSVWQVRKL
Disordered Region (DISEMBL)
MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALS*******************EMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYYHVNPDKLIYFHHLSTFRES**********
Disordered Region (DISPRO)
*DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYYHVNPDKLIYFHHLSTFRESKMSVWQVRKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYYHVNPDKLIYFHHLSTFRESKMSVWQVRKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.797	0.722	0.242	2e-19
P57078	832	Receptor-interacting seri	yes	no	0.483	0.310	0.291	8e-19
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.604	0.616	0.251	2e-18
Q9ERK0	786	Receptor-interacting seri	yes	no	0.481	0.326	0.290	7e-18
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.528	0.143	0.266	1e-16
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.490	0.139	0.276	2e-16
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.490	0.059	0.267	8e-16
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.501	0.143	0.252	2e-15
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.726	0.729	0.233	6e-15
Q8N8A2	993	Serine/threonine-protein	no	no	0.485	0.260	0.290	2e-14

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 213/478 (44%), Gaps = 52/478 (10%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQ---------AGSASVLETLFGMRDIEGNTPL 52
           ++T LH+AA+ GD A V +I+K + +  +         A  A +  ++    +  G T L
Sbjct: 74  NDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETAL 133

Query: 53  HNVVTKKHKRVIRILVEKDSAPS-SYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNA 111
                K H  V++ L++  S  S +  N++   PL IA     + I   ++D  + +L+ 
Sbjct: 134 FTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDA-TLSQ 192

Query: 112 TRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAA 171
           T  P   T L    MR +             +++ ++L    +L+     + +N LH AA
Sbjct: 193 TFGPSNATPLVSAAMRGH------------TEVVNQLLSKAGNLLEISRSNNKNALHLAA 240

Query: 172 ASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSD 231
             G+V++++ LL    QLA + D  G T LH+A +    +V+KLL++  P  +   D S 
Sbjct: 241 RQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSC 300

Query: 232 RSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS 291
            + LHVA +     IV  +L  P+     N + R+  T+L +A  GL       LS   S
Sbjct: 301 NTALHVATRKKRAEIVELLLSLPDTN--ANTLTRDHKTALDIAE-GL------PLSEESS 351

Query: 292 V--NIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQV 349
                 A++ + R N   +  +  R+ VT+++  + ++  +T    + +        +++
Sbjct: 352 YIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVH----NISKEL 407

Query: 350 SKEEGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTS--- 406
            K   E       ++ V+A L AT  F A FT+PGG  +D    G+  ++ RA+      
Sbjct: 408 RKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNND----GSAVVVGRASFKIFFI 463

Query: 407 -------TMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLS 457
                  T  A  +V  +  R +T++    + +     W+A +  ++ F+   Y V+ 
Sbjct: 464 FNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVG 521

Arabidopsis thaliana (taxid: 3702)

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 139/295 (47%), Gaps = 37/295 (12%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
           T LH AA+ GD +    +++   +VN+              D EG TP+H       + +
Sbjct: 554 TALHFAAQNGDESSTRLLLEKNASVNEV-------------DFEGRTPMHVACQHGQENI 600

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
           +RIL+ +     S   K    PL  A       I   +  +   S+NA  L D  T LH 
Sbjct: 601 VRILLRR-GVDVSLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL-DGRTPLHL 658

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
              R +Y +++ +     ID+   +        N      + PLH AA +G+    + LL
Sbjct: 659 AAQRGHYRVARIL-----IDLCSDV--------NVCSLLAQTPLHVAAETGHTSTARLLL 705

Query: 184 -EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 242
              + + A   D  G T LHLAA NG L  +KLL+ +  D +  R   +++ LH+AA HG
Sbjct: 706 HRGAGKEAMTSD--GYTALHLAARNGHLATVKLLVEEKADVL-ARGPLNQTALHLAAAHG 762

Query: 243 NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS-VNIRA 296
           +  +V  ++ +    ++I+L D  G ++LHLAA G H+  V TL RH + +N+++
Sbjct: 763 HSEVVEELVSA----DVIDLFDEQGLSALHLAAQGRHAQTVETLLRHGAHINLQS 813

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 163/385 (42%), Gaps = 62/385 (16%)

Query: 49  NTPLHNVVTK-KHKRVIRILVEKDSAPSSYI----NKAYQTPLSIAIDVRLNDIACFIID 103
           +TPLH  V + K   ++ ++ E D      +    N++ +T L +A +    D+   ++ 
Sbjct: 18  DTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMK 77

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
            S   L  T+  +     H      N         LQ +D++++    N +L    D  +
Sbjct: 78  HSDSVLAGTKAKNGFDAFHIAAKNGN---------LQVLDVLIE---ANPELSFTFDSSK 125

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
              LH AA+ G+ ++V  LL+    LA     NG T LH AA NG   ++K LI K    
Sbjct: 126 TTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGM 185

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           +   D   ++ LH+A K  N  IV  ++++    +LIN  D  GNT LH+A     +++V
Sbjct: 186 VTRVDKKGQTALHMAVKGQNTEIVDVLMEAD--GSLINSADNKGNTPLHIAVRKNRAEIV 243

Query: 284 FTLSRHKSVNIRAKNRSARNNTTLEIDEMT------------------------------ 313
            T+ ++  V+  A N+S    T L+I E T                              
Sbjct: 244 QTVLKYCEVSRVAVNKSGE--TALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSG 301

Query: 314 -----RADVTEVQKHLTLKALKTAYAKRALSAEELQQ-KRQVSKEEGEKGKEMAQTLLVM 367
                +  V+E+   +  +  +T   +R     E+Q   ++V+K   E       +  ++
Sbjct: 302 SSRKLKETVSEIGHEVHTQLEQTGRTRR-----EIQGIAKRVNKMHTEGLNNAINSTTLV 356

Query: 368 ATLIATFLFTAAFTIPGGFKSDGLD 392
           A LIAT  F A F +PG +  D  D
Sbjct: 357 AILIATVAFAAIFNVPGQYTDDPKD 381

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 136/296 (45%), Gaps = 39/296 (13%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
           T LH AA+ GD A    +++   +VN+              D EG TP+H       + +
Sbjct: 508 TALHFAAQNGDEASTRLLLEKNASVNEV-------------DFEGRTPMHVACQHGQENI 554

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
           +R L+ +         K    PL  A       I   +  +   S+NA  L D  T LH 
Sbjct: 555 VRTLLRR-GVDVGLQGKDAWLPLHYAAWQGHLPIVKLLAKQPGVSVNAQTL-DGRTPLHL 612

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
              R +Y +++ +     ID+           +N      + PLH AA +G+    + LL
Sbjct: 613 AAQRGHYRVARIL-----IDLCSD--------VNICSLQAQTPLHVAAETGHTSTARLLL 659

Query: 184 E--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
              A K+        G T LHLAA+NG L  +KLLI +  D +  R   +++ LH+AA  
Sbjct: 660 HRGAGKEALTS---EGYTALHLAAQNGHLATVKLLIEEKADVM-ARGPLNQTALHLAAAR 715

Query: 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS-VNIRA 296
           G+  +V  ++ +    +LI+L D  G ++LHLAA G HS  V TL +H + +N+++
Sbjct: 716 GHSEVVEELVSA----DLIDLSDEQGLSALHLAAQGRHSQTVETLLKHGAHINLQS 767

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 48/330 (14%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASV----LETLFGMRDI----------- 46
           D+TPLHI+AR+G   IV ++++   + N A ++      L    G  D+           
Sbjct: 482 DQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASL 541

Query: 47  -----EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFI 101
                +G TPLH         V  +L++K ++P +   K+  TPL +A       +A  +
Sbjct: 542 SITTKKGFTPLHVAAKYGKLEVASLLLQKSASPDA-AGKSGLTPLHVAAHYDNQKVALLL 600

Query: 102 IDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161
           +D+ +    A +  +  T LH    +   D++ S+  L++        G + + + R   
Sbjct: 601 LDQGASPHAAAK--NGYTPLHIAAKKNQMDIATSL--LEY--------GADANAVTRQGI 648

Query: 162 HQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
                +H AA  G+V MV  LL   A+  L+ K   +G TPLHLAA+   + V ++L+N+
Sbjct: 649 AS---VHLAAQEGHVDMVSLLLSRNANVNLSNK---SGLTPLHLAAQEDRVNVAEVLVNQ 702

Query: 220 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLH 279
               ++ +     + LHV   +GN  IV+F+L   +    +N   +NG T+LH AA   H
Sbjct: 703 GAH-VDAQTKMGYTPLHVGCHYGNIKIVNFLL---QHSAKVNAKTKNGYTALHQAAQQGH 758

Query: 280 SDVVFTLSRHKSVNIRAKNRSARNNTTLEI 309
           + ++  L ++   N      +   NT L I
Sbjct: 759 THIINVLLQN---NASPNELTVNGNTALAI 785

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 135/297 (45%), Gaps = 35/297 (11%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D+TPLH AARIG   +V  +++     N A +A             G+TPLH    + H 
Sbjct: 470 DQTPLHCAARIGHTNMVKLLLENNANPNLATTA-------------GHTPLHIAAREGHV 516

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
             +  L+EK+++ +    K + TPL +A       +A  ++++ +    A +  + LT L
Sbjct: 517 ETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPL 573

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
           H  V   N D+             VK+L       +   W+   PLH AA    V++ + 
Sbjct: 574 HVAVHHNNLDI-------------VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 620

Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
           LL+     A      G TPLHLAA+ G  +++ LL++K  +   + + S  + LH+ A+ 
Sbjct: 621 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQE 678

Query: 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA-MGLHSDVVFTLSRHKSVNIRAK 297
           G+  +   ++K   M   ++   R G T LH+A+  G    V F L     VN + K
Sbjct: 679 GHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 732

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 85.5 bits (210), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 45/307 (14%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASV----LETLFGMRDI----------- 46
           D+TPLHI+AR+G   IV ++++   + N A ++      L    G  D+           
Sbjct: 499 DQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASL 558

Query: 47  -----EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFI 101
                +G TPLH         V  +L++K ++P +   K+  TPL +A       +A  +
Sbjct: 559 SITTKKGFTPLHVAAKYGKLEVANLLLQKSASPDA-AGKSGLTPLHVAAHYDNQKVALLL 617

Query: 102 IDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161
           +D+ +    A +  +  T LH    +   D++ ++  L++        G + + + R   
Sbjct: 618 LDQGASPHAAAK--NGYTPLHIAAKKNQMDIATTL--LEY--------GADANAVTRQGI 665

Query: 162 HQRNPLHYAAASGNVQMVQRLL--EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
                +H AA  G+V MV  LL   A+  L+ K   +G TPLHLAA+   + V ++L+N+
Sbjct: 666 AS---VHLAAQEGHVDMVSLLLGRNANVNLSNK---SGLTPLHLAAQEDRVNVAEVLVNQ 719

Query: 220 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLH 279
               ++ +     + LHV   +GN  IV+F+L   +    +N   +NG T LH AA   H
Sbjct: 720 G-AHVDAQTKMGYTPLHVGCHYGNIKIVNFLL---QHSAKVNAKTKNGYTPLHQAAQQGH 775

Query: 280 SDVVFTL 286
           + ++  L
Sbjct: 776 THIINVL 782

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 69/337 (20%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D+TPLH AARIG   +V  +++   + N A +A             G+TPLH    + H 
Sbjct: 466 DQTPLHCAARIGHTGMVKLLLENGASPNLATTA-------------GHTPLHTAAREGHV 512

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
                L+EK+++ +    K + TPL +A       +A  +++  +    A +  + LT L
Sbjct: 513 DTALALLEKEASQACMTKKGF-TPLHVAAKYGKVRLAELLLEHDAHPNAAGK--NGLTPL 569

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
           H  V   N D+             VK+L       +   W+   PLH AA    +++ + 
Sbjct: 570 HVAVHHNNLDI-------------VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARS 616

Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA------------------ 223
           LL+     A      G TPLHLAA+ G  +++ LL++K  +                   
Sbjct: 617 LLQYGGS-ANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVSQEG 675

Query: 224 --------------IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNT 269
                         ++       + LHVA+ +GN  +V F+L   + +  +N   + G +
Sbjct: 676 HVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL---QHQADVNAKTKLGYS 732

Query: 270 SLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTT 306
            LH AA   H+D+V  L +    N  + N  + N TT
Sbjct: 733 PLHQAAQQGHTDIVTLLLK----NGASPNEVSSNGTT 765

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 109/466 (23%), Positives = 193/466 (41%), Gaps = 78/466 (16%)

Query: 71  DSAPSSYI-------NKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
           +S+P S +       N A +T + I+    L DI  ++I  SS      R   ++   H 
Sbjct: 41  ESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHV 100

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
              R +            + I+ ++L    +L    D    +PL+ AA   ++++V  +L
Sbjct: 101 AAKRGH------------LGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAML 148

Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
           +     A     NG T LH A   G L+++K LI K    + ++D   ++ LH+A K  +
Sbjct: 149 DVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRS 208

Query: 244 WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSAR- 302
             +V  IL++     ++N  DR GNT+LH+A       +   L    ++ + A N     
Sbjct: 209 LEVVEEILQAD--YTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKET 266

Query: 303 ----------NNTTLEIDEMTRADVTEVQKHLTL-------KALKTAYA--KRALSAEEL 343
                     + + LEI+E   A V    KH          +ALK A +  K  + ++ L
Sbjct: 267 AMDLADKLQYSESALEINE---ALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLL 323

Query: 344 QQKRQ------VSKEEGEKGKEMAQ----TLLVMATLIATFLFTAAFTIPGGFKSDGLDE 393
           Q ++       ++KE  +  +E  Q    ++ V+A L A+  F A F +PG + ++G   
Sbjct: 324 QNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHV 383

Query: 394 GTTTLLHRATM--------TSTMAAAAIVFWSF----WRSKTESLLDTLPLAIGFTWIAL 441
           G   +  R           TS   + A+V        W ++ +     + +     W A 
Sbjct: 384 GQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQK--KVVSVVNKLMWAAC 441

Query: 442 ISMTLVFMTGLYAVLSNG-----LTIT-----IVVCAISSLLPFIF 477
                 F+   +AV+  G     +TIT     I+V  ++S+  F+F
Sbjct: 442 ACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVF 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 137/299 (45%), Gaps = 40/299 (13%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
           TPLH+AA +GD  I+  ++     VN              +D    TPLH  V  + +  
Sbjct: 43  TPLHVAAFLGDAEIIELLILSGARVN-------------AKDNMWLTPLHRAVASRSEEA 89

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
           +++L+ K SA  +  +K +QTPL +A   +    A  II   S S+N +      T LH 
Sbjct: 90  VQVLI-KHSADVNARDKNWQTPLHVAAANKAVKCAEVIIPLLS-SVNVSDRGGR-TALHH 146

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
             +  + +             MV +L      IN  D   R  LH+AA  G++ +V  L+
Sbjct: 147 AALNGHVE-------------MVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLI 193

Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN--KYPDAIEIRDNSDRSILHVAAKH 241
               ++  K D  G TPLH AA NG++ V+K L+N     D I +  N   + LH+A  +
Sbjct: 194 NHGAEVTCK-DKKGYTPLHAAASNGQINVVKHLLNLGVEIDEINVYGN---TALHIACYN 249

Query: 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL--SRHKSVNIRAKN 298
           G   +V+ ++   +    +N  + NG T LH AA   H  +   L  +    VNI++K+
Sbjct: 250 GQDAVVNELI---DYGANVNQPNNNGFTPLHFAAASTHGALCLELLVNNGADVNIQSKD 305

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
302143222	617	unnamed protein product [Vitis vinifera]	0.857	0.742	0.351	6e-64
147820412	624	hypothetical protein VITISV_004974 [Viti	0.838	0.717	0.317	2e-50
297739103	647	unnamed protein product [Vitis vinifera]	0.814	0.672	0.327	8e-50
225446910	777	PREDICTED: ankyrin repeat-containing pro	0.814	0.559	0.327	2e-49
359485365	781	PREDICTED: ankyrin repeat-containing pro	0.807	0.551	0.322	5e-49
224109440	577	predicted protein [Populus trichocarpa]	0.893	0.826	0.297	1e-47
359485593	756	PREDICTED: ankyrin repeat-containing pro	0.808	0.571	0.322	2e-47
297739105	781	unnamed protein product [Vitis vinifera]	0.808	0.553	0.318	7e-47
225446914	824	PREDICTED: ankyrin repeat-containing pro	0.808	0.524	0.318	9e-47
224117420	577	predicted protein [Populus trichocarpa]	0.893	0.826	0.299	1e-46

>gi|302143222|emb|CBI20517.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 273/512 (53%), Gaps = 54/512 (10%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           ETPLHIAAR G   +V  ++ +        +  + + L  MR++EGNTPLH  V   H  
Sbjct: 81  ETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGIQQVL-RMRNMEGNTPLHEAVRNGHHS 139

Query: 63  VIRILVE-KDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            + +LVE  DS     +N A ++PL +A+DVR ++I   I+  S+      R  D  T+L
Sbjct: 140 TVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTIL 199

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
           H  ++R +    K+M+          I+    +L+N  D   R+PLHYAAASG + +V  
Sbjct: 200 HRAILRADL---KTMKI---------IIQHMPELVNEKDSCGRSPLHYAAASGALALVDH 247

Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
           LL+         D N ATP H+AAENG L VLKL + +    +E+ +N  ++ILHVAA++
Sbjct: 248 LLQLKPSNGSFLDNNLATPAHMAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQN 307

Query: 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 301
           G+  +V +I     + +L+N  D +GNT LHLAA  LHS +V TL +  +++  A N+  
Sbjct: 308 GHLKVVRYIQNMFMVNDLLNETDEDGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAINKKG 367

Query: 302 R--------------NNTTLEIDEMTRADVT------------EVQKHLTLKALKTAYAK 335
                          +N   E  +  +A  T            E +K  T++ LK A AK
Sbjct: 368 ETVLDIARKFQLVSPSNEGNEGTDGNQAQATPNKTGCAGDEKIEAKKQRTIEILKAASAK 427

Query: 336 RALSAEELQQKRQVSKE--EGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDE 393
           +A   E + ++  +  E    ++ KEMA TL+VMATL+AT  FTAAFT+PGG +S+G  +
Sbjct: 428 QAKKLEGILEQEDLIIESIRDKRRKEMAGTLIVMATLVATVTFTAAFTLPGGIQSEGPHQ 487

Query: 394 GTTTLLHRA-----------TMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALI 442
           G   L  +A            MT++M AA I+F S W  + ++  +   +A+   W++L 
Sbjct: 488 GMAVLTRKAAFKAFIVTDTVAMTTSMTAAVILFTSSWNDE-KNKWNLHFIALQLLWMSLA 546

Query: 443 SMTLVFMTGLYAVLSNGLTITIVVCAISSLLP 474
           SM L F+TGL+ VLS+ + + I+VC I  L P
Sbjct: 547 SMGLAFLTGLFTVLSHSMELAIMVCFIGCLFP 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820412|emb|CAN63354.1| hypothetical protein VITISV_004974 [Vitis vinifera]

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 163/514 (31%), Positives = 260/514 (50%), Gaps = 66/514 (12%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           ETPLHIAAR G   +V  ++ +        +  + + L  MR++EGNTPLH  V   H  
Sbjct: 81  ETPLHIAARSGHVHVVKFLIDWATQSTDVEAGGIQQVLR-MRNMEGNTPLHEAVRNGHHS 139

Query: 63  VIRILVE-KDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            + +LVE  DS     +N A ++PL +A+DVR ++I   I+  S+      R  D  T+L
Sbjct: 140 TVLVLVEANDSDLLVSLNNAGESPLFMAVDVRASEIVKTILPNSNPYSLLHRSSDGQTIL 199

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
           H  ++R +         L+ + I+++ +    +L+N  D   R+PLHYAAASG + +V  
Sbjct: 200 HRAILRAD---------LKTMKIIIQHM---PELVNEKDSCGRSPLHYAAASGALALVDH 247

Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
           LL+         D N ATP H+AAENG L VLKL + +    +E+ +N  ++ILHVAA++
Sbjct: 248 LLQLKPSNGSFLDNNLATPAHMAAENGHLNVLKLFVKRCRYWVELLNNHHQNILHVAAQN 307

Query: 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 301
           G+  +V +I     + +L+N  D +GNT LHLAA  LHS +V TL +  +++  A N+  
Sbjct: 308 GHLKVVRYIQNMFMVNDLLNETDEDGNTPLHLAAAKLHSSIVSTLVQTGNMDTTAINKKG 367

Query: 302 R--------------NNTTLEIDEMTRADVT------------EVQKHLTLKALKTAYAK 335
                          +N   E  +  +A  T            E +K  T++ LK A AK
Sbjct: 368 ETVLDIARKFQLVSPSNEGNEGTDGNQAQATPNKTGCAGDEKIEAKKQRTIEILKAASAK 427

Query: 336 RALSAEELQQKRQVSKE--EGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDE 393
           +A   E + ++  +  E    ++ KEMA TL+  +              PGG +S+G  +
Sbjct: 428 QAKKLEGILEQEDLIIESIRDKRRKEMAGTLIRHSPF------------PGGIQSEGPHQ 475

Query: 394 GTTTLLHRA-----------TMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALI 442
           G   L  +A            MT++M AA I+F S W  + ++  +   +A+   W++L 
Sbjct: 476 GMAVLTRKAAFKAFIVTDTVAMTTSMTAAVILFTSSWNDE-KNKWNLHFIALQLLWMSLA 534

Query: 443 SMTLVFMTGLYAVLSNGLTITIVVCAISSLLPFI 476
           SM L F+TGL+ VLS+ + + I++       PF+
Sbjct: 535 SMGLAFLTGLFTVLSHSMELAIMLKGGMEEPPFL 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739103|emb|CBI28754.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 247/477 (51%), Gaps = 42/477 (8%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLE----TLFGMRDIEGNTPLHNVVTK 58
           +T LHIAAR  + + V  +M   P+   +G++  +E    +L G+ + EGNT LH  +  
Sbjct: 131 DTALHIAARKRNLSFVKIVMDSCPS--GSGASQDVEKAEPSLLGIVNKEGNTVLHEALIN 188

Query: 59  --KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
             K + V+ IL++ D   + Y NK  ++PL +A +     +   I +   E     R   
Sbjct: 189 RCKQEEVVEILIKTDPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRK 248

Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV 176
               +H  +M +N ++            + KIL     L+++ D   R PLH AA+ G +
Sbjct: 249 AKPAVHGAIMGKNKEM------------LEKILAMK--LVHQKDEDGRTPLHCAASIGYL 294

Query: 177 QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           + VQ LL+ S    Y+ D +G  P+H+A+  G + ++K L+    D+IE+     ++ILH
Sbjct: 295 EGVQMLLDQSNLDPYQMDSDGFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGQNILH 354

Query: 237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296
           VAAK+G  N+V+F+LK   +EN IN  D+ GNT LHLA M  H  VV +L+  K V++  
Sbjct: 355 VAAKYGKDNVVNFVLKEERLENFINEKDKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNL 414

Query: 297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG-- 354
            N   R  T L I    +   T   + L   ALK+A A+ A +++    +R     E   
Sbjct: 415 VND--RGQTALNIVLPVKHPPT-FHQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPK 471

Query: 355 -EKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHR-----------A 402
            +K K+   TLL+++TL+AT  F A FT+PGG+ S   + G   LL R            
Sbjct: 472 MDKYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSDPNVGMAALLMRNMFQMFVICNTT 531

Query: 403 TMTSTMAAAAIVFWSFWRSKTESLLDT-LPLAIGFTWIALISMTLVFMTGLYAVLSN 458
            M +++ AA I+ W+  +    +L+DT L  A+ F  +AL +M+L FM G+Y V+SN
Sbjct: 532 AMYTSILAAIILIWA--QLGDLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446910|ref|XP_002266647.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 247/477 (51%), Gaps = 42/477 (8%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLE----TLFGMRDIEGNTPLHNVVTK 58
           +T LHIAAR  + + V  +M   P+   +G++  +E    +L G+ + EGNT LH  +  
Sbjct: 261 DTALHIAARKRNLSFVKIVMDSCPS--GSGASQDVEKAEPSLLGIVNKEGNTVLHEALIN 318

Query: 59  --KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
             K + V+ IL++ D   + Y NK  ++PL +A +     +   I +   E     R   
Sbjct: 319 RCKQEEVVEILIKTDPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNRDRK 378

Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV 176
               +H  +M +N ++            + KIL     L+++ D   R PLH AA+ G +
Sbjct: 379 AKPAVHGAIMGKNKEM------------LEKILAMK--LVHQKDEDGRTPLHCAASIGYL 424

Query: 177 QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           + VQ LL+ S    Y+ D +G  P+H+A+  G + ++K L+    D+IE+     ++ILH
Sbjct: 425 EGVQMLLDQSNLDPYQMDSDGFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGQNILH 484

Query: 237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296
           VAAK+G  N+V+F+LK   +EN IN  D+ GNT LHLA M  H  VV +L+  K V++  
Sbjct: 485 VAAKYGKDNVVNFVLKEERLENFINEKDKGGNTPLHLATMHRHPKVVSSLTWDKRVDVNL 544

Query: 297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG-- 354
            N   R  T L I    +   T   + L   ALK+A A+ A +++    +R     E   
Sbjct: 545 VND--RGQTALNIVLPVKHPPT-FHQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPK 601

Query: 355 -EKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHR-----------A 402
            +K K+   TLL+++TL+AT  F A FT+PGG+ S   + G   LL R            
Sbjct: 602 MDKYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSDPNVGMAALLMRNMFQMFVICNTT 661

Query: 403 TMTSTMAAAAIVFWSFWRSKTESLLDT-LPLAIGFTWIALISMTLVFMTGLYAVLSN 458
            M +++ AA I+ W+  +    +L+DT L  A+ F  +AL +M+L FM G+Y V+SN
Sbjct: 662 AMYTSILAAIILIWA--QLGDLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 716

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485365|ref|XP_003633264.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 250/477 (52%), Gaps = 46/477 (9%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLE----TLFGMRDIEGNTPLHNVVTK 58
           +T LHIAAR  + + V  +M   P+   +G++  +E    +L G+ + EGNT LH  +  
Sbjct: 269 DTALHIAARKRNLSFVKIVMDSFPS--GSGASQDVEKAEPSLLGIVNKEGNTVLHEALIN 326

Query: 59  --KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
             K + V+ IL++ D   + Y NK  ++PL +A +     +   I +   E     R+ +
Sbjct: 327 RCKQEEVVEILIKADPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEE----RMKN 382

Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV 176
               +H  +M +N ++            + KIL     L+++ D   R PLH AA+ G +
Sbjct: 383 RDRKVHGAIMGKNKEM------------LEKILAMK--LVHQKDKDGRTPLHCAASIGYL 428

Query: 177 QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           + VQ LL+ S    Y+ D +G  P+H+A+  G + ++K L+    D+IE+      +ILH
Sbjct: 429 EGVQMLLDQSNLDPYQTDSDGFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGENILH 488

Query: 237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296
           VAAK+G  N+V+F+LK   +EN IN  D  GNT LHLA M  H  VV +L+  K V++  
Sbjct: 489 VAAKYGKDNVVNFVLKEERLENFINEKDNGGNTPLHLATMHRHPKVVSSLTWDKRVDVNL 548

Query: 297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG-- 354
            N   R  T L++  ++    T   + L   ALK+A A+ A +++    +R+    E   
Sbjct: 549 VND--RGQTALDV-VLSVKHPTTFDQALIWTALKSAGARPAGNSKFPPNRRRKQYSESPN 605

Query: 355 -EKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHR-----------A 402
            +K K+   TLL+++TL+AT  F A FT+PGG+ S   + G   LL R            
Sbjct: 606 TDKYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSDPNVGMAALLMRNMFHMFVICNTT 665

Query: 403 TMTSTMAAAAIVFWSFWRSKTESLLDT-LPLAIGFTWIALISMTLVFMTGLYAVLSN 458
            M +++ AA I+ W+  +    +++DT L  A+ F  +AL +M+L FM G+Y V+SN
Sbjct: 666 AMYTSILAAIILIWA--QLGDLNVMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109440|ref|XP_002333254.1| predicted protein [Populus trichocarpa] gi|222835818|gb|EEE74253.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 156/525 (29%), Positives = 259/525 (49%), Gaps = 48/525 (9%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGM---RDIEGNTPLHNVVTKK 59
           ++PLH+AAR G  +IV  ++K + A  +  + +     F +    + E NT LH  V   
Sbjct: 70  DSPLHVAARCGHFSIVDFLVKEILAAKRISTENGKTGKFDILRQGNNENNTVLHEAVRNG 129

Query: 60  HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT 119
           +  V+++L+  D+  + + N A ++PL +A      ++   I+  +  S +     +  T
Sbjct: 130 NMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKNLLNQILISTPASAHGG--SEGQT 187

Query: 120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
            LH  V+ ++ D            IM  +L     LI   D H R  LH+AA+ G+ + V
Sbjct: 188 ALHAAVIERHSD------------IMEILLRAKPHLITEADHHGRTALHHAASLGDRRAV 235

Query: 180 QRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239
           +RLLE  +  AY  D NG +PLH+AA NG   V++ +I+  PD+ E+ D + RS+LH A 
Sbjct: 236 ERLLEFDECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDLNGRSVLHFAV 295

Query: 240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
             G  N+V  +++  E++ LIN  D  GNT LHLAA+   + ++  L   + V+ RA+N 
Sbjct: 296 LSGKVNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWDERVDHRARNE 355

Query: 300 SARNNTTLEIDE-------MTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKE 352
           + +  +  +ID        + R ++ E      +        K+     + +   ++   
Sbjct: 356 TGQ--SVFDIDGSIRESCFIYRCNIIECVWRKLIPVSNGIIGKKNPPCTDQEAIARI--- 410

Query: 353 EGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSD-GLDEGTTTLLHRA--------- 402
             +  K M  TLL++ATLIAT  F AAFT+PGGF +D GL +G   L             
Sbjct: 411 --QTYKRMGNTLLMVATLIATVTFAAAFTLPGGFNNDLGLKQGVALLESSKHLRWFVFSD 468

Query: 403 --TMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGL 460
              MTS++ AA I+FW    S  ES +  L  A   T IAL S  + F++G+ AVL +  
Sbjct: 469 AIAMTSSIIAACIIFWGA-VSNDESYVYYLASATVLTCIALQSAGIAFLSGIVAVLPD-- 525

Query: 461 TITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYY 505
                V +++ ++   F+V    F++ L +   V+ +C+    Y+
Sbjct: 526 --QPFVDSVTYIVGIAFHVINFLFLLQLLRVFLVSEICQFLIFYF 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485593|ref|XP_002266894.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 245/477 (51%), Gaps = 45/477 (9%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLE----TLFGMRDIEGNTPLHNVVTK 58
           +T LHIAAR  + + V  +M   P+   +G++  +E    +L G+ + EGNT LH  +  
Sbjct: 243 DTALHIAARKRNLSFVKIVMDSFPS--GSGASQDVEKAEPSLLGIVNKEGNTVLHEALIN 300

Query: 59  --KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
             K + V+ IL++ D   + Y NK  ++PL +A +     +   I +   E     R   
Sbjct: 301 RCKQEEVVEILIKADPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNR--- 357

Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV 176
           +   +H  +M +N ++            + KIL     L+ + D   R PLH AA+ G +
Sbjct: 358 DRKAVHGAIMGKNKEM------------LEKILAMK--LVQQKDKDGRTPLHCAASIGYL 403

Query: 177 QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           + VQ LL+ S    Y+   +G  P+H+A+  G + ++K L+    D+IE+      +ILH
Sbjct: 404 EGVQILLDQSNLDPYQTASDGFCPIHVASMRGNVDIVKKLLQVSSDSIELLSKRGENILH 463

Query: 237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296
           VAAK+G  N+V+F+LK   +EN IN  D  GNT LHLA M  H  VV +L+  K V++  
Sbjct: 464 VAAKYGKDNVVNFVLKEERLENFINEKDNGGNTPLHLATMHRHPKVVSSLTWDKRVDVNL 523

Query: 297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG-- 354
            N   R  T L+   ++    T   + L   ALK+A A+ A +++    +R     E   
Sbjct: 524 VND--RGQTALDA-VLSVKHPTTFDQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPK 580

Query: 355 -EKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHR-----------A 402
            +K K+   TLL+++TL+AT  F A FT+PGG+ S   + G   LL R            
Sbjct: 581 MDKYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSDPNVGMAALLMRNMFHMFVICNTT 640

Query: 403 TMTSTMAAAAIVFWSFWRSKTESLLDT-LPLAIGFTWIALISMTLVFMTGLYAVLSN 458
            M +++ AA I+ W+  +    +L+DT L  A+ F  +AL +M+L FM G+Y V+SN
Sbjct: 641 AMYTSILAAIILIWA--QLGDLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739105|emb|CBI28756.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 152/477 (31%), Positives = 247/477 (51%), Gaps = 45/477 (9%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLE----TLFGMRDIEGNTPLHNVVTK 58
           +T LHIAAR  + + V  +M   P+    G++  +E    +L G+ + EGNT LH  +  
Sbjct: 268 DTALHIAARKRNLSFVKIVMDSCPS--GGGASQDVEKAEPSLLGIGNKEGNTVLHEALIN 325

Query: 59  --KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
             K + V+ IL++ D   + Y NK  ++PL +A +     +   I +   E     R   
Sbjct: 326 RCKQEEVVEILIKADPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNR--- 382

Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV 176
           +   +H  +M +N ++            + KIL     L+++ D   R PLH AA+ G +
Sbjct: 383 DRKAVHGAIMGKNKEM------------LEKILAMR--LVHQKDEDGRTPLHCAASIGYL 428

Query: 177 QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           + VQ LL+ S    Y+ D +G  P+H+A+  G + ++K L+    D++E+      +ILH
Sbjct: 429 EGVQMLLDQSNLDPYRTDSHGFCPIHVASMRGNVDIVKKLLQVSSDSVELLSKLGENILH 488

Query: 237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296
           VAA++G  N+V+F+LK   +EN IN  D+ G T LHLA M  H  VV +L+  K V++  
Sbjct: 489 VAARYGKDNVVNFVLKEERLENFINEKDKAGYTPLHLATMHRHPKVVSSLTWDKRVDVNL 548

Query: 297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG-- 354
            N   +  T L+I  ++    T   + L   ALK+A A+ A +++    +R     E   
Sbjct: 549 VNDLGQ--TALDI-VLSVEPPTTFDQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPK 605

Query: 355 -EKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHR-----------A 402
            +K K+   TLL+++TL+AT  F A FT+PGG+ S   + G   LL R            
Sbjct: 606 MDKYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSDPNVGMAALLMRNMFQMFVICNTT 665

Query: 403 TMTSTMAAAAIVFWSFWRSKTESLLDT-LPLAIGFTWIALISMTLVFMTGLYAVLSN 458
            M +++ AA I+ W+  +    +L+DT L  A+ F  +AL +M+L FM G+Y V+SN
Sbjct: 666 AMYTSILAAIILIWA--QLGDLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446914|ref|XP_002266727.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  194 bits (493), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 152/477 (31%), Positives = 247/477 (51%), Gaps = 45/477 (9%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLE----TLFGMRDIEGNTPLHNVVTK 58
           +T LHIAAR  + + V  +M   P+    G++  +E    +L G+ + EGNT LH  +  
Sbjct: 311 DTALHIAARKRNLSFVKIVMDSCPS--GGGASQDVEKAEPSLLGIGNKEGNTVLHEALIN 368

Query: 59  --KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
             K + V+ IL++ D   + Y NK  ++PL +A +     +   I +   E     R   
Sbjct: 369 RCKQEEVVEILIKADPQVAYYPNKEGKSPLYLAAESHYFHVVEAIGNSEVEERMKNR--- 425

Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV 176
           +   +H  +M +N ++            + KIL     L+++ D   R PLH AA+ G +
Sbjct: 426 DRKAVHGAIMGKNKEM------------LEKILAMR--LVHQKDEDGRTPLHCAASIGYL 471

Query: 177 QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           + VQ LL+ S    Y+ D +G  P+H+A+  G + ++K L+    D++E+      +ILH
Sbjct: 472 EGVQMLLDQSNLDPYRTDSHGFCPIHVASMRGNVDIVKKLLQVSSDSVELLSKLGENILH 531

Query: 237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296
           VAA++G  N+V+F+LK   +EN IN  D+ G T LHLA M  H  VV +L+  K V++  
Sbjct: 532 VAARYGKDNVVNFVLKEERLENFINEKDKAGYTPLHLATMHRHPKVVSSLTWDKRVDVNL 591

Query: 297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG-- 354
            N   +  T L+I  ++    T   + L   ALK+A A+ A +++    +R     E   
Sbjct: 592 VNDLGQ--TALDI-VLSVEPPTTFDQALIWTALKSAGARPAGNSKFPPNRRCKQYSESPK 648

Query: 355 -EKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHR-----------A 402
            +K K+   TLL+++TL+AT  F A FT+PGG+ S   + G   LL R            
Sbjct: 649 MDKYKDRVNTLLLVSTLVATVTFAAGFTMPGGYNSSDPNVGMAALLMRNMFQMFVICNTT 708

Query: 403 TMTSTMAAAAIVFWSFWRSKTESLLDT-LPLAIGFTWIALISMTLVFMTGLYAVLSN 458
            M +++ AA I+ W+  +    +L+DT L  A+ F  +AL +M+L FM G+Y V+SN
Sbjct: 709 AMYTSILAAIILIWA--QLGDLNLMDTALRFALPFLGLALTAMSLGFMAGVYLVVSN 763

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117420|ref|XP_002317570.1| predicted protein [Populus trichocarpa] gi|222860635|gb|EEE98182.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 157/525 (29%), Positives = 256/525 (48%), Gaps = 48/525 (9%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGM---RDIEGNTPLHNVVTKK 59
           ++PLH+AAR G  +IV  ++K   +  +  + +     F +    + E NT LH  V   
Sbjct: 70  DSPLHVAARCGHFSIVDFLVKENLSAKRISTENGKTGKFDILRQGNNENNTVLHEAVRNG 129

Query: 60  HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT 119
           +  V+++L+  D+  + + N A ++PL +A      DI   I+  +  S +     +  T
Sbjct: 130 NMSVVKLLLRVDTKLACFENYAGESPLFLAAREGKKDILNQILISTPASAHGG--SEGQT 187

Query: 120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
            LH  V+ ++ D            IM  +L     LI   D H R  LH+AA+ G+ + V
Sbjct: 188 ALHAAVIERHSD------------IMEILLRAKPHLITEADHHGRTALHHAASLGDRRAV 235

Query: 180 QRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239
           +RLLE  +  AY  D NG +PLH+AA NG   V++ +I+  PD+ E+ D + RS+LH A 
Sbjct: 236 ERLLEFDECTAYVLDKNGHSPLHVAASNGHADVIERIIHYCPDSGELLDLNGRSVLHFAV 295

Query: 240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
             G  N+V  +++  E++ LIN  D  GNT LHLAA+   + ++  L   + V+ RA+N 
Sbjct: 296 LSGKVNVVRCVVEIAELQWLINQADNGGNTPLHLAAIERQTRILRCLIWDERVDHRARNE 355

Query: 300 SARNNTTLEIDE-------MTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKE 352
           + +  +  +ID        + R ++ E      +        K+     + +   ++   
Sbjct: 356 TGQ--SVFDIDGSIRESCFIYRCNIIECVWRKLIPVSNGIIGKKNPPCADQEAIARI--- 410

Query: 353 EGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSD-GLDEGTTTLLHRA--------- 402
             +  K M  TLL++ATLIAT  F AAFT+PGGF +D GL +G   L             
Sbjct: 411 --QTYKRMGNTLLMVATLIATVTFAAAFTLPGGFNNDLGLKQGVALLESSKHLRWFVFSD 468

Query: 403 --TMTSTMAAAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGL 460
              MTS++ AA I+FW    S  ES +  L  A   T IAL S  + F++G+ AVL +  
Sbjct: 469 SIAMTSSIIAACIIFWGAV-SNDESYVYYLASATVLTCIALQSAGIAFLSGIVAVLPDQP 527

Query: 461 TITIVVCAISSLLPFIFYVFAPFFMIMLCKSVRVTIVCKLDAHYY 505
            +  V+     ++   F V    F++ L +   V+ +C+    Y+
Sbjct: 528 FVDSVI----YIVGIAFNVSDFLFLLQLVRIFLVSEICQFLIFYF 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.859	0.677	0.278	4.3e-36
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.863	0.748	0.266	9.4e-33
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.868	0.723	0.250	1.9e-26
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.882	0.689	0.237	1.7e-23
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.726	0.678	0.250	8.3e-23
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.878	0.675	0.236	1.1e-22
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.578	0.569	0.291	6.7e-19
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.550	0.561	0.270	5.4e-18
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.889	0.708	0.222	4e-17
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.374	0.349	0.291	6.2e-17

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 4.3e-36, P = 4.3e-36
 Identities = 136/489 (27%), Positives = 220/489 (44%)

Query:     1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
             M E  LH+AA  G  A+V  ++ ++  ++      V + ++  +D   +  LH  + +KH
Sbjct:   164 MGEVALHVAAGAGHLAVVEALVSFIKDIS-CNKPGVAKKIYFAKDRHQDNALHVSLKRKH 222

Query:    61 KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120
              +V   LV  + + S   N    +PL +A++    D+A  +   S+   ++T      TL
Sbjct:   223 LKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHSNNGSSSTS-----TL 277

Query:   121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQ 180
                   R    +  +M+  +  DI+V IL  +  LIN  D   R  L + A+ G  +   
Sbjct:   278 ASKIGGRSI--VHGAMKARRK-DILVAILSEDASLINFRD-EGRTCLSFGASLGYYEGFC 333

Query:   181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
              LL+ +    Y  D +G+ P+H+A + G +K+LK ++ + PDA+E+ D  ++++LHVAAK
Sbjct:   334 YLLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAK 393

Query:   241 HGNWNIVSFIL---KSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAK 297
             +G   ++ FIL   K    E LIN  D NGNT LHLA    H  VV  L+    V+++  
Sbjct:   394 NGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTL 453

Query:   298 NRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKG 357
             N      T L+I E          + LT  AL +A A R    + +         +G K 
Sbjct:   454 NHDGV--TALDIAEKNMDSSYTFFERLTWMALISAGAPRG--PKLILSTPVTQNSDGGKY 509

Query:   358 KEMAQTLLVMXXXXXXXXXXXXXXXPGGFKSDGLDEGTTTLLHRXXXXXXXXXXXIVFWS 417
             K+   TLL++               PGG+     + G  TL  +           +  + 
Sbjct:   510 KDRVNTLLLVATLVATMTFTAGFTLPGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYC 569

Query:   418 --------FWRSKTE-SLL-DTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITIVVC 467
                      W    + SL+     LA+    +AL SM++ FM G YA +  GL I  V+ 
Sbjct:   570 SIITIVALIWAQLGDLSLIMKAFNLALPLLGLALTSMSIAFMAGTYAAVY-GLLIVGVLT 628

Query:   468 AISSLLPFI 476
               SS L F+
Sbjct:   629 --SSYLDFL 635

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 9.4e-33, P = 9.4e-33
 Identities = 133/500 (26%), Positives = 227/500 (45%)

Query:     1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
             M ET LH+AAR G   IV  +++++        +S  +     +   G+T LH  +  KH
Sbjct:   105 MGETTLHVAARAGSLNIVEILVRFIT------ESSSYDAFIAAKSKNGDTALHAALKGKH 158

Query:    61 KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE-SLNATRLPDELT 119
               V   LV      S   N    +PL +A++   +++   +++ SS  S+ A+    + +
Sbjct:   159 VEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPSILASMFSGK-S 217

Query:   120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
             ++H   M+ N             DI+  +L  +  LI   +   R  L Y A+ G  + +
Sbjct:   218 VIHA-AMKANRR-----------DILGIVLRQDPGLIELRNEEGRTCLSYGASMGCYEGI 265

Query:   180 QRLL----EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSIL 235
             + +L    +A+  L Y  D +G TP+H+AA+ G ++++K  +   PD+ E+ +N  ++I 
Sbjct:   266 RYILAEFDKAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIF 325

Query:   236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR 295
             HVAA  G   +V ++LK  E + ++N  D NGNT LHLA    +  VV  L+ +  +N+R
Sbjct:   326 HVAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLHLATKHRYPIVVNMLTWNDGINLR 385

Query:   296 AKNRSARNNTTLEIDEMTRADVTEV-QKHLTLKALKTAYAKRALSAEELQQKRQVSKEEG 354
             A N      T L+I E  + +   V  K L   AL +A A    +   L    Q SK+  
Sbjct:   386 ALNNEGF--TALDIAETMKDNNAYVLYKRLIWMALVSAGAPHGPNLIPLTVS-QSSKQSP 442

Query:   355 EKGKEMAQTLLVMXXXXXXXXXXXXXXXPGGFKSDGLDEGTTTLLHRXXXXXXXXXXXIV 414
             E+ K+   TL+V                PGG+ S     G   L+++           I 
Sbjct:   443 ERYKDSVNTLMVTATLVATVTFAAGLTLPGGYMSSAPHLGMAALVNKLNFKVFLLLNNIA 502

Query:   415 FWS--------FWRSKTESLLD--TLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITI 464
               +         W    ++LL      LA+     A++SM +  + GL  V+S+   ++ 
Sbjct:   503 MCTSVVTVMALIWAQLGDALLTKKAFRLALPLLLTAVVSMMMASVAGLTLVVSDLPWLSH 562

Query:   465 VVCAI-SSLLPFIFYVFAPF 483
             +V AI S+ L F+  +  P+
Sbjct:   563 LVLAIDSAFLVFLMLLIIPY 582

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 127/507 (25%), Positives = 216/507 (42%)

Query:     2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLE--TLFGMRDIEGNTPLHNVVTKK 59
             D+ PLH AA  G  A+V   +  V  ++   S    E   L+ M+DI+GNT LH  +   
Sbjct:   105 DQIPLHAAAAAGRLAVVEAFVARVNEISDGLSEEERERVNLYAMKDIDGNTALHLALKGG 164

Query:    60 HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLN-ATRLPDEL 118
             H +    LV+ +   S   N    +PL  AI      +   ++    ++ N A++L    
Sbjct:   165 HLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSLTLVEAMMYVPGQTCNLASKLEGRK 224

Query:   119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM 178
             +L+H  +  +N D+         +D+   IL  +  L+N  D   R  L  AA  G  + 
Sbjct:   225 SLVHAALKAKNSDI---------LDV---ILSEDPSLVNERDEEGRTCLSVAAYVGYYKG 272

Query:   179 VQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238
             V  LL  S    ++ D +G+ P+H+A E G +K+   L+   PD+  + +   ++ILH+A
Sbjct:   273 VVNLLHRSTSNVFECDDDGSYPIHMAVEKGRVKIFLKLLKCCPDSQYLLNKQGQNILHIA 332

Query:   239 AKHGNWNIVSF-ILKSPEM--ENLINLIDRNGNTSLHLAAMGLHSDVV-----FTLSRHK 290
             AK G        ++K+ ++   +LI   D +GNT LHLA +      V     FTL  H 
Sbjct:   333 AKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNTPLHLATLTWRPRTVNILNKFTLGNH- 391

Query:   291 SVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA---LSAEELQQKR 347
              ++IR K+      + L+I E         ++ +TL  L    + R    +    +  K 
Sbjct:   392 -LHIRNKD----GLSALDIAESNLQSNYVFRERMTLMVLLCTCSPRGFKMIPTSGITLKS 446

Query:   348 QVSKEEGEKGKEMAQTLLVMXXXXXXXXXXXXXXXPGGFKSD----GL----DEGTTTLL 399
             +  K  G K K+    LL++               PGGF S     G+    D+   ++ 
Sbjct:   447 RSEKVAGNKYKDSINVLLLVATLVATVAFAAGIAIPGGFSSSTPKRGIAILDDDDFLSIF 506

Query:   400 HRXXXXXXXXXXXIVFWSFWRSKTESLL--DTLPLAIGFTWIALISMTLVFMTGLYAVLS 457
                           +    W    + +L   T  LA+   +++L+SM+  F  G+ A   
Sbjct:   507 LVFNTLAMQSSVLAIVALIWAQLGDPVLVHKTFHLALPALFVSLVSMSSAFFCGVVATTK 566

Query:   458 NGLTITIVVCAISSLLPFIF-YVFAPF 483
             +   +   +  IS +  F+  Y+ AP+
Sbjct:   567 HNPWLFDSIIFISIIFLFVVAYLLAPY 593

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 120/505 (23%), Positives = 218/505 (43%)

Query:     2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETL--FGMRDIEGNTPLHNVVTKK 59
             D+ PLH+AAR+G  A+V +++  V   +   +    E L  + ++DI G+T L N+  K 
Sbjct:   153 DQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILNPYLLKDINGDTAL-NLALKG 211

Query:    60 HKRVIRILVEKDSAPSSYIN-KAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL 118
             H   + + +   +  +S++  K   +PL +A++ +   +   ++           L    
Sbjct:   212 HYTEVALCLVNANRQASFLACKDGISPLYLAVEAKDASLVKAMLGNDGPQRKNLNLEGRK 271

Query:   119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM 178
              L H  +   + D+         +D+   IL     L++  D   R  L + A+ G  + 
Sbjct:   272 YLAHAALNSLSTDI---------LDV---ILNEYPSLVDERDEEGRTCLSFGASIGYHKG 319

Query:   179 VQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238
             V  LL  S++  +  D +G+ P+HLA E G +KV+K +  + P +  + +   +++LH+A
Sbjct:   320 VCNLLNRSRKGVFVCDDDGSYPIHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLHIA 379

Query:   239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
             A+ G + I+  +    ++ +L N  D +GNT LHLA +      V  L   K++ I+  N
Sbjct:   380 AESGKFRILRHLTAHEQINHLANEKDVDGNTPLHLATIYWRPRAVRELGGKKNLLIQNNN 439

Query:   299 RSARNNTTLEIDEMTRADVTEVQKHLTLKAL-KTAYAKRALSAEELQQKRQVSKEEGEKG 357
                     L+I E         ++ LTL AL +  +      A  + Q R +  + G K 
Sbjct:   440 ----GLVALDIAESKLQPHYIFRERLTLLALVQLHFQNDPRCAHTMIQTRPIMPQGGNK- 494

Query:   358 KEMAQTLLVMXXXXXXXXXXXXXXXPGGFKSDGLDEGTTTLLHRXXXXXXXXXXXIVFWS 417
              +    LLV+               PGGFK    + G   L+             +   +
Sbjct:   495 -DYINALLVVAALITTVTFTSGFTIPGGFKDSTPNVGMANLITNPRLILFLIFDILALET 553

Query:   418 FWRSKTESLLDTL--P-LAIGFTWIALISM--TLVFMTGLY---AVLSNGLT---ITIVV 466
              + +    +L  L  P L      +A+IS+   + FMT  +    V++ G     + ++ 
Sbjct:   554 SFLAVVSLILAQLGDPTLYQSSVRVAMISLYFAMYFMTLAFFFVMVIAAGNVRWLVYVIF 613

Query:   467 CAISSLLPFIFYVFAPFFMIMLCKS 491
             C I S+L   F  F P  ++  C S
Sbjct:   614 CLIFSILTLAFSRFMPHLLLHYCGS 638

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 8.3e-23, P = 8.3e-23
 Identities = 100/399 (25%), Positives = 182/399 (45%)

Query:     2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETL--FGMRDIEGNTPLHNVVTKK 59
             D+ PLH+AA  G  AIV  ++  V   +   +    E L  + +RD  GNT LH  +  +
Sbjct:   149 DQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYVLRDKYGNTALHLAIEGR 208

Query:    60 HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT 119
             +  +   LV ++   S   N    + L +A++    D+   ++ +  ++     L    +
Sbjct:   209 YMEMAASLVNENQNASFLENNEGISSLYMAVEA--GDVT--LVKEILKTAGNNDLEGRNS 264

Query:   120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
              L   +  + + +  ++   + I ++  IL     L +  D   R  L +AA+ G  + V
Sbjct:   265 NLDSKLEGRKHLVHVALN-ARSIGVLDVILNEYPSLEDERDEEGRTCLSFAASIGFYKGV 323

Query:   180 QRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239
               LL+ S +  Y  D +G+ P+H AAENG ++++K ++ + P +  + +   +++LH+AA
Sbjct:   324 CNLLDRSTKNVYVCDEDGSFPIHTAAENGHIRIVKEILKRCPHSKHMLNKLGQNVLHIAA 383

Query:   240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
             K G  N+V  +++S + ++L    D +GNT LHLA +      + TL+    + ++ +N 
Sbjct:   384 KIGEHNLVKSLMRSDDTKHLGVGQDVDGNTPLHLAVLNWRYRSIRTLASDVKI-LQLRND 442

Query:   300 SARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEEGEKGKE 359
             +    T   I E          + LTL  L  A+A R   + +   K     +  EK ++
Sbjct:   443 NGL--TARGIAESVLKPNYIFHERLTLAFLLDAHAFRGCGSVKSLTKPSEPLDH-EKSRD 499

Query:   360 MAQTLLVMXXXXXXXXXXXXXXXPGGFKSDGLDEGTTTL 398
                TLL++               PGGF S     G  TL
Sbjct:   500 YVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATL 538

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 119/504 (23%), Positives = 210/504 (41%)

Query:     3 ETPLHIAARIGDHAIVSEIMKYVP--AVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
             +TPLH+AA  G   IV   +  V   +       S     + ++D +GNT L+  +  ++
Sbjct:   167 QTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYVLKDKDGNTALYYAIEGRY 226

Query:    61 KRVIRILVEKDSAPSSYINKAYQTPLSIAI---DVRLNDIACFIID----KSSESLNATR 113
               +   LV  +       NK   + L +AI   DV L      II     K  +S   ++
Sbjct:   227 FEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESK 286

Query:   114 LPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAAS 173
             L  + +L H  ++ Q+            +D+   IL     L++  D +    L  AA  
Sbjct:   287 LQGQKSLAHVALVTQS--------IAGVLDV---ILDEYPSLMDERDINGWTCLSLAAHI 335

Query:   174 GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS 233
             G  + V  LLE S +  Y  D +G+ P+H AAE G   +++  I + P +  + +   ++
Sbjct:   336 GYYEGVCNLLERSTKGVYVCDQDGSFPIHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQN 395

Query:   234 ILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN 293
             +LH+AAK+G + I + ++ + + E+L    D +GNT LHLA M  H   +  L+R   + 
Sbjct:   396 VLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPLHLAVMNWHFKSITWLARSSKI- 454

Query:   294 IRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKRQVSKEE 353
             ++ +N++      +   E+    +   Q+  TL  L  A   R   +     K  V  + 
Sbjct:   455 LKVRNKNGLRARDIAEREVKPHYI--FQERWTLALLLYAIHSRGFESVHSLTKPSVPLDP 512

Query:   354 GEKGKEMAQTLLVMXXXXXXXXXXXXXXXPGGFKSDGLDEGTTTLLHRXXXXXXXXXXXI 413
              +  ++   TLL++               PGGF S     G  TL              +
Sbjct:   513 -KNNRDYVNTLLLVAALVATMTFAAGFTIPGGFNSSAPHLGRATLATNPTLFIFLVLDIL 571

Query:   414 VFWS--------FWRSKTESLL--DTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTIT 463
                S         W    + +L   +L +A+     AL+ M L F+ G+   + +   + 
Sbjct:   572 AMQSSVATIGILIWAQLGDPVLIRSSLHVALPLLLFALLCMPLAFLFGVVTAVGHVKWLV 631

Query:   464 IVVCAISSLL-PFIFYVFAPFFMI 486
             +++C IS L   +  +V  P  M+
Sbjct:   632 VIICIISVLFFSWAIFVLGPHVML 655

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 6.7e-19, P = 6.7e-19
 Identities = 98/336 (29%), Positives = 158/336 (47%)

Query:    36 VLETLFGMRDIEGNTPLHNVVTKKHK-RVIRILVE-KDSAPSSYINKAYQT-PLSIAIDV 92
             +++ L G RD   +T LH+ V   +K RV+ IL + ++S  +  + K  Q+   ++ +  
Sbjct:    18 MMKQLTGKRD---DTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVAA 74

Query:    93 RLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTN 152
                D+   I+    E +N      +L L+     R  +D          +D++  +   +
Sbjct:    75 EYGDVE--IV---KEMINCY----DLALVEIKA-RNGFDAFHIAAKQGDLDVLKVLAEAH 124

Query:   153 KDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKV 212
              +L   +D      LH AA  G+ ++V  LLE    LA     NG T LH A+ NG +KV
Sbjct:   125 SELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKV 184

Query:   213 LKLLINKYPDAIEIR-DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSL 271
             +K L+   P AI IR D   ++ LH+A K  N  +V  ++K+      IN+ D  GNT+L
Sbjct:   185 IKALLASEP-AIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSS--INIADTKGNTAL 241

Query:   272 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDE-MTRADVTEV-QKHLTLKAL 329
             H+AA    S +V  L  +   + +A NRS    T L+  E +   +V  + QKH  + + 
Sbjct:   242 HIAARKGRSQIVKLLLANNMTDTKAVNRSGE--TALDTAEKIGNPEVALILQKH-GVPSA 298

Query:   330 KTAYAKRALSAEELQQKRQVSKEEGEKGKEMAQTLL 365
             KT        A EL+Q   VS  + E   ++  T L
Sbjct:   299 KTIKPSGPNPARELKQT--VSDIKHEVHNQLEHTRL 332

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
 Identities = 86/318 (27%), Positives = 145/318 (45%)

Query:    49 NTPLHNVVTK-KHKRVIRILVEKDSAPSSYI----NKAYQTPLSIAIDVRLNDIACFIID 103
             +TPLH  V + K   ++ ++ E D      +    N++ +T L +A +    D+   ++ 
Sbjct:    18 DTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKILMK 77

Query:   104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
              S   L  T+  +     H      N         LQ +D++++    N +L    D  +
Sbjct:    78 HSDSVLAGTKAKNGFDAFHIAAKNGN---------LQVLDVLIE---ANPELSFTFDSSK 125

Query:   164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
                LH AA+ G+ ++V  LL+    LA     NG T LH AA NG   ++K LI K    
Sbjct:   126 TTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGM 185

Query:   224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
             +   D   ++ LH+A K  N  IV  ++++    +LIN  D  GNT LH+A     +++V
Sbjct:   186 VTRVDKKGQTALHMAVKGQNTEIVDVLMEADG--SLINSADNKGNTPLHIAVRKNRAEIV 243

Query:   284 FTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYA-KRALSAEE 342
              T+ ++  V+  A N+S    T L+I E T   + E+   L    ++ A + K A   E 
Sbjct:   244 QTVLKYCEVSRVAVNKSGE--TALDIAEKT--GLHEIVPLLQKIGMQNARSIKPAEKVEP 299

Query:   343 LQQKRQVSKEEGEKGKEM 360
                 R++ +   E G E+
Sbjct:   300 SGSSRKLKETVSEIGHEV 317

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 4.0e-17, P = 4.0e-17
 Identities = 112/503 (22%), Positives = 207/503 (41%)

Query:     3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETL--FGMRDIEGNTPLHNVVTKKH 60
             +TPLH+A   G   +V  ++  V +   + S    E L    ++D +GNT L+  +  ++
Sbjct:   136 QTPLHVATHGGHTKVVEALVASVTSALASLSTEESEGLNPHVLKDEDGNTALYYAIEGRY 195

Query:    61 KRVIRILVEKDS-APSSYINKAYQTPLSIAIDV--RLNDIACFIIDKSSESLNATRLPDE 117
               +   LV  D  AP    NK   + L  A+D   +  D+   I+ K+++  N  R   +
Sbjct:   196 LEMATCLVNADKDAPFLGNNKGISS-LYEAVDAGNKFEDLVKAIL-KTTDD-NVDREVRK 252

Query:   118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
               L     ++ N  L+      + I ++  IL     L++  D   R  L Y A+ G  +
Sbjct:   253 FNLDS--KLQGNKHLAHVALKAKSIGVLDVILDEYPSLMDEQDEDGRTCLSYGASIGYYK 310

Query:   178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
              +  +L  S +  Y  D +G+ P+H AA+N   +++K  I + P +  + +   ++ILHV
Sbjct:   311 GLCNILNRSTKGVYVCDQDGSFPIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHV 370

Query:   238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAK 297
             AAK+        ++   + ++L    D +GNT LHLA M    D +  L+      ++ +
Sbjct:   371 AAKNEASLTAYMLMHDKDTKHLGVGQDVDGNTPLHLAVMNWDFDSITCLASRNHEILKLR 430

Query:   298 NRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSAEELQQKR-QVSKEEGEK 356
             N+S      +   E+    +    +  TL  L   YA  +   E ++    Q    + +K
Sbjct:   431 NKSGLRARDIAESEVKPNYI--FHERWTLALL--LYAIHSSGFESVKSLTIQSVPLDPKK 486

Query:   357 GKEMAQTLLVMXXXXXXXXXXXXXXXPGGFKSDGLDE--GTTTLLHRXXXXXXXXXXXIV 414
              +     LLV+               PGG+ SD      G  TL              + 
Sbjct:   487 NRHYVNALLVVAALVATVTFAAGFTIPGGYISDSKKPNLGRATLATNPTLFIFLLFDILA 546

Query:   415 FWS--------FWRSKTES--LLDTLPLAIGFTWIALISMTLVFMTGLYAVLSNGLTITI 464
               S         W    +   +L +L +A+     +L+ M + F+ G+   +++   + +
Sbjct:   547 MQSSVATICTLIWAQLGDLALILKSLHVALPLLLFSLLCMPVAFLFGVITAIAHVKWLLV 606

Query:   465 VVCAISS-LLPFIFYVFAPFFMI 486
              +  IS     F  ++  P  M+
Sbjct:   607 TISIISGGFFLFAIFILGPHVML 629

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 6.2e-17, P = 6.2e-17
 Identities = 60/206 (29%), Positives = 107/206 (51%)

Query:   140 QFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGAT 199
             ++ DI  ++L     L    D     PLH+A  + N+++ + LLE  + LA + + +G T
Sbjct:   161 EYTDIARRMLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDGFT 220

Query:   200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
             PLHLAA    + +LK   +K P   +I   +  ++ H+AA+H N     F+ +SP+  NL
Sbjct:   221 PLHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAFYFMAESPDRNNL 280

Query:   260 INLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTE 319
             ++ +DR GNT LH A M     V+ +++   ++++ AKN   R    +++  +   D ++
Sbjct:   281 LHQVDRYGNTVLHTAVMSSCYSVIVSITYETTIDLSAKNN--RGLKAVDLINVDDEDYSK 338

Query:   320 VQKHLTLKALKTAYAKRALSAEELQQ 345
             + + L   A +     R+LS    QQ
Sbjct:   339 ISRWLRFDAKQI----RSLSDPNHQQ 360

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027408001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (668 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-16
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	9e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.001
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (268), Expect = 1e-27
 Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 5/127 (3%)

Query: 157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
           N  D   R PLH AA++G++++V+ LLE    +   +D +G TPLHLAA+NG L+++KLL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
           + K  D +  RD    + LH+AA++GN ++V  +LK       +N  D++G T LHLAA 
Sbjct: 60  LEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAK 115

Query: 277 GLHSDVV 283
             H +VV
Sbjct: 116 NGHLEVV 122

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGN 175
           D  T LH      + +             +VK+L  N   +N  D   R PLH AA +G+
Sbjct: 6   DGRTPLHLAASNGHLE-------------VVKLLLENGADVNAKDNDGRTPLHLAAKNGH 52

Query: 176 VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSIL 235
           +++V+ LLE        RD +G TPLHLAA NG L V+KLL+    D +  RD   R+ L
Sbjct: 53  LEIVKLLLEK-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPL 110

Query: 236 HVAAKHGNWNIVSFIL 251
           H+AAK+G+  +V  +L
Sbjct: 111 HLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 83.2 bits (206), Expect = 3e-19
 Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           RD +G TPLHLAA NG L+V+KLL+    D +  +DN  R+ LH+AAK+G+  IV  +L+
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 253 SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL-SRHKSVNIRAKN 298
                  +N  D++GNT LHLAA   + DVV  L      VN R K+
Sbjct: 62  KG---ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.0 bits (182), Expect = 5e-16
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 16/141 (11%)

Query: 77  YINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSM 136
             ++  +TPL +A      ++   +++  ++        D  T LH      + +     
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN--DGRTPLHLAAKNGHLE----- 54

Query: 137 QFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN 196
                   +VK+L      +N  D     PLH AA +GN+ +V+ LL+    +   RD +
Sbjct: 55  --------IVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKD 105

Query: 197 GATPLHLAAENGELKVLKLLI 217
           G TPLHLAA+NG L+V+KLL+
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.1 bits (180), Expect = 5e-16
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)

Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
           LH AA +GN+++V+ LLE    +         T LHLAA NG L+++KLL+    D +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGAD-VNA 56

Query: 227 RDNSDRSILHVAAKHGNWNIVSFILK 252
           +D    + LH+AA++GN  IV  +L+
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 14/111 (12%)

Query: 358 KEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDE--GTTTLLHRAT------MTSTMA 409
           ++   +LLV+ATLIAT  F A FT PGG+  D      GT  L  +        +++T+A
Sbjct: 5   EKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNTIA 64

Query: 410 -----AAAIVFWSFWRSKTESLLDTLPLAIGFTWIALISMTLVFMTGLYAV 455
                 A I+      S +  L   L   +   W++L+S+ + F  G Y V
Sbjct: 65  FVASLVAVILLLYIVPSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 7/98 (7%)

Query: 201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI 260
           LHLAA+NG L+++KLL+ K  D   +      + LH+AA++GN  IV  +L   E    +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLL---EHGADV 54

Query: 261 NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
           N  D++GNT+LHLAA   + ++V  L  H + +I  K+
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGA-DINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.8 bits (156), Expect = 8e-13
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 17/108 (15%)

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQ 180
           LH      N +L   ++ L  ++    +   + D            LH AA +GN+++V+
Sbjct: 1   LHLAAKNGNLEL---VKLL--LEKGADVNLGDTD----------TALHLAARNGNLEIVK 45

Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD 228
            LLE    +  K D +G T LHLAA NG L+++KLL+    D I ++D
Sbjct: 46  LLLEHGADVNAK-DKDGNTALHLAARNGNLEIVKLLLEHGAD-INLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 38/181 (20%), Positives = 66/181 (36%), Gaps = 62/181 (34%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TPLH+AA  G   +V  +++    VN              +D +G TPLH      H  
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNA-------------KDNDGRTPLHLAAKNGHLE 54

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           ++++L+EK  A  +  +K   TPL +A      D+   ++                    
Sbjct: 55  IVKLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKH------------------ 95

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                                      G + +  ++     R PLH AA +G++++V+ L
Sbjct: 96  ---------------------------GADVNARDK---DGRTPLHLAAKNGHLEVVKLL 125

Query: 183 L 183
           L
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 62.1 bits (150), Expect = 6e-11
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 8/204 (3%)

Query: 49  NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES 108
           N  L   +         +L        +  +   + PL         D     +  +S +
Sbjct: 40  NLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPL--HSAASKGDDKIVKLLLASGA 97

Query: 109 LNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLH 168
               +  D  T LH   +  N            ++      G + D+ N  D     PLH
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE-----AGADLDVNNLRDEDGNTPLH 152

Query: 169 YAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD 228
           +AA +G+  +V+ LLEA       R+  G T L  AA+NG ++++KLL++K      ++ 
Sbjct: 153 WAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Query: 229 NSDRSILHVAAKHGNWNIVSFILK 252
           N +       +K    N+ S I+ 
Sbjct: 212 NLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT 285
            RD   R+ LH+AA +G+  +V  +L++      +N  D +G T LHLAA   H ++V  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 286 LSRHK-SVNIRAKN 298
           L      VN R K+
Sbjct: 59  LLEKGADVNARDKD 72

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 20/267 (7%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSS 106
           E  TPL + +     +++ + + K  A  ++IN     PL  AI +  +DI   +ID   
Sbjct: 34  ETTTPLIDAIRSGDAKIVELFI-KHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGV 92

Query: 107 ES--LNATRLPDEL--TLLHFFVMRQNYDLSKSMQFLQFI----DI-MVKILGTNKDLIN 157
           ++  L    +  ++  T+L   +   N   ++   FL +     D+  +K+L      +N
Sbjct: 93  DTSILPIPCIEKDMIKTILDCGI-DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN 151

Query: 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
             D +   P+H A       +++ LLE       K D NG +PLH AAE G+   +KLLI
Sbjct: 152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLI 210

Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMG 277
           + + + I  +  +  + LH A  H N + +  ++ +      IN  D +G+T LH A   
Sbjct: 211 D-HGNHIMNKCKNGFTPLHNAIIH-NRSAIELLINNAS----INDQDIDGSTPLHHAINP 264

Query: 278 LHS-DVVFTLSRHKSVNIRAKNRSARN 303
               D++  L  HK+ +I  K+    N
Sbjct: 265 PCDIDIIDILLYHKA-DISIKDNKGEN 290

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.0 bits (147), Expect = 2e-10
 Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 16/208 (7%)

Query: 109 LNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL-----DWHQ 163
                L   L LL    +    D   ++     +     +      LI        D   
Sbjct: 14  CFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDG 73

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELK-----VLKLLI- 217
           R PLH AA+ G+ ++V+ LL +   +   +D +G TPLHLAA NG        V KLL+ 
Sbjct: 74  RLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 218 -NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
                D   +RD    + LH AA +G+ +IV  +L++       N  +  G T+L  AA 
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG---ADPNSRNSYGVTALDPAAK 189

Query: 277 GLHSDVVFTLSRHKSVNIRAKNRSARNN 304
               ++V  L          K       
Sbjct: 190 NGRIELVKLLLDKGLHLSLLKFNLEGVA 217

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
            R  LH AA SG +++V+ LLE    +  + D +G T LH+AAENG L+VLKLL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDI-NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 63/283 (22%), Positives = 124/283 (43%), Gaps = 40/283 (14%)

Query: 52  LHNVVTKKHKRVIRI-----LVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSS 106
           L++ +     R+I++     ++ +D        K    PL +A + R  D+   ++D  +
Sbjct: 1   LYSYIVLTKSRIIKVKNIKYIIMEDDLNDYSYKKPV-LPLYLAKEARNIDVVKILLDNGA 59

Query: 107 ESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNP 166
             +N++   +  T LH+      Y+L+   +       +VK+L      +N  D +   P
Sbjct: 60  -DINSSTK-NNSTPLHYLS-NIKYNLTDVKE-------IVKLLLEYGANVNAPDNNGITP 109

Query: 167 LHYAAA--SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVLKLLINK--- 219
           L YA +  S +  +V+ LL+    +  K   +G   LHL  E+   +LK+LKLLI+K   
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESNKIDLKILKLLIDKGVD 168

Query: 220 ------------YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNG 267
                       Y   I I+D    + LH A  + N   V ++L   ++    NL+++ G
Sbjct: 169 INAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL---DLGANPNLVNKYG 225

Query: 268 NTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEID 310
           +T LH+A +  + ++   L  +   +I+    +       +++
Sbjct: 226 DTPLHIAILNNNKEIFKLLLNNGP-SIKTIIETLLYFKDKDLN 267

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 18/187 (9%)

Query: 50  TPLHNVVTKKH-----KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLND--IACFII 102
           TPLH +   K+     K ++++L+E  +  ++  N    TPL  AI  + N   I  +++
Sbjct: 70  TPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI-TPLLYAISKKSNSYSIVEYLL 128

Query: 103 DKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFL----QFIDIM--VKILGTNKDLI 156
           D  +  +N     D   LLH ++   N    K ++ L      I+    V  L +    I
Sbjct: 129 DNGAN-VNIKN-SDGENLLHLYL-ESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPI 185

Query: 157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
           N  D +   PLHYA  + N + V+ LL+         +  G TPLH+A  N   ++ KLL
Sbjct: 186 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL-VNKYGDTPLHIAILNNNKEIFKLL 244

Query: 217 INKYPDA 223
           +N  P  
Sbjct: 245 LNNGPSI 251

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 148 ILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
           +L      +N  D +   PLH AA  G +++VQ LL+        RD +G T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 251
           T LH AA +G L+++K L+ K  D I   D    + LH+AA++GN  ++  +L
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 216 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274
           L+   P  +   D +  + LH+AAK+G   +V ++LK       +NL D +G T+L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD---LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 36/157 (22%)

Query: 152 NKDLINRLDWHQRNP------LHYAAAS--GNVQMVQRLLEA------SKQLAYKRDCN- 196
           N +L   L             LH  +      V+ +   L A        +LA  +  + 
Sbjct: 65  NLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSE 124

Query: 197 ---GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSD--------------RSILHVAA 239
              G T LHLAA     +++KLL+ +    +  R   D               S L+ AA
Sbjct: 125 FTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAA 183

Query: 240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
             G+ +IV+ + + P     I   D  GNT LHL  M
Sbjct: 184 CLGSPSIVALLSEDPAD---ILTADSLGNTLLHLLVM 217

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 13/69 (18%)

Query: 4  TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
          T LH+AAR G+  IV  ++++   VN              +D +GNT LH      +  +
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADVN-------------AKDKDGNTALHLAARNGNLEI 76

Query: 64 IRILVEKDS 72
          +++L+E  +
Sbjct: 77 VKLLLEHGA 85

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 232 RSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286
           R+ LH AA  G   +V ++L   E    IN  D +GNT+LH+AA   + +V+  L
Sbjct: 2   RTALHKAAISGRLELVKYLL---EKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           +G TPLHLAA NG L+V+KLL+    D +  RD 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGAD-VNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 177 QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           ++ + LL     +  K    G T LH A EN + ++ +LL++ Y   + I D ++ S LH
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIPDKTNNSPLH 206

Query: 237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296
            A KH N  IV  +L   E     +  D+ GNT LH++        +  L     V++ A
Sbjct: 207 HAVKHYNKPIVHILL---ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263

Query: 297 KNRSARNNTTLEI 309
           K+      T L  
Sbjct: 264 KS-YILGLTALHS 275

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 5/73 (6%)

Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHL 203
            +IL T     N  D+  R PLH A A+G+VQ+V+ LLE  A   L    D +G TPL L
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL---DKDGKTPLEL 154

Query: 204 AAENGELKVLKLL 216
           A ENG  +V++LL
Sbjct: 155 AEENGFREVVQLL 167

Length = 664

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 139 LQFIDIMVKIL--GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN 196
           L+ +DIM  ++  G + D+ N     + +PLH A   G+++ ++ L++    L  + DC 
Sbjct: 112 LKKLDIMKLLIARGADPDIPNT---DKFSPLHLAVMMGDIKGIELLIDHKACLDIE-DCC 167

Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256
           G TPL +A   G++ + K+L++   +      N   + L  A ++   +IV   +K    
Sbjct: 168 GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Query: 257 ENLINLID----------RNGNTSLHLAAMG-LHSDVVFTLSRHKSVNIRAKNRSARNNT 305
            N++ +I+           N  T+L   A+  L +D+   +  HK    R +     N +
Sbjct: 228 CNIMFMIEGEECTILDMICNMCTNLESEAIDALIADIA--IRIHKKTIRRDEGFK-NNMS 284

Query: 306 TLE 308
           T+E
Sbjct: 285 TIE 287

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238
           LLE         D NG TPLHLAA+ G L++++ L+    D + +RD+   + L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD-LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 16/99 (16%)

Query: 6   LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIR 65
           LH+AA+ G+  +V  +++    VN      + +T         +T LH      +  +++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN------LGDT---------DTALHLAARNGNLEIVK 45

Query: 66  ILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
           +L+E   A  +  +K   T L +A      +I   +++ 
Sbjct: 46  LLLEHG-ADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 52/249 (20%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           +T LH A + GD   +  + +Y   VN             + D  G  P+H  +      
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVN-------------IEDDNGCYPIHIAIKHNFFD 171

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIAC--FIIDKSSESLNATRLPDELTL 120
           +I++L+EK  A ++  +   ++PL  A      D AC   +ID  +  +N  +  +  T 
Sbjct: 172 IIKLLLEK-GAYANVKDNNGESPLHNA--AEYGDYACIKLLIDHGNHIMNKCK--NGFTP 226

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYA-AASGNVQMV 179
           LH  ++   ++ S            +++L  N   IN  D     PLH+A     ++ ++
Sbjct: 227 LHNAII---HNRS-----------AIELLINNAS-INDQDIDGSTPLHHAINPPCDIDII 271

Query: 180 QRLLEASKQLAYKRDCNGATPLHLAAEN-GELKVLKLLI---------NKYPDA-----I 224
             LL     ++  +D  G  P+  A +   +  V+K +I         +K  D+     I
Sbjct: 272 DILLYHKADISI-KDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHI 330

Query: 225 EIRDNSDRS 233
           EI+DN + S
Sbjct: 331 EIKDNKEFS 339

Length = 434

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPD 222
           +G TPLHLAAENG L+V+KLL++K  D
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 55/250 (22%), Positives = 93/250 (37%), Gaps = 46/250 (18%)

Query: 44  RDIEGNTPLHNVVTKKHK-RVIRILVEKDSAPSSYINKAYQTPLSI-----AIDVRLNDI 97
            +  G TPLH  +       VI++L++   A  +  +K  +TPL +      I+     +
Sbjct: 79  PERCGFTPLHLYLYNATTLDVIKLLIKA-GADVNAKDKVGRTPLHVYLSGFNINP---KV 134

Query: 98  ACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL------GT 151
              ++ K +  +NA  L   +T L   +  +N ++            ++++L        
Sbjct: 135 IRLLLRKGA-DVNALDL-YGMTPLAVLLKSRNANVE-----------LLRLLIDAGADVY 181

Query: 152 NKDLINR--LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG- 208
             D   R  L  H ++    A        + R L  +       D  G TPLH  A    
Sbjct: 182 AVDDRFRSLLHHHLQSFKPRAR-------IVRELIRAGCDPAATDMLGNTPLHSMATGSS 234

Query: 209 --ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRN 266
                VL LLI     +I  R+   ++ LH AA   N      ++    +   IN +  +
Sbjct: 235 CKRSLVLPLLIAGI--SINARNRYGQTPLHYAAVFNNPRACRRLIA---LGADINAVSSD 289

Query: 267 GNTSLHLAAM 276
           GNT L L   
Sbjct: 290 GNTPLSLMVR 299

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
           TPLHIAA  G    V  ++K+   V+             +RD  GNT L N ++ KH ++
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVH-------------IRDANGNTALWNAISAKHHKI 606

Query: 64  IRILVEKDSAPSSYI 78
            RIL    S    + 
Sbjct: 607 FRILYHFASISDPHA 621

Length = 823

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.83
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
PF13962	113	PGG: Domain of unknown function	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.31
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.26
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.24
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.23
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.21
PF13606	30	Ank_3: Ankyrin repeat	98.86
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
PF13606	30	Ank_3: Ankyrin repeat	98.68
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.65
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.64
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.6
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.59
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.56
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.53
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.51
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.49
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.44
KOG0522	560	consensus Ankyrin repeat protein [General function	98.4
KOG0522	560	consensus Ankyrin repeat protein [General function	98.27
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.23
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.17
KOG0511	516	consensus Ankyrin repeat protein [General function	98.12
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.09
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.01
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.99
KOG2384	223	consensus Major histocompatibility complex protein	97.92
KOG0511	516	consensus Ankyrin repeat protein [General function	97.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.8
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.76
KOG2384	223	consensus Major histocompatibility complex protein	97.62
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.57
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.04
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.7
KOG2505	591	consensus Ankyrin repeat protein [General function	96.24
KOG2505	591	consensus Ankyrin repeat protein [General function	96.01
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.51
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.2
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.86
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.27
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.78
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.16
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	88.5
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	85.2

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1e-41  Score=345.10  Aligned_cols=280  Identities=20%  Similarity=0.204  Sum_probs=184.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhC--cHHHHHHHHHcCCCCCcCCc
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKK--HKRVIRILVEKDSAPSSYIN   79 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g--~~e~v~~Ll~~g~~~~~~~~   79 (534)
                      |+||||+||+.|+.++|++|+++|+++|.             +|..|.||||+|+..+  +.+++++|+++|++++...|
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~GAdin~-------------~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d  138 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHGADPNA-------------CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVD  138 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCC-------------CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccC
Confidence            66777777777777777777777766662             6667777777766654  36667777777766654456


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc
Q 039300           80 KAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL  159 (534)
Q Consensus        80 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  159 (534)
                      ..|.|||| |+..|+.+++++|++.|++ .+..+. .|.||||.|+..++....       .++.+++    .|.+++..
T Consensus       139 ~~g~tpL~-aa~~~~~~vv~~Ll~~gad-~~~~d~-~G~t~Lh~A~~~~~~~~~-------~v~~Ll~----~Gadin~~  204 (446)
T PHA02946        139 EEGCGPLL-ACTDPSERVFKKIMSIGFE-ARIVDK-FGKNHIHRHLMSDNPKAS-------TISWMMK----LGISPSKP  204 (446)
T ss_pred             CCCCcHHH-HHHCCChHHHHHHHhcccc-ccccCC-CCCCHHHHHHHhcCCCHH-------HHHHHHH----cCCCCccc
Confidence            66777775 4555667777777776665 455554 677777776665543210       0333333    34667777


Q ss_pred             cCCCCcHHHHHHhCC--CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc-HHHHHHHHHhCCCc-------------
Q 039300          160 DWHQRNPLHYAAASG--NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE-LKVLKLLINKYPDA-------------  223 (534)
Q Consensus       160 d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~-------------  223 (534)
                      |.+|.||||+|+..|  +.+++++|++ |++++ .+|..|.||||+|++.++ .++++.|++++.+.             
T Consensus       205 d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin-~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~  282 (446)
T PHA02946        205 DHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN-KQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDR  282 (446)
T ss_pred             CCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC-CCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCc
Confidence            777777887777765  6677777774 65543 667777778877777766 46777777766431             


Q ss_pred             ------cccc-cCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhh
Q 039300          224 ------IEIR-DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA  296 (534)
Q Consensus       224 ------~~~~-d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  296 (534)
                            ++.. +..|+||||+|+.+|+.+++++|++++.          +|.||||+|+..++.+++++|+.+ |+++|.
T Consensus       283 ~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~----------~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~  351 (446)
T PHA02946        283 DDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI----------ICEDAMYYAVLSEYETMVDYLLFN-HFSVDS  351 (446)
T ss_pred             hHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC----------ccccHHHHHHHhCHHHHHHHHHHC-CCCCCC
Confidence                  0111 1246678888877777788877777642          467788888888877888888877 677777


Q ss_pred             ccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHH
Q 039300          297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKT  331 (534)
Q Consensus       297 ~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~  331 (534)
                      + .  .|.||+++|..       ..+.++++.|+.
T Consensus       352 ~-~--~G~t~l~~a~~-------~~~~~~~~~ll~  376 (446)
T PHA02946        352 V-V--NGHTCMSECVR-------LNNPVILSKLML  376 (446)
T ss_pred             c-c--ccccHHHHHHH-------cCCHHHHHHHHh
Confidence            4 4  68888888877       445666666665

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.3e-42  Score=340.91  Aligned_cols=300  Identities=24%  Similarity=0.313  Sum_probs=259.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |.||||+|+.....+.|+.|++.|++++             ..|..+.+|+|+|+..|+.++.+.|+++|++++ ..|..
T Consensus        88 ~n~~l~~a~~~~~~~~i~~Lls~gad~~-------------~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvn-l~de~  153 (929)
T KOG0510|consen   88 DNTPLHAAVEYNQGDKIQVLLSYGADTP-------------LRNLNKNAPLHLAADSGNYSCLKLLLDYGADVN-LEDEN  153 (929)
T ss_pred             cCchhHHHhhcchHHHHHHHHhcCCCCC-------------hhhhhccCchhhccccchHHHHHHHHHhcCCcc-ccccC
Confidence            7899999999999999999999999877             488899999999999999999999999998875 78999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHH-hCCChhhhhccc
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKI-LGTNKDLINRLD  160 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~d  160 (534)
                      |.||||+||..++.|..+.|++.+++ +...+. +|.+|+|.|++.+..++         .+.++.. ..+.+..+|..+
T Consensus       154 ~~TpLh~A~~~~~~E~~k~Li~~~a~-~~K~~~-~~~~~iH~aa~s~s~e~---------mEi~l~~~g~~r~~~in~~~  222 (929)
T KOG0510|consen  154 GFTPLHLAARKNKVEAKKELINKGAD-PCKSDI-DGNFPIHEAARSGSKEC---------MEIFLPEHGYERQTHINFDN  222 (929)
T ss_pred             CCchhhHHHhcChHHHHHHHHhcCCC-CCcccC-cCCchHHHHHHhcchhh---------hhhhhccccchhhccccccc
Confidence            99999999999999988999999998 344444 89999999999999998         7766662 223446688889


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhh--------------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccc
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLA--------------YKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI  226 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~--------------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  226 (534)
                      ..+.||||.|+..|+.++++.+++.|+...              +..|.+|.||||+|++.|+.++++.|+..|++ ++.
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~  301 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INS  301 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccc
Confidence            999999999999999999999998876332              23578899999999999999999999999999 899


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchh---hccccCCC
Q 039300          227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR---AKNRSARN  303 (534)
Q Consensus       227 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~---~~n~~~~g  303 (534)
                      ++.++.||||.|+.+|+.+.++-|++ ..+..+.|..|..|+||||+|+++|+..++++|++. |++..   ..|.  +|
T Consensus       302 kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~--dg  377 (929)
T KOG0510|consen  302 KNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADS--DG  377 (929)
T ss_pred             cCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-Chhhhccccccc--CC
Confidence            99999999999999999999999998 333567899999999999999999999999999998 45544   4477  99


Q ss_pred             CChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          304 NTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       304 ~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      .||||.|..       ..+...++.|+.+|++.+.
T Consensus       378 ~TaLH~Aa~-------~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  378 NTALHLAAK-------YGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             chhhhHHHH-------hccHHHHHHHHHcCCceee
Confidence            999999998       6778889999999998743

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=322.95  Aligned_cols=280  Identities=25%  Similarity=0.368  Sum_probs=249.6

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      +.+|||+|+..|..++.+.|+++|+++|             ..|+.|.||||.||..++.|..+.|++.|+++. ..|.+
T Consensus       121 ~~aplh~A~~~~~~s~L~~Ll~~~~dvn-------------l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~  186 (929)
T KOG0510|consen  121 KNAPLHLAADSGNYSCLKLLLDYGADVN-------------LEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDID  186 (929)
T ss_pred             ccCchhhccccchHHHHHHHHHhcCCcc-------------ccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCc
Confidence            5789999999999999999999999988             489999999999999999998899999999985 78999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCC----CcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCC-----
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSE----SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTN-----  152 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----  152 (534)
                      |..|+|.|+.+|..++.+..+.+.+.    .++..+. ++.+|||.|+..|+.++         ++.+++.....     
T Consensus       187 ~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n-~~~~pLhlAve~g~~e~---------lk~~L~n~~~~a~~~~  256 (929)
T KOG0510|consen  187 GNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNN-EKATPLHLAVEGGDIEM---------LKMCLQNGKKIADVQL  256 (929)
T ss_pred             CCchHHHHHHhcchhhhhhhhccccchhhcccccccC-CCCcchhhhhhcCCHHH---------HHHHHhCccccchhhh
Confidence            99999999999999999999983222    3566665 89999999999999999         66666543321     


Q ss_pred             ------hhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHH-hCCCccc
Q 039300          153 ------KDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN-KYPDAIE  225 (534)
Q Consensus       153 ------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~  225 (534)
                            ...++..|.+|.||||+|++.|+.+.++.|+..|++.. .++.++.||||.||..|+.+.++.|++ .+....+
T Consensus       257 ~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~-~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rlln  335 (929)
T KOG0510|consen  257 DAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN-SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLN  335 (929)
T ss_pred             HHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc-ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccc
Confidence                  24577889999999999999999999999999999976 788999999999999999999999999 6655688


Q ss_pred             cccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCC
Q 039300          226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNT  305 (534)
Q Consensus       226 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t  305 (534)
                      ..|..|+||||+|+++|+..++++|+++|+........|.+|+||||+|+..|+..+++.|+.+ |+++..+|.  +|.+
T Consensus       336 e~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~--~g~S  412 (929)
T KOG0510|consen  336 ESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNK--KGKS  412 (929)
T ss_pred             cccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccc--cccc
Confidence            8999999999999999999999999999987321115699999999999999999999999999 899999999  9999


Q ss_pred             hHHH
Q 039300          306 TLEI  309 (534)
Q Consensus       306 ~l~~  309 (534)
                      ++++
T Consensus       413 A~~~  416 (929)
T KOG0510|consen  413 AFDT  416 (929)
T ss_pred             cccc
Confidence            9995

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.4e-40  Score=333.97  Aligned_cols=287  Identities=16%  Similarity=0.178  Sum_probs=243.5

Q ss_pred             CCHHHHHHh--cCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            3 ETPLHIAAR--IGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         3 ~T~Lh~Aa~--~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .++||.++.  .++.++|++|+++|+++|.             +|.+|.||||+|+..|+.++|++|+++|++++ ..|.
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~-------------~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin-~~d~  103 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNE-------------TDDDGNYPLHIASKINNNRIVAMLLTHGADPN-ACDK  103 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCc-------------cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCC
Confidence            589998874  4578999999999999884             89999999999999999999999999999986 7899


Q ss_pred             CCCcHHHHHHHcC--cHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc
Q 039300           81 AYQTPLSIAIDVR--LNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR  158 (534)
Q Consensus        81 ~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~  158 (534)
                      .|.||||+|+..+  ..+++++|+++|++.....+. .|.|||| |+..++.++         ++.+++.    +.+++.
T Consensus       104 ~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~-~g~tpL~-aa~~~~~~v---------v~~Ll~~----gad~~~  168 (446)
T PHA02946        104 QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE-EGCGPLL-ACTDPSERV---------FKKIMSI----GFEARI  168 (446)
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC-CCCcHHH-HHHCCChHH---------HHHHHhc----cccccc
Confidence            9999999998866  489999999999984334455 8999998 556677777         6666654    477899


Q ss_pred             ccCCCCcHHHHHHhCC--CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcC--cHHHHHHHHHhCCCccccccCCCCcH
Q 039300          159 LDWHQRNPLHYAAASG--NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVLKLLINKYPDAIEIRDNSDRSI  234 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~  234 (534)
                      .|..|+||||+|+..+  +.+++++|++.|+++. .+|..|.||||+|+..|  +.+++++|++ +++ ++.+|..|+||
T Consensus       169 ~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin-~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~Tp  245 (446)
T PHA02946        169 VDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS-KPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSP  245 (446)
T ss_pred             cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCH
Confidence            9999999999988755  4689999999999865 78999999999999986  8899999985 776 89999999999


Q ss_pred             HHHHHhcCC-HHHHHHHHhCCccc-----------------ccccccC-CCCCcHHHHHHhcCChhHHHHhhhCcccchh
Q 039300          235 LHVAAKHGN-WNIVSFILKSPEME-----------------NLINLID-RNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR  295 (534)
Q Consensus       235 Lh~A~~~~~-~~~~~~Ll~~~~~~-----------------~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~  295 (534)
                      ||+|+..++ .+++++|+++++..                 ..++..+ ..|.||||+|+..|+.+++++|++++     
T Consensus       246 Lh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~-----  320 (446)
T PHA02946        246 LTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND-----  320 (446)
T ss_pred             HHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC-----
Confidence            999999988 58999999886531                 0123332 46889999999999999999999872     


Q ss_pred             hccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          296 AKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       296 ~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                         .  .|+|||++|..       ....+++++|+.+|++.+.
T Consensus       321 ---~--~~~t~L~~A~~-------~~~~~~v~~Ll~~ga~~n~  351 (446)
T PHA02946        321 ---I--ICEDAMYYAVL-------SEYETMVDYLLFNHFSVDS  351 (446)
T ss_pred             ---C--ccccHHHHHHH-------hCHHHHHHHHHHCCCCCCC
Confidence               2  78999999998       5678999999999998665

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-40  Score=334.73  Aligned_cols=288  Identities=23%  Similarity=0.330  Sum_probs=248.0

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      ..|+.|+..|+.+.|+.|++.+..            .++..+.+|.||||.|++.|+.++|++|++.|++++ ..+..|.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~------------~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n-~~~~~~~   69 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN------------CINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN-HINTKIP   69 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCC
Confidence            468999999999999999986543            223578889999999999999999999999999885 6788899


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCC----------------------cccCCCCCCchHHHHHHHhcCcchhhhhhhHHH
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSSES----------------------LNATRLPDELTLLHFFVMRQNYDLSKSMQFLQF  141 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~~~----------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~  141 (534)
                      ||||.|+..|+.+++++|+++|++.                      ++..+. .|.||||+|+..++.++         
T Consensus        70 t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~-~g~T~Lh~A~~~~~~~~---------  139 (434)
T PHA02874         70 HPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA-ELKTFLHYAIKKGDLES---------  139 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCC-CCccHHHHHHHCCCHHH---------
Confidence            9999999999999999999988652                      234444 89999999999999998         


Q ss_pred             HHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCC
Q 039300          142 IDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP  221 (534)
Q Consensus       142 ~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  221 (534)
                      ++.+++.    +.+++..|..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||.|+..|+.+++++|++.++
T Consensus       140 v~~Ll~~----gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~  214 (434)
T PHA02874        140 IKMLFEY----GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN-VKDNNGESPLHNAAEYGDYACIKLLIDHGN  214 (434)
T ss_pred             HHHHHhC----CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            7777765    36788899999999999999999999999999999865 678899999999999999999999999999


Q ss_pred             CccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC-ChhHHHHhhhCcccchhhcccc
Q 039300          222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL-HSDVVFTLSRHKSVNIRAKNRS  300 (534)
Q Consensus       222 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~~~~~~~n~~  300 (534)
                      + ++.++..|.||||.|+..+. +.+++|+. +++   +|.+|.+|+||||+|+..+ +.+++++|+++ |+|++.+|. 
T Consensus       215 ~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~-~~~---in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~-gad~n~~d~-  286 (434)
T PHA02874        215 H-IMNKCKNGFTPLHNAIIHNR-SAIELLIN-NAS---INDQDIDGSTPLHHAINPPCDIDIIDILLYH-KADISIKDN-  286 (434)
T ss_pred             C-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc-CCC---CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC-cCCCCCCCC-
Confidence            8 78899999999999999875 56666664 444   8999999999999999876 78999999998 899999999 


Q ss_pred             CCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhh
Q 039300          301 ARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYA  334 (534)
Q Consensus       301 ~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga  334 (534)
                       .|.|||++|....      ....+.+.|+..+.
T Consensus       287 -~g~TpL~~A~~~~------~~~~~ik~ll~~~~  313 (434)
T PHA02874        287 -KGENPIDTAFKYI------NKDPVIKDIIANAV  313 (434)
T ss_pred             -CCCCHHHHHHHhC------CccHHHHHHHHhcC
Confidence             9999999998622      12345566666554

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.3e-40  Score=353.35  Aligned_cols=291  Identities=23%  Similarity=0.268  Sum_probs=185.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC------
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS------   75 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~------   75 (534)
                      |+||||+||+.|+.++|++|+++|++++.             .+..|.||||.|+..|+.+++++|++.+++..      
T Consensus       178 G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~-------------~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L  244 (682)
T PHA02876        178 CITPIHYAAERGNAKMVNLLLSYGADVNI-------------IALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSL  244 (682)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCc-------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHH
Confidence            66777777777777777777777776652             55566666666666666666655554433211      


Q ss_pred             ----------------------cCCccCCCcHHHHHHHcCcH-HHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC-cc
Q 039300           76 ----------------------SYINKAYQTPLSIAIDVRLN-DIACFIIDKSSESLNATRLPDELTLLHFFVMRQN-YD  131 (534)
Q Consensus        76 ----------------------~~~~~~g~tpL~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~  131 (534)
                                            +..+..|.||||+|+..++. +++++|++.|++ ++..+. .|.||||.|+..|. .+
T Consensus       245 ~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad-in~~d~-~g~TpLh~Aa~~g~~~~  322 (682)
T PHA02876        245 LKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD-VNAKNI-KGETPLYLMAKNGYDTE  322 (682)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC-CCCcCC-CCCCHHHHHHHhCCCHH
Confidence                                  13345566777777766664 466666666665 444444 66777777776663 44


Q ss_pred             hhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhC-CCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcH
Q 039300          132 LSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAAS-GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL  210 (534)
Q Consensus       132 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  210 (534)
                      .         ++.++..    +.+++..|..|.||||+|+.. ++.++++.|++.|+++. .+|..|.||||+|+..|+.
T Consensus       323 ~---------v~~Ll~~----gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin-~~d~~G~TpLh~Aa~~~~~  388 (682)
T PHA02876        323 N---------IRTLIML----GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVN-ARDYCDKTPIHYAAVRNNV  388 (682)
T ss_pred             H---------HHHHHHc----CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCc-cCCCCCCCHHHHHHHcCCH
Confidence            4         3333332    355666666777777777664 35666777777776654 5566777777777777777


Q ss_pred             HHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-HHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC-ChhHHHHhhh
Q 039300          211 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL-HSDVVFTLSR  288 (534)
Q Consensus       211 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~  288 (534)
                      ++++.|++.|++ ++..+..|.||||+|+..++ ..++++|++.|++   +|.+|.+|+||||+|+..+ +.+++++|++
T Consensus       389 ~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad---in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        389 VIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN---VNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             HHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC---CCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence            777777777766 66666777777777765544 3456677776665   6777777777777777655 4577777777


Q ss_pred             CcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhcc
Q 039300          289 HKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA  337 (534)
Q Consensus       289 ~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  337 (534)
                      + |+|++.+|.  .|.||+++|..         ...+++.|+..|++..
T Consensus       465 ~-Gad~n~~d~--~g~tpl~~a~~---------~~~~v~~Ll~~~a~~~  501 (682)
T PHA02876        465 N-GADVNAINI--QNQYPLLIALE---------YHGIVNILLHYGAELR  501 (682)
T ss_pred             C-CCCCCCCCC--CCCCHHHHHHH---------hCCHHHHHHHCCCCCC
Confidence            6 677777777  77777777665         1235566666666544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.2e-39  Score=339.06  Aligned_cols=292  Identities=15%  Similarity=0.146  Sum_probs=207.3

Q ss_pred             cCCHHHHHHHHhcC-ccccccCchhhhhhhhccc-CCCCCcHhHHHHHh--CcHHHHHHHHHcCCCCCcCCccCCCcHHH
Q 039300           12 IGDHAIVSEIMKYV-PAVNQAGSASVLETLFGMR-DIEGNTPLHNVVTK--KHKRVIRILVEKDSAPSSYINKAYQTPLS   87 (534)
Q Consensus        12 ~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~~l~~~-d~~g~TpLh~A~~~--g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~   87 (534)
                      .++.++|++|+++| +++|.             + |..|.||||.|+.+  ++.+++++|+++|++++ ..|..|.||||
T Consensus       152 ~v~leiVk~LLe~G~ADIN~-------------~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN-~kD~~G~TPLH  217 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNY-------------VCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVN-LQNNHLITPLH  217 (764)
T ss_pred             CCCHHHHHHHHHCCCCCccc-------------ccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCC-CCCCCCCCHHH
Confidence            45666666666666 55552             3 55566666655432  34566666666665553 44555666666


Q ss_pred             HHHHcCc--HHHHHHHHhcCCCCcccCCCCCCchHHHHHH-------------------------------------Hhc
Q 039300           88 IAIDVRL--NDIACFIIDKSSESLNATRLPDELTLLHFFV-------------------------------------MRQ  128 (534)
Q Consensus        88 ~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~-------------------------------------~~~  128 (534)
                      +|+..|+  .+++++|+++|++ ++..+. .|.||||.|+                                     ..+
T Consensus       218 ~Aa~~g~~~~eIVklLLe~GAD-VN~kD~-~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g  295 (764)
T PHA02716        218 TYLITGNVCASVIKKIIELGGD-MDMKCV-NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNI  295 (764)
T ss_pred             HHHHcCCCCHHHHHHHHHcCCC-CCCCCC-CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcC
Confidence            6666553  3566666666655 444444 5666666553                                     333


Q ss_pred             CcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHh--CCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300          129 NYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAA--SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE  206 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  206 (534)
                      +.++         ++.++    +.|.+++.+|..|+||||+|+.  .++.+++++|++.|+++. .+|..|.||||+|+.
T Consensus       296 ~lei---------VklLL----e~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~  361 (764)
T PHA02716        296 DISV---------VYSFL----QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLS  361 (764)
T ss_pred             CHHH---------HHHHH----hCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHH
Confidence            3333         44444    4457789999999999999764  467899999999999865 789999999999875


Q ss_pred             --------------cCcHHHHHHHHHhCCCccccccCCCCcHHHH----HHhcCCHHHHHHHHhCCccc-----------
Q 039300          207 --------------NGELKVLKLLINKYPDAIEIRDNSDRSILHV----AAKHGNWNIVSFILKSPEME-----------  257 (534)
Q Consensus       207 --------------~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~----A~~~~~~~~~~~Ll~~~~~~-----------  257 (534)
                                    .++.++++.|+++|++ ++.+|..|+||||.    |...++.+++++|++.+...           
T Consensus       362 ~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll  440 (764)
T PHA02716        362 MLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLL  440 (764)
T ss_pred             hhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhh
Confidence                          3789999999999998 89999999999994    23356789999988754210           


Q ss_pred             -----------------------------------------------ccccccCCCCCcHHHHHHhcCChh-----HHHH
Q 039300          258 -----------------------------------------------NLINLIDRNGNTSLHLAAMGLHSD-----VVFT  285 (534)
Q Consensus       258 -----------------------------------------------~~~~~~d~~g~t~Lh~A~~~~~~~-----~v~~  285 (534)
                                                                     ..+|..|..|+||||+|+..|+.+     ++++
T Consensus       441 ~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~  520 (764)
T PHA02716        441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVY  520 (764)
T ss_pred             hccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHH
Confidence                                                           013556889999999999998874     4599


Q ss_pred             hhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccCC
Q 039300          286 LSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALS  339 (534)
Q Consensus       286 Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~~  339 (534)
                      |++. |+|+|.+|.  .|+|||++|.....  .+....++++.|++.|+..+..
T Consensus       521 LL~~-GADIN~~d~--~G~TPLh~A~~~g~--~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        521 LLSI-QYNINIPTK--NGVTPLMLTMRNNR--LSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHhC-CCCCcccCC--CCCCHHHHHHHcCC--ccccHHHHHHHHHhcCCCcchH
Confidence            9988 899999999  99999999997321  1223558999999999886654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-39  Score=336.12  Aligned_cols=287  Identities=22%  Similarity=0.222  Sum_probs=255.9

Q ss_pred             HHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhC---cHHHHHHHHHcCCCCCcCCccCCC
Q 039300            7 HIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKK---HKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         7 h~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g---~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      ..|+..++.++|++|+++|++++.             +|..|.||||+|+..+   +.+++++|++.|++++ ..+..|.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~-------------~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin-~~~~~g~   84 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNF-------------RGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN-APERCGF   84 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCccc-------------CCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC-CCCCCCC
Confidence            457788999999999999999884             8899999999999999   9999999999999986 6788999


Q ss_pred             cHHHHHHHcC-cHHHHHHHHhcCCCCcccCCCCCCchHHHHHH--HhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           84 TPLSIAIDVR-LNDIACFIIDKSSESLNATRLPDELTLLHFFV--MRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        84 tpL~~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      ||||+|+..| +.+++++|+++|++ ++..+. .|.||||.|+  ..++.++         ++.|++.    +.+++..|
T Consensus        85 TpLh~A~~~~~~~~iv~lLl~~ga~-in~~~~-~g~tpLh~a~~~~~~~~~i---------v~~Ll~~----gad~~~~d  149 (471)
T PHA03095         85 TPLHLYLYNATTLDVIKLLIKAGAD-VNAKDK-VGRTPLHVYLSGFNINPKV---------IRLLLRK----GADVNALD  149 (471)
T ss_pred             CHHHHHHHcCCcHHHHHHHHHcCCC-CCCCCC-CCCCHHHHHhhCCcCCHHH---------HHHHHHc----CCCCCccC
Confidence            9999999999 59999999999998 677776 8999999999  4445666         6666665    46789999


Q ss_pred             CCCCcHHHHHHhCC--CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc--CcHHHHHHHHHhCCCccccccCCCCcHHH
Q 039300          161 WHQRNPLHYAAASG--NVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN--GELKVLKLLINKYPDAIEIRDNSDRSILH  236 (534)
Q Consensus       161 ~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  236 (534)
                      ..|.||||+|+..+  +.+++++|++.|+++... |..|.||||.|+..  ++.++++.|++.|.+ ++.+|..|+||||
T Consensus       150 ~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh  227 (471)
T PHA03095        150 LYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLH  227 (471)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHH
Confidence            99999999998866  689999999999987754 88999999999875  789999999999999 8999999999999


Q ss_pred             HHHhcCCH--HHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhh
Q 039300          237 VAAKHGNW--NIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTR  314 (534)
Q Consensus       237 ~A~~~~~~--~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~  314 (534)
                      +|+..|+.  .+++.|++.+.+   +|.+|..|+||||+|+..|+.+++++|++. |+|++.+|.  .|.||+++|..  
T Consensus       228 ~Aa~~~~~~~~~v~~ll~~g~d---in~~d~~g~TpLh~A~~~~~~~~v~~LL~~-gad~n~~~~--~g~tpl~~A~~--  299 (471)
T PHA03095        228 SMATGSSCKRSLVLPLLIAGIS---INARNRYGQTPLHYAAVFNNPRACRRLIAL-GADINAVSS--DGNTPLSLMVR--  299 (471)
T ss_pred             HHHhcCCchHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCC--CCCCHHHHHHH--
Confidence            99999975  688889999877   999999999999999999999999999998 899999999  99999999998  


Q ss_pred             hchHHHHHHhHHHHHHHHhhhcc
Q 039300          315 ADVTEVQKHLTLKALKTAYAKRA  337 (534)
Q Consensus       315 ~~~~~~~~~~~~~~L~~~ga~~~  337 (534)
                           .....+++.|++.++...
T Consensus       300 -----~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        300 -----NNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             -----hCCHHHHHHHHHhCCCHH
Confidence                 556778888888876543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-39  Score=347.84  Aligned_cols=295  Identities=21%  Similarity=0.211  Sum_probs=256.5

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCC
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY   82 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g   82 (534)
                      .++|+.|+..|+.+++++|++.|+++|.             +|..|.||||+|+..|+.++|++|+++|+++. ..+.+|
T Consensus       146 ~~~l~~~i~~~~~~i~k~Ll~~Gadvn~-------------~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n-~~~~~g  211 (682)
T PHA02876        146 MKLIKERIQQDELLIAEMLLEGGADVNA-------------KDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDD  211 (682)
T ss_pred             hHHHHHHHHCCcHHHHHHHHhCCCCCCC-------------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-ccCCCC
Confidence            3678999999999999999999999884             89999999999999999999999999999985 678899


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCC----------------------------cccCCCCCCchHHHHHHHhcCcchhh
Q 039300           83 QTPLSIAIDVRLNDIACFIIDKSSES----------------------------LNATRLPDELTLLHFFVMRQNYDLSK  134 (534)
Q Consensus        83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~----------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~  134 (534)
                      .||||.|+..|+.+++++|++.+.+.                            .+..+. .|.||||+|+..++.+.  
T Consensus       212 ~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~-~g~TpLh~Aa~~~~~~~--  288 (682)
T PHA02876        212 LSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD-CKNTPLHHASQAPSLSR--  288 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhCCCHHH--
Confidence            99999999999999998888766531                            334444 78999999999887532  


Q ss_pred             hhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCC-CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc-CcHHH
Q 039300          135 SMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASG-NVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN-GELKV  212 (534)
Q Consensus       135 ~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~  212 (534)
                                +++.+.+.+.+++..|..|.||||+|+..| +.++++.|++.|+++. ..|..|.||||.|+.. ++.++
T Consensus       289 ----------iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin-~~d~~g~TpLh~A~~~~~~~~i  357 (682)
T PHA02876        289 ----------LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN-AADRLYITPLHQASTLDRNKDI  357 (682)
T ss_pred             ----------HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCC-CcccCCCcHHHHHHHhCCcHHH
Confidence                      233333445778999999999999999999 6999999999999866 6788999999999985 57899


Q ss_pred             HHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh-hHHHHhhhCcc
Q 039300          213 LKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS-DVVFTLSRHKS  291 (534)
Q Consensus       213 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~~v~~Ll~~~~  291 (534)
                      ++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|++   ++..+..|.||||+|+..++. .++++|+++ |
T Consensus       358 v~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad---~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~-g  432 (682)
T PHA02876        358 VITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD---IEALSQKIGTALHFALCGTNPYMSVKTLIDR-G  432 (682)
T ss_pred             HHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCCCchHHHHHHcCCHHHHHHHHHhC-C
Confidence            9999999998 899999999999999999999999999999887   899999999999999987764 668888887 8


Q ss_pred             cchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          292 VNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       292 ~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      +++|.+|.  .|.|||++|+..      .....++++|++.|++.+.
T Consensus       433 adin~~d~--~G~TpLh~Aa~~------~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        433 ANVNSKNK--DLSTPLHYACKK------NCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             CCCCcCCC--CCChHHHHHHHh------CCcHHHHHHHHHCCCCCCC
Confidence            99999999  999999999871      1246789999999998765

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-39  Score=336.64  Aligned_cols=264  Identities=24%  Similarity=0.358  Sum_probs=243.0

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHH-----HHHhCcHHHHHHHHHcCCCCC
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHN-----VVTKKHKRVIRILVEKDSAPS   75 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~-----A~~~g~~e~v~~Ll~~g~~~~   75 (534)
                      +|.||||.|++.|+.++|++|+++|++++.             .+..|.||||+     |+..|+.+++++|+++|+++ 
T Consensus        34 ~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~-------------~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-   99 (480)
T PHA03100         34 KPVLPLYLAKEARNIDVVKILLDNGADINS-------------STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-   99 (480)
T ss_pred             ccchhhhhhhccCCHHHHHHHHHcCCCCCC-------------ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-
Confidence            478999999999999999999999999884             78889999999     99999999999999999998 


Q ss_pred             cCCccCCCcHHHHHH--HcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc--CcchhhhhhhHHHHHHHHHHhCC
Q 039300           76 SYINKAYQTPLSIAI--DVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ--NYDLSKSMQFLQFIDIMVKILGT  151 (534)
Q Consensus        76 ~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~~~~~~~~~~~~~ll~~~~~  151 (534)
                      +..+..|.||||+|+  ..|+.+++++|+++|++ .+..+. .|.||||.|+..+  +.++         ++.+++.   
T Consensus       100 ~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~-~g~t~L~~A~~~~~~~~~i---------v~~Ll~~---  165 (480)
T PHA03100        100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNS-DGENLLHLYLESNKIDLKI---------LKLLIDK---  165 (480)
T ss_pred             CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCC-CCCcHHHHHHHcCCChHHH---------HHHHHHC---
Confidence            578999999999999  99999999999999987 566666 8999999999999  8887         7777765   


Q ss_pred             ChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCC------CcHHHHHHHcCc--HHHHHHHHHhCCCc
Q 039300          152 NKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNG------ATPLHLAAENGE--LKVLKLLINKYPDA  223 (534)
Q Consensus       152 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g------~tpL~~A~~~g~--~~~v~~Ll~~~~~~  223 (534)
                       |.+++..|..|.||||+|+..|+.+++++|+++|+++. ..+..|      .||||.|+..|+  .++++.|++.|.+ 
T Consensus       166 -g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-  242 (480)
T PHA03100        166 -GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN-AGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-  242 (480)
T ss_pred             -CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc-CCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-
Confidence             36788889999999999999999999999999999866 566677      899999999999  9999999999998 


Q ss_pred             cccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300          224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       224 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~  299 (534)
                      ++.+|..|+||||+|+..|+.+++++|++.|++   ++.+|..|.||||+|+..++.+++++|+++ |++++..+.
T Consensus       243 in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad---~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~~  314 (480)
T PHA03100        243 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN---PNLVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTIIE  314 (480)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHHH
Confidence            899999999999999999999999999999986   899999999999999999999999999998 678876554

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-38  Score=328.06  Aligned_cols=271  Identities=20%  Similarity=0.225  Sum_probs=227.9

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      +|.||||.||+.|+.++|++|+++|+++|.             +|..|.||||+||..|+.++++.|++.+.+..   ..
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~-------------~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~   99 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQ-------------PDHRDLTPLHIICKEPNKLGMKEMIRSINKCS---VF   99 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCC-------------CCCCCCCHHHHHHHCccHhHHHHHHHHHhccc---cc
Confidence            367999999999999999999999998884             89999999999999999999999999876543   25


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .+.+|++.|+..++.+++++|+..+.......+    ...+......+..+           ..+++.+.+.|.+++..+
T Consensus       100 ~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~iv~~Ll~~gadin~~~  164 (477)
T PHA02878        100 YTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID----LVYIDKKSKDDIIE-----------AEITKLLLSYGADINMKD  164 (477)
T ss_pred             cchhhHHHHHHcCCHHHHHHHHhCcccCcccCc----HHHHhhccchhhHH-----------HHHHHHHHHcCCCCCccC
Confidence            678999999999999999999988654211111    01111111111111           123344444557889999


Q ss_pred             CC-CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300          161 WH-QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA  239 (534)
Q Consensus       161 ~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  239 (534)
                      .. |.||||+|+..|+.+++++|++.|+++. ..|..|.||||.|++.|+.++++.|++.|++ ++.+|..|+||||+|+
T Consensus       165 ~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~  242 (477)
T PHA02878        165 RHKGNTALHYATENKDQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISV  242 (477)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence            88 9999999999999999999999999865 7889999999999999999999999999999 8999999999999999


Q ss_pred             hc-CCHHHHHHHHhCCcccccccccCC-CCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          240 KH-GNWNIVSFILKSPEMENLINLIDR-NGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       240 ~~-~~~~~~~~Ll~~~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      .. ++.+++++|+++|++   +|.++. .|.||||+|  .++.+++++|+++ |+|++..|.  .|.|||++|..
T Consensus       243 ~~~~~~~iv~~Ll~~gad---vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~--~g~TpL~~A~~  309 (477)
T PHA02878        243 GYCKDYDILKLLLEHGVD---VNAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNS--YKLTPLSSAVK  309 (477)
T ss_pred             HhcCCHHHHHHHHHcCCC---CCccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHHHH
Confidence            76 789999999999987   888875 899999999  5678999999998 899999999  99999999986

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-38  Score=321.77  Aligned_cols=263  Identities=22%  Similarity=0.306  Sum_probs=230.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC-----
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS-----   75 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~-----   75 (534)
                      .|.||||.|++.|+.++|++|++.|++++.             .+..|.||||.|+..|+.+++++|+++|++..     
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~-------------~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~  100 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINH-------------INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIP  100 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhc
Confidence            378999999999999999999999999874             78889999999999999999999999886531     


Q ss_pred             -----------------cCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhh
Q 039300           76 -----------------SYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQF  138 (534)
Q Consensus        76 -----------------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~  138 (534)
                                       +..+..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||.|+..++.++      
T Consensus       101 ~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~-~g~tpLh~A~~~~~~~i------  172 (434)
T PHA02874        101 CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDD-NGCYPIHIAIKHNFFDI------  172 (434)
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCC-CCCCHHHHHHHCCcHHH------
Confidence                             34678899999999999999999999999987 566666 89999999999999998      


Q ss_pred             HHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHH
Q 039300          139 LQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN  218 (534)
Q Consensus       139 ~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  218 (534)
                         ++.|++.    +..++..+..|.||||+|+..|+.+++++|++.|+++. .++..|.||||.|+..+. +.+++|+ 
T Consensus       173 ---v~~Ll~~----g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~-~~~~~g~TpL~~A~~~~~-~~i~~Ll-  242 (434)
T PHA02874        173 ---IKLLLEK----GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM-NKCKNGFTPLHNAIIHNR-SAIELLI-  242 (434)
T ss_pred             ---HHHHHHC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHCCh-HHHHHHH-
Confidence               7777765    35678889999999999999999999999999999865 678899999999999875 5666666 


Q ss_pred             hCCCccccccCCCCcHHHHHHhcC-CHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC-ChhHHHHhhhCcccchhh
Q 039300          219 KYPDAIEIRDNSDRSILHVAAKHG-NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL-HSDVVFTLSRHKSVNIRA  296 (534)
Q Consensus       219 ~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~~~~~~  296 (534)
                      .+.+ ++.+|..|+||||+|+..+ +.+++++|+++|++   ++.+|..|+||||+|+..+ ..++++.|+.. ++.++.
T Consensus       243 ~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad---~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~  317 (434)
T PHA02874        243 NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD---ISIKDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKE  317 (434)
T ss_pred             cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC---CCCCCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhh
Confidence            5666 8899999999999999876 78999999999887   8999999999999999987 66788999887 455544


Q ss_pred             ccc
Q 039300          297 KNR  299 (534)
Q Consensus       297 ~n~  299 (534)
                      .+.
T Consensus       318 ~~~  320 (434)
T PHA02874        318 ADK  320 (434)
T ss_pred             ccc
Confidence            444

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-38  Score=328.40  Aligned_cols=297  Identities=21%  Similarity=0.219  Sum_probs=247.4

Q ss_pred             CCCCHHHHHHhcC---CHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhC-cHHHHHHHHHcCCCCCc
Q 039300            1 MDETPLHIAARIG---DHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKK-HKRVIRILVEKDSAPSS   76 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g---~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g-~~e~v~~Ll~~g~~~~~   76 (534)
                      .|.||||+|+..|   +.++++.|+++|+++|.             +|..|.||||+|+.+| +.+++++|+++|++++ 
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~-------------~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-  111 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA-------------PERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-  111 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCC-------------CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-
Confidence            4899999999999   99999999999999884             7889999999999999 5999999999999985 


Q ss_pred             CCccCCCcHHHHHH--HcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC--cchhhhhhhHHHHHHHHHHhCCC
Q 039300           77 YINKAYQTPLSIAI--DVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQN--YDLSKSMQFLQFIDIMVKILGTN  152 (534)
Q Consensus        77 ~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~~~~~~~~~~ll~~~~~~  152 (534)
                      ..|..|.||||+|+  ..++.+++++|++.|++ ++..+. .|.||||.|+..++  .++         ++.+++.    
T Consensus       112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~-~g~tpL~~a~~~~~~~~~i---------v~~Ll~~----  176 (471)
T PHA03095        112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDL-YGMTPLAVLLKSRNANVEL---------LRLLIDA----  176 (471)
T ss_pred             CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCC-CCCCHHHHHHHcCCCCHHH---------HHHHHHc----
Confidence            67899999999999  55689999999999998 566666 89999999998774  344         5555554    


Q ss_pred             hhhhhcccCCCCcHHHHHHhC--CCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcH--HHHHHHHHhCCCcccccc
Q 039300          153 KDLINRLDWHQRNPLHYAAAS--GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL--KVLKLLINKYPDAIEIRD  228 (534)
Q Consensus       153 ~~~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~--~~v~~Ll~~~~~~~~~~d  228 (534)
                      +..++..|..|.||||+++..  ++.++++.|++.|+++. .+|..|.||||+|+..|+.  .+++.|++.+.+ ++.+|
T Consensus       177 g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~-~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d  254 (471)
T PHA03095        177 GADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA-ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-INARN  254 (471)
T ss_pred             CCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcC
Confidence            456677799999999999874  78999999999999865 7899999999999999875  688899999988 89999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHH
Q 039300          229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLE  308 (534)
Q Consensus       229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~  308 (534)
                      ..|+||||+|+..|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.++++.|++. +.+++....  ...+...
T Consensus       255 ~~g~TpLh~A~~~~~~~~v~~LL~~gad---~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~-~~~~~~~~~--~~~~~~~  328 (471)
T PHA03095        255 RYGQTPLHYAAVFNNPRACRRLIALGAD---INAVSSDGNTPLSLMVRNNNGRAVRAALAK-NPSAETVAA--TLNTASV  328 (471)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCHHHHHH--HHHHHhh
Confidence            9999999999999999999999999987   899999999999999999999999999998 567765544  2222222


Q ss_pred             HhHhhhhchHHHHHHhHHHHHHHHhhhcc
Q 039300          309 IDEMTRADVTEVQKHLTLKALKTAYAKRA  337 (534)
Q Consensus       309 ~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  337 (534)
                      .. .  .......+..+.+.+...|....
T Consensus       329 ~~-~--~~~~~~~~~~i~~~~~~~~~~~~  354 (471)
T PHA03095        329 AG-G--DIPSDATRLCVAKVVLRGAFSLL  354 (471)
T ss_pred             cc-C--CCccHHHHHHHHHHHHhcchhhc
Confidence            22 0  01112334555566665565543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.4e-38  Score=325.71  Aligned_cols=282  Identities=21%  Similarity=0.266  Sum_probs=253.6

Q ss_pred             CCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHH----
Q 039300           13 GDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSI----   88 (534)
Q Consensus        13 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~----   88 (534)
                      ...++++++++.+-.             .+..+..|.||||.|+..|+.++|++|+++|+++. ..+..+.||||+    
T Consensus        13 ~~~~~~~~~~~~~~~-------------~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~-~~~~~~~t~L~~~~~~   78 (480)
T PHA03100         13 IKVKNIKYIIMEDDL-------------NDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN-SSTKNNSTPLHYLSNI   78 (480)
T ss_pred             HHHHHHHHHHhcCcc-------------chhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC-CccccCcCHHHHHHHH
Confidence            345778888876522             22478899999999999999999999999999885 568889999999    


Q ss_pred             -HHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHH--HhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCc
Q 039300           89 -AIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFV--MRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN  165 (534)
Q Consensus        89 -A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~t  165 (534)
                       |+..++.+++++|+++|++. +..+. .|.||||.|+  ..++.++         ++.+++.    +.+++..+..|.|
T Consensus        79 ~a~~~~~~~iv~~Ll~~ga~i-~~~d~-~g~tpL~~A~~~~~~~~~i---------v~~Ll~~----g~~~~~~~~~g~t  143 (480)
T PHA03100         79 KYNLTDVKEIVKLLLEYGANV-NAPDN-NGITPLLYAISKKSNSYSI---------VEYLLDN----GANVNIKNSDGEN  143 (480)
T ss_pred             HHHhhchHHHHHHHHHCCCCC-CCCCC-CCCchhhHHHhcccChHHH---------HHHHHHc----CCCCCccCCCCCc
Confidence             99999999999999999984 66666 8999999999  9999988         7777765    3678889999999


Q ss_pred             HHHHHHhCC--CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCC------CcHHHH
Q 039300          166 PLHYAAASG--NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSD------RSILHV  237 (534)
Q Consensus       166 pL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g------~t~Lh~  237 (534)
                      |||+|+..|  +.+++++|+++|+++. ..|..|.||||.|+..|+.+++++|+++|++ ++..+..|      .||||.
T Consensus       144 ~L~~A~~~~~~~~~iv~~Ll~~g~din-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~  221 (480)
T PHA03100        144 LLHLYLESNKIDLKILKLLIDKGVDIN-AKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHI  221 (480)
T ss_pred             HHHHHHHcCCChHHHHHHHHHCCCCcc-cccCCCCCHHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHH
Confidence            999999999  9999999999999865 6777999999999999999999999999998 78888888      899999


Q ss_pred             HHhcCC--HHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhh
Q 039300          238 AAKHGN--WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRA  315 (534)
Q Consensus       238 A~~~~~--~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~  315 (534)
                      |+..++  .+++++|++.|++   +|.+|..|.||||+|+..++.+++++|++. |+|++.+|.  .|.||+++|..   
T Consensus       222 a~~~~~~~~~iv~~Ll~~g~d---in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-gad~n~~d~--~g~tpl~~A~~---  292 (480)
T PHA03100        222 AACYNEITLEVVNYLLSYGVP---INIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNK--YGDTPLHIAIL---  292 (480)
T ss_pred             HHHhCcCcHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCC--CCCcHHHHHHH---
Confidence            999999  9999999999887   899999999999999999999999999998 789999999  99999999997   


Q ss_pred             chHHHHHHhHHHHHHHHhhhccC
Q 039300          316 DVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       316 ~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                          .....+++.|++.|++...
T Consensus       293 ----~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        293 ----NNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             ----hCCHHHHHHHHhcCCCHHH
Confidence                5567899999999986543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=309.19  Aligned_cols=245  Identities=19%  Similarity=0.244  Sum_probs=194.0

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      +++++||.|++.|+.+++++|+++|++++.             ++..|.||||+|+..|+.+++++|+++|+++. ..+.
T Consensus         1 ~~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~-------------~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~   66 (413)
T PHA02875          1 MDQVALCDAILFGELDIARRLLDIGINPNF-------------EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYP   66 (413)
T ss_pred             CCchHHHHHHHhCCHHHHHHHHHCCCCCCc-------------cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-ccCC
Confidence            478999999999999999999999998873             77889999999999999999999999998774 5577


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      ++.||||.|+..|+.+++++|++.++...+                                               ..+
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----------------------------------------------~~~   99 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADD-----------------------------------------------VFY   99 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccc-----------------------------------------------ccc
Confidence            889999999999999999999998765211                                               123


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      .+|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.++++.|++++++ ++.+|..|+||||+|+.
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~  177 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMA  177 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHH
Confidence            346777777777788888888888877654 5677778888888888888888888877776 67777788888888888


Q ss_pred             cCCHHHHHHHHhCCcccccccccCCCCC-cHHHHHHhcCChhHHHHhhhCcccchhhccc-cCCCCChHHHhHh
Q 039300          241 HGNWNIVSFILKSPEMENLINLIDRNGN-TSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR-SARNNTTLEIDEM  312 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~-t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~-~~~g~t~l~~a~~  312 (534)
                      .|+.+++++|++.|++   ++..+..|. ||+|+|+..++.+++++|+++ |+|++..+. +.++.||+++...
T Consensus       178 ~g~~eiv~~Ll~~ga~---~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        178 KGDIAICKMLLDSGAN---IDYFGKNGCVAALCYAIENNKIDIVRLFIKR-GADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             cCCHHHHHHHHhCCCC---CCcCCCCCCchHHHHHHHcCCHHHHHHHHHC-CcCcchHhhcCCCchHHHHHHHh
Confidence            8888888888887776   666666664 677778888888888888877 677765521 1267778777653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=286.04  Aligned_cols=214  Identities=14%  Similarity=0.116  Sum_probs=125.6

Q ss_pred             cCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHH
Q 039300           12 IGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAID   91 (534)
Q Consensus        12 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~   91 (534)
                      .++.+++++|+++|++               .+|.+|.||||+|+.+|+.+++++|++.|+++..   .+|.||||+|+.
T Consensus         9 ~~~~~~~~~Lis~~a~---------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~---~d~~TpLh~Aa~   70 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAAT   70 (284)
T ss_pred             cCHHHHHHHHHhCCCC---------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC---CCCCCHHHHHHH
Confidence            4678899999998764               3788999999999999999999999999987652   246899999999


Q ss_pred             cCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCC-cHHHHH
Q 039300           92 VRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR-NPLHYA  170 (534)
Q Consensus        92 ~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~-tpL~~A  170 (534)
                      .|+.+++++|+++|++ ++..+. .|.||||+|+..++.++         ++.|++..    .+++..+..|+ ||||+|
T Consensus        71 ~g~~eiV~lLL~~Gad-vn~~d~-~G~TpLh~Aa~~g~~ei---------vk~Ll~~g----adin~~~~~g~~TpL~~A  135 (284)
T PHA02791         71 LEDTKIVKILLFSGMD-DSQFDD-KGNTALYYAVDSGNMQT---------VKLFVKKN----WRLMFYGKTGWKTSFYHA  135 (284)
T ss_pred             CCCHHHHHHHHHCCCC-CCCCCC-CCCCHHHHHHHcCCHHH---------HHHHHHCC----CCcCccCCCCCcHHHHHH
Confidence            9999999999988876 333333 44444444444444444         33333321    23333343332 444444


Q ss_pred             HhCCCHHHHHHHHhhchhhhcccC-CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcH-HHHHHhcCCHHHHH
Q 039300          171 AASGNVQMVQRLLEASKQLAYKRD-CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI-LHVAAKHGNWNIVS  248 (534)
Q Consensus       171 ~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~  248 (534)
                      +..|+.+++++|++++++..   | ..|.||||+|+++|+.++++.|++++++ ++.+|..|.|| ||+|+.+|+.++++
T Consensus       136 a~~g~~eivk~LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~  211 (284)
T PHA02791        136 VMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQ  211 (284)
T ss_pred             HHcCCHHHHHHHHhcCCccc---ccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHH
Confidence            44444444444444433211   1 1244444444444444444444444444 44444444443 44444444444444


Q ss_pred             HHHhCCcccccccccCC
Q 039300          249 FILKSPEMENLINLIDR  265 (534)
Q Consensus       249 ~Ll~~~~~~~~~~~~d~  265 (534)
                      +|+++|++   +|.+|.
T Consensus       212 lLl~~Ga~---in~~~~  225 (284)
T PHA02791        212 ALFKYDIN---IYSVNL  225 (284)
T ss_pred             HHHHCCCC---CccCcc
Confidence            44444443   444444

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-36  Score=309.93  Aligned_cols=312  Identities=17%  Similarity=0.120  Sum_probs=224.9

Q ss_pred             CCCCHHHHHHhcC---CHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhC--cHHHHHHHHHcCCCCC
Q 039300            1 MDETPLHIAARIG---DHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKK--HKRVIRILVEKDSAPS   75 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g---~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g--~~e~v~~Ll~~g~~~~   75 (534)
                      .|+||||+|+..|   +.++|++|+++||+++.             +|..|.||||+|+..+  +.|+|++|++.|++..
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~-------------kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~  106 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC-------------RNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNAS  106 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc-------------cCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCC
Confidence            4899999999997   59999999999999884             8999999999999976  7999999999965431


Q ss_pred             -cCCccCCCcHHHHHHH--cCcHHHHHHHHhcCCCCcccCC----CCCCchHHHHHHHhcCcchhhhhh-----------
Q 039300           76 -SYINKAYQTPLSIAID--VRLNDIACFIIDKSSESLNATR----LPDELTLLHFFVMRQNYDLSKSMQ-----------  137 (534)
Q Consensus        76 -~~~~~~g~tpL~~A~~--~g~~~iv~~Ll~~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~~~~~-----------  137 (534)
                       +..+..+.+||+.++.  +++.+++++|++.+...++...    ...|.+|++.+...++.++.+.+-           
T Consensus       107 ~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~  186 (672)
T PHA02730        107 NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVF  186 (672)
T ss_pred             cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccc
Confidence             1234446666666665  6666666666653322122221    114556666666655555532210           


Q ss_pred             -----------------------hHHHHHHHHHHhCCChhhhhcccCCCCcHHHH--HHhCCCHHHHHHHHh--------
Q 039300          138 -----------------------FLQFIDIMVKILGTNKDLINRLDWHQRNPLHY--AAASGNVQMVQRLLE--------  184 (534)
Q Consensus       138 -----------------------~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~--A~~~g~~~~v~~Ll~--------  184 (534)
                                             .......+++.+...|+++|.+|..|.||||+  +...|+.|++++|++        
T Consensus       187 ~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~  266 (672)
T PHA02730        187 RSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVY  266 (672)
T ss_pred             ccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccc
Confidence                                   00002344555556667888889999999985  445667899999998        


Q ss_pred             ------------------------hchhhhc-------------------ccCCCCCc---------------------H
Q 039300          185 ------------------------ASKQLAY-------------------KRDCNGAT---------------------P  200 (534)
Q Consensus       185 ------------------------~~~~~~~-------------------~~~~~g~t---------------------p  200 (534)
                                              .|++..-                   ..+..|.+                     .
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~  346 (672)
T PHA02730        267 DDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAM  346 (672)
T ss_pred             ccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHH
Confidence                                    5655421                   03445544                     5


Q ss_pred             HHHHHHcC---cHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC----HHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300          201 LHLAAENG---ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN----WNIVSFILKSPEMENLINLIDRNGNTSLHL  273 (534)
Q Consensus       201 L~~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~  273 (534)
                      ||.-.+.+   +.+++++|+++|++ ++.. ..|+||||+|+..++    .+++++|+++|+. ..+|.+|.+|.||||.
T Consensus       347 l~~Y~~~~~~v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~-~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        347 LINYLHYGDMVSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGH-MAINHVSNNGRLCMYG  423 (672)
T ss_pred             HHHHHhcCCcCcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCC-ccccccccCCCchHhH
Confidence            66666655   58899999999988 7764 789999999988875    8999999999862 2378999999999984


Q ss_pred             ---HHhcC---------ChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          274 ---AAMGL---------HSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       274 ---A~~~~---------~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                         |...+         ..+++++|+++ |+|+|.+|.  .|+|||++|..       ....+++++|+++|++.+.
T Consensus       424 ~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADINakD~--~G~TPLh~Aa~-------~~~~eive~LI~~GAdIN~  490 (672)
T PHA02730        424 LILSRFNNCGYHCYETILIDVFDILSKY-MDDIDMIDN--ENKTLLYYAVD-------VNNIQFARRLLEYGASVNT  490 (672)
T ss_pred             HHHHHhccccccccchhHHHHHHHHHhc-ccchhccCC--CCCCHHHHHHH-------hCCHHHHHHHHHCCCCCCC
Confidence               33332         12468999998 899999999  99999999987       4567889999999998765

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.9e-36  Score=313.63  Aligned_cols=189  Identities=14%  Similarity=0.131  Sum_probs=131.0

Q ss_pred             CCCCHHHHHHhc---CCHHHHHHHHhcCccccccCch---h---------------hhhhhhcc---cCCC-CCcHhHHH
Q 039300            1 MDETPLHIAARI---GDHAIVSEIMKYVPAVNQAGSA---S---------------VLETLFGM---RDIE-GNTPLHNV   55 (534)
Q Consensus         1 ~G~T~Lh~Aa~~---g~~~~v~~Ll~~g~~~~~~~~~---~---------------~~~~~l~~---~d~~-g~TpLh~A   55 (534)
                      .|+||||+||..   |+.++|++|+++|++++.....   +               ..+.++..   .+.. ..+++|.|
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a  110 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMK  110 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHH
Confidence            489999998666   8899999999999998742110   0               00111110   0111 12444455


Q ss_pred             HHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHH--HcCcHHHHHHHHhcCCCCcccCC---C----------CCCchH
Q 039300           56 VTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAI--DVRLNDIACFIIDKSSESLNATR---L----------PDELTL  120 (534)
Q Consensus        56 ~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~---~----------~~g~t~  120 (534)
                      +.+|+.|+|++|+++|++++ ..|..|.||||.|+  ..|+.+++++|+++|++. +..+   .          +.+.||
T Consensus       111 ~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~  188 (661)
T PHA02917        111 SKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTV  188 (661)
T ss_pred             hhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccH
Confidence            56667888999999998886 67889999999654  578999999999999983 3222   1          123699


Q ss_pred             HHHHHH-----------hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCH--HHHHHHHhhch
Q 039300          121 LHFFVM-----------RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV--QMVQRLLEASK  187 (534)
Q Consensus       121 L~~A~~-----------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~--~~v~~Ll~~~~  187 (534)
                      ||+|+.           +++.++         ++.|++.    |.+++..|.+|.||||+|+..|+.  +++++|++ |+
T Consensus       189 L~~a~~~~~~~~~~~~~~~~~ei---------v~~Li~~----Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        189 LHLYIISHLYSESDTRAYVRPEV---------VKCLINH----GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             HHHHHhhcccccccccccCcHHH---------HHHHHHC----CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence            999986           335555         5555554    578999999999999999999984  79999875 66


Q ss_pred             hhh---cccCCCCCcHHHHHH
Q 039300          188 QLA---YKRDCNGATPLHLAA  205 (534)
Q Consensus       188 ~~~---~~~~~~g~tpL~~A~  205 (534)
                      +..   ...|..|.+|+|+|+
T Consensus       255 d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        255 DNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             cccccccccCcccccchHHHH
Confidence            443   123445555555555

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.4e-35  Score=308.76  Aligned_cols=287  Identities=18%  Similarity=0.150  Sum_probs=234.9

Q ss_pred             CCCCHHHHHHh--cCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCc--HHHHHHHHHcCCCCCc
Q 039300            1 MDETPLHIAAR--IGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH--KRVIRILVEKDSAPSS   76 (534)
Q Consensus         1 ~G~T~Lh~Aa~--~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~--~e~v~~Ll~~g~~~~~   76 (534)
                      .|.||||.|+.  .++.+++++|+++|+++|.             +|..|.||||+|+++|+  .++|++|+++|++++ 
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~-------------kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN-  241 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNL-------------QNNHLITPLHTYLITGNVCASVIKKIIELGGDMD-  241 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC-------------CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCC-
Confidence            38999999875  4689999999999999884             89999999999999995  599999999999985 


Q ss_pred             CCccCCCcHHHHH-------------------------------------HHcCcHHHHHHHHhcCCCCcccCCCCCCch
Q 039300           77 YINKAYQTPLSIA-------------------------------------IDVRLNDIACFIIDKSSESLNATRLPDELT  119 (534)
Q Consensus        77 ~~~~~g~tpL~~A-------------------------------------~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t  119 (534)
                      ..|..|.||||.|                                     +..|+.+++++|+++|++ ++..+. .|+|
T Consensus       242 ~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~-~G~T  319 (764)
T PHA02716        242 MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDS-AGRT  319 (764)
T ss_pred             CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCC-CCCC
Confidence            6799999999975                                     345788999999999997 677776 9999


Q ss_pred             HHHHHHHh--cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHh--------------CCCHHHHHHHH
Q 039300          120 LLHFFVMR--QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAA--------------SGNVQMVQRLL  183 (534)
Q Consensus       120 ~L~~A~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~--------------~g~~~~v~~Ll  183 (534)
                      |||.|+..  ++.++         ++.|++.    |.+++.+|..|+||||+|+.              .++.+++++|+
T Consensus       320 PLH~Aaa~~~~~~eI---------VklLLe~----GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL  386 (764)
T PHA02716        320 CLHQYILRHNISTDI---------IKLLHEY----GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLI  386 (764)
T ss_pred             HHHHHHHHhCCCchH---------HHHHHHc----CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHH
Confidence            99998754  46677         7777654    47889999999999999875              36899999999


Q ss_pred             hhchhhhcccCCCCCcHHHH----HHHcCcHHHHHHHHHhCCC-------------------------------------
Q 039300          184 EASKQLAYKRDCNGATPLHL----AAENGELKVLKLLINKYPD-------------------------------------  222 (534)
Q Consensus       184 ~~~~~~~~~~~~~g~tpL~~----A~~~g~~~~v~~Ll~~~~~-------------------------------------  222 (534)
                      ++|+++. .+|..|.||||.    |...++.++++.|++.+..                                     
T Consensus       387 ~~GADIn-~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~  465 (764)
T PHA02716        387 SLGADIT-AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYT  465 (764)
T ss_pred             HCCCCCC-CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhh
Confidence            9999865 789999999994    2335778999988875321                                     


Q ss_pred             -----------------------ccccccCCCCcHHHHHHhcCCH-----HHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300          223 -----------------------AIEIRDNSDRSILHVAAKHGNW-----NIVSFILKSPEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       223 -----------------------~~~~~d~~g~t~Lh~A~~~~~~-----~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                                             .++..|..|+||||+|+..|+.     +++++|++.|++   +|.+|++|+||||+|
T Consensus       466 ~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD---IN~~d~~G~TPLh~A  542 (764)
T PHA02716        466 DEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN---INIPTKNGVTPLMLT  542 (764)
T ss_pred             hhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC---CcccCCCCCCHHHHH
Confidence                                   0234577899999999999877     455999999988   999999999999999


Q ss_pred             HhcCCh-----hHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300          275 AMGLHS-----DVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       275 ~~~~~~-----~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                      +++|+.     ++++.|+++ |++++..        .+.++..       ..+..+..+|..+++..
T Consensus       543 ~~~g~~~~~~~eIvk~LL~~-ga~~~~~--------~l~~~~~-------~~~~~~~~ll~~~~~~~  593 (764)
T PHA02716        543 MRNNRLSGHQWYIVKNILDK-RPNVDIV--------IIFLDKC-------YANGKFPSLLLSEDDII  593 (764)
T ss_pred             HHcCCccccHHHHHHHHHhc-CCCcchH--------HHHHHhh-------hhhhHHHHHHHHcchhH
Confidence            999976     999999997 6665543        3566654       44566677777776643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-35  Score=306.38  Aligned_cols=284  Identities=20%  Similarity=0.262  Sum_probs=236.6

Q ss_pred             HHHHHHh---cCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHh--CcHHHHHHHHHcCCCCCcCCc
Q 039300            5 PLHIAAR---IGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTK--KHKRVIRILVEKDSAPSSYIN   79 (534)
Q Consensus         5 ~Lh~Aa~---~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~--g~~e~v~~Ll~~g~~~~~~~~   79 (534)
                      +||--+.   ..+.++|++|+++|+++|.             + ..|.||||.++..  ++.++|++|+++|++++ ..+
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~GadvN~-------------~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn-~~~   67 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRTGFDVNE-------------E-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVN-YKG   67 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHcCCCccc-------------c-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCcc-CCC
Confidence            4554333   5789999999999999884             4 5689999876654  37999999999999986 334


Q ss_pred             cCCCcHHHHHHHcC------cHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh---cCcchhhhhhhHHHHHHHHHHhC
Q 039300           80 KAYQTPLSIAIDVR------LNDIACFIIDKSSESLNATRLPDELTLLHFFVMR---QNYDLSKSMQFLQFIDIMVKILG  150 (534)
Q Consensus        80 ~~g~tpL~~A~~~g------~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~~~~~~~~~~ll~~~~  150 (534)
                       .+.||||.|+.++      +.+++++|+++|++ ++..+. .|.||||.|+..   ++.++         ++.|++.  
T Consensus        68 -~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~-~g~tpL~~a~~~~~~~~~ei---------v~~Ll~~--  133 (494)
T PHA02989         68 -YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD-INLKTF-NGVSPIVCFIYNSNINNCDM---------LRFLLSK--  133 (494)
T ss_pred             -CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC-CCCCCC-CCCcHHHHHHHhcccCcHHH---------HHHHHHC--
Confidence             5789999998654      57899999999998 677776 899999998876   45566         6666654  


Q ss_pred             CChhhh-hcccCCCCcHHHHHHhC--CCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcC----cHHHHHHHHHhCCCc
Q 039300          151 TNKDLI-NRLDWHQRNPLHYAAAS--GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG----ELKVLKLLINKYPDA  223 (534)
Q Consensus       151 ~~~~~~-~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g----~~~~v~~Ll~~~~~~  223 (534)
                        |.++ +..|..|+||||+|+..  ++.+++++|+++|+++....+..|.||||.|+..+    +.+++++|+++|++ 
T Consensus       134 --Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-  210 (494)
T PHA02989        134 --GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-  210 (494)
T ss_pred             --CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-
Confidence              4778 78899999999998764  68999999999999876446789999999998764    89999999999999 


Q ss_pred             cccccCCCCcHHHHHHhcC------CHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhc
Q 039300          224 IEIRDNSDRSILHVAAKHG------NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAK  297 (534)
Q Consensus       224 ~~~~d~~g~t~Lh~A~~~~------~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~  297 (534)
                      ++.+|..|.|+||.++..+      ..+++++|+. +++   +|.+|..|+||||+|+..++.+++++|++. |+|++.+
T Consensus       211 vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad---vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~-Gadin~~  285 (494)
T PHA02989        211 IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK---INKKDKKGFNPLLISAKVDNYEAFNYLLKL-GDDIYNV  285 (494)
T ss_pred             ccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC---CCCCCCCCCCHHHHHHHhcCHHHHHHHHHc-CCCcccc
Confidence            8889999999999877643      5678887765 455   999999999999999999999999999998 8999999


Q ss_pred             cccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhh
Q 039300          298 NRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYA  334 (534)
Q Consensus       298 n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga  334 (534)
                      |.  .|.|||++|..       ....++++.|++.+.
T Consensus       286 d~--~G~TpL~~A~~-------~~~~~iv~~LL~~~p  313 (494)
T PHA02989        286 SK--DGDTVLTYAIK-------HGNIDMLNRILQLKP  313 (494)
T ss_pred             CC--CCCCHHHHHHH-------cCCHHHHHHHHhcCC
Confidence            99  99999999998       445677788877653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=279.44  Aligned_cols=213  Identities=18%  Similarity=0.202  Sum_probs=186.8

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||+|+..|+.++++.|+++|++++.             +  +|.||||+|+..|+.++|++|++.|+++. ..|.
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-------------~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn-~~d~   92 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVCTLLNAGALKNL-------------L--ENEFPLHQAATLEDTKIVKILLFSGMDDS-QFDD   92 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCcCCCcC-------------C--CCCCHHHHHHHCCCHHHHHHHHHCCCCCC-CCCC
Confidence            489999999999999999999999988662             2  36899999999999999999999998885 6799


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC-chHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE-LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL  159 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  159 (534)
                      .|.||||+|+..|+.+++++|++++++ ++..+. .| .||||+|+..++.++         ++.|++..+   .   ..
T Consensus        93 ~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~-~g~~TpL~~Aa~~g~~ei---------vk~LL~~~~---~---~~  155 (284)
T PHA02791         93 KGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGK-TGWKTSFYHAVMLNDVSI---------VSYFLSEIP---S---TF  155 (284)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCC-CCCcHHHHHHHHcCCHHH---------HHHHHhcCC---c---cc
Confidence            999999999999999999999999987 455555 55 699999999999999         888887643   1   12


Q ss_pred             c-CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcH-HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300          160 D-WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP-LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV  237 (534)
Q Consensus       160 d-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  237 (534)
                      | ..|.||||+|+..|+.+++++|+++|+++. .+|..|.|| ||+|+..|+.+++++|+++|++ ++.+|..| ++|  
T Consensus       156 d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n-~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l--  230 (284)
T PHA02791        156 DLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL--  230 (284)
T ss_pred             ccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-cccCCCCChHHHHHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC--
Confidence            2 258999999999999999999999999865 678888877 9999999999999999999999 89898854 555  


Q ss_pred             HHhcCCHHHHHHHHhCCc
Q 039300          238 AAKHGNWNIVSFILKSPE  255 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~  255 (534)
                          ++.|++++|+++..
T Consensus       231 ----~~~e~~~~ll~~~~  244 (284)
T PHA02791        231 ----DDAEIAKMIIEKHV  244 (284)
T ss_pred             ----CCHHHHHHHHHhhh
Confidence                88999999998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=275.10  Aligned_cols=195  Identities=25%  Similarity=0.373  Sum_probs=170.7

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHh-cCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMK-YVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYIN   79 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~   79 (534)
                      .|.|||-+||++||.++|++|++ .++++...+....     +-...+|-+||-.|+..||.++|+.|+++|++++. ..
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~F-----Dge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~-tT  114 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRF-----DGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND-TT  114 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEe-----CCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc-cc
Confidence            37899999999999999999999 4566554333321     12356789999999999999999999999988864 45


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc
Q 039300           80 KAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL  159 (534)
Q Consensus        80 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  159 (534)
                      ....|||--||..|+.++|++|++++++ ++..+. .|.|.|+.|+..|+.++         ++++++..    .++|.+
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad-~~Ianr-hGhTcLmIa~ykGh~~I---------~qyLle~g----ADvn~k  179 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANR-HGHTCLMIACYKGHVDI---------AQYLLEQG----ADVNAK  179 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCC-Cccccc-CCCeeEEeeeccCchHH---------HHHHHHhC----CCcchh
Confidence            5667999999999999999999999998 666666 99999999999999999         88888764    789999


Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHH
Q 039300          160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN  218 (534)
Q Consensus       160 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  218 (534)
                      +..|+|+||.++..|+.+++++|+++|+.+  .+|..|.|||..|+..|+.++|+.|++
T Consensus       180 s~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  180 SYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999999999999999999976  478889999999999999999999994

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=296.89  Aligned_cols=254  Identities=18%  Similarity=0.247  Sum_probs=216.0

Q ss_pred             CCCCHHHHHHhc--CCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhC------cHHHHHHHHHcCC
Q 039300            1 MDETPLHIAARI--GDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKK------HKRVIRILVEKDS   72 (534)
Q Consensus         1 ~G~T~Lh~Aa~~--g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g------~~e~v~~Ll~~g~   72 (534)
                      .|.||||.++..  ++.++|+.|+++|+++|.             ++ .+.||||.|+.++      +.++|++|+++|+
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~-------------~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Ga   99 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNY-------------KG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGA   99 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccC-------------CC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCC
Confidence            388999876654  378999999999999884             33 5799999998754      5789999999999


Q ss_pred             CCCcCCccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh--cCcchhhhhhhHHHHHHHHH
Q 039300           73 APSSYINKAYQTPLSIAIDV---RLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR--QNYDLSKSMQFLQFIDIMVK  147 (534)
Q Consensus        73 ~~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~~~~~~~~~~ll~  147 (534)
                      +++ ..+..|.||||.|+..   ++.+++++|+++|++..+..+. .|.||||+|+..  ++.++         ++.|++
T Consensus       100 din-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~-~g~tpLh~a~~~~~~~~~i---------v~~Ll~  168 (494)
T PHA02989        100 DIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS-RGYNLLHMYLESFSVKKDV---------IKILLS  168 (494)
T ss_pred             CCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC-CCCCHHHHHHHhccCCHHH---------HHHHHH
Confidence            985 6789999999998765   6899999999999983256666 899999999865  45666         777776


Q ss_pred             HhCCChhhhhc-ccCCCCcHHHHHHhC----CCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc------CcHHHHHHH
Q 039300          148 ILGTNKDLINR-LDWHQRNPLHYAAAS----GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN------GELKVLKLL  216 (534)
Q Consensus       148 ~~~~~~~~~~~-~d~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~------g~~~~v~~L  216 (534)
                      ..    .+++. .+..|.||||.|+..    ++.+++++|++.|+++. ..|..+.||+|.++..      +..+++++|
T Consensus       169 ~G----adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn-~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l  243 (494)
T PHA02989        169 FG----VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE-TNNNGSESVLESFLDNNKILSKKEFKVLNFI  243 (494)
T ss_pred             cC----CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc-ccCCccccHHHHHHHhchhhcccchHHHHHH
Confidence            53    56666 678899999999775    48999999999999876 6677899999987764      356788876


Q ss_pred             HHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       217 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      ++ +++ ++.+|..|+||||+|+..|+.+++++|++.|++   +|.+|..|+||||+|+..++.++++.|++.
T Consensus       244 ~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad---in~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        244 LK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD---IYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             Hh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            65 566 899999999999999999999999999999987   999999999999999999999999999986

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-35  Score=241.48  Aligned_cols=210  Identities=26%  Similarity=0.343  Sum_probs=177.6

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc-CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK-AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFV  125 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~-~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~  125 (534)
                      .+.++.+.+++..-..-|+.+++..++..+.++. +|+||||+||..|+.+++++|++...                   
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~n-------------------   62 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPN-------------------   62 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCC-------------------
Confidence            3566777777777777777777776633333433 77777777777777777777776211                   


Q ss_pred             HhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhh-chhhhcccCCCCCcHHHHH
Q 039300          126 MRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHLA  204 (534)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A  204 (534)
                                                  ..+|..|..|+||||.|+..|+.++|+.|+.+ |++++ ..+..|.||||+|
T Consensus        63 ----------------------------v~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advn-a~tn~G~T~LHyA  113 (226)
T KOG4412|consen   63 ----------------------------VKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVN-ATTNGGQTCLHYA  113 (226)
T ss_pred             ----------------------------CCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcc-eecCCCcceehhh
Confidence                                        33566788899999999999999999999999 77655 7888999999999


Q ss_pred             HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHH
Q 039300          205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVF  284 (534)
Q Consensus       205 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  284 (534)
                      +..|..+++++|+++++. ++.+|..|+||||.|+.-|+.+++++|+..++.   +|.+|..|+||||.|..-|+.++..
T Consensus       114 agK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~a~---~n~qDk~G~TpL~~al~e~~~d~a~  189 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP---LNTQDKYGFTPLHHALAEGHPDVAV  189 (226)
T ss_pred             hcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcCCC---CCcccccCccHHHHHHhccCchHHH
Confidence            999999999999999977 999999999999999999999999999999876   9999999999999998889999999


Q ss_pred             HhhhCcccchhhccccCCCCChHHHhHh
Q 039300          285 TLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       285 ~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +|+++ |+|++..|+  +| ||+.+++.
T Consensus       190 lLV~~-gAd~~~edk--e~-t~~~~a~~  213 (226)
T KOG4412|consen  190 LLVRA-GADTDREDK--EG-TALRIACN  213 (226)
T ss_pred             HHHHh-ccceeeccc--cC-chHHHHHH
Confidence            99998 699999999  88 99988876

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.1e-34  Score=290.35  Aligned_cols=314  Identities=15%  Similarity=0.171  Sum_probs=236.3

Q ss_pred             CCCCHHHHHHhcC--CHHHHHHHHhcCccc--cccC----------------chhhhhhhhc-c-------cC----CCC
Q 039300            1 MDETPLHIAARIG--DHAIVSEIMKYVPAV--NQAG----------------SASVLETLFG-M-------RD----IEG   48 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g--~~~~v~~Ll~~g~~~--~~~~----------------~~~~~~~~l~-~-------~d----~~g   48 (534)
                      .|+||||+|+..|  +.|+|++|++.|++.  +...                .....+.++. .       .+    ..|
T Consensus        76 ~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~  155 (672)
T PHA02730         76 EGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLG  155 (672)
T ss_pred             CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccc
Confidence            4899999999977  799999999997644  2110                1112344552 1       11    378


Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCCCCcC------CccCCC-cHHHHH------HHcCcHHHHHHHHhcCCCCcccCCCC
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSAPSSY------INKAYQ-TPLSIA------IDVRLNDIACFIIDKSSESLNATRLP  115 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~------~~~~g~-tpL~~A------~~~g~~~iv~~Ll~~~~~~~~~~~~~  115 (534)
                      .+|+++|..+++.|+|++|+++|+++...      .+..+. |.||++      ...++.|++++|+++|++ ++..+. 
T Consensus       156 ~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~-  233 (672)
T PHA02730        156 LVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDE-  233 (672)
T ss_pred             hhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCC-
Confidence            99999999999999999999999998411      233344 444533      355789999999999997 688887 


Q ss_pred             CCchHHHH--HHHhcCcchhhhhhhHHHHHHHHH--------------------------Hh--CCChhhhhc-------
Q 039300          116 DELTLLHF--FVMRQNYDLSKSMQFLQFIDIMVK--------------------------IL--GTNKDLINR-------  158 (534)
Q Consensus       116 ~g~t~L~~--A~~~~~~~~~~~~~~~~~~~~ll~--------------------------~~--~~~~~~~~~-------  158 (534)
                      .|.||||+  +...++.|+         ++.|++                          ..  ...+.+...       
T Consensus       234 ~G~TpLh~~~~~~~~~~ei---------v~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  304 (672)
T PHA02730        234 GGSLPIQYYWSCSTIDIEI---------VKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEG  304 (672)
T ss_pred             CCCCHHHHHHHcCcccHHH---------HHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhc
Confidence            99999996  444556777         555555                          00  001122211       


Q ss_pred             -------------ccCCCCc---------------------HHHHHHhCC---CHHHHHHHHhhchhhhcccCCCCCcHH
Q 039300          159 -------------LDWHQRN---------------------PLHYAAASG---NVQMVQRLLEASKQLAYKRDCNGATPL  201 (534)
Q Consensus       159 -------------~d~~g~t---------------------pL~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~tpL  201 (534)
                                   .+..|.+                     .||.-...+   +.+++++|+++|++++ .. ..|.|||
T Consensus       305 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN-~k-~~G~TpL  382 (672)
T PHA02730        305 RHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMD-KT-TDNNYPL  382 (672)
T ss_pred             cCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCC-cC-CCCCcHH
Confidence                         4555544                     566666655   6999999999999987 33 6899999


Q ss_pred             HHHHHcCc----HHHHHHHHHhCCC-ccccccCCCCcHHHH---HHhcC---------CHHHHHHHHhCCcccccccccC
Q 039300          202 HLAAENGE----LKVLKLLINKYPD-AIEIRDNSDRSILHV---AAKHG---------NWNIVSFILKSPEMENLINLID  264 (534)
Q Consensus       202 ~~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~---A~~~~---------~~~~~~~Ll~~~~~~~~~~~~d  264 (534)
                      |.|+..++    .+++++|+++|++ .++.+|..|+||||.   |...+         ..+++++|+++|++   +|.+|
T Consensus       383 H~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD---INakD  459 (672)
T PHA02730        383 HDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD---IDMID  459 (672)
T ss_pred             HHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc---hhccC
Confidence            99998875    8999999999974 488999999999994   33332         23579999999988   99999


Q ss_pred             CCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhcc
Q 039300          265 RNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA  337 (534)
Q Consensus       265 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  337 (534)
                      ..|+||||+|+..++.+++++|+++ |++++.+|.. .|.||++.|....     ....++++.|+++|+...
T Consensus       460 ~~G~TPLh~Aa~~~~~eive~LI~~-GAdIN~~d~~-~g~TaL~~Aa~~~-----~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        460 NENKTLLYYAVDVNNIQFARRLLEY-GASVNTTSRS-IINTAIQKSSYRR-----ENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCc-CCcCHHHHHHHhh-----cCcHHHHHHHHHcCCCHH
Confidence            9999999999999999999999998 8999999961 4899999997510     135778999999987653

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=291.38  Aligned_cols=262  Identities=18%  Similarity=0.230  Sum_probs=219.5

Q ss_pred             CCCHHHHHHh--cCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHh-----CcHHHHHHHHHcCCCC
Q 039300            2 DETPLHIAAR--IGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTK-----KHKRVIRILVEKDSAP   74 (534)
Q Consensus         2 G~T~Lh~Aa~--~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~-----g~~e~v~~Ll~~g~~~   74 (534)
                      |.|+++.+..  .++.++|++|+++|+++|.             +|..|.||||.|+.+     ++.+++++|+++|+++
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~-------------~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi  102 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNG-------------LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI  102 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCCC-------------CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC
Confidence            5677765544  4479999999999999884             889999999999865     6799999999999997


Q ss_pred             CcCCccCCCcHHHHHHHcC---cHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC---cchhhhhhhHHHHHHHHHH
Q 039300           75 SSYINKAYQTPLSIAIDVR---LNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQN---YDLSKSMQFLQFIDIMVKI  148 (534)
Q Consensus        75 ~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~~~~~~~~~~ll~~  148 (534)
                      + ..|..|.||||+|+..+   +.+++++|+++|++ ++..+. .|.||||.|+..++   .++         ++.|++.
T Consensus       103 N-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~-~g~tpL~~a~~~~~~~~~~v---------v~~Ll~~  170 (489)
T PHA02798        103 N-KKNSDGETPLYCLLSNGYINNLEILLFMIENGAD-TTLLDK-DGFTMLQVYLQSNHHIDIEI---------IKLLLEK  170 (489)
T ss_pred             C-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCC-CCCcHHHHHHHcCCcchHHH---------HHHHHHh
Confidence            5 67889999999999875   78999999999998 677776 89999999999887   666         6666665


Q ss_pred             hCCChhhhhccc-CCCCcHHHHHHhC----CCHHHHHHHHhhchhhhcccCCCCCcHHH-------HHHHcCcHHHHHHH
Q 039300          149 LGTNKDLINRLD-WHQRNPLHYAAAS----GNVQMVQRLLEASKQLAYKRDCNGATPLH-------LAAENGELKVLKLL  216 (534)
Q Consensus       149 ~~~~~~~~~~~d-~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-------~A~~~g~~~~v~~L  216 (534)
                          |.+++..+ ..|.||||.++..    ++.+++++|+++|+++. ..+..|.++++       .+...++.+++++|
T Consensus       171 ----gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~-~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l  245 (489)
T PHA02798        171 ----GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN-KENKSHKKKFMEYLNSLLYDNKRFKKNILDFI  245 (489)
T ss_pred             ----CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc-cCCccccchHHHHHHHHHhhcccchHHHHHHH
Confidence                35666664 5789999988764    47999999999999865 56777888876       24456778888887


Q ss_pred             HHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhh
Q 039300          217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA  296 (534)
Q Consensus       217 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  296 (534)
                      +. +.+ ++.+|..|+||||+|+.+|+.+++++|++.|++   +|.+|..|+||||+|+..++.++++.|+++ +++++.
T Consensus       246 ~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd---in~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~  319 (489)
T PHA02798        246 FS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD---INIITELGNTCLFTAFENESKFIFNSILNK-KPNKNT  319 (489)
T ss_pred             Hh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc---ccccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHH
Confidence            65 566 899999999999999999999999999999987   899999999999999999999999999987 677765


Q ss_pred             ccc
Q 039300          297 KNR  299 (534)
Q Consensus       297 ~n~  299 (534)
                      ...
T Consensus       320 i~~  322 (489)
T PHA02798        320 ISY  322 (489)
T ss_pred             HHH
Confidence            544

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.5e-33  Score=289.11  Aligned_cols=288  Identities=16%  Similarity=0.186  Sum_probs=237.0

Q ss_pred             CHHHHHHhcC---CHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHH--hCcHHHHHHHHHcCCCCCcCC
Q 039300            4 TPLHIAARIG---DHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVT--KKHKRVIRILVEKDSAPSSYI   78 (534)
Q Consensus         4 T~Lh~Aa~~g---~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~--~g~~e~v~~Ll~~g~~~~~~~   78 (534)
                      .+||--+...   ..+.|+.|++.+. ++.              ...|.|+++.+..  .++.++|++|+++|++++ ..
T Consensus         4 ~~l~~y~~~~~~~~~~~v~~ll~~~~-~~~--------------~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn-~~   67 (489)
T PHA02798          4 DNLYNYITFSDNVKLSTVKLLIKSCN-PNE--------------IVNEYSIFQKYLQRDSPSTDIVKLFINLGANVN-GL   67 (489)
T ss_pred             hhhHHHeeecCcccHHHHHHHHhcCC-hhh--------------hcccchHHHHHHhCCCCCHHHHHHHHHCCCCCC-CC
Confidence            3455443332   4789999998753 331              2457787774443  458999999999999986 67


Q ss_pred             ccCCCcHHHHHHHc-----CcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC---cchhhhhhhHHHHHHHHHHhC
Q 039300           79 NKAYQTPLSIAIDV-----RLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQN---YDLSKSMQFLQFIDIMVKILG  150 (534)
Q Consensus        79 ~~~g~tpL~~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~~~~~~~~~~ll~~~~  150 (534)
                      +..|.||||.|+.+     ++.+++++|+++|++ ++..+. .|.||||.|+.++.   .++         ++.+++   
T Consensus        68 d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-iN~~d~-~G~TpLh~a~~~~~~~~~~i---------v~~Ll~---  133 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-INKKNS-DGETPLYCLLSNGYINNLEI---------LLFMIE---  133 (489)
T ss_pred             CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-CCCCCC-CcCcHHHHHHHcCCcChHHH---------HHHHHH---
Confidence            89999999999864     679999999999998 677777 89999999999864   444         555554   


Q ss_pred             CChhhhhcccCCCCcHHHHHHhCCC---HHHHHHHHhhchhhhcccCCCCCcHHHHHHHc----CcHHHHHHHHHhCCCc
Q 039300          151 TNKDLINRLDWHQRNPLHYAAASGN---VQMVQRLLEASKQLAYKRDCNGATPLHLAAEN----GELKVLKLLINKYPDA  223 (534)
Q Consensus       151 ~~~~~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~  223 (534)
                       .|.+++..|..|.||||+|+..++   .+++++|++.|+++....+..|.||||.++..    ++.++++.|+++|++ 
T Consensus       134 -~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-  211 (489)
T PHA02798        134 -NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-  211 (489)
T ss_pred             -cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-
Confidence             457899999999999999999987   99999999999987755566899999998764    489999999999998 


Q ss_pred             cccccCCCCcHHH-------HHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhh
Q 039300          224 IEIRDNSDRSILH-------VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA  296 (534)
Q Consensus       224 ~~~~d~~g~t~Lh-------~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  296 (534)
                      ++..+..|+++++       .+...++.+++++|+.. .+   +|.+|..|+||||+|+..++.+++++|++. |+|++.
T Consensus       212 i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~-~d---vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~-GAdin~  286 (489)
T PHA02798        212 INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY-ID---INQVDELGFNPLYYSVSHNNRKIFEYLLQL-GGDINI  286 (489)
T ss_pred             cccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc-CC---CCCcCcCCccHHHHHHHcCcHHHHHHHHHc-CCcccc
Confidence            7888889999877       24456778899988764 44   999999999999999999999999999998 899999


Q ss_pred             ccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhcc
Q 039300          297 KNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA  337 (534)
Q Consensus       297 ~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  337 (534)
                      +|.  .|.|||++|..       .....+++.|++.+++..
T Consensus       287 ~d~--~G~TpL~~A~~-------~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        287 ITE--LGNTCLFTAFE-------NESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cCC--CCCcHHHHHHH-------cCcHHHHHHHHccCCCHH
Confidence            999  99999999997       445678888887776654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-34  Score=235.36  Aligned_cols=183  Identities=28%  Similarity=0.416  Sum_probs=153.5

Q ss_pred             hhhcccCCCCCcHhHHHHHhCcHHHHHHHHHc-CCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 039300           39 TLFGMRDIEGNTPLHNVVTKKHKRVIRILVEK-DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE  117 (534)
Q Consensus        39 ~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g  117 (534)
                      .+....|.+|+||||+||..|+.++|++|+.. +..++ -.|..|+||||+|+..|+.++|+.|+.+..           
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~d-dkDdaGWtPlhia~s~g~~evVk~Ll~r~~-----------   96 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPD-DKDDAGWTPLHIAASNGNDEVVKELLNRSG-----------   96 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCC-CccccCCchhhhhhhcCcHHHHHHHhcCCC-----------
Confidence            33334445999999999999999999999964 54454 458899999999999999999999998732           


Q ss_pred             chHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCC
Q 039300          118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNG  197 (534)
Q Consensus       118 ~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  197 (534)
                                                          .++|..+..|.||||+|+..|+.+++++|++.|+.+. .+|..|
T Consensus        97 ------------------------------------advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~  139 (226)
T KOG4412|consen   97 ------------------------------------ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQG  139 (226)
T ss_pred             ------------------------------------CCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-cccccc
Confidence                                                2356666778899999999999999999999997654 788899


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHH
Q 039300          198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA  275 (534)
Q Consensus       198 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~  275 (534)
                      .||||.|+..|.++++++|+..++. ++..|+.|+||||.|...|+.++..+|++.|++   .+..|+.| ||+..|+
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd---~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD---TDREDKEG-TALRIAC  212 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhccc---eeeccccC-chHHHHH
Confidence            9999999999999999999988877 888999999999999888889999899998877   78888888 8877765

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=284.70  Aligned_cols=228  Identities=20%  Similarity=0.219  Sum_probs=205.6

Q ss_pred             CCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300           48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR  127 (534)
Q Consensus        48 g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~  127 (534)
                      .+++||.|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++.                   
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------------------   61 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-------------------   61 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-------------------
Confidence            4789999999999999999999999885 56778999999999999999999999988751                   


Q ss_pred             cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc
Q 039300          128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN  207 (534)
Q Consensus       128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  207 (534)
                                                   +..+..+.||||.|+..|+.++++.|++.|+......+..|.||||+|+..
T Consensus        62 -----------------------------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  112 (413)
T PHA02875         62 -----------------------------DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATIL  112 (413)
T ss_pred             -----------------------------cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHh
Confidence                                         122345779999999999999999999999877666777899999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      |+.++++.|+++|++ ++.++..|+||||+|+..|+.+++++|++++++   ++.+|..|+||||+|+..|+.+++++|+
T Consensus       113 ~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~TpL~~A~~~g~~eiv~~Ll  188 (413)
T PHA02875        113 KKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC---LDIEDCCGCTPLIIAMAKGDIAICKMLL  188 (413)
T ss_pred             CCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999 899999999999999999999999999999886   8999999999999999999999999999


Q ss_pred             hCcccchhhccccCCCC-ChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          288 RHKSVNIRAKNRSARNN-TTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       288 ~~~~~~~~~~n~~~~g~-t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      ++ |++++..+.  .|. ||+++|..       ....+++++|+++|++.+.
T Consensus       189 ~~-ga~~n~~~~--~~~~t~l~~A~~-------~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        189 DS-GANIDYFGK--NGCVAALCYAIE-------NNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             hC-CCCCCcCCC--CCCchHHHHHHH-------cCCHHHHHHHHHCCcCcch
Confidence            98 899999988  764 88998987       4567899999999998764

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-33  Score=287.17  Aligned_cols=260  Identities=22%  Similarity=0.226  Sum_probs=215.8

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH  122 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~  122 (534)
                      ..+..+.||||.|++.|+.++|++|+++|++++ ..|..|.||||+||..|+.++++.|++.+.....   . .+.++++
T Consensus        32 ~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~-~~~~~l~  106 (477)
T PHA02878         32 SASLIPFIPLHQAVEARNLDVVKSLLTRGHNVN-QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---F-YTLVAIK  106 (477)
T ss_pred             cccccCcchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---c-cchhhHH
Confidence            356678999999999999999999999999885 6799999999999999999999999998765221   2 6789999


Q ss_pred             HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhC--CCHHHHHHHHhhchhhhcccCCC-CCc
Q 039300          123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAAS--GNVQMVQRLLEASKQLAYKRDCN-GAT  199 (534)
Q Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~-g~t  199 (534)
                      .|+..++.++         ++.++..........+      ...+......  ...+++++|++.|+++. ..+.. |.|
T Consensus       107 ~a~~~~~~ei---------~~~Ll~~~~~~~~~~~------~~~~~~~~~~~~~~~~iv~~Ll~~gadin-~~~~~~g~t  170 (477)
T PHA02878        107 DAFNNRNVEI---------FKIILTNRYKNIQTID------LVYIDKKSKDDIIEAEITKLLLSYGADIN-MKDRHKGNT  170 (477)
T ss_pred             HHHHcCCHHH---------HHHHHhCcccCcccCc------HHHHhhccchhhHHHHHHHHHHHcCCCCC-ccCCCCCCC
Confidence            9999999998         7777764221111000      0111111111  23569999999999876 56666 999


Q ss_pred             HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhc-C
Q 039300          200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMG-L  278 (534)
Q Consensus       200 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~-~  278 (534)
                      |||+|+..|+.++++.|++.|++ ++.+|..|+||||+|+..++.+++++|++.|++   ++.+|..|+||||+|+.. +
T Consensus       171 pLh~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~---in~~d~~g~TpLh~A~~~~~  246 (477)
T PHA02878        171 ALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS---TDARDKCGNTPLHISVGYCK  246 (477)
T ss_pred             HHHHHHhCCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhcC
Confidence            99999999999999999999998 899999999999999999999999999999887   899999999999999976 6


Q ss_pred             ChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          279 HSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       279 ~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      +.+++++|+++ |++++.++. ..|.||||+|..         ...++++|++.|++.+.
T Consensus       247 ~~~iv~~Ll~~-gadvn~~~~-~~g~TpLh~A~~---------~~~~v~~Ll~~gadin~  295 (477)
T PHA02878        247 DYDILKLLLEH-GVDVNAKSY-ILGLTALHSSIK---------SERKLKLLLEYGADINS  295 (477)
T ss_pred             CHHHHHHHHHc-CCCCCccCC-CCCCCHHHHHcc---------CHHHHHHHHHCCCCCCC
Confidence            89999999998 899998874 169999999954         34678999999998764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.1e-34  Score=302.73  Aligned_cols=304  Identities=29%  Similarity=0.378  Sum_probs=238.5

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhh-----------h---------hhhcccCCCCCcHhHHHHHhCcH
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVL-----------E---------TLFGMRDIEGNTPLHNVVTKKHK   61 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~-----------~---------~~l~~~d~~g~TpLh~A~~~g~~   61 (534)
                      +.||+|+|.+.|..++++.+++.++.++........           .         ..-...++.|.||+|.|+..|..
T Consensus       308 ~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~  387 (1143)
T KOG4177|consen  308 DQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRV  387 (1143)
T ss_pred             ccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCch
Confidence            356666666666666666666665555431100000           0         00112456777888888888888


Q ss_pred             HHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc-CcchhhhhhhHH
Q 039300           62 RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ-NYDLSKSMQFLQ  140 (534)
Q Consensus        62 e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~~~~~~  140 (534)
                      +++++++.+|.++ +..+..|.||||.|+..++.++++.+++++++ .+..+. .|+|++|+|+..+ ..+.        
T Consensus       388 ~~v~Lll~~ga~~-~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~-~~~~~~-lG~T~lhvaa~~g~~~~~--------  456 (1143)
T KOG4177|consen  388 SVVELLLEAGADP-NSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS-PNAKAK-LGYTPLHVAAKKGRYLQI--------  456 (1143)
T ss_pred             hHHHhhhhccCCc-ccCCCCCcceeeehhhccCcceEEEEeccCCC-hhhHhh-cCCChhhhhhhcccHhhh--------
Confidence            8888888888775 46677788888888888888888888887776 566665 7788888888877 3332        


Q ss_pred             HHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhC
Q 039300          141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKY  220 (534)
Q Consensus       141 ~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  220 (534)
                       ...+.    ..+.++|..-..|.||||.|+..|+.+++..+++.++... .....+.+++|.|...+...+++.+++++
T Consensus       457 -~~~l~----~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~-~~~~~~l~~lhla~~~~~v~~~~~l~~~g  530 (1143)
T KOG4177|consen  457 -ARLLL----QYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDN-LDAKKGLTPLHLAADEDTVKVAKILLEHG  530 (1143)
T ss_pred             -hhhHh----hcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccC-ccchhccchhhhhhhhhhHHHHHHHhhcC
Confidence             22222    2236788888889999999999999999999998886544 45668889999999999999999999999


Q ss_pred             CCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcccc
Q 039300          221 PDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS  300 (534)
Q Consensus       221 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~  300 (534)
                      .. ++.++.+|.||||.|+.+|+.++|++|+++|++   ++.+|+.|+||||.|+..|+.+++.+|+++ |+++|..+. 
T Consensus       531 a~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~-GA~vna~d~-  604 (1143)
T KOG4177|consen  531 AN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGYTPLHQAAQQGHNDIAELLLKH-GASVNAADL-  604 (1143)
T ss_pred             Cc-eehhcccccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCCChhhHHHHcChHHHHHHHHHc-CCCCCcccc-
Confidence            88 889999999999999999999999999999988   999999999999999999999999999999 899999999 


Q ss_pred             CCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300          301 ARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       301 ~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                       +|.|||++|..       ..+..+.+.|+..++..
T Consensus       605 -~g~TpL~iA~~-------lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  605 -DGFTPLHIAVR-------LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             -cCcchhHHHHH-------hcccchhhHHHhccCcc
Confidence             99999999998       66788888999888884

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=267.67  Aligned_cols=208  Identities=28%  Similarity=0.344  Sum_probs=188.9

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHc-CCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300           49 NTPLHNVVTKKHKRVIRILVEK-DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR  127 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~  127 (534)
                      .+.++.|+++|..+.|+.|++. |.+++ ..|.+|.|+||+|+.+++.+++++|+++|++ +|..+.             
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~-~~D~~g~tlLHWAAiNNrl~v~r~li~~gad-vn~~gG-------------  109 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVN-NPDREGVTLLHWAAINNRLDVARYLISHGAD-VNAIGG-------------  109 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCC-CCCcCCccceeHHHHcCcHHHHHHHHHcCCC-ccccCC-------------
Confidence            4668899999999999999999 76664 6788999999999999999999999999998 232221             


Q ss_pred             cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc
Q 039300          128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN  207 (534)
Q Consensus       128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  207 (534)
                                                       .-+.||||+|+++|+..++++|+++|+++. .+|.+|.+|+|.|++.
T Consensus       110 ---------------------------------~l~stPLHWAar~G~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~~  155 (600)
T KOG0509|consen  110 ---------------------------------VLGSTPLHWAARNGHISVVDLLLQHGADPT-LKDKQGLTPLHLAAQF  155 (600)
T ss_pred             ---------------------------------CCCCCcchHHHHcCcHHHHHHHHHcCCCCc-eecCCCCcHHHHHHHh
Confidence                                             236799999999999999999999999976 7899999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccC-CCCCcHHHHHHhcCChhHHHHh
Q 039300          208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLID-RNGNTSLHLAAMGLHSDVVFTL  286 (534)
Q Consensus       208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~L  286 (534)
                      |+.-++-+|+.++.+ ++.+|.+|+||||+|+.+|....++.|++.++.   ++..| ++|+||||+|+..|+..++. |
T Consensus       156 ~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~---~~~~d~~~g~TpLHwa~~~gN~~~v~-L  230 (600)
T KOG0509|consen  156 GHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS---LLLTDDNHGNTPLHWAVVGGNLTAVK-L  230 (600)
T ss_pred             CchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc---ccccccccCCchHHHHHhcCCcceEe-h
Confidence            999999999999988 999999999999999999999989999999877   77777 99999999999999999999 6


Q ss_pred             hhCcccchhhccccCCCCChHHHhHh
Q 039300          287 SRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       287 l~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +..+|++.+..|.  +|+||+++|.+
T Consensus       231 l~~g~~~~d~~~~--~g~tp~~LA~~  254 (600)
T KOG0509|consen  231 LLEGGADLDKTNT--NGKTPFDLAQE  254 (600)
T ss_pred             hhhcCCccccccc--CCCCHHHHHHH
Confidence            6667899999999  99999999987

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.8e-33  Score=297.85  Aligned_cols=297  Identities=24%  Similarity=0.302  Sum_probs=187.4

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |-||||.|+..|+.+++++++.+|+.++.             .+.+|.||||.|++.+..|++++|+++|+++. ..+.+
T Consensus       242 gl~~lh~a~~~g~~~i~~~l~~~ga~~~~-------------~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~-~~~~~  307 (1143)
T KOG4177|consen  242 GLTPLHVAAFMGHLDIVKLLLQHGASVNV-------------STVRGETPLHMAARAGQVEVCKLLLQNGADVL-AKARD  307 (1143)
T ss_pred             CccHHHHHHhccchhHHHHHHhcccccCc-------------ccccccCcchhhhccchhhhHhhhhccCcccc-ccccc
Confidence            56888888888888888888888887773             66677777777777777777777777766553 22222


Q ss_pred             ---------------------------------CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc
Q 039300           82 ---------------------------------YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ  128 (534)
Q Consensus        82 ---------------------------------g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~  128 (534)
                                                       |.||||+++..++.++..+|...++.... ... .+.+|+|.|+..+
T Consensus       308 ~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~-a~~-k~~~pl~la~~~g  385 (1143)
T KOG4177|consen  308 DQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQ-AEE-KGFTPLHLAVKSG  385 (1143)
T ss_pred             ccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCc-ccc-cCCcchhhhcccC
Confidence                                             33333333333333322222222222111 111 4555555555555


Q ss_pred             CcchhhhhhhHHHHHHHHHH-----------------------------hCCChhhhhcccCCCCcHHHHHHhCC-CHHH
Q 039300          129 NYDLSKSMQFLQFIDIMVKI-----------------------------LGTNKDLINRLDWHQRNPLHYAAASG-NVQM  178 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~ll~~-----------------------------~~~~~~~~~~~d~~g~tpL~~A~~~g-~~~~  178 (534)
                      ..+.         ++.+++.                             +.+.+...+..+..|.||+|.|+..| ..++
T Consensus       386 ~~~~---------v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~  456 (1143)
T KOG4177|consen  386 RVSV---------VELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQI  456 (1143)
T ss_pred             chhH---------HHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhh
Confidence            5554         2222222                             11222344445555555555555555 4555


Q ss_pred             HHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccc
Q 039300          179 VQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN  258 (534)
Q Consensus       179 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~  258 (534)
                      ...+++.|.+++ .....|.||||+|+..|+.+++..+++.++. .+...+.|-+++|.|...+...+.+.++++|+.  
T Consensus       457 ~~~l~~~g~~~n-~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~--  532 (1143)
T KOG4177|consen  457 ARLLLQYGADPN-AVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN--  532 (1143)
T ss_pred             hhhHhhcCCCcc-hhccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhhhhhHHHHHHHhhcCCc--
Confidence            555555555433 3444555555555555555555555555533 444445555555555555555555555555554  


Q ss_pred             cccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          259 LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       259 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                       ++.++..|+||||.|+.+|+.++|++|+++ |+|++.+++  .|+||||.|+.       .....+..+|.++|+..+.
T Consensus       533 -v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~--~G~TPLH~Aa~-------~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  533 -VDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDK--LGYTPLHQAAQ-------QGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             -eehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCC--CCCChhhHHHH-------cChHHHHHHHHHcCCCCCc
Confidence             788999999999999999999999999999 899999999  99999999998       5578899999999998765

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.8e-32  Score=271.68  Aligned_cols=310  Identities=15%  Similarity=0.128  Sum_probs=231.4

Q ss_pred             CCCHHHH-HHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHH-hCcHHHHHHHHHcCCCCC----
Q 039300            2 DETPLHI-AARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVT-KKHKRVIRILVEKDSAPS----   75 (534)
Q Consensus         2 G~T~Lh~-Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~-~g~~e~v~~Ll~~g~~~~----   75 (534)
                      |.+|+|. |...|++|+|++|+++|+++|.             +++.|.||||+|+. +++.|++++|+++|++..    
T Consensus        71 ~~~~~~~~~s~n~~lElvk~LI~~GAdvN~-------------~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~  137 (631)
T PHA02792         71 DFDIFEYLCSDNIDIELLKLLISKGLEINS-------------IKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQ  137 (631)
T ss_pred             CccHHHHHHHhcccHHHHHHHHHcCCCccc-------------ccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccc
Confidence            6678875 5558999999999999999984             67789999999976 699999999999998631    


Q ss_pred             -------------------------------cCCccCCCcHHHHHHHcC-------cHHHHHHHHhcCCCCcccCCCCCC
Q 039300           76 -------------------------------SYINKAYQTPLSIAIDVR-------LNDIACFIIDKSSESLNATRLPDE  117 (534)
Q Consensus        76 -------------------------------~~~~~~g~tpL~~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~~g  117 (534)
                                                     +..+..|.||||+|+.++       +.|+++.|+++|++ ++..+. .|
T Consensus       138 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~-~g  215 (631)
T PHA02792        138 YGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE-MRYYTY-RE  215 (631)
T ss_pred             cCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC-cCccCC-CC
Confidence                                           123556999999999999       89999999999998 566666 89


Q ss_pred             chHHHHHHHhc--Ccchhhhhhh-----HHHHH-------------------HHHHHhCCChh------hhhcccCC---
Q 039300          118 LTLLHFFVMRQ--NYDLSKSMQF-----LQFID-------------------IMVKILGTNKD------LINRLDWH---  162 (534)
Q Consensus       118 ~t~L~~A~~~~--~~~~~~~~~~-----~~~~~-------------------~ll~~~~~~~~------~~~~~d~~---  162 (534)
                      .||||+|+.+.  +.|+.+.+..     .....                   .++..+.+.+.      .++..+..   
T Consensus       216 ~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~  295 (631)
T PHA02792        216 HTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIII  295 (631)
T ss_pred             ChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHH
Confidence            99999999999  4555222100     00000                   01111111110      00000000   


Q ss_pred             ----------CCcHHHHHHhCC--CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC
Q 039300          163 ----------QRNPLHYAAASG--NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS  230 (534)
Q Consensus       163 ----------g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  230 (534)
                                -+-.||.-...+  +.+++++|++.|++..   ......+++.|+..|+.++++.|+++|++ ++.+|..
T Consensus       296 ~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~  371 (631)
T PHA02792        296 SSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDN  371 (631)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCC
Confidence                      011244444444  6899999999999753   22366779999999999999999999999 8888877


Q ss_pred             C--CcHHHHHHhcCCHH---HHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCC
Q 039300          231 D--RSILHVAAKHGNWN---IVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNT  305 (534)
Q Consensus       231 g--~t~Lh~A~~~~~~~---~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t  305 (534)
                      |  .||||+|+.....+   ++++|+++|++   +|.+|..|.||||+|+..++.+++++|+++ |++++.+|.  .|.|
T Consensus       372 g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~--~G~T  445 (631)
T PHA02792        372 IINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTK--YGST  445 (631)
T ss_pred             CCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCC--CCCC
Confidence            5  69999988776654   57888999987   999999999999999999999999999998 899999999  9999


Q ss_pred             hHHHhHhhhh---chHHHHHHhHHHHHHHHhhhc
Q 039300          306 TLEIDEMTRA---DVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       306 ~l~~a~~~~~---~~~~~~~~~~~~~L~~~ga~~  336 (534)
                      |+++|.....   .........+++.|++.|...
T Consensus       446 pL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        446 CIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            9999975211   111122345778888777543

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-31  Score=278.54  Aligned_cols=253  Identities=15%  Similarity=0.137  Sum_probs=182.8

Q ss_pred             cccCCCCCcHhHHHH--HhCcHHHHHHHHHcCCCCCcC--CccCC-----------CcHHHHHHH-----------cCcH
Q 039300           42 GMRDIEGNTPLHNVV--TKKHKRVIRILVEKDSAPSSY--INKAY-----------QTPLSIAID-----------VRLN   95 (534)
Q Consensus        42 ~~~d~~g~TpLh~A~--~~g~~e~v~~Ll~~g~~~~~~--~~~~g-----------~tpL~~A~~-----------~g~~   95 (534)
                      +.+|..|.||||.|+  .+|+.|+|++|+++|++++..  .+..|           .||||+|+.           .++.
T Consensus       130 n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~  209 (661)
T PHA02917        130 SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP  209 (661)
T ss_pred             CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcH
Confidence            458999999999654  578999999999999988522  12233           599999986           4689


Q ss_pred             HHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCc--chhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhC
Q 039300           96 DIACFIIDKSSESLNATRLPDELTLLHFFVMRQNY--DLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAAS  173 (534)
Q Consensus        96 ~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~  173 (534)
                      +++++|+++|++ ++..+. +|.||||+|+.+++.  ++         ++.|++ ..+.....+..|..|.+|+|+|+..
T Consensus       210 eiv~~Li~~Gad-vn~~d~-~G~TpLh~A~~~g~~~~ei---------vk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl  277 (661)
T PHA02917        210 EVVKCLINHGIK-PSSIDK-NYCTALQYYIKSSHIDIDI---------VKLLMK-GIDNTAYSYIDDLTCCTRGIMADYL  277 (661)
T ss_pred             HHHHHHHHCCCC-cccCCC-CCCcHHHHHHHcCCCcHHH---------HHHHHh-CCcccccccccCcccccchHHHHHH
Confidence            999999999998 677776 999999999999986  45         555543 1111111123455566666666631


Q ss_pred             ---------CCHHHHHHHHhhchhhhcc------------------cCCCCCcHHHHHH---HcCc--HHHHHHHHHhCC
Q 039300          174 ---------GNVQMVQRLLEASKQLAYK------------------RDCNGATPLHLAA---ENGE--LKVLKLLINKYP  221 (534)
Q Consensus       174 ---------g~~~~v~~Ll~~~~~~~~~------------------~~~~g~tpL~~A~---~~g~--~~~v~~Ll~~~~  221 (534)
                               .+.++++.|++.|++....                  .+..+.+++|.+.   ..|.  .++++.|++.|+
T Consensus       278 ~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GA  357 (661)
T PHA02917        278 NSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGA  357 (661)
T ss_pred             HhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCC
Confidence                     1556777777777542100                  0112233333322   2443  346666666555


Q ss_pred             Cc-----------------------------cccccCCCCcHHHHHHhcC-----------------------CHHHHHH
Q 039300          222 DA-----------------------------IEIRDNSDRSILHVAAKHG-----------------------NWNIVSF  249 (534)
Q Consensus       222 ~~-----------------------------~~~~d~~g~t~Lh~A~~~~-----------------------~~~~~~~  249 (534)
                      +.                             ++..+.+|+||||.|++.+                       ..+++++
T Consensus       358 dvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  437 (661)
T PHA02917        358 VVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINI  437 (661)
T ss_pred             CCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHH
Confidence            31                             2334557999999998543                       2567899


Q ss_pred             HHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          250 ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       250 Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      |+++|++   +|.+|..|+||||+|+..++.+++++|+++ |+|++.+|.  .|.|||++|..
T Consensus       438 Ll~~GAd---IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~-GAdin~~d~--~G~T~L~~A~~  494 (661)
T PHA02917        438 CLPYLKD---INMIDKRGETLLHKAVRYNKQSLVSLLLES-GSDVNIRSN--NGYTCIAIAIN  494 (661)
T ss_pred             HHHCCCC---CCCCCCCCcCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCC--CCCCHHHHHHH
Confidence            9999988   999999999999999999999999999998 899999999  99999999984

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=243.94  Aligned_cols=219  Identities=23%  Similarity=0.303  Sum_probs=184.4

Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHc-CCCCC-------cCCc
Q 039300            8 IAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEK-DSAPS-------SYIN   79 (534)
Q Consensus         8 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~-g~~~~-------~~~~   79 (534)
                      -|++.|.+..+..|+....+..       ...+++ .+.+|.|||-+|+++||.++|++|+++ ++++.       +-..
T Consensus        10 naa~~g~l~~l~~ll~~~s~~e-------i~~l~~-~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~   81 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEE-------IISLIG-EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGET   81 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHH-------HHHHhc-cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcc
Confidence            6888899888888876533211       112222 455678999999999999999999996 44432       1235


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc
Q 039300           80 KAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL  159 (534)
Q Consensus        80 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~  159 (534)
                      .+|-+||..|+..||.++|+.|++++++ .|.... ...|||-.||..|+.++         ++++++.    +.+++..
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~-VN~tT~-TNStPLraACfDG~lei---------vKyLvE~----gad~~Ia  146 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGAS-VNDTTR-TNSTPLRAACFDGHLEI---------VKYLVEH----GADPEIA  146 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCc-cccccc-cCCccHHHHHhcchhHH---------HHHHHHc----CCCCccc
Confidence            5788999999999999999999999987 444443 66799999999999999         8888754    4789999


Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300          160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA  239 (534)
Q Consensus       160 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  239 (534)
                      |..|.|.||.||..|+.+++++|++.|++++ .++..|.|+||.|++.|++|++++|+++++. + .+|..|.|||..|+
T Consensus       147 nrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks~kGNTALH~caEsG~vdivq~Ll~~ga~-i-~~d~~GmtPL~~Aa  223 (615)
T KOG0508|consen  147 NRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKSYKGNTALHDCAESGSVDIVQLLLKHGAK-I-DVDGHGMTPLLLAA  223 (615)
T ss_pred             ccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhcccCchHHHhhhhcccHHHHHHHHhCCce-e-eecCCCCchHHHHh
Confidence            9999999999999999999999999999976 7899999999999999999999999999987 3 47888999999999


Q ss_pred             hcCCHHHHHHHHh
Q 039300          240 KHGNWNIVSFILK  252 (534)
Q Consensus       240 ~~~~~~~~~~Ll~  252 (534)
                      ..|+.+++++|+.
T Consensus       224 ~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  224 VTGHTDIVERLLQ  236 (615)
T ss_pred             hhcchHHHHHHhc
Confidence            9999999999983

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=3.2e-30  Score=252.76  Aligned_cols=208  Identities=24%  Similarity=0.286  Sum_probs=172.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhc-CccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            5 PLHIAARIGDHAIVSEIMKY-VPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         5 ~Lh~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      -++.|++.|.++.|+.|++. |.++++             .|.+|.|+||+|+.+++.+++++|+++|++++.....-+.
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~-------------~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~s  113 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNN-------------PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGS  113 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCC-------------CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCC
Confidence            46789999999999999999 877774             8899999999999999999999999999999866667789


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCC
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ  163 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g  163 (534)
                      ||||+|+.+|+..+|++|+++|++ ++..|. +|.+|+|.|+..++.-.         +-.++...    .++|.+|.+|
T Consensus       114 tPLHWAar~G~~~vv~lLlqhGAd-pt~~D~-~G~~~lHla~~~~~~~~---------vayll~~~----~d~d~~D~~g  178 (600)
T KOG0509|consen  114 TPLHWAARNGHISVVDLLLQHGAD-PTLKDK-QGLTPLHLAAQFGHTAL---------VAYLLSKG----ADIDLRDNNG  178 (600)
T ss_pred             CcchHHHHcCcHHHHHHHHHcCCC-CceecC-CCCcHHHHHHHhCchHH---------HHHHHHhc----ccCCCcCCCC
Confidence            999999999999999999999998 566676 88888888888888776         55555543    6778888888


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300          164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  241 (534)
Q Consensus       164 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  241 (534)
                      +||||+|+..|....++.|++.|+.+....|.+|.||||+|+..|+..+++ |+..+....+..|.+|.||+.+|.+.
T Consensus       179 rTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  179 RTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            888888888887777888888888777555578888888888888888888 44444433777788888888888666

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.2e-28  Score=244.20  Aligned_cols=294  Identities=13%  Similarity=0.074  Sum_probs=205.3

Q ss_pred             CCCHHHHHHhcCCH-HHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHH-HHHhCcHHHHHHHHHcCCCCCcCCc
Q 039300            2 DETPLHIAARIGDH-AIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHN-VVTKKHKRVIRILVEKDSAPSSYIN   79 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~-~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~-A~~~g~~e~v~~Ll~~g~~~~~~~~   79 (534)
                      |.||||+-..+.+. .-++.++..|.+++             ..|.+|.+|+|+ |..+|+.|+|++|+++|++++ ..+
T Consensus        37 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN-~~~  102 (631)
T PHA02792         37 GETPLKAYVTKKNNNIKNDVVILLLSSVD-------------YKNINDFDIFEYLCSDNIDIELLKLLISKGLEIN-SIK  102 (631)
T ss_pred             CCccHHHHHhhhhhhHHHHHHHHHHhCCC-------------cCccCCccHHHHHHHhcccHHHHHHHHHcCCCcc-ccc
Confidence            56777776554442 22344444444444             378889999986 567899999999999999997 456


Q ss_pred             cCCCcHHHHHHH-cCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc
Q 039300           80 KAYQTPLSIAID-VRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR  158 (534)
Q Consensus        80 ~~g~tpL~~A~~-~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~  158 (534)
                      ..+.+|+++|+. .++.|++++|+++|++ ...... .|.||++.-+.+...--         .+.-.+- .+.+-.+|.
T Consensus       103 n~~~~~l~ya~~~~~~~eivk~Ll~~Gad-~~~~~~-~g~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~i~~  170 (631)
T PHA02792        103 NGINIVEKYATTSNPNVDVFKLLLDKGIP-TCSNIQ-YGYKIIIEQITRAEYYN---------WDDELDD-YDYDYTTDY  170 (631)
T ss_pred             CCCCcceeEeecCCCChHHHHHHHHCCCC-cccccc-cCcchhhhhcccccccc---------hhhhccc-ccccccccc
Confidence            679999999976 6999999999999987 222233 66666665554322110         0000000 011123455


Q ss_pred             ccCCCCcHHHHHHhCC-------CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcC--cHHHHHHHHH-----------
Q 039300          159 LDWHQRNPLHYAAASG-------NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVLKLLIN-----------  218 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~-----------  218 (534)
                      .|..|.||||+|+..+       +.++++.|+++|+++. ..|..|.||||.|+.+.  ..|+++.|++           
T Consensus       171 ~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~  249 (631)
T PHA02792        171 DDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNI  249 (631)
T ss_pred             CCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhH
Confidence            6666777777777766       6677777777776654 45666777777776666  5556665554           


Q ss_pred             --------------------------------------------------------------------------------
Q 039300          219 --------------------------------------------------------------------------------  218 (534)
Q Consensus       219 --------------------------------------------------------------------------------  218 (534)
                                                                                                      
T Consensus       250 l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId  329 (631)
T PHA02792        250 LSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMID  329 (631)
T ss_pred             HHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCC--CcHHHHHHhcCChh---HHHHhhhCcccc
Q 039300          219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNG--NTSLHLAAMGLHSD---VVFTLSRHKSVN  293 (534)
Q Consensus       219 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g--~t~Lh~A~~~~~~~---~v~~Ll~~~~~~  293 (534)
                      +|.+ .  ....+.++++.|+..|+.+++++|+++|++   +|.+|.+|  .||||+|+.....+   ++++|+++ |+|
T Consensus       330 ~Ga~-~--~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD---IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~-GAD  402 (631)
T PHA02792        330 EGAT-L--YRFKHINKYFQKFDNRDPKVVEYILKNGNV---VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY-IDD  402 (631)
T ss_pred             CCCc-c--ccCCcchHHHHHHHcCCHHHHHHHHHcCCc---hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc-CCc
Confidence            2222 1  012355678899999999999999999987   88888775  69999988776654   57888888 799


Q ss_pred             hhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          294 IRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       294 ~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      +|.+|.  .|.|||++|..       ....++.++|+++|++.+.
T Consensus       403 IN~kD~--~G~TPLh~Aa~-------~~n~eivelLLs~GADIN~  438 (631)
T PHA02792        403 INKIDK--HGRSILYYCIE-------SHSVSLVEWLIDNGADINI  438 (631)
T ss_pred             cccccc--cCcchHHHHHH-------cCCHHHHHHHHHCCCCCCC
Confidence            999999  99999999997       4567889999999998654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=7.1e-27  Score=213.00  Aligned_cols=178  Identities=20%  Similarity=0.241  Sum_probs=131.9

Q ss_pred             CCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcC--cHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300           45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVR--LNDIACFIIDKSSESLNATRLPDELTLLH  122 (534)
Q Consensus        45 d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~  122 (534)
                      ...+.||||.|+..|+.++|+.|++.+    +..|..|.||||+|+..+  +.+++++|+++|++ ++..+.        
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-vn~~~~--------   84 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-VNFKTR--------   84 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-CCccCC--------
Confidence            456789999999999999999988763    245778889999988754  78999999998876 222211        


Q ss_pred             HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhC---CCHHHHHHHHhhchhhhcccCCCCCc
Q 039300          123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAAS---GNVQMVQRLLEASKQLAYKRDCNGAT  199 (534)
Q Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t  199 (534)
                                                            ..|.||||+|+..   ++.+++++|+++|++++ .+|..|.|
T Consensus        85 --------------------------------------~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~T  125 (209)
T PHA02859         85 --------------------------------------DNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKN  125 (209)
T ss_pred             --------------------------------------CCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCC
Confidence                                                  2355666655432   35777888888887765 56778888


Q ss_pred             HHHHHHH--cCcHHHHHHHHHhCCCccccccCCCCcHHHH-HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300          200 PLHLAAE--NGELKVLKLLINKYPDAIEIRDNSDRSILHV-AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM  276 (534)
Q Consensus       200 pL~~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~  276 (534)
                      |||.|+.  .++.+++++|++.+.+ ++.+|..|.||||. |+..++.+++++|+++|++   ++.+|..|.||||+|..
T Consensus       126 pLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad---i~~~d~~g~tpl~la~~  201 (209)
T PHA02859        126 LLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID---INETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhh
Confidence            8887765  3578888888888877 77788888888885 4566778888888888776   77888888888888876


Q ss_pred             cC
Q 039300          277 GL  278 (534)
Q Consensus       277 ~~  278 (534)
                      ++
T Consensus       202 ~~  203 (209)
T PHA02859        202 RN  203 (209)
T ss_pred             hh
Confidence            54

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.95  E-value=8.4e-26  Score=245.72  Aligned_cols=276  Identities=19%  Similarity=0.139  Sum_probs=181.3

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhc--CccccccCchhhhhhhhcccCCCCCcHhH-HHHHhCcHHHHHHHHHcCCCCCcCC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKY--VPAVNQAGSASVLETLFGMRDIEGNTPLH-NVVTKKHKRVIRILVEKDSAPSSYI   78 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~--g~~~~~~~~~~~~~~~l~~~d~~g~TpLh-~A~~~g~~e~v~~Ll~~g~~~~~~~   78 (534)
                      ++++++.||+.|+.+.|+.+++.  +.++|             ..|..|.|||| .|+.+++.+++++|++.|+     .
T Consensus        17 ~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-------------~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~   78 (743)
T TIGR00870        17 EEKAFLPAAERGDLASVYRDLEEPKKLNIN-------------CPDRLGRSALFVAAIENENLELTELLLNLSC-----R   78 (743)
T ss_pred             HHHHHHHHHHcCCHHHHHHHhccccccCCC-------------CcCccchhHHHHHHHhcChHHHHHHHHhCCC-----C
Confidence            35567777777777777777776  44444             36677777777 6777777777777777764     3


Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc
Q 039300           79 NKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR  158 (534)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~  158 (534)
                      +..|.||||.|+.+ ..+.++.++........     .+..+          ..             .   .   .....
T Consensus        79 ~~~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~-----~~~~~----------~~-------------~---~---~~~~~  123 (743)
T TIGR00870        79 GAVGDTLLHAISLE-YVDAVEAILLHLLAAFR-----KSGPL----------EL-------------A---N---DQYTS  123 (743)
T ss_pred             CCcChHHHHHHHhc-cHHHHHHHHHHHhhccc-----ccCch----------hh-------------h---c---ccccc
Confidence            55677777777652 22333333322211000     00000          00             0   0   11122


Q ss_pred             ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhccc-------------CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccc
Q 039300          159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR-------------DCNGATPLHLAAENGELKVLKLLINKYPDAIE  225 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  225 (534)
                      .+..|.||||+|+..|+.++++.|+++|++++...             ...|.||||.|+..|+.+++++|++++++ ++
T Consensus       124 ~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in  202 (743)
T TIGR00870       124 EFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-IL  202 (743)
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hh
Confidence            34579999999999999999999999999876321             13589999999999999999999999987 89


Q ss_pred             cccCCCCcHHHHHHhcC---------CHHHHHHHHhCCcccccc----cccCCCCCcHHHHHHhcCChhHHHHhhhCccc
Q 039300          226 IRDNSDRSILHVAAKHG---------NWNIVSFILKSPEMENLI----NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSV  292 (534)
Q Consensus       226 ~~d~~g~t~Lh~A~~~~---------~~~~~~~Ll~~~~~~~~~----~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  292 (534)
                      ..|..|+||||+|+..+         ..++.+++++.++.....    +..|.+|.||||+|+..|+.+++++|++. +.
T Consensus       203 ~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~  281 (743)
T TIGR00870       203 TADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KY  281 (743)
T ss_pred             hHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HH
Confidence            99999999999999986         234556666654432222    67899999999999999999999999985 23


Q ss_pred             chhhccccCCCCChHHHhHhhhhchHHHH-HHhHHHHHHHHhh
Q 039300          293 NIRAKNRSARNNTTLEIDEMTRADVTEVQ-KHLTLKALKTAYA  334 (534)
Q Consensus       293 ~~~~~n~~~~g~t~l~~a~~~~~~~~~~~-~~~~~~~L~~~ga  334 (534)
                      +......  ....|.+++..........+ +....+.+...+.
T Consensus       282 ~~kk~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  322 (743)
T TIGR00870       282 KQKKFVA--WPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVI  322 (743)
T ss_pred             hcceeec--cCcchHhHhhhccccCCcccccccHHHHHHHHHH
Confidence            3333333  55556655544211111111 2245555555554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=9.4e-27  Score=227.55  Aligned_cols=216  Identities=20%  Similarity=0.176  Sum_probs=158.1

Q ss_pred             HHHHhCcHHHHHHHHHcCCCCC-----cCCccCCCcHHHHHHH--cCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300           54 NVVTKKHKRVIRILVEKDSAPS-----SYINKAYQTPLSIAID--VRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM  126 (534)
Q Consensus        54 ~A~~~g~~e~v~~Ll~~g~~~~-----~~~~~~g~tpL~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~  126 (534)
                      +|+..+..|++++|+.+|++++     -..+..++|+||.++.  .|+.+++++|+++|++                   
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD-------------------  143 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV-------------------  143 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC-------------------
Confidence            5666666666666666665543     0234445666666665  5566666666666655                   


Q ss_pred             hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhccc-----CCCCCcHH
Q 039300          127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR-----DCNGATPL  201 (534)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~g~tpL  201 (534)
                                                   ++..  ++.||+|.|+..++.+++++|+++|++..+..     +..+.+|+
T Consensus       144 -----------------------------In~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l  192 (437)
T PHA02795        144 -----------------------------IYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRG  192 (437)
T ss_pred             -----------------------------CCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchh
Confidence                                         2321  23678888888888888888888887443222     13477899


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCC--
Q 039300          202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLH--  279 (534)
Q Consensus       202 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~--  279 (534)
                      |.|+..++.++++.|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++   +|.+|..|.||||+|+..|+  
T Consensus       193 ~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd---IN~~d~~G~TpLh~Aa~~g~~~  268 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN---VNAVMSNGYTCLDVAVDRGSVI  268 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCcc
Confidence            999999999999999999998 899999999999999999999999999999987   99999999999999999984  


Q ss_pred             ------hhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          280 ------SDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       280 ------~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                            .+++++|+++ |++++....     |.+...         ..+.++++.+++++.....
T Consensus       269 ~~~~~~~eIvelLL~~-gadI~~~~~-----~~~~~~---------~~n~~~ik~lI~y~~~ldy  318 (437)
T PHA02795        269 ARRETHLKILEILLRE-PLSIDCIKL-----AILNNT---------IENHDVIKLCIKYFMMVDY  318 (437)
T ss_pred             cccccHHHHHHHHHhC-CCCCCchhH-----Hhhhcc---------cchHHHHHHHHHHHHhccc
Confidence                  5899999987 677665433     111110         1245677777777765443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2e-26  Score=209.99  Aligned_cols=174  Identities=17%  Similarity=0.252  Sum_probs=154.2

Q ss_pred             CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCC--CHHHHHHHHhhchhhhccc
Q 039300          116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASG--NVQMVQRLLEASKQLAYKR  193 (534)
Q Consensus       116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~  193 (534)
                      .+.+|||.|+..++.+.         ++.+++.       ++..|..|.||||+|+..+  +.+++++|+++|++++...
T Consensus        20 ~~~~pL~~A~~~~~~~~---------vk~Li~~-------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~   83 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEG---------VKKWIKF-------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKT   83 (209)
T ss_pred             ccCcHHHHHHHhCcHHH---------HHHHHHh-------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC
Confidence            56799999999999998         7777653       5667889999999999854  8999999999999987443


Q ss_pred             CCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCcHHHHHHh--cCCHHHHHHHHhCCcccccccccCCCCC
Q 039300          194 DCNGATPLHLAAEN---GELKVLKLLINKYPDAIEIRDNSDRSILHVAAK--HGNWNIVSFILKSPEMENLINLIDRNGN  268 (534)
Q Consensus       194 ~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~~~~~Ll~~~~~~~~~~~~d~~g~  268 (534)
                      +..|.||||+|+..   ++.+++++|+++|++ ++.+|..|+||||+|+.  .++.+++++|++.|++   ++.+|.+|+
T Consensus        84 ~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad---in~~d~~g~  159 (209)
T PHA02859         84 RDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS---FLNKDFDNN  159 (209)
T ss_pred             CCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cccccCCCC
Confidence            45899999998764   579999999999999 89999999999999986  4689999999999987   899999999


Q ss_pred             cHHHH-HHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          269 TSLHL-AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       269 t~Lh~-A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      ||||. |+..++.+++++|+++ |++++.+|.  .|+||+++|..
T Consensus       160 t~Lh~~a~~~~~~~iv~~Ll~~-Gadi~~~d~--~g~tpl~la~~  201 (209)
T PHA02859        160 NILYSYILFHSDKKIFDFLTSL-GIDINETNK--SGYNCYDLIKF  201 (209)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHhh
Confidence            99995 5678899999999998 899999999  99999999987

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.8e-26  Score=222.61  Aligned_cols=220  Identities=15%  Similarity=0.115  Sum_probs=177.2

Q ss_pred             HHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHH--hCcHHHHHHHHHcCCCCCcCCccCCCcH
Q 039300            8 IAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVT--KKHKRVIRILVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         8 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~--~g~~e~v~~Ll~~g~~~~~~~~~~g~tp   85 (534)
                      +|+..+.-|+++.|+.+|++++.-+      ..+ .++..++|+||+|+.  +|+.++|++|+++|+++..   .++.||
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~------~~~-~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~  152 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFS------III-KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNA  152 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhh------hhh-hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCH
Confidence            7899999999999999999987311      112 378889999999999  8999999999999999863   355899


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCc
Q 039300           86 LSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN  165 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~t  165 (534)
                      ||.|+..++.+++++|+++|++..+     .+.+++                                     .+..+.+
T Consensus       153 lh~A~~~~~~eIVk~Lls~Ga~~~n-----~~~~~l-------------------------------------~~~~~~t  190 (437)
T PHA02795        153 YFRGICKKESSVVEFILNCGIPDEN-----DVKLDL-------------------------------------YKIIQYT  190 (437)
T ss_pred             HHHHHHcCcHHHHHHHHhcCCcccc-----cccchh-------------------------------------hhhhccc
Confidence            9999999999999999999985211     111111                                     1123668


Q ss_pred             HHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC--
Q 039300          166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN--  243 (534)
Q Consensus       166 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~--  243 (534)
                      ++|.|+..++.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+  
T Consensus       191 ~l~~a~~~~~~eIve~LIs~GADIN-~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~  268 (437)
T PHA02795        191 RGFLVDEPTVLEIYKLCIPYIEDIN-QLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVI  268 (437)
T ss_pred             hhHHHHhcCHHHHHHHHHhCcCCcC-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcc
Confidence            9999999999999999999999875 7889999999999999999999999999998 89999999999999999884  


Q ss_pred             ------HHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          244 ------WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       244 ------~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                            .+++++|++++++   ++..+.   |++..  ...+.++++.++.+
T Consensus       269 ~~~~~~~eIvelLL~~gad---I~~~~~---~~~~~--~~~n~~~ik~lI~y  312 (437)
T PHA02795        269 ARRETHLKILEILLREPLS---IDCIKL---AILNN--TIENHDVIKLCIKY  312 (437)
T ss_pred             cccccHHHHHHHHHhCCCC---CCchhH---Hhhhc--ccchHHHHHHHHHH
Confidence                  6899999998775   544332   22211  11256788888776

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=6.7e-27  Score=198.67  Aligned_cols=241  Identities=20%  Similarity=0.207  Sum_probs=212.7

Q ss_pred             cccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHH
Q 039300           42 GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL  121 (534)
Q Consensus        42 ~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  121 (534)
                      ..++..|+.-+-.|.+.|+.+++..++...++-+...+.+|.+.++.++-.++.+.+..++.+++. .+..+. -+.+|+
T Consensus        56 ~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r-gnevs~-~p~s~~  133 (296)
T KOG0502|consen   56 ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR-GNEVSL-MPWSPL  133 (296)
T ss_pred             HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc-CCcccc-ccCChh
Confidence            347788999999999999999999999888877767788899999999999999999999999987 454554 788999


Q ss_pred             HHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHH
Q 039300          122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL  201 (534)
Q Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  201 (534)
                      ..++...+.+.         ...+.+      ..+|..|+.|.|||.+|+..|+.++|++|++.|+++. ...+...++|
T Consensus       134 slsVhql~L~~---------~~~~~~------n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-~lgk~resAL  197 (296)
T KOG0502|consen  134 SLSVHQLHLDV---------VDLLVN------NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-ALGKYRESAL  197 (296)
T ss_pred             hHHHHHHHHHH---------HHHHhh------ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-hhhhhhhhhH
Confidence            99998877665         333333      5689999999999999999999999999999999876 5677889999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChh
Q 039300          202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSD  281 (534)
Q Consensus       202 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  281 (534)
                      .+|++.|..++|++|+.++++ +|..|-+|-|||-+|++.++.++++.|++.|++   ++..|..|++++.+|+..|+. 
T Consensus       198 sLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd---~t~e~dsGy~~mdlAValGyr-  272 (296)
T KOG0502|consen  198 SLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD---VTQEDDSGYWIMDLAVALGYR-  272 (296)
T ss_pred             hHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCCC---cccccccCCcHHHHHHHhhhH-
Confidence            999999999999999999999 999999999999999999999999999999998   999999999999999999998 


Q ss_pred             HHHHhhhCcccchhhccccCCCCChHH
Q 039300          282 VVFTLSRHKSVNIRAKNRSARNNTTLE  308 (534)
Q Consensus       282 ~v~~Ll~~~~~~~~~~n~~~~g~t~l~  308 (534)
                      +++..+++ .++.+..|+  .-+||+|
T Consensus       273 ~Vqqvie~-h~lkl~Q~~--~~~~~~~  296 (296)
T KOG0502|consen  273 IVQQVIEK-HALKLCQDS--EKRTPLH  296 (296)
T ss_pred             HHHHHHHH-HHHHHhhcc--cCCCCCC
Confidence            77777776 578888887  7788764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=3.7e-25  Score=219.71  Aligned_cols=252  Identities=25%  Similarity=0.269  Sum_probs=162.8

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      +=|--|++.|+.+.+..||+....-.........+.-.+.+|.+|.|+||.|+.+|+.+++++|++..+-. ...+..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCc
Confidence            45778999999999999998733211111111123445678999999999999999999999999998655 36679999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCC
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ  163 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g  163 (534)
                      +|||+|++.|+.+++++++.++.. .+.... +                                              |
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~-~na~~~-e----------------------------------------------~  115 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDI-LNAVNI-E----------------------------------------------N  115 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccC-CCcccc-c----------------------------------------------C
Confidence            999999999999999999988733 333333 4                                              4


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc-------cccccCCCCcHHH
Q 039300          164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA-------IEIRDNSDRSILH  236 (534)
Q Consensus       164 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~t~Lh  236 (534)
                      .||||.|++.|+.+++.+|+.+|++.. .+|..+.|+|-+|++.|..++++.|++..-..       -..++..+.+|||
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH  194 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH  194 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc
Confidence            555555555555555555555555433 44555555555555555555555555441110       1223344556666


Q ss_pred             HHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          237 VAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       237 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      .|+++|+.++++.|++.|-+   +|...++| |+||-|+..|..+++++|++. |++..++|.  .|+|+|++-..
T Consensus       195 laakngh~~~~~~ll~ag~d---in~~t~~g-talheaalcgk~evvr~ll~~-gin~h~~n~--~~qtaldil~d  263 (854)
T KOG0507|consen  195 LAAKNGHVECMQALLEAGFD---INYTTEDG-TALHEAALCGKAEVVRFLLEI-GINTHIKNQ--HGQTALDIIID  263 (854)
T ss_pred             hhhhcchHHHHHHHHhcCCC---cccccccc-hhhhhHhhcCcchhhhHHHhh-ccccccccc--cchHHHHHHHh
Confidence            66666666666666666554   55555555 666666666666666666665 556666666  66666666544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=3.1e-25  Score=226.37  Aligned_cols=275  Identities=20%  Similarity=0.222  Sum_probs=200.7

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCC
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY   82 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g   82 (534)
                      +|+|-.||+.||.|.|+.|+.+|+++.             .+|..|.+||.+|+..||..+|+.|+.+.+++....|+.+
T Consensus       758 ~t~LT~acaggh~e~vellv~rganie-------------hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtk  824 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIE-------------HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTK  824 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhccccc-------------ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccccc
Confidence            689999999999999999999999866             4788888888888888888888888888888777777888


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc--c
Q 039300           83 QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL--D  160 (534)
Q Consensus        83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--d  160 (534)
                      .|+|-+||..|+.++|++||..+++. ..++. ...|||..|...|..++         +..++..    |..+|.+  .
T Consensus       825 dt~lSlacsggr~~vvelLl~~gank-ehrnv-sDytPlsla~Sggy~~i---------I~~llS~----GseInSrtgS  889 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANK-EHRNV-SDYTPLSLARSGGYTKI---------IHALLSS----GSEINSRTGS  889 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccc-cccch-hhcCchhhhcCcchHHH---------HHHHhhc----cccccccccc
Confidence            88888888888888888888888773 33333 56688888887777666         4444433    3445544  3


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..|-+||++|..+|+.+.++.|++.|.+++....-+.+|+|-+|+..|+.+++.+||...+. +..+-+.|-|||+-++.
T Consensus       890 klgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~As  968 (2131)
T KOG4369|consen  890 KLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMAS  968 (2131)
T ss_pred             ccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhc
Confidence            45777888888888888888888888777766666777777777777777777777777776 67777777777777777


Q ss_pred             cCCHHHHHHHHhCCcccccccc--cCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          241 HGNWNIVSFILKSPEMENLINL--IDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~--~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      .|..++-++|+..|++   .|.  .-..-.|+|-+++..|+...+..|+.. .+.++++|+  +|.|+|.+|+.
T Consensus       969 gGyvdvg~~li~~gad---~nasPvp~T~dtalti~a~kGh~kfv~~lln~-~atv~v~Nk--kG~T~Lwla~~ 1036 (2131)
T KOG4369|consen  969 GGYVDVGNLLIAAGAD---TNASPVPNTWDTALTIPANKGHTKFVPKLLNG-DATVRVPNK--KGCTVLWLASA 1036 (2131)
T ss_pred             CCccccchhhhhcccc---cccCCCCCcCCccceeecCCCchhhhHHhhCC-ccceecccC--CCCcccchhcc
Confidence            7777777777777665   332  123344666666666666666666554 455666666  66666666654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=8.1e-23  Score=223.51  Aligned_cols=174  Identities=15%  Similarity=0.216  Sum_probs=113.4

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM  126 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~  126 (534)
                      ++.++||.||..|+.++++.|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++                   
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-------------------  583 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACN-------------------  583 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-------------------
Confidence            34556666666666666666666665553 4555666666666666666666666665543                   


Q ss_pred             hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300          127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE  206 (534)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  206 (534)
                                                   ++.+|.+|+||||.|+..|+.+++++|++.++...   ...+.++||.|+.
T Consensus       584 -----------------------------in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~  631 (823)
T PLN03192        584 -----------------------------VHIRDANGNTALWNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAK  631 (823)
T ss_pred             -----------------------------CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHH
Confidence                                         34455566677777777777777777766655322   2345677777777


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCC-CcHHHHHHh
Q 039300          207 NGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNG-NTSLHLAAM  276 (534)
Q Consensus       207 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g-~t~Lh~A~~  276 (534)
                      +|+.++++.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++   ++..|..| .||++++..
T Consensus       632 ~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd---v~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        632 RNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD---VDKANTDDDFSPTELREL  698 (823)
T ss_pred             hCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC---CCCCCCCCCCCHHHHHHH
Confidence            7777777777777776 677777777777777777777777777777765   66666666 777766643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=5e-23  Score=224.05  Aligned_cols=233  Identities=18%  Similarity=0.151  Sum_probs=175.0

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHc--CCCCCcCCccCCCcHHH-HHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEK--DSAPSSYINKAYQTPLS-IAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF  123 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~--g~~~~~~~~~~g~tpL~-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~  123 (534)
                      .++++++.|++.|+.+.|+.+++.  +.+++ ..|..|.|||| .|+.+++.++++.|+++++     .+. .|.||||.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~-~G~T~Lh~   88 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNIN-CPDRLGRSALFVAAIENENLELTELLLNLSC-----RGA-VGDTLLHA   88 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCC-CcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCC-cChHHHHH
Confidence            567899999999999999999998  66664 67889999999 8999999999999999986     222 89999999


Q ss_pred             HHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHH
Q 039300          124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL  203 (534)
Q Consensus       124 A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  203 (534)
                      |+.+ ..+.         ++.++..+...+       ..+..+              .+..   +.....+..|.||||+
T Consensus        89 A~~~-~~~~---------v~~ll~~l~~~~-------~~~~~~--------------~~~~---~~~~~~~~~G~TpLhl  134 (743)
T TIGR00870        89 ISLE-YVDA---------VEAILLHLLAAF-------RKSGPL--------------ELAN---DQYTSEFTPGITALHL  134 (743)
T ss_pred             HHhc-cHHH---------HHHHHHHHhhcc-------cccCch--------------hhhc---cccccccCCCCcHHHH
Confidence            9873 2333         444454433111       011111              1111   1111234579999999


Q ss_pred             HHHcCcHHHHHHHHHhCCCcccccc--------------CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCc
Q 039300          204 AAENGELKVLKLLINKYPDAIEIRD--------------NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNT  269 (534)
Q Consensus       204 A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t  269 (534)
                      |+.+|+.++++.|+++|++ ++.++              ..|+||||.|+..|+.+++++|+++|++   +|.+|..|+|
T Consensus       135 Aa~~~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad---in~~d~~g~T  210 (743)
T TIGR00870       135 AAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD---ILTADSLGNT  210 (743)
T ss_pred             HHHhCCHHHHHHHHhCCCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc---hhhHhhhhhH
Confidence            9999999999999999988 55442              3589999999999999999999999886   8999999999


Q ss_pred             HHHHHHhcCC---------hhHHHHhhhCc--ccch----hhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHh
Q 039300          270 SLHLAAMGLH---------SDVVFTLSRHK--SVNI----RAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAY  333 (534)
Q Consensus       270 ~Lh~A~~~~~---------~~~v~~Ll~~~--~~~~----~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~g  333 (534)
                      |||+|+..+.         ..+.+.+++..  ..+.    +..|.  +|.|||++|..       ..+.++.+.|++.+
T Consensus       211 ~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~--~g~TPL~~A~~-------~g~~~l~~lLL~~~  280 (743)
T TIGR00870       211 LLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNH--QGLTPLKLAAK-------EGRIVLFRLKLAIK  280 (743)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCC--CCCCchhhhhh-------cCCccHHHHHHHHH
Confidence            9999999872         23445554431  1233    67788  99999999998       44566777777754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.5e-22  Score=221.34  Aligned_cols=193  Identities=24%  Similarity=0.250  Sum_probs=164.6

Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHh
Q 039300           93 RLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAA  172 (534)
Q Consensus        93 g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~  172 (534)
                      +..++-..+.+.+..   . ..+++.++|+.|+..|+.++         ++.+++.    +.++|..|..|+||||+|+.
T Consensus       505 ~~l~v~~ll~~~~~~---~-~~~~~~~~L~~Aa~~g~~~~---------l~~Ll~~----G~d~n~~d~~G~TpLh~Aa~  567 (823)
T PLN03192        505 HDLNVGDLLGDNGGE---H-DDPNMASNLLTVASTGNAAL---------LEELLKA----KLDPDIGDSKGRTPLHIAAS  567 (823)
T ss_pred             ccccHHHHHhhcccc---c-CCccchhHHHHHHHcCCHHH---------HHHHHHC----CCCCCCCCCCCCCHHHHHHH
Confidence            344555566555543   1 22256788888988888887         6666654    36788999999999999999


Q ss_pred             CCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHh
Q 039300          173 SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK  252 (534)
Q Consensus       173 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~  252 (534)
                      .|+.++++.|+++|++++ .+|.+|.||||.|+..|+.++++.|++.+.. .  .+..|.++||.|+.+|+.+++++|++
T Consensus       568 ~g~~~~v~~Ll~~gadin-~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~  643 (823)
T PLN03192        568 KGYEDCVLVLLKHACNVH-IRDANGNTALWNAISAKHHKIFRILYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLK  643 (823)
T ss_pred             cChHHHHHHHHhcCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999865 7899999999999999999999999987655 2  23567899999999999999999999


Q ss_pred             CCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCC-CChHHHhHh
Q 039300          253 SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARN-NTTLEIDEM  312 (534)
Q Consensus       253 ~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g-~t~l~~a~~  312 (534)
                      +|++   +|.+|.+|+||||+|+..|+.+++++|+++ |+|++..|.  .| .||++++..
T Consensus       644 ~Gad---in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-GAdv~~~~~--~g~~t~~~l~~~  698 (823)
T PLN03192        644 QGLN---VDSEDHQGATALQVAMAEDHVDMVRLLIMN-GADVDKANT--DDDFSPTELREL  698 (823)
T ss_pred             CCCC---CCCCCCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCCCC--CCCCCHHHHHHH
Confidence            9987   899999999999999999999999999998 899999999  87 899998865

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.6e-23  Score=178.23  Aligned_cols=236  Identities=20%  Similarity=0.254  Sum_probs=205.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+.-+-.|.+.|+.++++.++...++.+.            ..|.+|.+++|.|+-.++...+..++.+|+..+ ..+-
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~~------------~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgn-evs~  127 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAID------------ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGN-EVSL  127 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCCC------------CCCchhhhhhhhcCCCCCcceeeeeecccccCC-cccc
Confidence            367778888899999988888877665443            367789999999999999999999999987664 5677


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      -+.+|+.+++...+.+.+..+.++.   .|..|. .|.|||.+|+..|+...         ++.+++..    ++++...
T Consensus       128 ~p~s~~slsVhql~L~~~~~~~~n~---VN~~De-~GfTpLiWAaa~G~i~v---------V~fLL~~G----Adp~~lg  190 (296)
T KOG0502|consen  128 MPWSPLSLSVHQLHLDVVDLLVNNK---VNACDE-FGFTPLIWAAAKGHIPV---------VQFLLNSG----ADPDALG  190 (296)
T ss_pred             ccCChhhHHHHHHHHHHHHHHhhcc---ccCccc-cCchHhHHHHhcCchHH---------HHHHHHcC----CChhhhh
Confidence            8999999999998888887777654   456666 99999999999999999         77777764    6777778


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ....|+|.+|++.|..++|++|++++.+++ ..|.+|-|||.+|++.++.++++.|++.|++ ++..|..|.+++..|+.
T Consensus       191 k~resALsLAt~ggytdiV~lLL~r~vdVN-vyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAVa  268 (296)
T KOG0502|consen  191 KYRESALSLATRGGYTDIVELLLTREVDVN-VYDWNGGTPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVA  268 (296)
T ss_pred             hhhhhhHhHHhcCChHHHHHHHHhcCCCcc-eeccCCCceeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHH
Confidence            888999999999999999999999999876 7899999999999999999999999999999 89999999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccccCCCCCcHHH
Q 039300          241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLH  272 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh  272 (534)
                      .|+. +|+..+++...   .+.+|+.-.||+|
T Consensus       269 lGyr-~Vqqvie~h~l---kl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  269 LGYR-IVQQVIEKHAL---KLCQDSEKRTPLH  296 (296)
T ss_pred             hhhH-HHHHHHHHHHH---HHhhcccCCCCCC
Confidence            9988 88888887554   7888988888886

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=5.3e-23  Score=204.45  Aligned_cols=213  Identities=21%  Similarity=0.296  Sum_probs=170.0

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      +|-|+||.||.+|+.++++.|+++-+             +++..|..|.+|||+|+.+|+.|+|+.++.++ +..+..+.
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea-------------~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~  113 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEA-------------LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNI  113 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchh-------------hhhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccc
Confidence            48899999999999999999999844             55578899999999999999999999999999 54568899


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChh----hh
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKD----LI  156 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~  156 (534)
                      +|.||||.|+..||.+++.+|++++++ +...+. .+.|+|..|++-|..++         ++.+++.......    .-
T Consensus       114 e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nn-s~~t~ldlA~qfgr~~V---------vq~ll~~~~~~~~~~~~~~  182 (854)
T KOG0507|consen  114 ENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNN-SKETVLDLASRFGRAEV---------VQMLLQKKFPVQSSLRVGD  182 (854)
T ss_pred             cCcCccchhhhhcchHHHHHHHhcCCC-ccccCc-ccccHHHHHHHhhhhHH---------HHHHhhhccchhhcccCCC
Confidence            999999999999999999999999998 344444 88999999999999888         6655554111100    02


Q ss_pred             hcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHH
Q 039300          157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH  236 (534)
Q Consensus       157 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  236 (534)
                      ..++..+.+|||.|+++|+.++++.|++.|.+++...  +.-|+||.|+..|..++|+.|++.|.. ...+|.+|+|+|.
T Consensus       183 ~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t--~~gtalheaalcgk~evvr~ll~~gin-~h~~n~~~qtald  259 (854)
T KOG0507|consen  183 IKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTT--EDGTALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALD  259 (854)
T ss_pred             CCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccc--ccchhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHH
Confidence            2344556778888888888888888888888766432  345788888888888888888888877 6778888888877


Q ss_pred             HHHhc
Q 039300          237 VAAKH  241 (534)
Q Consensus       237 ~A~~~  241 (534)
                      +-...
T Consensus       260 il~d~  264 (854)
T KOG0507|consen  260 IIIDL  264 (854)
T ss_pred             HHHhc
Confidence            66543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.89  E-value=1.9e-23  Score=213.45  Aligned_cols=277  Identities=22%  Similarity=0.227  Sum_probs=239.3

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |-+||.+|+-.||..+|+.|+.+-+++..            ..|..++|+|-+||..|+.++|++||..|++.. .+|..
T Consensus       790 gf~plImaatagh~tvV~~llk~ha~vea------------Qsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvs  856 (2131)
T KOG4369|consen  790 GFVPLIMAATAGHITVVQDLLKAHADVEA------------QSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVS  856 (2131)
T ss_pred             cchhhhhhcccCchHHHHHHHhhhhhhhh------------hcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchh
Confidence            67999999999999999999999888775            478899999999999999999999999998875 67888


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc-c
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL-D  160 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-d  160 (534)
                      ..|||.+|...|..++++.|+.+|+..........|..||..|..+|+.+.         ...+++.    +.++|.. .
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~a---------t~~ll~~----gsdiNaqIe  923 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAA---------TLSLLQP----GSDINAQIE  923 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHH---------HHHHhcc----cchhccccc
Confidence            999999999999999999999999886556666689999999999999887         5444443    3555543 4


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccc--ccCCCCcHHHHH
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI--RDNSDRSILHVA  238 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t~Lh~A  238 (534)
                      .+.+|+|-+|+..|+.+++.+||...+.+. .+-+.|.|||+-++..|.+|+=++|+..|+| .+.  ....-.|+|-++
T Consensus       924 TNrnTaltla~fqgr~evv~lLLa~~anve-hRaktgltplme~AsgGyvdvg~~li~~gad-~nasPvp~T~dtalti~ 1001 (2131)
T KOG4369|consen  924 TNRNTALTLALFQGRPEVVFLLLAAQANVE-HRAKTGLTPLMEMASGGYVDVGNLLIAAGAD-TNASPVPNTWDTALTIP 1001 (2131)
T ss_pred             cccccceeeccccCcchHHHHHHHHhhhhh-hhcccCCcccchhhcCCccccchhhhhcccc-cccCCCCCcCCccceee
Confidence            456899999999999999999999988765 6778999999999999999999999999998 333  233455899999


Q ss_pred             HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +..|+.+.++.|+...+.   +..+++.|+|+|.+|+..|+...+..|+++ ++|.+..|+  ...+++.-|.+
T Consensus      1002 a~kGh~kfv~~lln~~at---v~v~NkkG~T~Lwla~~Gg~lss~~il~~~-~ad~d~qdn--r~~S~~maafR 1069 (2131)
T KOG4369|consen 1002 ANKGHTKFVPKLLNGDAT---VRVPNKKGCTVLWLASAGGALSSCPILVSS-VADADQQDN--RTNSRTMAAFR 1069 (2131)
T ss_pred             cCCCchhhhHHhhCCccc---eecccCCCCcccchhccCCccccchHHhhc-ccChhhhhc--ccccccHHHHH
Confidence            999999999999987665   788899999999999999999999999998 799999998  77777766543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=6.6e-22  Score=190.33  Aligned_cols=230  Identities=21%  Similarity=0.285  Sum_probs=156.4

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcH
Q 039300            6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         6 Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tp   85 (534)
                      +.-||..|+.+-|+.|+..|++++             ..|.+|.|+||-||...+.+||++|+++|++++ ..|..|+||
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~-------------~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtP  109 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPN-------------LCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTP  109 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCcc-------------ccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCc
Confidence            556888999999999999998776             489999999999999999999999999999986 679999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCc
Q 039300           86 LSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN  165 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~t  165 (534)
                      ||.|+..|+.+++++|+++|++.... +. +|..|+..+..-...++         .......             .|.+
T Consensus       110 lhaaascg~~~i~~~li~~gA~~~av-Ns-dg~~P~dl~e~ea~~~~---------l~~~~~r-------------~gi~  165 (527)
T KOG0505|consen  110 LHAAASCGYLNIVEYLIQHGANLLAV-NS-DGNMPYDLAEDEATLDV---------LETEMAR-------------QGID  165 (527)
T ss_pred             chhhcccccHHHHHHHHHhhhhhhhc-cC-CCCCccccccCcchhHH---------HHHHHHH-------------hccc
Confidence            99999999999999999999984333 22 55555544433222222         1111110             0111


Q ss_pred             HHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 039300          166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN  245 (534)
Q Consensus       166 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  245 (534)
                       + -+++                     ...-.+-|         +=++..+..|.+ .+..+..|.|.||.|+.+|..+
T Consensus       166 -i-ea~R---------------------~~~e~~ml---------~D~~q~l~~G~~-~d~~~~rG~T~lHvAaa~Gy~e  212 (527)
T KOG0505|consen  166 -I-EAAR---------------------KAEEQTML---------DDARQWLNAGAE-LDARHARGATALHVAAANGYTE  212 (527)
T ss_pred             -H-HHHh---------------------hhhHHHHH---------HHHHHHHhcccc-ccccccccchHHHHHHhhhHHH
Confidence             0 0000                     00001111         112223334444 4555555777777777777777


Q ss_pred             HHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          246 IVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       246 ~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +.++|++.+..   ++.+|.+|+||||.|+..|..+++++|+++ |++.+.++.  .|.||++++.+
T Consensus       213 ~~~lLl~ag~~---~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~--~g~~p~dv~de  273 (527)
T KOG0505|consen  213 VAALLLQAGYS---VNIKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTK--MGETPLDVADE  273 (527)
T ss_pred             HHHHHHHhccC---cccccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhh--cCCCCccchhh
Confidence            77777777665   677777777777777777777777777776 677777777  77777777765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=1.3e-21  Score=178.78  Aligned_cols=186  Identities=26%  Similarity=0.357  Sum_probs=143.2

Q ss_pred             CHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHc-
Q 039300           14 DHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDV-   92 (534)
Q Consensus        14 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~-   92 (534)
                      +++.|+..|...-.    -+.......+|.-|.+|+|+||||+.++|+++|+.||+.|....+.+|+.|.||+++|+.. 
T Consensus       238 ~pe~V~~~l~~f~a----ls~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~  313 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEA----LSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAK  313 (452)
T ss_pred             CHHHHHHHHHHHHh----cChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHh
Confidence            55666555543211    1233456677889999999999999999999999999999888889999999999998743 


Q ss_pred             ----CcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc-cCCCCcHH
Q 039300           93 ----RLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL-DWHQRNPL  167 (534)
Q Consensus        93 ----g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-d~~g~tpL  167 (534)
                          .+.++|..|...|                                                 ++|.+ ...|+|+|
T Consensus       314 lk~~~d~~vV~~LF~mg-------------------------------------------------nVNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  314 LKQPADRTVVERLFKMG-------------------------------------------------DVNAKASQHGQTAL  344 (452)
T ss_pred             hcchhhHHHHHHHHhcc-------------------------------------------------Ccchhhhhhcchhh
Confidence                1223333333222                                                 23322 23588999


Q ss_pred             HHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHH
Q 039300          168 HYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV  247 (534)
Q Consensus       168 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  247 (534)
                      ++|+.+|+.++++.||..|++++ .+|.+|.|+|++|++.||.|++++||.....++...|.+|.|+|.+|...|+.+|.
T Consensus       345 MLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  345 MLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             hhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHH
Confidence            99999999999999999999866 77889999999999999999999998877666888889999999999999999988


Q ss_pred             HHHHhC
Q 039300          248 SFILKS  253 (534)
Q Consensus       248 ~~Ll~~  253 (534)
                      -+|..+
T Consensus       424 ~mlYa~  429 (452)
T KOG0514|consen  424 VMLYAH  429 (452)
T ss_pred             HHHHHH
Confidence            888765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=2.2e-21  Score=177.38  Aligned_cols=152  Identities=26%  Similarity=0.330  Sum_probs=139.1

Q ss_pred             hhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc-----CcHHHHHHHHHhCCCccccc-c
Q 039300          155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN-----GELKVLKLLINKYPDAIEIR-D  228 (534)
Q Consensus       155 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~~~~~~~~~-d  228 (534)
                      .+|..|.+|+|+|||++.+++.++|+.||+.|.......|.-|+||+++++..     .+.++|..|.+-|.  +|.+ .
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--VNaKAs  337 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--VNAKAS  337 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC--cchhhh
Confidence            47889999999999999999999999999999887778999999999998853     56788999987654  4544 4


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHH
Q 039300          229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLE  308 (534)
Q Consensus       229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~  308 (534)
                      ..|+|+|++|+.+|+.++++.||..|++   +|.+|.+|-|+|++|+..|+.+++++||...++|....|.  +|-|+|.
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAd---VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~--DgSTAl~  412 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGAD---VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDV--DGSTALS  412 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCC---CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecC--CCchhhh
Confidence            5799999999999999999999999988   9999999999999999999999999999999999999999  9999999


Q ss_pred             HhHhh
Q 039300          309 IDEMT  313 (534)
Q Consensus       309 ~a~~~  313 (534)
                      +|.+.
T Consensus       413 IAlea  417 (452)
T KOG0514|consen  413 IALEA  417 (452)
T ss_pred             hHHhc
Confidence            99983

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=165.32  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=126.7

Q ss_pred             hhhhhcccCCCCcHHHHHHhCCCH----HHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHH---HHHHHHhCCCccc
Q 039300          153 KDLINRLDWHQRNPLHYAAASGNV----QMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKV---LKLLINKYPDAIE  225 (534)
Q Consensus       153 ~~~~~~~d~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~  225 (534)
                      +.+++..+.++.+++|.|++.|+.    +++++|++.|..+. .+|..|.||||+|+..|+.+.   +++|++.+++ ++
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in   87 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-IN   87 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CC
Confidence            456677788899999999999998    66667888888754 678899999999999988654   8999999998 88


Q ss_pred             ccc-CCCCcHHHHHHhcCCHHHHHHHHh-CCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCC
Q 039300          226 IRD-NSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARN  303 (534)
Q Consensus       226 ~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~-~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g  303 (534)
                      .+| ..|+||||+|+.+++.+++++|++ .+.+   ++.+|..|.||||+|+..++.+++++|+++ |++++.++.  .|
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~--~~  161 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVN---LGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLS--IG  161 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCccc--CC
Confidence            888 589999999999999999999995 6766   889999999999999999999999999998 799999888  65


Q ss_pred             C
Q 039300          304 N  304 (534)
Q Consensus       304 ~  304 (534)
                      .
T Consensus       162 ~  162 (166)
T PHA02743        162 L  162 (166)
T ss_pred             c
Confidence            4

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=3.9e-20  Score=151.78  Aligned_cols=142  Identities=30%  Similarity=0.346  Sum_probs=133.0

Q ss_pred             HHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 039300          166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN  245 (534)
Q Consensus       166 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  245 (534)
                      .+.+|+..+....|+.|++..++..+.+|.+|+||||.|+.+|+.++++.|+..|++ .+.+...|+||||-||+..+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchh
Confidence            356899999999999999999999999999999999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh-hHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300          246 IVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS-DVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT  313 (534)
Q Consensus       246 ~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~-~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~  313 (534)
                      ++.+|+++|++   +|+..+...||||+|+...+. ..+++|+...++++..+|+  .+.||+++|...
T Consensus       145 va~~LLqhgaD---VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn--~eeta~~iARRT  208 (228)
T KOG0512|consen  145 VAGRLLQHGAD---VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN--LEETAFDIARRT  208 (228)
T ss_pred             HHHHHHhccCc---ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC--ccchHHHHHHHh
Confidence            99999999998   999999999999999987765 6678888888999999999  999999999873

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1e-20  Score=182.21  Aligned_cols=202  Identities=23%  Similarity=0.270  Sum_probs=142.4

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      +|.|+||-+|...+.+||++|+++|+++|+             .|.+|+||||.|+..|+..++++|+.+|+++. ..|.
T Consensus        72 DglTalhq~~id~~~e~v~~l~e~ga~Vn~-------------~d~e~wtPlhaaascg~~~i~~~li~~gA~~~-avNs  137 (527)
T KOG0505|consen   72 DGLTALHQACIDDNLEMVKFLVENGANVNA-------------QDNEGWTPLHAAASCGYLNIVEYLIQHGANLL-AVNS  137 (527)
T ss_pred             ccchhHHHHHhcccHHHHHHHHHhcCCccc-------------cccccCCcchhhcccccHHHHHHHHHhhhhhh-hccC
Confidence            589999999999999999999999999985             89999999999999999999999999999986 5688


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      +|..|+.+|...-..++...-....           |.+ +..+-......+         ++.+..++. .|...+..+
T Consensus       138 dg~~P~dl~e~ea~~~~l~~~~~r~-----------gi~-iea~R~~~e~~m---------l~D~~q~l~-~G~~~d~~~  195 (527)
T KOG0505|consen  138 DGNMPYDLAEDEATLDVLETEMARQ-----------GID-IEAARKAEEQTM---------LDDARQWLN-AGAELDARH  195 (527)
T ss_pred             CCCCccccccCcchhHHHHHHHHHh-----------ccc-HHHHhhhhHHHH---------HHHHHHHHh-ccccccccc
Confidence            9999988876544444433333221           111 111111111111         333333333 445555566


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..|.|.||.|+.+|..++.++|++.|.++. .+|.+|+||||.|+..|..++.++|++++++ .+.....|.+|+.+|..
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~-~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~-~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQAGYSVN-IKDYDGWTPLHAAAHWGQEDACELLVEHGAD-MDAKTKMGETPLDVADE  273 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHHhccCcc-cccccCCCcccHHHHhhhHhHHHHHHHhhcc-cchhhhcCCCCccchhh
Confidence            567777777777777777777777777644 5677777777777777777777777777777 66667777777776654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=5.9e-19  Score=178.38  Aligned_cols=219  Identities=21%  Similarity=0.231  Sum_probs=171.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCC--------CCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChh
Q 039300           83 QTPLSIAIDVRLNDIACFIIDKSS--------ESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKD  154 (534)
Q Consensus        83 ~tpL~~A~~~g~~~iv~~Ll~~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  154 (534)
                      +.++..|...+..+...-|...+.        ...+.++. .|+|+||.|..+.+....      ..+..|++..+   .
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa-~GET~Lh~~lL~~~~~~n------~la~~LL~~~p---~  171 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGA-TGETLLHKALLNLSDGHN------ELARVLLEIFP---K  171 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccc-hhhhHHHHHHhcCchhHH------HHHHHHHHHhH---H
Confidence            367778888888887777776662        23455555 899999999986443220      11666676665   4


Q ss_pred             hhhc----ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcc--------cC--------------CCCCcHHHHHHHcC
Q 039300          155 LINR----LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYK--------RD--------------CNGATPLHLAAENG  208 (534)
Q Consensus       155 ~~~~----~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~--------~~--------------~~g~tpL~~A~~~g  208 (534)
                      .+|.    ....|.||||.|+.+.+.++|++|++.|+|+...        .|              .-|..||.+||.-+
T Consensus       172 lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n  251 (782)
T KOG3676|consen  172 LINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN  251 (782)
T ss_pred             HhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcC
Confidence            4443    3457999999999999999999999999987543        11              14778999999999


Q ss_pred             cHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300          209 ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR  288 (534)
Q Consensus       209 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  288 (534)
                      +.|++++|+++++| ++.+|.+|+|.||..+.+-..++..++++.++. .+...++..|-|||-+|++.|..++.+.+++
T Consensus       252 q~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile  329 (782)
T KOG3676|consen  252 QPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILE  329 (782)
T ss_pred             CHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence            99999999999999 999999999999999999999999999999987 6677888999999999999999999999998


Q ss_pred             C-c------------ccchhhccccCCCCChHHHhHhh
Q 039300          289 H-K------------SVNIRAKNRSARNNTTLEIDEMT  313 (534)
Q Consensus       289 ~-~------------~~~~~~~n~~~~g~t~l~~a~~~  313 (534)
                      . +            .-+.+..|.-++-.+.|.+....
T Consensus       330 ~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  330 RRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             hhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            7 2            12344444422445677776653

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.5e-19  Score=159.35  Aligned_cols=130  Identities=20%  Similarity=0.282  Sum_probs=115.7

Q ss_pred             hhhcccCCCCcHHHHHHhCCCHHHHHHHHhh------chhhhcccCCCCCcHHHHHHHcCc----HHHHHHHHHhCCCcc
Q 039300          155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEA------SKQLAYKRDCNGATPLHLAAENGE----LKVLKLLINKYPDAI  224 (534)
Q Consensus       155 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~  224 (534)
                      .++..|..|.||||+|+..|+.++++.|+..      |+++ +.+|..|.||||+|+..|+    .++++.|++.+++ +
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-i   90 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-I   90 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-C
Confidence            3566788999999999999999999998643      3544 4788899999999999998    5899999999998 7


Q ss_pred             ccccC-CCCcHHHHHHhcCCHHHHHHHHhC-CcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          225 EIRDN-SDRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       225 ~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      +.+|. .|+||||+|+..++.+++++|++. +.+   ++.+|.+|.||||+|+..++.+++++|++.
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~---~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID---LHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            88885 899999999999999999999974 665   889999999999999999999999999986

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=6.8e-20  Score=159.34  Aligned_cols=137  Identities=18%  Similarity=0.238  Sum_probs=113.2

Q ss_pred             ChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhch------hhhcccCCCCCcHHHHHHHcCcH---HHHHHHHHhCCC
Q 039300          152 NKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK------QLAYKRDCNGATPLHLAAENGEL---KVLKLLINKYPD  222 (534)
Q Consensus       152 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~------~~~~~~~~~g~tpL~~A~~~g~~---~~v~~Ll~~~~~  222 (534)
                      .....+..|.+|.||||+|+..|+.  +.++...+.      .....+|..|.||||+|+..|+.   ++++.|++.+++
T Consensus         6 ~~~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad   83 (154)
T PHA02736          6 EIIFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD   83 (154)
T ss_pred             hhhHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC
Confidence            3356788899999999999999983  333332222      12234688999999999999987   468899999998


Q ss_pred             cccccc-CCCCcHHHHHHhcCCHHHHHHHHhC-CcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchh
Q 039300          223 AIEIRD-NSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR  295 (534)
Q Consensus       223 ~~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~  295 (534)
                       ++.+| ..|+||||+|+..++.+++++|++. +.+   ++.+|..|.||||+|+..++.+++++|+++ |++.+
T Consensus        84 -in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d---~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~-ga~~~  153 (154)
T PHA02736         84 -INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN---MEILNYAFKTPYYVACERHDAKMMNILRAK-GAQCK  153 (154)
T ss_pred             -ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence             88888 5899999999999999999999974 665   899999999999999999999999999987 56543

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=1.7e-19  Score=159.04  Aligned_cols=132  Identities=20%  Similarity=0.288  Sum_probs=116.6

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHh------CCCccccccCCCCcHHHHHHhcCC----HHHHHHHHhCCccccccc
Q 039300          192 KRDCNGATPLHLAAENGELKVLKLLINK------YPDAIEIRDNSDRSILHVAAKHGN----WNIVSFILKSPEMENLIN  261 (534)
Q Consensus       192 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~~~  261 (534)
                      .+|..|.||||.|++.|+.++++.|+..      +++ ++.+|..|+||||+|+..|+    .+++++|++.+++   +|
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---in   91 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---IN   91 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---CC
Confidence            4677899999999999999999998643      344 88899999999999999998    5899999999877   89


Q ss_pred             ccCC-CCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300          262 LIDR-NGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       262 ~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                      .+|. +|+||||+|+..++.+++++|+...+++++.+|.  .|.|||++|..       .....+.++|++.++..
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~--~g~tpL~~A~~-------~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA--DNKSPFELAID-------NEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC--CCCCHHHHHHH-------CCCHHHHHHHHHHHHHh
Confidence            9885 9999999999999999999999866899999999  99999999998       44568888888887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=4.2e-19  Score=167.52  Aligned_cols=152  Identities=15%  Similarity=0.162  Sum_probs=108.6

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      ++||.|++.|+.+++++|+++|++++....         ..|..|.||||+|+..|+.+++++|+++|++++...+..|.
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~---------~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKLGADPEAPFP---------LSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCccccCc---------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            457777777888888888888888774100         12467888888888888888888888888887633456788


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCC
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ  163 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g  163 (534)
                      ||||.|+..|+.+++++|++.|++ ++..+. .|.||||.|+..++.++         +..+.         -+..+..+
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAd-in~kd~-~G~TpL~~A~~~~~~~~---------~~~~~---------~~~~~~~~  165 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGAD-INIQTN-DMVTPIELALMICNNFL---------AFMIC---------DNEISNFY  165 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC-CCCCHHHHHHHhCChhH---------HHHhc---------CCcccccc
Confidence            888888888888888888888887 555665 78888888887766654         21111         02245556


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhhch
Q 039300          164 RNPLHYAAASGNVQMVQRLLEASK  187 (534)
Q Consensus       164 ~tpL~~A~~~g~~~~v~~Ll~~~~  187 (534)
                      .+|++++   ++.++++.|+.++.
T Consensus       166 ~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        166 KHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             cChhhhh---ccHHHHHHHHHHHH
Confidence            6777754   46777777777766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=5.6e-19  Score=154.92  Aligned_cols=139  Identities=17%  Similarity=0.191  Sum_probs=121.2

Q ss_pred             CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHH---HHHHHhhchhhhcc
Q 039300          116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM---VQRLLEASKQLAYK  192 (534)
Q Consensus       116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~~  192 (534)
                      ++.+++|.|+..++.+.         +..+++.+.+.+..++..|..|+||||+|+..|+.+.   +++|++.|++++ .
T Consensus        19 ~~~~~l~~a~~~g~~~~---------l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin-~   88 (166)
T PHA02743         19 DEQNTFLRICRTGNIYE---------LMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN-A   88 (166)
T ss_pred             CCCcHHHHHHHcCCHHH---------HHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC-C
Confidence            67789999999999876         6666666666677889999999999999999988654   899999999876 5


Q ss_pred             cC-CCCCcHHHHHHHcCcHHHHHHHHH-hCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCC
Q 039300          193 RD-CNGATPLHLAAENGELKVLKLLIN-KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGN  268 (534)
Q Consensus       193 ~~-~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~  268 (534)
                      ++ ..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++.+++++|++++++   ++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAV---CDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcccCCc
Confidence            66 589999999999999999999995 6777 889999999999999999999999999999887   788777764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.6e-18  Score=163.59  Aligned_cols=157  Identities=17%  Similarity=0.146  Sum_probs=129.6

Q ss_pred             hhcccCCCCc-HHHHHHhCCCHHHHHHHHhhchhhhcc---cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccc-cCC
Q 039300          156 INRLDWHQRN-PLHYAAASGNVQMVQRLLEASKQLAYK---RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIR-DNS  230 (534)
Q Consensus       156 ~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~  230 (534)
                      +..+|..|.| +||.|+..|+.+++++|+++|+++...   .+..|.||||+|+..++.+++++|+++|++ ++.+ +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCC
Confidence            4556777776 566777789999999999999987632   246899999999999999999999999998 7875 468


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHh
Q 039300          231 DRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEID  310 (534)
Q Consensus       231 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a  310 (534)
                      |.||||+|+..++.+++++|++.|++   ++.+|.+|.||||+|+..++.+++..+...   .   .+.  .+.+|..+.
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAd---in~kd~~G~TpL~~A~~~~~~~~~~~~~~~---~---~~~--~~~~~~~~~  172 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGAD---INIQTNDMVTPIELALMICNNFLAFMICDN---E---ISN--FYKHPKKIL  172 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhCChhHHHHhcCC---c---ccc--cccChhhhh
Confidence            99999999999999999999999987   899999999999999999999887666432   2   344  677887765


Q ss_pred             HhhhhchHHHHHHhHHHHHHHHhh
Q 039300          311 EMTRADVTEVQKHLTLKALKTAYA  334 (534)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~L~~~ga  334 (534)
                      .          ..++.++|+.++.
T Consensus       173 ~----------n~ei~~~Lish~v  186 (300)
T PHA02884        173 I----------NFDILKILVSHFI  186 (300)
T ss_pred             c----------cHHHHHHHHHHHH
Confidence            3          2456677777776

>PF13962 PGG: Domain of unknown function

Probab=99.78  E-value=1.2e-18  Score=141.32  Aligned_cols=101  Identities=40%  Similarity=0.524  Sum_probs=83.7

Q ss_pred             hhhhHhhhhhhHHHHHHHHHHHHHhhccCCCccCCCCCCCCcccccchh------------HHHHHHHHHHHHHHHhhcc
Q 039300          354 GEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRA------------TMTSTMAAAAIVFWSFWRS  421 (534)
Q Consensus       354 ~~~~k~~~~~llvva~liatv~f~a~~~~Pgg~~~~~~~~g~~~~~~~~------------a~~~s~~~~~~~~~~~~~~  421 (534)
                      +||.++++++++++|+|||||||+|+++||||+|+++++.|.|++.+++            +|++|++++++++ ..+..
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~-~~~~~   79 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI-SGLDD   79 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhh
Confidence            3689999999999999999999999999999999986678999986543            7778888877776 33321


Q ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039300          422 KTESLLDTLPLAIGFTWIALISMTLVFMTGLYAV  455 (534)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~s~~~m~~af~~~~~~~  455 (534)
                      ..+..+..+..+..++++++.+|++||++|+|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   80 FRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2445556788999999999999999999999864

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.6e-19  Score=160.04  Aligned_cols=152  Identities=24%  Similarity=0.338  Sum_probs=122.8

Q ss_pred             hCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHH
Q 039300          172 ASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL  251 (534)
Q Consensus       172 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll  251 (534)
                      +.|+.-.+++-++....+.+..|..|.+|||+||+.|+..+++.|+.+|+. ++..+....||||+|+.+|+.++++.|+
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHH
Confidence            334433344444444444567888999999999999999999999999988 8888888889999999999999999999


Q ss_pred             hCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHH
Q 039300          252 KSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKT  331 (534)
Q Consensus       252 ~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~  331 (534)
                      +..++   +|+.+..|+|||||||..|+..+.+-|+.. |+-+++.|+  +|.||++.|..       .-+..+.+.-.+
T Consensus        88 ~~kad---vnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk--~g~tpldkakp-------~l~~~l~e~aek  154 (448)
T KOG0195|consen   88 SRKAD---VNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNK--KGMTPLDKAKP-------MLKNTLLEIAEK  154 (448)
T ss_pred             HHhcc---cchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeeccc--CCCCchhhhch-------HHHHHHHHHHHH
Confidence            98776   999999999999999999999999999987 789999999  99999998876       334455555566


Q ss_pred             Hhhhcc
Q 039300          332 AYAKRA  337 (534)
Q Consensus       332 ~ga~~~  337 (534)
                      .|...+
T Consensus       155 ~gq~~n  160 (448)
T KOG0195|consen  155 HGQSPN  160 (448)
T ss_pred             hCCCCC
Confidence            665544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=9e-19  Score=152.25  Aligned_cols=133  Identities=19%  Similarity=0.193  Sum_probs=110.1

Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHHhC------CCccccccCCCCcHHHHHHhcCCHH---HHHHHHhCCccccccc
Q 039300          191 YKRDCNGATPLHLAAENGELKVLKLLINKY------PDAIEIRDNSDRSILHVAAKHGNWN---IVSFILKSPEMENLIN  261 (534)
Q Consensus       191 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~------~~~~~~~d~~g~t~Lh~A~~~~~~~---~~~~Ll~~~~~~~~~~  261 (534)
                      ...|..|.||||+|++.|+.  ++++...+      +..+..+|..|+||||+|+..|+.+   ++++|++.|++   +|
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---in   85 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD---IN   85 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC---cc
Confidence            35678999999999999984  33332221      1124567899999999999999874   68899999887   89


Q ss_pred             ccC-CCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhcc
Q 039300          262 LID-RNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA  337 (534)
Q Consensus       262 ~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  337 (534)
                      .+| .+|+||||+|+..++.+++++|+.+.+++++.+|.  .|.|||++|..       .....++++|++.|++..
T Consensus        86 ~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~--~g~tpL~~A~~-------~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         86 GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY--AFKTPYYVACE-------RHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC--CCCCHHHHHHH-------cCCHHHHHHHHHcCCCCC
Confidence            998 59999999999999999999999876899999999  99999999997       456778899999987653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=3.3e-16  Score=158.73  Aligned_cols=165  Identities=23%  Similarity=0.263  Sum_probs=140.4

Q ss_pred             hhhhcccCCCCcHHHHHHh---CCCHHHHHHHHhhchhhhcc----cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccc
Q 039300          154 DLINRLDWHQRNPLHYAAA---SGNVQMVQRLLEASKQLAYK----RDCNGATPLHLAAENGELKVLKLLINKYPDAIEI  226 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~---~g~~~~v~~Ll~~~~~~~~~----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  226 (534)
                      ...+.+...|.|.||.|.-   .++.++++.|++.-+...+.    ....|.||||+|+.+.+.++|+.|++.|+| ++.
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~a  212 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGAD-VHA  212 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCc-hhh
Confidence            3466777889999999986   34568999999887644332    345899999999999999999999999998 433


Q ss_pred             c---------cC--------------CCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHH
Q 039300          227 R---------DN--------------SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV  283 (534)
Q Consensus       227 ~---------d~--------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  283 (534)
                      +         |.              .|+.||.+|+--++++++++|++++++   +|++|.+|||.||..+..-..++.
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd---~~aqDS~GNTVLH~lVi~~~~~My  289 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD---PNAQDSNGNTVLHMLVIHFVTEMY  289 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC---CCccccCCChHHHHHHHHHHHHHH
Confidence            2         21              377899999999999999999999888   999999999999999999888999


Q ss_pred             HHhhhCcccc--hhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHH
Q 039300          284 FTLSRHKSVN--IRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTA  332 (534)
Q Consensus       284 ~~Ll~~~~~~--~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~  332 (534)
                      ++++++ |++  ...+|+  +|.|||.+|+.       ..+.++.+.+++.
T Consensus       290 ~~~L~~-ga~~l~~v~N~--qgLTPLtLAak-------lGk~emf~~ile~  330 (782)
T KOG3676|consen  290 DLALEL-GANALEHVRNN--QGLTPLTLAAK-------LGKKEMFQHILER  330 (782)
T ss_pred             HHHHhc-CCCcccccccc--CCCChHHHHHH-------hhhHHHHHHHHHh
Confidence            999998 677  889999  99999999998       6677777777766

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.71  E-value=1.1e-16  Score=131.61  Aligned_cols=146  Identities=22%  Similarity=0.278  Sum_probs=122.6

Q ss_pred             hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300          119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGA  198 (534)
Q Consensus       119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  198 (534)
                      ..+..|+..+....         ++.|++...   ..+|.+|.+|+||||-|+.+|+.++++.|+..|++.. .+...|+
T Consensus        65 rl~lwaae~nrl~e---------V~~lL~e~a---n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GW  131 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTE---------VQRLLSEKA---NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGW  131 (228)
T ss_pred             HHHHHHHhhccHHH---------HHHHHHhcc---ccccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCc
Confidence            34566777666666         777887766   7899999999999999999999999999999999866 6677999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH-HHHHHHhCCcccccccccCCCCCcHHHHHHhc
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN-IVSFILKSPEMENLINLIDRNGNTSLHLAAMG  277 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~-~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~  277 (534)
                      ||||.||+..+.+++-.|+++|+| ++.......||||+||..++.. .+++|+.....  ....++..+.||+.+|-+.
T Consensus       132 TPLhSAckWnN~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi--~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  132 TPLHSACKWNNFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYI--HPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             cchhhhhcccchhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhcccc--ChhhhcCccchHHHHHHHh
Confidence            999999999999999999999999 8999999999999999887654 45666654322  1556678999999999887


Q ss_pred             CCh
Q 039300          278 LHS  280 (534)
Q Consensus       278 ~~~  280 (534)
                      +-.
T Consensus       209 ~~s  211 (228)
T KOG0512|consen  209 SMS  211 (228)
T ss_pred             hhh
Confidence            654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.70  E-value=3.4e-17  Score=145.39  Aligned_cols=120  Identities=28%  Similarity=0.417  Sum_probs=111.5

Q ss_pred             CChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC
Q 039300          151 TNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS  230 (534)
Q Consensus       151 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~  230 (534)
                      +...+.|..|..|.+|||+|++.|+..+++.|+.+|+.++ ..+....||||+|+..|+-++|+.|++..+| ++..+..
T Consensus        22 ~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn-~tnmgddtplhlaaahghrdivqkll~~kad-vnavneh   99 (448)
T KOG0195|consen   22 DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN-STNMGDDTPLHLAAAHGHRDIVQKLLSRKAD-VNAVNEH   99 (448)
T ss_pred             CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccc-cccCCCCcchhhhhhcccHHHHHHHHHHhcc-cchhhcc
Confidence            3346788899999999999999999999999999999876 6677888999999999999999999999999 9999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHH
Q 039300          231 DRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA  275 (534)
Q Consensus       231 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~  275 (534)
                      |+||||+||..|+..+.+-|+..|+.   ++..++.|.|||..|-
T Consensus       100 gntplhyacfwgydqiaedli~~ga~---v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGAA---VNICNKKGMTPLDKAK  141 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhccce---eeecccCCCCchhhhc
Confidence            99999999999999999999999887   8999999999998773

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=3.1e-16  Score=122.57  Aligned_cols=84  Identities=24%  Similarity=0.389  Sum_probs=76.9

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcH
Q 039300            6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         6 Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tp   85 (534)
                      ||+||+.|+.+++++|++.+.+++                . |+||||+|+.+|+.+++++|++.|+++. ..|..|.||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~----------------~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~   62 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN----------------L-GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTA   62 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT----------------S-SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC----------------C-CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCH
Confidence            899999999999999999987654                1 8999999999999999999999999885 678999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCC
Q 039300           86 LSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      ||+|+..|+.+++++|+++|++
T Consensus        63 L~~A~~~~~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   63 LHYAAENGNLEIVKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTHHHHHHHHHHTTT-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=2.5e-16  Score=123.15  Aligned_cols=89  Identities=42%  Similarity=0.640  Sum_probs=66.8

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300          201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS  280 (534)
Q Consensus       201 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  280 (534)
                      ||.|++.|+.++++.|++.+.+ ++.    |+||||+|+.+|+.+++++|++.+.+   ++.+|.+|+||||+|+.+++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHcCCH
Confidence            6778888888888888877665 333    77788888888888888888887766   777778888888888888888


Q ss_pred             hHHHHhhhCcccchhhcc
Q 039300          281 DVVFTLSRHKSVNIRAKN  298 (534)
Q Consensus       281 ~~v~~Ll~~~~~~~~~~n  298 (534)
                      +++++|+++ |++++.+|
T Consensus        73 ~~~~~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   73 EIVKLLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHHHHHT-TT-TTSS-
T ss_pred             HHHHHHHHc-CCCCCCcC
Confidence            888888877 67777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=1.9e-15  Score=126.26  Aligned_cols=124  Identities=43%  Similarity=0.659  Sum_probs=112.1

Q ss_pred             ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300          159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA  238 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  238 (534)
                      .|..|.||||.|+..++.++++.|++.+.+. ...+..|.+|+|.|+..++.++++.|++.++. ++..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence            4567999999999999999999999999875 46788999999999999999999999999976 778889999999999


Q ss_pred             HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      +..++.+++++|++.+..   .+..|..|.||+|+|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999998755   7888899999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.58  E-value=2.3e-14  Score=119.70  Aligned_cols=113  Identities=42%  Similarity=0.657  Sum_probs=105.1

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHH
Q 039300          193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH  272 (534)
Q Consensus       193 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh  272 (534)
                      .|..|.||||.|++.++.++++.|++.+++ .+..+..|.+|+|.|+..++.+++++|++.+..   ++..+..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---VNARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHH
Confidence            467899999999999999999999999988 588999999999999999999999999999864   7888899999999


Q ss_pred             HHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          273 LAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       273 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +|+..++.+++++|++. +.+.+..+.  .|.||++++..
T Consensus        79 ~a~~~~~~~~~~~L~~~-~~~~~~~~~--~~~~~l~~~~~  115 (126)
T cd00204          79 LAARNGNLDVVKLLLKH-GADVNARDK--DGRTPLHLAAK  115 (126)
T ss_pred             HHHHcCcHHHHHHHHHc-CCCCcccCC--CCCCHHHHHHh
Confidence            99999999999999997 678888888  99999999987

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=1.1e-14  Score=106.82  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=93.0

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      ||+--..+++++|.++-||..+..|-++|.              -..|++|||+|+-.|+.+++++|+..|+++. ..|+
T Consensus         1 m~d~~~~W~vkNG~~DeVk~~v~~g~nVn~--------------~~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDK   65 (117)
T KOG4214|consen    1 MGDMSVAWNVKNGEIDEVKQSVNEGLNVNE--------------IYGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDK   65 (117)
T ss_pred             CcchhHhhhhccCcHHHHHHHHHccccHHH--------------HhCCcccchHhhhcchHHHHHHHHHhccccC-Cccc
Confidence            577788999999999999999999988873              3479999999999999999999999999986 6799


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHH
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF  124 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A  124 (534)
                      .|-|||--|+..||.++|++|+++|++. ... .|+|.+.+..+
T Consensus        66 ygITPLLsAvwEGH~~cVklLL~~GAdr-t~~-~PdG~~~~eat  107 (117)
T KOG4214|consen   66 YGITPLLSAVWEGHRDCVKLLLQNGADR-TIH-APDGTALIEAT  107 (117)
T ss_pred             cCCcHHHHHHHHhhHHHHHHHHHcCccc-cee-CCCchhHHhhc
Confidence            9999999999999999999999999983 223 33787766543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=3.7e-14  Score=104.05  Aligned_cols=106  Identities=24%  Similarity=0.264  Sum_probs=90.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL  278 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~  278 (534)
                      .-+.+++++|..+-|+..+..+-+ ++.. ..|++|||+|+.+|+.+++++|+..|++   ++.+|+.|-|||--|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n-Vn~~-~ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN-VNEI-YGGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc-HHHH-hCCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHHHHh
Confidence            346788899999999988888855 4433 3789999999999999999999999887   8999999999999999999


Q ss_pred             ChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          279 HSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       279 ~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +.++|++|++. |+|-..+..  +|.+.++.+.+
T Consensus        79 H~~cVklLL~~-GAdrt~~~P--dG~~~~eate~  109 (117)
T KOG4214|consen   79 HRDCVKLLLQN-GADRTIHAP--DGTALIEATEE  109 (117)
T ss_pred             hHHHHHHHHHc-CcccceeCC--CchhHHhhccH
Confidence            99999999998 788888888  88888776654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=8e-13  Score=123.00  Aligned_cols=130  Identities=35%  Similarity=0.462  Sum_probs=120.6

Q ss_pred             hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc-----HHHHHHHHHhCC--Ccccccc
Q 039300          156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE-----LKVLKLLINKYP--DAIEIRD  228 (534)
Q Consensus       156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~--~~~~~~d  228 (534)
                      ....+..+.++++.++..+..+++++++..|.++ +.++..|.||||+|+..++     .++++.|++.++  +..+..|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            4455667899999999999999999999999998 6899999999999999999     999999999999  6688889


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      ..|+||||+|+..|+.+++++|++.+++   ++..+..|.|++|+|+..++.++++.++..
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            9999999999999999999999999887   788899999999999999999999999886

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=1.3e-13  Score=95.97  Aligned_cols=54  Identities=33%  Similarity=0.571  Sum_probs=46.0

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHH
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILV   68 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll   68 (534)
                      |.||||+||+.|+.+++++|+++|.+++.             +|.+|.||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~-------------~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA-------------QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--------------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC-------------CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999998884             7999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.39  E-value=7.7e-12  Score=116.36  Aligned_cols=131  Identities=31%  Similarity=0.406  Sum_probs=117.0

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-----HHHHHHHHhCCcccccccccCCC
Q 039300          192 KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-----WNIVSFILKSPEMENLINLIDRN  266 (534)
Q Consensus       192 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~d~~  266 (534)
                      ..+..+.+++|.++..+..++++.++..+.+ ++.+|..|.||||+|+.+++     .+++++|++.++.....+.+|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            4566789999999999999999999999999 59999999999999999999     99999999998821237778999


Q ss_pred             CCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHh
Q 039300          267 GNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAY  333 (534)
Q Consensus       267 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~g  333 (534)
                      |+||||+|+..|+.++++.|++. |++++.+|.  .|.|+++.+..       .......+.+.+.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~--~g~t~l~~a~~-------~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEA-GADPNSRNS--YGVTALDPAAK-------NGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhc-CCCCccccc--CCCcchhhhcc-------cchHHHHHHHHhcC
Confidence            99999999999999999999998 789999999  99999999998       55666677777665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.34  E-value=2.6e-12  Score=89.36  Aligned_cols=54  Identities=41%  Similarity=0.494  Sum_probs=31.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          231 DRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       231 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      |+||||+|++.|+.+++++|++.+.+   +|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d---in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD---INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG---TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666554   6666666666666666666666666654

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.2e-12  Score=91.48  Aligned_cols=48  Identities=38%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             ccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHh
Q 039300          260 INLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEID  310 (534)
Q Consensus       260 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a  310 (534)
                      +|.+|..|+||||+|+.+|+.+++++|++. |+|++.+|.  +|+||+|+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~-g~d~~~~d~--~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQN-GADPNAKDK--DGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHC-T--TT---T--TS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHC-cCCCCCCcC--CCCCHHHhC
Confidence            555566666666666666666666666633 556666666  566666554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.31  E-value=6.6e-12  Score=133.87  Aligned_cols=86  Identities=27%  Similarity=0.408  Sum_probs=81.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCc
Q 039300            5 PLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQT   84 (534)
Q Consensus         5 ~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~t   84 (534)
                      .|+.||..|+.+.++.|++.|+++|             .+|..|+||||+|+.+|+.++|++|+++|++++ ..|..|.|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin-------------~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~T  150 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPN-------------CRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKT  150 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-------------CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCC
Confidence            5889999999999999999999887             489999999999999999999999999999985 78999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhc
Q 039300           85 PLSIAIDVRLNDIACFIIDK  104 (534)
Q Consensus        85 pL~~A~~~g~~~iv~~Ll~~  104 (534)
                      |||+|+..|+.+++++|+++
T Consensus       151 pLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        151 PLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             HHHHHHHCCcHHHHHHHHhC
Confidence            99999999999999999998

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.31  E-value=6.6e-12  Score=133.87  Aligned_cols=104  Identities=25%  Similarity=0.339  Sum_probs=64.1

Q ss_pred             HHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 039300          166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN  245 (534)
Q Consensus       166 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  245 (534)
                      .|+.|+..|+.+.++.|++.|++++ .+|..|.||||+|+.+|+.+++++|++.|++ ++.+|..|+||||+|+.+|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHH
Confidence            4566666666666666666666543 4566666666666666666666666666666 5666666666666666666666


Q ss_pred             HHHHHHhC-------CcccccccccCCCCCcHHHHH
Q 039300          246 IVSFILKS-------PEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       246 ~~~~Ll~~-------~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                      ++++|+++       +++   .+..+..|.+|+..+
T Consensus       163 iv~~Ll~~~~~~~~~ga~---~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGAN---AKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHhCCCcccccCCC---CCccccCCCCccchh
Confidence            66666665       332   444555555554433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.4e-12  Score=91.10  Aligned_cols=56  Identities=30%  Similarity=0.477  Sum_probs=33.8

Q ss_pred             HHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300          216 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       216 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                      |+++++..++..|..|+||||+|+.+|+.+++++|++.+.+   ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            56777556999999999999999999999999999988877   999999999999997

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=1.1e-11  Score=119.25  Aligned_cols=103  Identities=22%  Similarity=0.215  Sum_probs=90.0

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcH
Q 039300            6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         6 Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tp   85 (534)
                      |.-|+..|-+|+|+..+...-|+.             ..|.+|-|+||-|+..||.+||++|++.|++++ ..|.+|+||
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpS-------------qpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTP  619 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPS-------------QPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTP  619 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCC-------------CCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCch
Confidence            567899999999999998866655             489999999999999999999999999999996 789999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300           86 LSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF  123 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~  123 (534)
                      ||+|+..++..+.+.|++.|+......-. ++.|+..-
T Consensus       620 LHCAASCNnv~~ckqLVe~GaavfAsTlS-DmeTa~eK  656 (752)
T KOG0515|consen  620 LHCAASCNNVPMCKQLVESGAAVFASTLS-DMETAAEK  656 (752)
T ss_pred             hhhhhhcCchHHHHHHHhccceEEeeecc-cccchhhh
Confidence            99999999999999999999985544444 67776544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.24  E-value=5.6e-11  Score=106.21  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=104.5

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCC
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY   82 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g   82 (534)
                      +.||.-|...|+.+-...||+..-++|             .+|..|-|||.-|+..|+.++|+.|++.|+|++...+..+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn-------------~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~   79 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVN-------------QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTL   79 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhh-------------ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccccc
Confidence            468999999999999999998744444             5999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300           83 QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL  132 (534)
Q Consensus        83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (534)
                      .||||.|+.+|+.++-+.|++.|+. ....+. -|+|+-..|+.-|+.++
T Consensus        80 YTpLmFAALSGn~dvcrllldaGa~-~~~vNs-vgrTAaqmAAFVG~H~C  127 (396)
T KOG1710|consen   80 YTPLMFAALSGNQDVCRLLLDAGAR-MYLVNS-VGRTAAQMAAFVGHHEC  127 (396)
T ss_pred             ccHHHHHHHcCCchHHHHHHhccCc-cccccc-hhhhHHHHHHHhcchHH
Confidence            9999999999999999999999998 444454 89999999999999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=4.5e-11  Score=115.16  Aligned_cols=121  Identities=24%  Similarity=0.212  Sum_probs=99.7

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300          201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS  280 (534)
Q Consensus       201 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  280 (534)
                      |.-|+..|.+|+|+..+..-.| ....+..|-|+||-|+-.|+.+||+||++.|++   +|..|.+|+||||+|+..++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhhcCch
Confidence            4457888999999999988777 788899999999999999999999999999988   999999999999999999999


Q ss_pred             hHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHH
Q 039300          281 DVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTA  332 (534)
Q Consensus       281 ~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~  332 (534)
                      .+++.|++.+++-.-..-.  ++.||.+-..+     .+.....+.++|-..
T Consensus       630 ~~ckqLVe~GaavfAsTlS--DmeTa~eKCee-----~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLS--DMETAAEKCEE-----MEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHHHhccceEEeeecc--cccchhhhcch-----hhhhHHHHHHHHHHH
Confidence            9999999996555545555  88888877655     123344555555443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.21  E-value=1.2e-10  Score=104.24  Aligned_cols=123  Identities=25%  Similarity=0.357  Sum_probs=96.9

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG  242 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  242 (534)
                      -..||.-++..|+.+....|++.-..+ +.+|.+|.++|..|+.+|+.++++.|++.|+|.....+..+.||||+|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            346788888888888888888775443 4678888888888888888888888888888855566777888888888888


Q ss_pred             CHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          243 NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       243 ~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      +.++.++|++.|+.   ....+.-|+|+-.+|+.-|+.++|..+-.+
T Consensus        91 n~dvcrllldaGa~---~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR---MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCc---cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            88888888888877   555567788888888888888877655433

>PF13606 Ank_3: Ankyrin repeat

Probab=98.86  E-value=2.3e-09  Score=63.59  Aligned_cols=29  Identities=38%  Similarity=0.500  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCcccc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVN   29 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~   29 (534)
                      +|+||||+||+.|+.|+|++|+++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            59999999999999999999999999876

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=8.1e-09  Score=105.01  Aligned_cols=96  Identities=24%  Similarity=0.326  Sum_probs=74.5

Q ss_pred             HHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHHhCCcc
Q 039300          178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEM  256 (534)
Q Consensus       178 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~  256 (534)
                      +--++-+.+.+..+++|..|.|+||+++..+..+++++|+++|.+ +..+|. .|+||||-|+.+|+.+++-+|+++|..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            344555566666677888888888888888888888888888888 555554 588888888888888888888888765


Q ss_pred             cccccccCCCCCcHHHHHHhc
Q 039300          257 ENLINLIDRNGNTSLHLAAMG  277 (534)
Q Consensus       257 ~~~~~~~d~~g~t~Lh~A~~~  277 (534)
                         +..+|++|..||..-++-
T Consensus       112 ---L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  112 ---LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             ---eEEecccCCCHHHHHhhc
Confidence               778888888888877663

>PF13606 Ank_3: Ankyrin repeat

Probab=98.68  E-value=2.6e-08  Score=59.11  Aligned_cols=29  Identities=28%  Similarity=0.547  Sum_probs=24.9

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHcCCCCC
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEKDSAPS   75 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~   75 (534)
                      +|+||||+||++|+.|+|++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999988764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.65  E-value=9.5e-08  Score=91.94  Aligned_cols=86  Identities=20%  Similarity=0.257  Sum_probs=76.8

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcH
Q 039300            6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         6 Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tp   85 (534)
                      ||-.++.|+.+..-.||..|+++|.            .--+.|+||||.|++.|+..-+++|+-.|+|+. ..|..|.||
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~------------~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~d~~GmtP  203 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANF------------FHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQDSSGMTP  203 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCC------------CCcccCCchhHHHHhccchhhhhHHhhccCCCC-CCCCCCCcH
Confidence            8899999999999999999999885            244679999999999999999999999999985 789999999


Q ss_pred             HHHHHHcCcHHHHHHHHhc
Q 039300           86 LSIAIDVRLNDIACFIIDK  104 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~  104 (534)
                      +.+|-..||.++.+.|++.
T Consensus       204 ~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  204 VDYARQGGHHELAERLVEI  222 (669)
T ss_pred             HHHHHhcCchHHHHHHHHH
Confidence            9999999999998888764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.64  E-value=6.7e-08  Score=94.31  Aligned_cols=107  Identities=27%  Similarity=0.322  Sum_probs=92.7

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300          201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS  280 (534)
Q Consensus       201 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  280 (534)
                      +..|+..++.--+......|.+ ...++.+.++.||+|+..|+-++|+++++++. ..+++..|..|.|+||.|+..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p-~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP-SELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCC-HHHHHHHhhhhhHHHHHHHHhcch
Confidence            4556666666556666667777 77889999999999999999999999999987 467889999999999999999999


Q ss_pred             hHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          281 DVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       281 ~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      .+.++|.+. |+.+...|.  +|.||-+-|..
T Consensus       948 ~vc~~lvda-gasl~ktd~--kg~tp~eraqq  976 (1004)
T KOG0782|consen  948 AVCQLLVDA-GASLRKTDS--KGKTPQERAQQ  976 (1004)
T ss_pred             HHHHHHHhc-chhheeccc--CCCChHHHHHh
Confidence            999999998 789998999  99999998876

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.60  E-value=5.5e-08  Score=59.53  Aligned_cols=30  Identities=37%  Similarity=0.463  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQ   30 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~   30 (534)
                      +|.||||+||..|+.+++++|+++|++++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            599999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.59  E-value=5e-08  Score=93.41  Aligned_cols=90  Identities=17%  Similarity=0.222  Sum_probs=80.2

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      .++.+||+.|++..++.+.-.|.|.+             .+|.+.+|+||.|+..|+.+++|+|++......+..|..|+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~-------------~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~r  574 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLE-------------TKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGR  574 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhccccc-------------ccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCC
Confidence            46889999999999999998888766             48999999999999999999999999996555568899999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCC
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSS  106 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~  106 (534)
                      |||.-|...+|.+++++|-+.-.
T Consensus       575 tPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  575 TPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CcchHhHhcCcHHHHHHHHHHhc
Confidence            99999999999999999987544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.56  E-value=6.5e-08  Score=59.21  Aligned_cols=33  Identities=42%  Similarity=0.628  Sum_probs=23.8

Q ss_pred             CCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300          266 NGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       266 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~  299 (534)
                      +|+||||+|+..|+.+++++|+++ |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCCC
Confidence            477777777777777777777775 677776653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.53  E-value=6.3e-08  Score=98.70  Aligned_cols=88  Identities=25%  Similarity=0.309  Sum_probs=80.6

Q ss_pred             hhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCc
Q 039300          154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS  233 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  233 (534)
                      ...|..|..|+|+||+++..+..+++++|+++|.++.-+....|+||||.|...|++|++..|+++|.. ....|++|..
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i~Dkegls  121 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRIKDKEGLS  121 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEEecccCCC
Confidence            558889999999999999999999999999999998755556899999999999999999999999988 8999999999


Q ss_pred             HHHHHHhcC
Q 039300          234 ILHVAAKHG  242 (534)
Q Consensus       234 ~Lh~A~~~~  242 (534)
                      ||..-++-.
T Consensus       122 plq~~~r~~  130 (1267)
T KOG0783|consen  122 PLQFLSRVL  130 (1267)
T ss_pred             HHHHHhhcc
Confidence            999887643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.51  E-value=3.7e-07  Score=89.29  Aligned_cols=118  Identities=19%  Similarity=0.267  Sum_probs=98.8

Q ss_pred             HHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC-ccccccCCCCcHHHHHHhcCCHHH
Q 039300          168 HYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD-AIEIRDNSDRSILHVAAKHGNWNI  246 (534)
Q Consensus       168 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~t~Lh~A~~~~~~~~  246 (534)
                      ..|+..++.--.+..-.+|.++. .++.+..+.||+|++.|+-++|+++++++|. ..+..|..|.|+||-|+-.++..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            34455555444444555566544 6788889999999999999999999999986 456788999999999999999999


Q ss_pred             HHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          247 VSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       247 ~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      .++|.+.|+.   +...|..|.||-.-|-+.|++++..+|-..
T Consensus       950 c~~lvdagas---l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchh---heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999887   888999999999999999999999988654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.49  E-value=4.4e-07  Score=87.50  Aligned_cols=94  Identities=26%  Similarity=0.332  Sum_probs=84.1

Q ss_pred             cccCCCCcH------HHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCC
Q 039300          158 RLDWHQRNP------LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSD  231 (534)
Q Consensus       158 ~~d~~g~tp------L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g  231 (534)
                      .+|.+|.+.      ||..++.|+.+..-.|+..|++.++.....|.||||+|++.|+..-+++|+-.|+| +...|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCC
Confidence            345555443      89999999999999999999999988888999999999999999999999999999 89999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHh
Q 039300          232 RSILHVAAKHGNWNIVSFILK  252 (534)
Q Consensus       232 ~t~Lh~A~~~~~~~~~~~Ll~  252 (534)
                      +||+.+|-..|+-++.+-|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999888776664

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.44  E-value=2.2e-07  Score=89.11  Aligned_cols=92  Identities=33%  Similarity=0.394  Sum_probs=64.6

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300          195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                      .++..++.+|++.|.+..++.+.-.+.| ++.+|.+.+|+||+|+..|+.+++++|++.-..  .++.+|..|+|||.-|
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv--~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKV--DPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcC--CCChhhccCCCcchHh
Confidence            3455667777777777777777766666 677777777777777777777777777765322  2666777777777777


Q ss_pred             HhcCChhHHHHhhhC
Q 039300          275 AMGLHSDVVFTLSRH  289 (534)
Q Consensus       275 ~~~~~~~~v~~Ll~~  289 (534)
                      ...++.+++++|.+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            777777777777654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.40  E-value=7.8e-07  Score=86.99  Aligned_cols=91  Identities=25%  Similarity=0.271  Sum_probs=76.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCc
Q 039300            5 PLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQT   84 (534)
Q Consensus         5 ~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~t   84 (534)
                      |||.++.....+-....+..-+.           ..++.+|..|+||||+|+.-|+.+.++.|+.+|++.. .+|.+|.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~-----------~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~gWs   90 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVS-----------LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNEGWS   90 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhh-----------ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-cccccccc
Confidence            49999998888766665544221           1244689999999999999999999999999998885 78999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCC
Q 039300           85 PLSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        85 pL~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      |||.|+..|+.+++..++.+...
T Consensus        91 ~L~EAv~~g~~q~i~~vlr~~~~  113 (560)
T KOG0522|consen   91 PLHEAVSTGNEQIITEVLRHLKY  113 (560)
T ss_pred             HHHHHHHcCCHHHHHHHHHHhHH
Confidence            99999999999999998887654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=1.8e-06  Score=84.53  Aligned_cols=89  Identities=31%  Similarity=0.499  Sum_probs=72.3

Q ss_pred             cHHHHHHhCCCHHHHHHHHhhc-hhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 039300          165 NPLHYAAASGNVQMVQRLLEAS-KQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN  243 (534)
Q Consensus       165 tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  243 (534)
                      .|+|+++.....+-....+... ......+|..|.||||+|+.-|+.+.++.|+..+++ +..+|++|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-VSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-ccccccccccHHHHHHHcCC
Confidence            4689998877766655544332 223346788999999999999999999999999998 88899999999999999999


Q ss_pred             HHHHHHHHhCC
Q 039300          244 WNIVSFILKSP  254 (534)
Q Consensus       244 ~~~~~~Ll~~~  254 (534)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            99988888764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.23  E-value=3.3e-06  Score=83.18  Aligned_cols=92  Identities=13%  Similarity=0.013  Sum_probs=79.5

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcH
Q 039300            6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         6 Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tp   85 (534)
                      |.-|+...++..+-.||.+|....         ..-...+.+|+|+||+||+.|++.+.++|+-+|+|.. ..|..|+|+
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e---------~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~  697 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREE---------VNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTA  697 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchh---------hhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchh
Confidence            566888889999999999986432         1222467788999999999999999999999999885 789999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCC
Q 039300           86 LSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      |.+|-+.|..+++..|+++|..
T Consensus       698 l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCC
Confidence            9999999999999999999976

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.17  E-value=2.9e-06  Score=83.56  Aligned_cols=92  Identities=18%  Similarity=0.135  Sum_probs=77.3

Q ss_pred             HHHHHhcCCHHHHHHHHhCCcccccccc-cCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENLINL-IDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT  313 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~  313 (534)
                      |.-|+...+...+-+|+.+|......+. -+.+|.|+||+|++.|+..+.++|+|+ |+|+..+|.  .|+|+|-+|.. 
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda--~g~t~l~yar~-  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDA--HGRTALFYARQ-  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-Cccceeccc--CCchhhhhHhh-
Confidence            5567777888888899998765443333 467889999999999999999999998 899999999  99999999988 


Q ss_pred             hhchHHHHHHhHHHHHHHHhhhc
Q 039300          314 RADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       314 ~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                            ....+.++.|+++|...
T Consensus       704 ------a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  704 ------AGSQECIDVLLQYGCPD  720 (749)
T ss_pred             ------cccHHHHHHHHHcCCCc
Confidence                  45678899999998754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.12  E-value=9.3e-06  Score=76.08  Aligned_cols=54  Identities=28%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCC
Q 039300            6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDS   72 (534)
Q Consensus         6 Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~   72 (534)
                      |..||+.|+.+.|++|++.|.++|+             .|....+||.+|+..||.++|++|+++|+
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~-------------vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNA-------------VDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcch-------------hhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            3445555555555555555544442             44445555555555555555555555543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.09  E-value=7.9e-06  Score=84.82  Aligned_cols=130  Identities=20%  Similarity=0.217  Sum_probs=95.4

Q ss_pred             HHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcH
Q 039300            6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         6 Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tp   85 (534)
                      ...||..|+.-.|+..++.... .        +..++.+|.-|.++|+.|+.+.|.|++++|++.+...        ..+
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~-~--------~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdA   91 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAV-S--------KLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDA   91 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccc-c--------ccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chH
Confidence            4579999999999999987543 1        2346678999999999999999999999999876333        368


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCc
Q 039300           86 LSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN  165 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~t  165 (534)
                      |.+|+..|..++|+.++.+......     .+     .+.                            +.....-..+-|
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~-----~~-----~~~----------------------------d~~~~~ft~dit  133 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPY-----LE-----RSG----------------------------DANSPHFTPDIT  133 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccch-----hc-----ccc----------------------------ccCcccCCCCcc
Confidence            8999999999999999987654100     00     000                            111112233568


Q ss_pred             HHHHHHhCCCHHHHHHHHhhchhhh
Q 039300          166 PLHYAAASGNVQMVQRLLEASKQLA  190 (534)
Q Consensus       166 pL~~A~~~g~~~~v~~Ll~~~~~~~  190 (534)
                      ||.+||..++.|+++.|+++|+.++
T Consensus       134 PliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  134 PLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHhcchHHHHHHHHcCCCCC
Confidence            8888888888888888888887654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.01  E-value=5.7e-06  Score=88.34  Aligned_cols=86  Identities=27%  Similarity=0.454  Sum_probs=54.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |-|+||.|+..|...+++.|++.|+++|             ..|..|+||||.+...|+...+..|+++|+++. ..+.+
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn-------------~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~-a~~~~  721 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVN-------------ALDSKGRTPLHHATASGHTSIACLLLKRGADPN-AFDPD  721 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcch-------------hhhccCCCcchhhhhhcccchhhhhcccccccc-ccCcc
Confidence            4566666666666666666666666655             366666666666666666666666666666653 55666


Q ss_pred             CCcHHHHHHHcCcHHHHHHH
Q 039300           82 YQTPLSIAIDVRLNDIACFI  101 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~L  101 (534)
                      |.+||.+|....+.+++-++
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             CcchhhHHhhhccccHHHHH
Confidence            66666666555544444333

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.99  E-value=9.2e-05  Score=77.16  Aligned_cols=128  Identities=22%  Similarity=0.185  Sum_probs=99.1

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchh---hhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQ---LAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA  239 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  239 (534)
                      +.--...|+..|+...|+..++....   ..+..|.-|.++|+.|..+.+.+++++|+++....        ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            33445679999999999998876553   23467889999999999999999999999876551        47899999


Q ss_pred             hcCCHHHHHHHHhCCcccc-------cccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300          240 KHGNWNIVSFILKSPEMEN-------LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       240 ~~~~~~~~~~Ll~~~~~~~-------~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~  299 (534)
                      ..|..++++.++.+.....       .-...-..+-|||.+||..++.+++++|+.+ |+++...-.
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i~~PH~  162 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCIPIPHD  162 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCCCCCcc
Confidence            9999999999998743210       0112224578999999999999999999998 566544433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.92  E-value=4.6e-05  Score=64.84  Aligned_cols=68  Identities=13%  Similarity=0.108  Sum_probs=61.9

Q ss_pred             hhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300           40 LFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        40 ~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      .++.+|..|+|||+.|+..|+.+.|.+|+.+|.......|..|.+.+.+|-..|+.+.++.|.+...+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            45679999999999999999999999999999655568899999999999999999999999988655

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.88  E-value=5.2e-05  Score=71.23  Aligned_cols=74  Identities=14%  Similarity=0.076  Sum_probs=61.2

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHH
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFV  125 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~  125 (534)
                      .--|..||+.|+.+.|++|++.|.+++ ..|....+||++|+..||.++|++|+++|+-  ...+..+|..++.-|.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAi--C~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAI--CSRDTFDGDRCHYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCc--ccccccCcchhhhhhh
Confidence            345899999999999999999998875 7899999999999999999999999999996  3334436766644433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.80  E-value=2.2e-05  Score=83.95  Aligned_cols=79  Identities=25%  Similarity=0.343  Sum_probs=60.4

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHH
Q 039300          229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLE  308 (534)
Q Consensus       229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~  308 (534)
                      ..|.++||.|+.++...++++|++++++   +|..|..|+||||.+...|+...+..|+++ |++.++.+.  +|++|++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~--~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDP--DGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhccc-cccccccCc--cCcchhh
Confidence            3567778888888877788888877776   777788888888888877877777777775 677777777  7788887


Q ss_pred             HhHhh
Q 039300          309 IDEMT  313 (534)
Q Consensus       309 ~a~~~  313 (534)
                      ++.+.
T Consensus       728 ~a~~~  732 (785)
T KOG0521|consen  728 IAMEA  732 (785)
T ss_pred             HHhhh
Confidence            77654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.76  E-value=2.3e-05  Score=83.25  Aligned_cols=132  Identities=20%  Similarity=0.186  Sum_probs=91.2

Q ss_pred             hhcccCCCCcHHHHHHhCCCHHHHHHHHhh-chhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcH
Q 039300          156 INRLDWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI  234 (534)
Q Consensus       156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  234 (534)
                      .......|.+.+|+++..++.-.++.+++. +.. ....|.+|...+|+ |..++.+..-+++......++.+|.+|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            344455677888888888888888888875 332 23456666667777 445556666666655555578888888888


Q ss_pred             HHHHHhcCCHHHHHHHHhCCccccc---ccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENL---INLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~---~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      ||+|+.+|+..++..|++.++.+..   ++..+..|.|+-.+|..+|+..+..+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            8888888888888888877665432   333445688888888888887777666543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.62  E-value=0.00011  Score=62.53  Aligned_cols=69  Identities=22%  Similarity=0.186  Sum_probs=62.0

Q ss_pred             hhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 039300          154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD  222 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  222 (534)
                      .++|.+|..|+|+++.|+..|+.+.+.+|+.+|....-..|..|.+++.+|-+.|..++++.|.+...+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            468999999999999999999999999999999555557899999999999999999999999987554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.57  E-value=7.7e-05  Score=79.42  Aligned_cols=117  Identities=13%  Similarity=0.096  Sum_probs=92.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhc-CccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            2 DETPLHIAARIGDHAIVSEIMKY-VPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      |.|.||.++..++.-.++.+++- |....             ..|.+|.-.+|+ |..++.+.+-+++.....-.+.+|.
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~-------------eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~  639 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDL-------------ELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR  639 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCch-------------hhcccCCChhhH-hhhcCCceeEEEEeecccccccccC
Confidence            78999999999999999999986 43322             356777778888 6677888887777765555568999


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCc----ccCCCCCCchHHHHHHHhcCcch
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESL----NATRLPDELTLLHFFVMRQNYDL  132 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~  132 (534)
                      .|+||||+|+..|+..++..|++-++...    ...+.+.|.|+-..|..+|+..+
T Consensus       640 ~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  640 NGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             CCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccch
Confidence            99999999999999999999998887621    12334478899999998888776

>smart00248 ANK ankyrin repeats

Probab=97.04  E-value=0.00083  Score=38.77  Aligned_cols=29  Identities=31%  Similarity=0.473  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCcccc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVN   29 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~   29 (534)
                      .|.||||+|+..|+.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999987543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.70  E-value=0.0027  Score=36.43  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=21.1

Q ss_pred             CCcHhHHHHHhCcHHHHHHHHHcCCCC
Q 039300           48 GNTPLHNVVTKKHKRVIRILVEKDSAP   74 (534)
Q Consensus        48 g~TpLh~A~~~g~~e~v~~Ll~~g~~~   74 (534)
                      |.||+|+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            678888888888888888888877644

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.24  E-value=0.01  Score=58.40  Aligned_cols=68  Identities=13%  Similarity=-0.011  Sum_probs=53.1

Q ss_pred             CCHHHHHHHHhCCccc---ccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          242 GNWNIVSFILKSPEME---NLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~---~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      .-++.+++|.+++...   ..+...|..--|+||+|+..|..+++.+||+. |+|+..+|.  .|+||.+++..
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~--~Grtpy~ls~n  472 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDG--AGRTPYSLSAN  472 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhccc--CCCCccccccc
Confidence            3466777887775431   12333455567999999999999999999999 599999999  99999999875

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.01  E-value=0.011  Score=58.17  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=56.7

Q ss_pred             HHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCc
Q 039300           15 HAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRL   94 (534)
Q Consensus        15 ~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~   94 (534)
                      .+.+++|.+++.+.|..-.       -...+.--.|+||+|+.+|.-++|.+||+.|.|+ ...|..|.||..++.   +
T Consensus       404 p~~ie~lken~lsgnf~~~-------pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~---n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT-------PEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA---N  472 (591)
T ss_pred             hhHHHHHHhcCCccccccc-------ccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc---c
Confidence            5677888888777664110       0123444679999999999999999999999777 478999999999886   4


Q ss_pred             HHHHHHHH
Q 039300           95 NDIACFII  102 (534)
Q Consensus        95 ~~iv~~Ll  102 (534)
                      .|+-..++
T Consensus       473 kdVk~~F~  480 (591)
T KOG2505|consen  473 KDVKSIFI  480 (591)
T ss_pred             HHHHHHHH
Confidence            44444443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.51  E-value=0.28  Score=42.36  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHh
Q 039300          201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK  252 (534)
Q Consensus       201 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~  252 (534)
                      |..|+..|-...+-..++.|.+ ++.      ++|..|+++++.+++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~-~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGN-VDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCc-ccH------HHHHHHHHhhHHHHHHHhhc
Confidence            5566777777777777777665 221      67777777777777766653

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.20  E-value=0.33  Score=41.92  Aligned_cols=143  Identities=15%  Similarity=0.108  Sum_probs=96.7

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ  128 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~  128 (534)
                      .-.|.-|+.++...+++..-+...+.    -...++..-.||+..+.|+|+|+-+.-.-       .+-.+.+..|....
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-------~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-------YNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-------CCchhhhhhhhhcc
Confidence            34567789999999988887664221    13456888899999999999999554332       15567888899888


Q ss_pred             CcchhhhhhhHHHHHHHHHHhCCChhhhhcccC--CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300          129 NYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW--HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE  206 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~--~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  206 (534)
                      +.++-.     --...+.......    ...|.  --..-|..|+..|-.+.+...++.|.+..       .+.|..|++
T Consensus       116 DlsLys-----lGY~l~~~~~~~~----~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av~  179 (192)
T PF03158_consen  116 DLSLYS-----LGYKLLFNRMMSE----HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVK  179 (192)
T ss_pred             chhHHH-----HHHHHHHhhcccc----cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHH
Confidence            877611     0011122221100    00000  00123678999999999999999998653       289999999


Q ss_pred             cCcHHHHHHHHH
Q 039300          207 NGELKVLKLLIN  218 (534)
Q Consensus       207 ~g~~~~v~~Ll~  218 (534)
                      .++-.++.+++.
T Consensus       180 ynhRkIL~yfi~  191 (192)
T PF03158_consen  180 YNHRKILDYFIR  191 (192)
T ss_pred             hhHHHHHHHhhc
Confidence            999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.86  E-value=0.36  Score=35.76  Aligned_cols=49  Identities=24%  Similarity=0.375  Sum_probs=41.7

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcC
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKS  105 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  105 (534)
                      ...+..|+..|+.|+++.+++.+ .+.       ...+..|+...+.+++++|+++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            45689999999999999999776 221       35799999999999999999975

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.27  E-value=2  Score=38.39  Aligned_cols=121  Identities=15%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             HhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCc
Q 039300           51 PLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNY  130 (534)
Q Consensus        51 pLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~  130 (534)
                      .|-.|+..-+.+-+.-++...        .+-.+++.+|+.++..+++.+|+++-.-  ...+         +|-.....
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f~f--t~~d---------v~~~~~~~  216 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKFNF--TKQD---------VASMEKEL  216 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhcce--ecch---------hhhcCcch
Confidence            467788888888777666432        1234789999999999999999986542  1111         00000000


Q ss_pred             chhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhh---cccCCCCCcHHHHHHHc
Q 039300          131 DLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLA---YKRDCNGATPLHLAAEN  207 (534)
Q Consensus       131 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~g~tpL~~A~~~  207 (534)
                      .         .+++++..                       ...+..++++.+++|--..   ..+-..|.|-|.-|.+.
T Consensus       217 y---------dieY~LS~-----------------------h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky  264 (284)
T PF06128_consen  217 Y---------DIEYLLSE-----------------------HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKY  264 (284)
T ss_pred             h---------hHHHHHhh-----------------------cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhc
Confidence            0         02222221                       1124556666676664222   23445778888888888


Q ss_pred             CcHHHHHHHHHhCCC
Q 039300          208 GELKVLKLLINKYPD  222 (534)
Q Consensus       208 g~~~~v~~Ll~~~~~  222 (534)
                      ++.+++..|+++|+.
T Consensus       265 ~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  265 KNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHHcCcc
Confidence            888888888887764

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.78  E-value=0.69  Score=34.20  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcC
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKD   71 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g   71 (534)
                      +..|..|+..|+.|+++.+++.+..                    ....|..|+...+-+++++|+++-
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--------------------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--------------------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--------------------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            3568899999999999999976421                    146799999999999999999974

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.16  E-value=1.5  Score=39.18  Aligned_cols=48  Identities=15%  Similarity=0.029  Sum_probs=27.3

Q ss_pred             hhHHHHhhhCcccchhhc---cccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300          280 SDVVFTLSRHKSVNIRAK---NRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       280 ~~~v~~Ll~~~~~~~~~~---n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                      ..+.+..++.+-+++|.+   -+  .|.|-||-|..       ..+.+++..|+++||-.
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~N--SGdtMLDNA~K-------y~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVN--SGDTMLDNAMK-------YKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHHHHHHHhccccccchhhhccC--CcchHHHhHHh-------cCcHHHHHHHHHcCccc
Confidence            355556666555555543   22  46666666665       45566666666666643

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=88.50  E-value=18  Score=35.27  Aligned_cols=233  Identities=9%  Similarity=0.018  Sum_probs=133.5

Q ss_pred             cCCCCCcHhHHHHHhCcHHHHHHHHHc-CCC-CCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCC-CcccCCCCCCchH
Q 039300           44 RDIEGNTPLHNVVTKKHKRVIRILVEK-DSA-PSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE-SLNATRLPDELTL  120 (534)
Q Consensus        44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~-g~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~-~~~~~~~~~g~t~  120 (534)
                      .|..|.-.|..+.+.++.+....+.+. .++ ..-..|..|.-.+......+..+-...+++.-.. .......+.|...
T Consensus        17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~v   96 (322)
T cd07920          17 KDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRV   96 (322)
T ss_pred             CCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHH
Confidence            566777788888888877777776665 111 1113466677777777777766655544443211 1111122267777


Q ss_pred             HHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhch--hhhcccCCCCC
Q 039300          121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK--QLAYKRDCNGA  198 (534)
Q Consensus       121 L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~  198 (534)
                      +..+......+.         ...+++.+... ...-..|..|...+..+...+..+..+.+++.-.  -.....+..|.
T Consensus        97 lqkll~~~~~~~---------~~~i~~~l~~~-~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~  166 (322)
T cd07920          97 IQKLLESISEEQ---------ISLLVKELRGH-VVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGC  166 (322)
T ss_pred             HHHHHHhcCHHH---------HHHHHHHHHHC-HHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            777776665333         33333332211 1223456778888887777766665555544322  11223566777


Q ss_pred             cHHHHHHHcCcHHH----HHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300          199 TPLHLAAENGELKV----LKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       199 tpL~~A~~~g~~~~----v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                      ..+....+....+.    ++.+...-.  .-..|..|+..+..+...+..+..+.+++.-......-..++.|...+..+
T Consensus       167 ~vvq~~l~~~~~~~~~~l~~~l~~~~~--~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~  244 (322)
T cd07920         167 RVIQRCLEHCSEEQREPLLEEILEHAL--ELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKC  244 (322)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHH--HHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            77777776655443    333333322  224578899999999998877666666554221111235678898888888


Q ss_pred             HhcCCh----hHHHHhhh
Q 039300          275 AMGLHS----DVVFTLSR  288 (534)
Q Consensus       275 ~~~~~~----~~v~~Ll~  288 (534)
                      ...+..    .+++.++.
T Consensus       245 l~~~~~~~~~~ii~~l~~  262 (322)
T cd07920         245 LKHASKEERELIIDEILA  262 (322)
T ss_pred             HHHCCHHHHHHHHHHHhc
Confidence            877764    34444443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=85.20  E-value=29  Score=33.75  Aligned_cols=226  Identities=12%  Similarity=0.058  Sum_probs=126.7

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHc--CCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCC--CcccCCCCCCc
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE--SLNATRLPDEL  118 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~  118 (534)
                      ..|..|+-.+......+..+-...+++.  |.-..-..+..|.-.+..+...+..+....+++.-..  ..-..+. .|.
T Consensus        52 ~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~-~gn  130 (322)
T cd07920          52 MVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQ-NGN  130 (322)
T ss_pred             hcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcc-ccc
Confidence            4678899888888888877766555544  2111123566777777777777765544444443211  1112233 777


Q ss_pred             hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHH----HHHHHHhhchhhhcccC
Q 039300          119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ----MVQRLLEASKQLAYKRD  194 (534)
Q Consensus       119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~~~  194 (534)
                      ..+..+....+.+.         .+.+++.+... ...-..+..|...+.........+    +++.+...-.  ....|
T Consensus       131 ~Vvq~~l~~~~~~~---------~~~i~~~l~~~-~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~--~L~~d  198 (322)
T cd07920         131 HVIQKCIEKFPPED---------LQFIIDAFKGN-CVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHAL--ELVQD  198 (322)
T ss_pred             HHHHHHHHhCCHHH---------HHHHHHHHHHH-HHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH--HHhcC
Confidence            77777777665554         33333332211 111234556777777666665544    3444443322  23467


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCc--cccccCCCCcHHHHHHhcCCHH----HHHHHHhCCc--ccccccccCCC
Q 039300          195 CNGATPLHLAAENGELKVLKLLINKYPDA--IEIRDNSDRSILHVAAKHGNWN----IVSFILKSPE--MENLINLIDRN  266 (534)
Q Consensus       195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~----~~~~Ll~~~~--~~~~~~~~d~~  266 (534)
                      ..|...+..+.+.+..+..+.+++.-...  .-..++.|...+..+...+..+    +++-++....  ..-.--..|..
T Consensus       199 ~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~  278 (322)
T cd07920         199 QFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQY  278 (322)
T ss_pred             CchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCc
Confidence            88998898888888765444444332110  1346788988888888887644    3344433220  01112235677


Q ss_pred             CCcHHHHHHhcCChh
Q 039300          267 GNTSLHLAAMGLHSD  281 (534)
Q Consensus       267 g~t~Lh~A~~~~~~~  281 (534)
                      |+-.+..+...+...
T Consensus       279 Gn~Viq~~l~~~~~~  293 (322)
T cd07920         279 GNYVIQTALDVAKEE  293 (322)
T ss_pred             ccHHHHHHHHhCCHH
Confidence            777766666555543

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	534
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-18
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-18
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-07
1uoh_A	226	Human Gankyrin Length = 226		8e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-08
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		8e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		8e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		7e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		7e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 5/120 (4%)
Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           R PLH AA +G++++V+ LLEA   +  K D NG TPLHLAA NG L+V+KLL+    D 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           +  +D + R+ LH+AA++G+  +V  +L   E    +N  D+NG T LHLAA   H +VV
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVV 117

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 135/297 (45%), Gaps = 35/297 (11%)
Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D+TPLH AARIG   +V  +++     N A +A             G+TPLH    + H 
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPNLATTA-------------GHTPLHIAAREGHV 126
Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
             +  L+EK+++ +    K + TPL +A       +A  ++++ +    A +  + LT L
Sbjct: 127 ETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPL 183
Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
           H  V   N D+             VK+L       +   W+   PLH AA    V++ + 
Sbjct: 184 HVAVHHNNLDI-------------VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
           LL+     A      G TPLHLAA+ G  +++ LL++K  +   + + S  + LH+ A+ 
Sbjct: 231 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQE 288
Query: 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA-MGLHSDVVFTLSRHKSVNIRAK 297
           G+  +   ++K   M   ++   R G T LH+A+  G    V F L     VN + K
Sbjct: 289 GHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLH 202
           + K L  NK  +N      + PLH AA  G+  MV+ LLE  A+  LA      G TPLH
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLH 118
Query: 203 LAAENGELK-VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
           +AA  G ++ VL LL  +   A   +     + LHVAAK+G   +   +L   E +   N
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKG--FTPLHVAAKYGKVRVAELLL---ERDAHPN 173
Query: 262 LIDRNGNTSLHLAAMGLHSDVV 283
              +NG T LH+A    + D+V
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIV 195

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
           VK L  N   +N  D   R PLHYAA  G+ ++V+ L+     +  K D +G TPLH AA
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
           + G  +++KLLI+K  D +  +D+  R+ LH AAK G+  IV  ++        +N  D 
Sbjct: 79  KEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
           +G T L LA    + ++V  L + 
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           R PLH AA +G++++V+ LLEA   +  K D NG TPLHLAA NG L+V+KLL+    D 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
           +  +D + R+ LH+AA++G+  +V  +L++
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
           NG TPLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVV 283
               +N  D+NG T LHLAA   H +VV
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVV 84

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA  G++++V+ LL+A   +  K D +G TPLH
Sbjct: 15  DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLH 73
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK+      +N 
Sbjct: 74  LAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNA 129
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
            D+ G T   LA    H D+   L +
Sbjct: 130 QDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
           VK L  N   +N  D   R PLH+AA +G+ ++V+ L+     +  K D +G TPLH AA
Sbjct: 20  VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
           ENG  +V+KLLI+K  D +  +D+  R+ LH AA++G+  +V  ++        +N  D 
Sbjct: 79  ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
           +G T L LA    + +VV  L + 
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
           VK L  N    N  D   R PLHYAA +G+ ++V+ LL         +D +G TPLH AA
Sbjct: 20  VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
           ENG  +++KLL++K  D    +D+  R+ LH AA++G+  IV  +L         N  D 
Sbjct: 79  ENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
           +G T L LA    + ++V  L + 
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQ 158

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA  G++++V+ LL+A   +  K D +G TPLH
Sbjct: 15  DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLH 73
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK+      +N 
Sbjct: 74  LAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNA 129
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
            D+ G T   LA    + D+   L +
Sbjct: 130 QDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 15/151 (9%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN-----G 197
           D  V+IL  N   +N  DW    PLH AA +G++++V+ LL+      Y  D N     G
Sbjct: 27  DDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------YGADVNAWDNYG 80
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
           ATPLHLAA+NG L+++++L+    D +  +D    + LH+AA  G+  IV  +LK     
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD- 138
Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
             +N  D+ G T+  ++    + D+   L +
Sbjct: 139 --VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D  G TPLHLAA+ G L+++++L+ KY   +   DN
Sbjct: 21  AARAGQDDEV-RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDN 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA +G+  IV  +LK       +N  D  G T LHLAA   H ++V  L ++
Sbjct: 79  YGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
           VK L  N   +N  D   + PLH AA +G+ ++V+ LL         +D +G TPLHLAA
Sbjct: 20  VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
           ENG  +V+KLL+++  D    +D+  ++ LH+AA++G+  +V  +L         N  D 
Sbjct: 79  ENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
           +G T L LA    + +VV  L + 
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA  G++++V+ LL+A   +  K D +G TPLH
Sbjct: 27  DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+    D +  +D    + LH+AA+ G+  IV  +LK+      +N 
Sbjct: 86  LAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
            D+ G T+  ++
Sbjct: 142 QDKFGKTAFDIS 153

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+      +D +G TPLHLAA  G L+++++L+    D +  +D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDK 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA+ G+  IV  +LK+      +N  D++G T LHLAA   H ++V  L + 
Sbjct: 79  DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK- 134
Query: 290 KSVNIRAKNRSARNNTTLEID 310
              ++ A+++  +    + ID
Sbjct: 135 AGADVNAQDKFGKTAFDISID 155

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA++G++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+    D +   DN   + LH+AAK+G+  IV  +LK       +N 
Sbjct: 86  LAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
            D+ G T+  ++
Sbjct: 142 QDKFGKTAFDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D +G TPLHLAA NG L+++++L+    D +   D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDL 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           +  + LH+AA  G+  IV  +LK       +N  D +G+T LHLAA   H ++V  L +H
Sbjct: 79  TGITPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEID 310
            + ++ A+++  +    + ID
Sbjct: 136 GA-DVNAQDKFGKTAFDISID 155

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA  G+ ++V+ LL+    +   RD +G TPLH
Sbjct: 27  DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA+NG L+++++L+ KY   +  +D    + LH+AA  G+  IV  +LK       +N 
Sbjct: 86  LAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
            D+ G T+  ++    + D+   L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D  G+TPLHLAA  G  +++++L+    D +  RD 
Sbjct: 21  AARAGQDDEV-RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDT 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA +G+  IV  +LK       +N  D  G T LHLAA   H ++V  L +H
Sbjct: 79  DGWTPLHLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N    N  D + R PLH AAA G++++V+ LL     +    D NG TPLH
Sbjct: 15  DDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLH 73
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+ KY   +  +D +  + L++AA  G+  IV  +LK       +N 
Sbjct: 74  LAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD---VNA 129
Query: 263 IDRNGNTSLHLA 274
            D+ G T+  ++
Sbjct: 130 QDKFGKTAFDIS 141

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
           VK L     L++  D      LH AA  G+ ++VQ LL   +     +D  G TP+  A 
Sbjct: 60  VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
           E   + ++KLL++K  D I IRDN +   LH AA  G  +I   +L +    + +N+   
Sbjct: 120 EYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI--- 175
Query: 266 NGNTSLHLAAMGLHSD-VVFTLSRHKSVNIRAK 297
           +G++ LH+AA     D VV  LSR   V ++ K
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AAA+G    V R+L A+       D NG TPLHLAA NG+L+++++L+    D +   D+
Sbjct: 13  AAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDS 70
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           +  + LH+AA  G+  IV  +LK       +N  DR G T LHLAA+    ++V  L +H
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D+    PLH AA  G++++V+ LL+    +  K D  G TPLH
Sbjct: 27  DDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+    D +   D+   + LH+AAK G+  IV  +LK+      +N 
Sbjct: 86  LAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
            D+ G T+  ++    + D+   L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+      RD  G TPLHLAA  G L+++++L+    D +  +D+
Sbjct: 21  AARAGQDDEV-RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDS 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA+ G+  IV  +LK+      +N  D +G T LHLAA   H ++V  L ++
Sbjct: 79  LGVTPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D +   PLH AA  G++++V+ LL+    +    D +G+TPLH
Sbjct: 27  DDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA+ G L+++++L+ KY   +   D    + LH+AA  G+  IV  +LK       +N 
Sbjct: 86  LAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
            D+ G T+  ++
Sbjct: 142 QDKFGKTAFDIS 153

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D  G TPLHLAA  G L+++++L+    D +   D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDF 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           S  + LH+AAK G+  IV  +LK       +N  D  G+T LHLAA   H ++V  L ++
Sbjct: 79  SGSTPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEID 310
            + ++ A+++  +    + ID
Sbjct: 136 GA-DVNAQDKFGKTAFDISID 155

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N +D     PLH AA SG++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+ KY   +   D +  + LH+AA  G+  IV  +LK       +N 
Sbjct: 86  LAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
            D+ G T+  ++
Sbjct: 142 QDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D  G TPLHLAA +G L+++++L+    D ++  D 
Sbjct: 21  AARAGQDDEV-RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADV 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA  G+  IV  +LK       +N  D  G+T LHLAA   H ++V  L ++
Sbjct: 79  YGFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEID 310
            + ++ A+++  +    + ID
Sbjct: 136 GA-DVNAQDKFGKTAFDISID 155

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  DW    PLH    +G++++++ LL+ +  +    D +G TPLH
Sbjct: 27  DDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+ KY   +   D    + LH+AA+ G+  IV  +LK       +N 
Sbjct: 86  LAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
            D+ G T+  ++    + D+   L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D  G TPLHL   NG L+++++L+ KY   +   D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDK 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           S  + LH+AA  G+  IV  +LK       +N +D  G T LHLAA   H ++V  L ++
Sbjct: 79  SGWTPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 7/147 (4%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQL-AYKRDCNGATPL 201
           D  V+IL  N   +N  D     PLH AA  G++++V+ LL+    + AY  D  G+TPL
Sbjct: 27  DDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLGSTPL 84
Query: 202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
           HLAA  G L+++++L+    D +  +D++  + LH+AA  G+  IV  +LK       +N
Sbjct: 85  HLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD---VN 140
Query: 262 LIDRNGNTSLHLAAMGLHSDVVFTLSR 288
             D+ G T+  ++    + D+   L +
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
           R+L A+       D  G TPLHLAA  G L+++++L+    D +   D    + LH+AA 
Sbjct: 31  RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAH 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS 300
            G+  IV  +LK+      +N  D NG T LHLAA   H ++V  L ++ + ++ A+++ 
Sbjct: 90  FGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKF 145
Query: 301 ARNNTTLEIDEMTRADVTEVQKHL 324
            +    + I+     D+ E+ + L
Sbjct: 146 GKTAFDISINNGNE-DLAEILQKL 168

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA SG++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA  G L+++++L+    D +   D+   + LH+AAK G   IV  +LK       +N 
Sbjct: 86  LAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
            D+ G T+  ++    + D+   L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D  G TPLHLAA +G L+++++L+    D ++  D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDV 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA  G+  IV  +LK+      +N +D +G T LHLAA   + ++V  L +H
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D +G TPLHLAA  G L+++++L+    D   I D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA  G+  IV  +LK       +N +D  G+T LHLAA+  H ++V  L +H
Sbjct: 79  XGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
           R+L A+       D +G TPLHLAA NG L+++++L+    D +   D++  + L +AA 
Sbjct: 31  RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAAL 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS 300
            G+  IV  +LK+      +N  D  G+T LHLAAM  H ++V  L ++ + ++ A+++ 
Sbjct: 90  FGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKF 145
Query: 301 ARNNTTLEIDEMTRADVTEVQKHL 324
            +    + ID     D+ E+ + L
Sbjct: 146 GKTAFDISIDNGNE-DLAEILQKL 168

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D +G TPLHLAA  G L+++++L+    D   I D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA  G+  IV  +LK       +N +D  G+T LHLAA+  H ++V  L +H
Sbjct: 79  MGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDN-GNEDLAEILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA  G++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           LAA+ G L+V+++L+    D +   D++  + LH+AA  G+  IV  +LK       +N 
Sbjct: 86  LAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
            D+ G T+  ++    + D+   L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 15/159 (9%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D  G TPLHLAA  G L+++++L+    D      N
Sbjct: 21  AARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-----N 74
Query: 230 SDRSI----LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT 285
           +D S+    LH+AA  G+  +V  +LK+      +N  D NG T LHLAA   H ++V  
Sbjct: 75  ADDSLGVTPLHLAADRGHLEVVEVLLKNGAD---VNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 286 LSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
           L +H + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 132 LLKHGA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D +G TPLHLAA  G L+++++L+    D +   D 
Sbjct: 21  AARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADK 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
              + LH+AA +G+  IV  +LK+      +N  D  G T LHLAA   H ++V  L ++
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
            + ++ A+++  +    + ID     D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
           PLH AA +G+ + V++LL     +   R  +G TPLHLAA+NG  +++KLL+ K  D + 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VN 69
Query: 226 IRDNSDRSILHVAAKHGNWNIVSFI 250
            R     +  H+A K+G+  IV  +
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
           +G TPLH AA+NG  + +K L++K  D +  R     + LH+AAK+G+  IV  +L    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVVFTL-SRHKSVNIRA 296
               +N   ++GNT  HLA    H ++V  L ++   VN R+
Sbjct: 67  D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
           +N  D    +PLH AA++G  ++V+ LL    Q+      NG TPLH AA     E+ V+
Sbjct: 66  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVM 124
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
            L     PDA   +D+ + + +H AA  GN  ++  +L     +   N+ D  GNT LHL
Sbjct: 125 LLEGGANPDA---KDHYEATAMHRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHL 178
Query: 274 A 274
           A
Sbjct: 179 A 179

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
           +N  D    +PLH AA++G  ++V+ LL    Q+      NG TPLH AA     E+ V+
Sbjct: 67  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVM 125
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
            L     PDA   +D+ + + +H AA  GN  ++  +L     +   N+ D  GNT LHL
Sbjct: 126 LLEGGANPDA---KDHYEATAMHRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHL 179
Query: 274 A 274
           A
Sbjct: 180 A 180

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
           D + NTPL   V  + +R++  L +  + P+ Y NK+ ++ L  A   R  D    +   
Sbjct: 163 DCDENTPLXLAVLARRRRLVAYLXKAGADPTIY-NKSERSALHQAAANR--DFGXXVY-- 217
Query: 105 SSESLNATRLPDEL--------TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLI 156
               LN+T+L  ++        T L      +  D   S + L      V   G  +   
Sbjct: 218 ---XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274
Query: 157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
            +  +  R  LHYAA   N  +V+ L+        K+D +G TP+ LAA+ G ++V+  L
Sbjct: 275 EK--YKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVS-FILKSPEME 257
           I +   ++E  D +D +   +A  + + NIV  F    PE E
Sbjct: 333 IQQGA-SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 153 KDLINRLD-WHQRNPLHYAAASGNVQMVQRLL--EASKQLAYK-----RDCNGATPLHLA 204
           ++ +N +D  H R  LH+ A++ + +  + L+  EA + +A        DC+  TPL LA
Sbjct: 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLA 173
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLID 264
                 +++  L     D   I + S+RS LH AA + ++    + L S +++  I  +D
Sbjct: 174 VLARRRRLVAYLXKAGADPT-IYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELD 232
Query: 265 RNGNTSLHLAAMGLHSDVVFT 285
           RNG T+L + A     D V +
Sbjct: 233 RNGXTALXIVAHNEGRDQVAS 253

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
           +N  D    +PLH AA++G  ++V+ LL     +      NG TPLH AA     E+ V+
Sbjct: 66  VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVM 124
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
            L     PDA   +D+ D + +H AA  GN  +V  +L     +   N+ D  GNT LHL
Sbjct: 125 LLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHL 178
Query: 274 A 274
           A
Sbjct: 179 A 179

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
           +N  D    +PLH AA++G  ++V+ LL     +      NG TPLH AA     E+ V+
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVM 124
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
            L     PDA   +D+ D + +H AA  GN  +V  +L     +   N+ D  GNT LHL
Sbjct: 125 LLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHL 178
Query: 274 A 274
           A
Sbjct: 179 A 179

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N +D     PLH AA  G++++V+ LL+    +   RD  G TPLH
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           LAA  G L+++++L+ +Y   +  +D   ++   ++  +GN ++   + K
Sbjct: 86  LAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
           R+L A+       D  G TPLHLAA+ G L+++++L+    D +  RD   R+ LH+AA 
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAAT 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
            G+  IV  +L   E    +N  D+ G T+  ++    + D+   L +
Sbjct: 90  VGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
           ++  Q  PLH+AA    V +V+ LL+    + + +D  G  PLH A   G  +V +LL+ 
Sbjct: 40  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 97
Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLIDRNGNTSLHLAA 275
           K+   + + D    + LH AA  G + I   +L+    P  +N      R+GNT L L  
Sbjct: 98  KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 151
Query: 276 MG 277
            G
Sbjct: 152 DG 153

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
           ++  Q  PLH+AA    V +V+ LL+    + + +D  G  PLH A   G  +V +LL+ 
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 95
Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLIDRNGNTSLHLAA 275
           K+   + + D    + LH AA  G + I   +L+    P  +N      R+GNT L L  
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 149
Query: 276 MG 277
            G
Sbjct: 150 DG 151

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
           ++  Q  PLH+AA    V +V+ LL+    + + +D  G  PLH A   G  +V +LL+ 
Sbjct: 42  IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 99
Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLIDRNGNTSLHLAA 275
           K+   + + D    + LH AA  G + I   +L+    P  +N      R+GNT L L  
Sbjct: 100 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 153
Query: 276 MG 277
            G
Sbjct: 154 DG 155

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 1   MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
           M   PLH A    +   V E++   P            +L   +D +G  PLH  V+ + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 61  KRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE- 117
             +   L+ K  +     Y + +  TP  IA  V   ++   + D+  +  +  ++ ++ 
Sbjct: 49  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG 107
Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
           +T LH  V ++ +++S   QFL      V+I    KD  N++      PLH AA+ G+++
Sbjct: 108 VTCLHLAVGKKWFEVS---QFLIENGASVRI----KDKFNQI------PLHRAASVGSLK 154
Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
           +++ L    K     +D  G TPL  A   G      LL+ KY    ++ DN       V
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 238 A 238
           A
Sbjct: 215 A 215

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 1   MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
           M   PLH A    +   V E++   P            +L   +D +G  PLH  V+ + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 61  KRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE- 117
             +   L+ K  +     Y + +  TP  IA  V   ++   + D+  +  +  ++ ++ 
Sbjct: 49  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG 107
Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
           +T LH  V ++ +++S   QFL      V+I    KD  N++      PLH AA+ G+++
Sbjct: 108 VTCLHLAVGKKWFEVS---QFLIENGASVRI----KDKFNQI------PLHRAASVGSLK 154
Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
           +++ L    K     +D  G TPL  A   G      LL+ KY    ++ DN       V
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 238 A 238
           A
Sbjct: 215 A 215

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 1   MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
           M   PLH A    +   V E++   P            +L   +D +G  PLH  V+ + 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 61  KRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE- 117
             +   L+ K  +     Y + +  TP  IA  V   ++   + D+  +  +  ++ ++ 
Sbjct: 49  HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG 107
Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
           +T LH  V ++ +++S   QFL      V+I    KD  N++      PLH AA+ G+++
Sbjct: 108 VTCLHLAVGKKWFEVS---QFLIENGASVRI----KDKFNQI------PLHRAASVGSLK 154
Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
           +++ L    K     +D  G TPL  A   G      LL+ KY    ++ DN       V
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 238 A 238
           A
Sbjct: 215 A 215

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N LD     PLH AA  G++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           LAA  G L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 86  LAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V R+L A+       D +G TPLHLAA+ G L+++++L+ KY   +   DN
Sbjct: 21  AARAGQDDEV-RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDN 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
              + LH+AA  G+  IV  +LK       +N  D+ G T+  ++    + D+   L +
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N +D     PLH AA  G++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           LAA  G L+++++L+ +Y   +  +D   ++   ++  +GN ++   + K
Sbjct: 86  LAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
           R+L A+       D  G TPLHLAA+ G L+++++L+    D +   D+  R+ LH+AA 
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAAT 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
            G+  IV  +L   E    +N  D+ G T+  ++    + D+   L +
Sbjct: 90  VGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N +D     PLH AA  G++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           LAA  G L+++++L+ +Y   +  +D   ++   ++  +GN ++   + K
Sbjct: 86  LAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
           R+L A+       D  G TPLHLAA+ G L+++++L+    D +   D   R+ LH+AA 
Sbjct: 31  RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAAT 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
            G+  IV  +L   E    +N  D+ G T+  ++    + D+   L +
Sbjct: 90  VGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI--NKYPD 222
           +PLH AA  G   ++  LL+     A  R+ + A PLHLA + G  +V+K L+  N  P+
Sbjct: 88  SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 223 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDV 282
               +D S  + L  A   G+  +V+ +L+       IN  +  GNT+LH A +  H  V
Sbjct: 147 K---KDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFV 200
Query: 283 VFTLSRHKSVNIRAKNRSAR 302
           V  L  H   +++  N+  R
Sbjct: 201 VELLLLH-GASVQVLNKRQR 219

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 174 GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS 233
           GN   V+  L+ ++    + D +G +PLH A   G   V+++LI +    I + +  D +
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDT 69
Query: 234 ILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274
            LH+AA HG+ +IV  +L   + +  IN ++ +GN  LH A
Sbjct: 70  PLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYA 107

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA   ++++V+ LL+    +    D +G+TPLH
Sbjct: 27  DDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           LAA  G L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 86  LAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 173 SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDR 232
            GN   V+  L+ ++    + D +G +PLH A   G   V+++LI +    I + +  D 
Sbjct: 15  EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDD 73
Query: 233 SILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
           + LH+AA HG+ +IV  +L   + +  IN ++ +GN  LH A  
Sbjct: 74  TPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
           LH A+  G++  V+ LL+       K D  G TPLH A  +G LKV++LL+ ++   +  
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLL-QHKALVNT 71
Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
               + S LH AAK+G+ +IV  +L      N +N+ 
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D+    PLH AA  G++++V+ LL+    +    +  G TPLH
Sbjct: 27  DDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN-TGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           LAA    L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 86  LAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V+ L+     +A K D NG+TPLHLAA NG L+V+KLL+    D +  +D 
Sbjct: 31  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDK 88
Query: 230 SDRSILHVAAKHGNWNIVSFI 250
             ++   ++  +GN ++   +
Sbjct: 89  FGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V+ L+     +A K D NG+TPLHLAA NG L+V+KLL+    D +  +D 
Sbjct: 13  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDK 70
Query: 230 SDRSILHVAAKHGNWNIVSFI 250
             ++   ++  +GN ++   +
Sbjct: 71  FGKTAFDISIDNGNEDLAEIL 91

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256
           G T L LA  +G + V+K L+    D + ++D+   + L  A +HG+  I   +L  P  
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC 241
Query: 257 ENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR 295
           +  I+L DR+G+T+L +A     S++   L  +  +NI+
Sbjct: 242 D--ISLTDRDGSTALMVALDAGQSEIASML--YSRMNIK 276

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
           N L  AAA G+++ +  LL+ +  +  +    G T L  +   N E+    LL    PD 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
             ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN  LHLAA   H  VV
Sbjct: 65  --LKDRTGFAVIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
             L +H + N+  +N
Sbjct: 120 EFLVKHTASNVGHRN 134

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
           N L  AAA G+++ +  LL+ +  +  +    G T L  +   N E+    LL    PD 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
             ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN  LHLAA   H  VV
Sbjct: 65  --LKDRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
             L +H + N+  +N
Sbjct: 120 EFLVKHTASNVGHRN 134

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
           +H  AA G +  ++  L     L  K D  G TPL  A+  GE++ ++ L+    D   I
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286
                 S L +A+  G  +IV  +L   E +  IN+ D NG T L  A  G H   V  L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
           +H  AA G +  ++  L     L  K D  G TPL  A+  GE++ ++ L+    D   I
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286
                 S L +A+  G  +IV  +L   E +  IN+ D NG T L  A  G H   V  L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
           Q+ PLH A  +   ++ + LL A       RD  G TPLHLA E G L  + +L      
Sbjct: 45  QQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 223 A-----IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR-NGNTSLHLAAM 276
                 ++  + +  + LH+A+ HG   IV  ++    +   +N  +  NG T+LHLA  
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVD 160
Query: 277 GLHSDVV 283
             + D+V
Sbjct: 161 LQNPDLV 167

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEA--SKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
           DW   +PLH AA  G+    + LL A  S+    K D    TPLH+AA  G   ++++L+
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD---RTPLHMAASEGHANIVEVLL 87
Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
               D +  +D    + LH A +H +  +V  ++K
Sbjct: 88  KHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           AA +G    V+ L+  +    +  D  G +PLHLAA+ G     ++L+ +   + + R  
Sbjct: 9   AARAGQDDEVRILM--ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTK 65
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
            DR+ LH+AA  G+ NIV  +LK     N  +++     T+LH A    H +VV  L ++
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM---TALHWATEHNHQEVVELLIKY 122
Query: 290 KSVNIRAKNRSARNNTTLEID 310
              ++  +++  +    + ID
Sbjct: 123 -GADVHTQSKFCKTAFDISID 142

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
           Q+ PLH A  +   ++ + LL A       RD  G TPLHLA E G L  + +L      
Sbjct: 42  QQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 223 A-----IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR-NGNTSLHLAAM 276
                 ++  + +  + LH+A+ HG   IV  ++    +   +N  +  NG T+LHLA  
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVD 157
Query: 277 GLHSDVV 283
             + D+V
Sbjct: 158 LQNPDLV 164

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
           N L  AAA G+++ +  LL+ +  +  +    G T L  +   N E+    LL    PD 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
             ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN  LHLAA   H  VV
Sbjct: 65  --LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
             L +H + N+  +N
Sbjct: 120 EFLVKHTASNVGHRN 134

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
           N L  AAA G+++ +  LL+ +  +  +    G T L  +   N E+    LL    PD 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
             ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN  LHLAA   H  VV
Sbjct: 65  --LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
             L +H + N+  +N
Sbjct: 120 EFLVKHTASNVGHRN 134

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
           D  V+IL  N   +N  D     PLH AA + ++++V+ LL+    +    D  G TPLH
Sbjct: 27  DDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           L A  G L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 86  LVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
           N L  AAA G+++ +  LL+ +  +  +    G T L  +   N E+    LL    PD 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
             ++D +  +++H AA+ G  + +  +L   E +  +N+ D  GN  LHLAA   H  VV
Sbjct: 65  --LKDRTGFAVIHDAARAGFLDTLQTLL---ENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
             L +H + N+  +N
Sbjct: 120 EFLVKHTASNVGHRN 134

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221
           ++++ L  AA SGN + +  LL       +  D   +TPLHLAA    +++++LL+    
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
           D +  +D      LH A  +G++ +   +LK     N ++L
Sbjct: 83  D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 37/152 (24%)
Query: 170 AAASGNVQMVQRL------------------------------LEASKQLAYK--RDCNG 197
           AAA G+VQ V+RL                              LE  KQ A    +D +G
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 68
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
            +P+H AA  G L  LK+L+    D + + D +    +H+A + G+  +VSF+    ++ 
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127
Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
                 D  G T L LA      D+V  L  H
Sbjct: 128 RR----DARGLTPLELALQRGAQDLVDILQGH 155

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 37/152 (24%)
Query: 170 AAASGNVQMVQRL------------------------------LEASKQLAYK--RDCNG 197
           AAA G+VQ V+RL                              LE  KQ A    +D +G
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 74
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
            +P+H AA  G L  LK+L+    D + + D +    +H+A + G+  +VSF+    ++ 
Sbjct: 75  TSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 133
Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
                 D  G T L LA      D+V  L  H
Sbjct: 134 RR----DARGLTPLELALQRGAQDLVDILQGH 161

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 43/232 (18%)
Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLF--GMR--DIEGN---TPLHNV 55
           +TPLHIA   G+          +PAV++      L  LF  G R  DI  N   TPLH  
Sbjct: 10  DTPLHIAVVQGN----------LPAVHR------LVNLFQQGGRELDIYNNLRQTPLHLA 53
Query: 56  VTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES---LNAT 112
           V      V+R+LV   ++P + +++  QT   +A + R       ++D ++     L A 
Sbjct: 54  VITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA- 111
Query: 113 RLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ-RNPLHYAA 171
           R  D LT LH  V   N +  +++Q L         L    D I+ +D    R+PL +A 
Sbjct: 112 RNYDGLTALHVAV---NTECQETVQLL---------LERGAD-IDAVDIKSGRSPLIHAV 158
Query: 172 ASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
            + ++ MVQ LL+    +  +   +G++ LH A+  G L +++ L+    D+
Sbjct: 159 ENNSLSMVQLLLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLVRSGADS 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-23
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-24
2pnn_A	273	Transient receptor potential cation channel subfa	4e-20
2pnn_A	273	Transient receptor potential cation channel subfa	2e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-20
2etb_A	256	Transient receptor potential cation channel subfam	1e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-07
2rfa_A	232	Transient receptor potential cation channel subfa	6e-20
2rfa_A	232	Transient receptor potential cation channel subfa	3e-19
2rfa_A	232	Transient receptor potential cation channel subfa	4e-19
2rfa_A	232	Transient receptor potential cation channel subfa	2e-18
2rfa_A	232	Transient receptor potential cation channel subfa	6e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  132 bits (335), Expect = 6e-34
 Identities = 68/298 (22%), Positives = 117/298 (39%), Gaps = 37/298 (12%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TPLH+A+ +G   IV  +++   + N               +++  TPLH      H  
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNV-------------SNVKVETPLHMAARAGHTE 61

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           V + L++  +  ++   K  QTPL  A  +   ++   +++ ++   N        T LH
Sbjct: 62  VAKYLLQNKAKVNA-KAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATT-AGHTPLH 118

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                 + +              V  L   +     +      PLH AA  G V++ + L
Sbjct: 119 IAAREGHVE-------------TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 242
           LE           NG TPLH+A  +  L ++KLL+ +          +  + LH+AAK  
Sbjct: 166 LERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQN 223

Query: 243 NWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 298
              +    +          N     G T LHLAA   H+++V   LS+  + N+  K+
Sbjct: 224 QVEVARSLLQYGGS----ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (331), Expect = 2e-33
 Identities = 71/312 (22%), Positives = 122/312 (39%), Gaps = 46/312 (14%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
           TPLH+AA+ G   +   +++     N                  G TPLH  V   +  +
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNA-------------AGKNGLTPLHVAVHHNNLDI 194

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
           +++L+ +  +P S       TPL IA      ++A  ++       NA      +T LH 
Sbjct: 195 VKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANA-ESVQGVTPLHL 251

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
                + +             MV +L + +   N  +     PLH  A  G+V +   L+
Sbjct: 252 AAQEGHAE-------------MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298

Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
           +    +       G TPLH+A+  G +K++K L+    D +  +     S LH AA+ G+
Sbjct: 299 KHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGH 356

Query: 244 WNIVSFILKSPEMEN--LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS----VNIRAK 297
            +IV+ +L     +N    N +  +G T L +A    +  V   L         V +  K
Sbjct: 357 TDIVTLLL-----KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411

Query: 298 NRSARNNTTLEI 309
           +R     +  E 
Sbjct: 412 HR----MSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  120 bits (303), Expect = 1e-29
 Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 41/277 (14%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TPLH+A    +  IV  ++    + +                  G TPLH    +    
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPH-------------SPAWNGYTPLHIAAKQNQVE 226

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           V R L++   + ++  +    TPL +A      ++   ++ K +   N       LT LH
Sbjct: 227 VARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGN-KSGLTPLH 283

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
                 +               +  +L   G     ++        PLH A+  GN+++V
Sbjct: 284 LVAQEGHVP-------------VADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLV 327

Query: 180 QRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
           + LL+  A       +   G +PLH AA+ G   ++ LL+           +   + L +
Sbjct: 328 KFLLQHQADVN---AKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAI 383

Query: 238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274
           A + G  ++   +    +  + + + D++  +     
Sbjct: 384 AKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  116 bits (294), Expect = 2e-28
 Identities = 68/300 (22%), Positives = 113/300 (37%), Gaps = 74/300 (24%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D+TPLH AARIG   +V  +++     N             +    G+TPLH    + H 
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPN-------------LATTAGHTPLHIAAREGHV 126

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
             +  L+EK+++ +  + K   TPL +A       +A  ++++                 
Sbjct: 127 ETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLLER----------------- 168

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
                                         +    N    +   PLH A    N+ +V+ 
Sbjct: 169 ----------------------------DAH---PNAAGKNGLTPLHVAVHHNNLDIVKL 197

Query: 182 LLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239
           LL    S         NG TPLH+AA+  +++V + L+               + LH+AA
Sbjct: 198 LLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAA 253

Query: 240 KHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
           + G+  +V+  + K        NL +++G T LHL A   H  V   L +H  V + A  
Sbjct: 254 QEGHAEMVALLLSKQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATT 308

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (286), Expect = 2e-27
 Identities = 60/258 (23%), Positives = 95/258 (36%), Gaps = 59/258 (22%)

Query: 44  RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIID 103
               G TPLH      H  +++ L+++ ++P+   N   +TPL +A      ++A +++ 
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
                                                               +N      
Sbjct: 69  N---------------------------------------------KAK---VNAKAKDD 80

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAY--KRDCNGATPLHLAAENGELKVLKLLINKYP 221
           + PLH AA  G+  MV+ LLE     A        G TPLH+AA  G ++ +  L+ K  
Sbjct: 81  QTPLHCAARIGHTNMVKLLLE---NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137

Query: 222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSD 281
                      + LHVAAK+G   +   +L   E +   N   +NG T LH+A    + D
Sbjct: 138 S-QACMTKKGFTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHHNNLD 193

Query: 282 VV-FTLSRHKSVNIRAKN 298
           +V   L R  S +  A N
Sbjct: 194 IVKLLLPRGGSPHSPAWN 211

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  102 bits (256), Expect = 2e-23
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 14/148 (9%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
                     PLH A+  G++ +V+ LL+  AS       +    TPLH+AA  G  +V 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVA 63

Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL--INLIDRNGNTSL 271
           K L+      +  +   D++ LH AA+ G+ N+V  +L     EN    NL    G+T L
Sbjct: 64  KYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLL-----ENNANPNLATTAGHTPL 117

Query: 272 HLAAMGLHSDVV-FTLSRHKSVNIRAKN 298
           H+AA   H + V   L +  S     K 
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKK 145

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  123 bits (310), Expect = 7e-32
 Identities = 46/286 (16%), Positives = 82/286 (28%), Gaps = 26/286 (9%)

Query: 3   ETPLHIAARIGDHAIVSEIMKY---VPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKK 59
           +T LH+A        +  ++ +      ++             +++  G T LH      
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLD-------------LQNDLGQTALHLAAILG 56

Query: 60  HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT 119
               +  L    +       +   T L +A  VR +  AC ++             D   
Sbjct: 57  EASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS--DTYL 113

Query: 120 LLHFFVMRQNYDLSKSMQFLQ-FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM 178
                          ++       +         +  +   ++    PLH A    + +M
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173

Query: 179 VQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238
           V+ L +A   L       G TPLHLA E     VL+LL+    D    R    R+ L  A
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSA 232

Query: 239 AKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
               N  +                    +  +    +     SD  
Sbjct: 233 LLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  100 bits (251), Expect = 7e-24
 Identities = 43/278 (15%), Positives = 89/278 (32%), Gaps = 42/278 (15%)

Query: 40  LFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY---QTPLSIAIDVRLND 96
           +FG    +G+T LH  V  +H+  +  L+    A   Y++      QT L +A  +    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFS-AGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 97  IACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL------- 149
               +    +  +         T LH     + +                 +L       
Sbjct: 60  TVEKLYAAGAG-VLVAER-GGHTALHLACRVRAHT-------------CACVLLQPRPSH 104

Query: 150 ---GTNKDLINRLDWHQRN---PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203
               ++  L    D        P    +        +   E  +      + +G TPLH+
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV 164

Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSD-RSILHVAAKHGNWNIVSFILKSPEMEN--LI 260
           A  + + ++++LL +   D +   + +  R+ LH+A +    +++  +L     +     
Sbjct: 165 AVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLL-----KAGADP 218

Query: 261 NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
                 G T L  A +  +  +   L  H         
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHG-APEPEDG 255

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 6e-17
 Identities = 35/223 (15%), Positives = 70/223 (31%), Gaps = 26/223 (11%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            T LH+A R+  H     +++  P+  +  S + L           + P         + 
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
                 E         N    TPL +A+  +  ++   + D  ++ LN        T LH
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLH 197

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
             V  Q                ++++L   G +        +  R PL  A    N  + 
Sbjct: 198 LAVEAQAAS-------------VLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILA 241

Query: 180 QRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKY 220
           + L    A +    +   +  +P   +  + +        ++Y
Sbjct: 242 RLLRAHGAPE---PEDGGDKLSPCSSSGSDSDSDNRDEG-DEY 280

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 2e-30
 Identities = 45/319 (14%), Positives = 94/319 (29%), Gaps = 61/319 (19%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
              +H+AAR G    V  +++   +                ++  G T LH         
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSPTI-------------QNRFGCTALHLACKFGCVD 67

Query: 63  VIRILVEKDSAPSSYINKAY-QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
             + L           +  + Q P+ +A+     D+   +++ + E              
Sbjct: 68  TAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALVEGAKE--------RGQMPE 115

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGN--VQMV 179
                    +                    N+   +      +  LH+    G   ++M+
Sbjct: 116 SLLNECDERE-------------------VNEIGSHVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 180 QRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA----IEIRDNSDRS 233
           + L++  AS      +D    TPL  A E    + L L+++  P      ++  +    S
Sbjct: 157 KILVQLGASPT---AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213

Query: 234 ILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSV 292
            LH A      ++    +    +    +N+ D      L+L+       +   L +   V
Sbjct: 214 HLHWAILINWEDVAMRFVEMGID----VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269

Query: 293 NIRAKNRSARNNTTLEIDE 311
            +          T L    
Sbjct: 270 FLIQACPYHNGTTVLPDRV 288

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  115 bits (291), Expect = 2e-28
 Identities = 47/302 (15%), Positives = 104/302 (34%), Gaps = 51/302 (16%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVN--------QAGSASVLETLFGMRDIEGNTPLH 53
            + P+H+A       +V  +++              +     V E    ++  +G T LH
Sbjct: 84  GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH 143

Query: 54  NVVT--KKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNA 111
             V    ++  +I+ILV+  ++P++  +KA +TPL  A++ R  +    ++D      + 
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTA-KDKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202

Query: 112 ---TRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRN 165
                     + LH+ ++    D             +       G +   +N  D     
Sbjct: 203 RLDYANKQGNSHLHWAILINWED-------------VAMRFVEMGID---VNMEDNEHTV 246

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYK------------RDCNGATPLHLAAENGELKVL 213
           PL+ +  +  V + + LL+ +     +                    +  AA+  + +VL
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLH 272
           +LL  K  + +    N+         K     +    +  S      +    R+   S  
Sbjct: 307 QLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP----VRTRSRSRARSSA 361

Query: 273 LA 274
           ++
Sbjct: 362 VS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 94.9 bits (237), Expect = 2e-21
 Identities = 28/163 (17%), Positives = 48/163 (29%), Gaps = 29/163 (17%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
             + D      +H AA  G    V+RL+E   S      ++  G T LHLA + G +   
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT---IQNRFGCTALHLACKFGCVDTA 69

Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
           K L +             +  +H+A      ++V           L+      G     L
Sbjct: 70  KYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVA---------LVEGAKERGQMPESL 117

Query: 274 AAMGLHSDVVFTLSRHKSVNIRAKNR-------SARNNTTLEI 309
                  +V          +++                  LE+
Sbjct: 118 LNECDEREVN-----EIGSHVKHCKGQTALHWCVGLGPEYLEM 155

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 91.5 bits (228), Expect = 3e-20
 Identities = 38/263 (14%), Positives = 72/263 (27%), Gaps = 76/263 (28%)

Query: 44  RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIID 103
            D E    +H    K     +R L+E   +P+   N+   T L +A      D A ++  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSPTI-QNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
                                                         G          WH 
Sbjct: 75  V---------------------------------------------GEVHS-----LWHG 84

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           + P+H A  +    +V  L+E +          G  P  L  E  E +V ++  +     
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNECDEREVNEIGSH----- 132

Query: 224 IEIRDNSDRSILHVAAKHGNWN--IVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHS 280
             ++    ++ LH     G     ++   +             D+   T L  A    + 
Sbjct: 133 --VKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS----PTAKDKADETPLMRAMEFRNR 186

Query: 281 DVVFTL----SRHKSVNIRAKNR 299
           + +  +        S+ +   N+
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANK 209

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  116 bits (294), Expect = 1e-29
 Identities = 53/273 (19%), Positives = 102/273 (37%), Gaps = 41/273 (15%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
            +E N  L   V  +   +++ L+E  +  +    +   TPL  A+ +   DI   ++  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDW 161
            ++     +  +  T      +  +               ++K+    G +   +N  D+
Sbjct: 62  GAD-PVLRKK-NGATPFLLAAIAGSVK-------------LLKLFLSKGAD---VNECDF 103

Query: 162 HQRNPLHYAAASGNVQMVQRLLEA---------SKQLAYKRDCNGATPLHLAAENGELKV 212
           +       AA  G V+ ++ L +          +K+   +    GAT L  AAE G ++V
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 213 LKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRN 266
           LK+L+++    +   DN  R+ L  A    + + V  I        L+      N+    
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI-----THLLLDHGADVNVRGER 218

Query: 267 GNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
           G T L LA    H  +V  L   + + I   + 
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  114 bits (289), Expect = 7e-29
 Identities = 59/305 (19%), Positives = 113/305 (37%), Gaps = 34/305 (11%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D   L  A +  D  +V ++++    VN               +  G TPLHN V    +
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE------------EEGGWTPLHNAVQMSRE 52

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            ++ +L+   + P     K   TP  +A       +    + K ++ +N        T  
Sbjct: 53  DIVELLLRHGADPVL-RKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDF-YGFTAF 109

Query: 122 HFFVMRQNYDLSKSMQFL--QFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
               +       K   FL  +  ++ ++     K+   RL       L  AA  G+V+++
Sbjct: 110 MEAAVYGKVKALK---FLYKRGANVNLR--RKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 180 QRLLEASKQLAY--KRDCNGATPLHLAAENGELK----VLKLLINKYPDAIEIRDNSDRS 233
           + LL   +  A     D  G   L  A  + +      +  LL++   D + +R    ++
Sbjct: 165 KILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKT 221

Query: 234 ILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN 293
            L +A +  +  +V  +L+   +E  IN  D +G T+L LA       +   L +    +
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELKLKKIAELLCKRG-AS 278

Query: 294 IRAKN 298
               +
Sbjct: 279 TDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 85.6 bits (213), Expect = 8e-19
 Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 47/243 (19%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TP  +AA  G   ++   +     VN+              D  G T           +
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNE-------------CDFYGFTAFMEAAVYGKVK 119

Query: 63  VIRILVE---------KDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATR 113
            ++ L +         K       + K   T L  A +    ++   ++D+    +NA  
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-- 177

Query: 114 LPDE--LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLH 168
             D      L   ++  +    +++           +L   G +   +N      + PL 
Sbjct: 178 -CDNMGRNALIHALLSSDDSDVEAI---------THLLLDHGAD---VNVRGERGKTPLI 224

Query: 169 YAAASGNVQMVQRLLEASKQLAY--KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
            A    ++ +VQRLL   ++       D +G T L LA E    K+ +LL  +     + 
Sbjct: 225 LAVEKKHLGLVQRLL--EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TDC 281

Query: 227 RDN 229
            D 
Sbjct: 282 GDL 284

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  113 bits (285), Expect = 6e-29
 Identities = 55/288 (19%), Positives = 98/288 (34%), Gaps = 72/288 (25%)

Query: 1   MDETPLHIAARIGDHAIVSEIMKYVPA-VNQAGSASVLETLFGMRDIEGNTPLHNVVTKK 59
           M   PLH A    +   V E++   P+ + Q             +D +G  PLH  V+ +
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLLLQ-------------KDQDGRIPLHWSVSFQ 47

Query: 60  HKRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE 117
              +   L+ K  +     Y + +  TP  IA  V   ++   + D+             
Sbjct: 48  AHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL----------- 96

Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
                                             +   +N++       LH A      +
Sbjct: 97  --------------------------------KPD---LNKITNQGVTCLHLAVGKKWFE 121

Query: 178 MVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSIL 235
           + Q L+E  AS +    +D     PLH AA  G LK+++LL      A+  +D    + L
Sbjct: 122 VSQFLIENGASVR---IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

Query: 236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
             A   G+ +    +++    E   +L+D  G  +  +A    +  V 
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVAL---NEQVK 221

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  105 bits (264), Expect = 5e-26
 Identities = 48/222 (21%), Positives = 82/222 (36%), Gaps = 25/222 (11%)

Query: 83  QTPLSIA-IDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQF 141
             PL  A ++     +   +  K S  L      D    LH+ V  Q ++          
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSL-LLQKDQ-DGRIPLHWSVSFQAHE---------- 50

Query: 142 IDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE-ASKQLAYKRDCNG 197
              +   L     N +L +  D     P H A + GN+++V+ L +   K    K    G
Sbjct: 51  ---ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG 107

Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
            T LHLA      +V + LI      + I+D  ++  LH AA  G+  ++  +    +  
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164

Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 298
           + +N  D+ G T L  A    H D     + ++        +
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-AEYDLVD 205

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  104 bits (263), Expect = 7e-26
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 8/162 (4%)

Query: 142 IDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
              + ++L +   L+ + D   R PLH++ +    ++   LL    +  L    D +G T
Sbjct: 15  FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT 74

Query: 200 PLHLAAENGELKVLKLLINKYPDA-IEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEME 257
           P H+A   G L+V+K L ++     +    N   + LH+A     + +  F I       
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-- 132

Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
             + + D+     LH AA      ++  L       +  +++
Sbjct: 133 --VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (284), Expect = 1e-28
 Identities = 54/292 (18%), Positives = 98/292 (33%), Gaps = 68/292 (23%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPA----VNQAGSASVLETLFGMRDIEGNTPLHNVVTK 58
           +TPLHIA   G+   V  ++         ++             + +    TPLH  V  
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVIT 56

Query: 59  KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL 118
               V+R+LV    A    +++  QT   +A + R       ++D       A    D  
Sbjct: 57  TLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDS-----AAPGTLD-- 108

Query: 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM 178
                                                +   ++     LH A  +   + 
Sbjct: 109 -------------------------------------LEARNYDGLTALHVAVNTECQET 131

Query: 179 VQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238
           VQ LLE    +      +G +PL  A EN  L +++LL+    + +  +  S  S LH A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSA 190

Query: 239 AKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           +  G   +V   +    +     +L + + +T L +A      D++   +  
Sbjct: 191 SGRGLLPLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (258), Expect = 4e-25
 Identities = 50/262 (19%), Positives = 93/262 (35%), Gaps = 62/262 (23%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA---YQTPLSIAIDVRLNDIACFI 101
           D +G+TPLH  V + +   +  LV         ++      QTPL +A+   L  +   +
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 102 IDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161
           +                                               G +      LD 
Sbjct: 66  VTA---------------------------------------------GAS---PMALDR 77

Query: 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAY---KRDCNGATPLHLAAENGELKVLKLLIN 218
           H +   H A    +   ++ LL+++         R+ +G T LH+A      + ++LL+ 
Sbjct: 78  HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137

Query: 219 KYPDAIEIRDNSD-RSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAM 276
           +  D I+  D    RS L  A ++ + ++V   +         +N    +G+++LH A+ 
Sbjct: 138 RGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASG 192

Query: 277 GLHSDVVFTLSRHKSVNIRAKN 298
                +V TL R    +   KN
Sbjct: 193 RGLLPLVRTLVRSG-ADSSLKN 213

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.5 bits (244), Expect = 3e-23
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQL-AY--KRDCNGATPLHLAAENGELK 211
           +  R D     PLH A   GN+  V RL+   +Q        +    TPLHLA       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 212 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTS 270
           V++LL+          D   ++  H+A +H +   +   +  +      +   + +G T+
Sbjct: 61  VVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 271 LHLAAMGLHSDVV-FTLSRHKSVNIRAKN 298
           LH+A      + V   L R   ++     
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIK 148

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.4 bits (228), Expect = 5e-21
 Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 15/152 (9%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
           ++  +  ++ PLH A  +    +V+ L+   AS       D +G T  HLA E+     L
Sbjct: 39  LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTCL 95

Query: 214 KLLINK---YPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRN-GN 268
           + L++        +E R+    + LHVA        V   + +  +    I+ +D   G 
Sbjct: 96  RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD----IDAVDIKSGR 151

Query: 269 TSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS 300
           + L  A       +V  L +H   N+ A+  S
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHG-ANVNAQMYS 182

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 79.8 bits (198), Expect = 5e-17
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 189 LAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA---IEIRDNSDRSILHVAAKHGNWN 245
           +A + D +G TPLH+A   G L  +  L+N +      ++I +N  ++ LH+A      +
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 246 IVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH---KSVNIRAKNR 299
           +V   +            +DR+G T+ HLA        +  L       ++++ A+N 
Sbjct: 61  VVRLLVTAGAS----PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (279), Expect = 5e-28
 Identities = 52/305 (17%), Positives = 93/305 (30%), Gaps = 83/305 (27%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
              +  A + G +    E+++    V Q              D E  T LH         
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYDVRQ-------------PDKENVTLLHWAAINNRID 56

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           +++  + K +           TPL  A                                 
Sbjct: 57  LVKYYISKGAIVDQLGGDLNSTPLHWAT-------------------------------- 84

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
               RQ +           + + V  L   G +    + +D    + +H AA  G+  +V
Sbjct: 85  ----RQGH-----------LSM-VVQLMKYGAD---PSLIDGEGCSCIHLAAQFGHTSIV 125

Query: 180 QRLLE--ASKQLAYKRDCNGATPLHLAAENG-ELKVLKLLINKYPDAIEIRDNSDRSI-L 235
             L+            D NG TPL  AA     +   +LL+      + + D   ++  L
Sbjct: 126 AYLIAKGQDVD---MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTAL 181

Query: 236 HVAAKHGNWNIVSFILKSPEMEN--LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN 293
           H A   GN  ++S +L     E    ++  +  G ++L LA    +  ++  L   +   
Sbjct: 182 HWAVLAGNTTVISLLL-----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR-QA 235

Query: 294 IRAKN 298
               N
Sbjct: 236 KGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.1 bits (230), Expect = 2e-21
 Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 27/169 (15%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
           +  +D +    +  A   G  +  + L+E     +   + D    T LH AA N  + ++
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVR---QPDKENVTLLHWAAINNRIDLV 58

Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNG 267
           K  I+K     ++  + + + LH A + G+ ++V           L+      +LID  G
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ---------LMKYGADPSLIDGEG 109

Query: 268 NTSLHLAAMGLHSDVV-FTLSRHKSVNIRAKN------RSARNNTTLEI 309
            + +HLAA   H+ +V + +++ + V++  +N       +A    +++ 
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 90.2 bits (225), Expect = 1e-20
 Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 72/266 (27%)

Query: 44  RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIID 103
            D      +            R LVE                     DVR  D       
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAG------------------YDVRQPDK------ 40

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLD 160
                       + +TLLH+  +    D             +VK     G     +++L 
Sbjct: 41  ------------ENVTLLHWAAINNRID-------------LVKYYISKGAI---VDQLG 72

Query: 161 W-HQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
                 PLH+A   G++ MV +L++  A        D  G + +HLAA+ G   ++  LI
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNW-NIVSFILK---SPEMENLINLIDRNGNTSLHL 273
            K  D +++ D +  + L  AA   +  +    +L    S  + +       + NT+LH 
Sbjct: 130 AKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-----KYHKNTALHW 183

Query: 274 AAMGLHSDVVFTLSRHKSVNIRAKNR 299
           A +  ++ V+  L    + N+ A+N 
Sbjct: 184 AVLAGNTTVISLLLEAGA-NVDAQNI 208

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  113 bits (285), Expect = 8e-28
 Identities = 64/332 (19%), Positives = 114/332 (34%), Gaps = 74/332 (22%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVN--------------QAGSASVLETLFG------ 42
            TPLH+AA      IV  ++++   V+                G   V E L        
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118

Query: 43  MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFII 102
             D+   TPLH   +K    V  +L+   + P+  +N   ++ + +A    L +   +  
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL-VNCHGKSAVDMAPTPELRERLTYEF 177

Query: 103 DKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWH 162
                           +LL     R+             +  + K L        +    
Sbjct: 178 KGH-------------SLLQ--AAREAD-----------LAKVKKTLALEIINFKQ-PQS 210

Query: 163 QRNPLHYAAASG---NVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
               LH A AS      Q+ + LL   A+     +++ +  TPLH+AAE     V+++L 
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVN---EKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLIDRNGNTSLHLAA 275
                 +   D+  ++ LH AA  G+      +L           ++I   G T+  +  
Sbjct: 268 KHGAK-MNALDSLGQTALHRAALAGHLQTCRLLL-----SYGSDPSIISLQGFTAAQMG- 320

Query: 276 MGLHSDVVFTLSRHKSVNIRAKNRSARNNTTL 307
              +  V   LS  +S  +R  +     +  L
Sbjct: 321 ---NEAVQQILS--ESTPMRTSD----VDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  102 bits (256), Expect = 6e-24
 Identities = 52/324 (16%), Positives = 101/324 (31%), Gaps = 97/324 (29%)

Query: 2   DETPLHIAARIGDHAIVSEIM-KYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
            +  L  AAR G+   +  ++       +               D   +TPLH       
Sbjct: 24  KKDELLEAARSGNEEKLMALLTPLNVNCHA-------------SDGRKSTPLHLAAGYNR 70

Query: 61  KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120
            R++++L++      + ++                       DK             L  
Sbjct: 71  VRIVQLLLQHG----ADVHAK---------------------DK-----------GGLVP 94

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQ 180
           LH      +Y+             + ++L  +   +N +D  Q  PLH AA+   V++  
Sbjct: 95  LHNACSYGHYE-------------VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

Query: 181 RLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD---------------- 222
            LL   A        +C+G + + +A      + L      +                  
Sbjct: 142 LLLSHGADPT---LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198

Query: 223 ----AIEIRDNSDRSILHVAAKHGNWN---IVSF-ILKSPEMENLINLIDRNGNTSLHLA 274
                   +  S  + LH A    +     +    + K       +N  +++  T LH+A
Sbjct: 199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN----VNEKNKDFMTPLHVA 254

Query: 275 AMGLHSDVVFTLSRHKSVNIRAKN 298
           A   H+DV+  L +H    + A +
Sbjct: 255 AERAHNDVMEVLHKHG-AKMNALD 277

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 93.3 bits (233), Expect = 5e-21
 Identities = 47/265 (17%), Positives = 90/265 (33%), Gaps = 48/265 (18%)

Query: 44  RDIEGNTPLHNVVTKKH-KRVIRILVEKDSAPSSYINKAY---QTPLSIAIDVRLNDIAC 99
                   L       + ++++ +L   +       + +     TPL +A       I  
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLN----VNCHASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 100 FIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL 159
            ++   ++ ++A      L  LH      +Y+             + ++L  +   +N +
Sbjct: 76  LLLQHGAD-VHAKD-KGGLVPLHNACSYGHYE-------------VTELLLKHGACVNAM 120

Query: 160 DWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
           D  Q  PLH AA+   V++   LL   A        +C+G + + +A      + L    
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPT---LVNCHGKSAVDMAPTPELRERLTYEF 177

Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMG 277
             +              L  AA+  +   V   L     E +     ++  T+LH A   
Sbjct: 178 KGHS-------------LLQAAREADLAKVKKTLAL---EIINFKQPQSHETALHCAVAS 221

Query: 278 LHS---DVVFTLSRHK-SVNIRAKN 298
           LH     V   L R   +VN + K+
Sbjct: 222 LHPKRKQVAELLLRKGANVNEKNKD 246

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 90.2 bits (225), Expect = 7e-20
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
                 ++++ L  AA SGN + +  LL       +  D   +TPLHLAA    +++++L
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 216 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLA 274
           L+    D +  +D      LH A  +G++ +    +         +N +D    T LH A
Sbjct: 77  LLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC----VNAMDLWQFTPLHEA 131

Query: 275 AMGLHSDVVFTLSRHKSVNIRAKNR 299
           A     +V   L  H   +    N 
Sbjct: 132 ASKNRVEVCSLLLSHG-ADPTLVNC 155

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 41/269 (15%), Positives = 84/269 (31%), Gaps = 70/269 (26%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TPLH AA      + S ++ +                    +  G + +    T + + 
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTL-------------VNCHGKSAVDMAPTPELRE 171

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
            +    +              + L  A +  L  +   +     E +N  +     T LH
Sbjct: 172 RLTYEFKG------------HSLLQAAREADLAKVKKTLA---LEIINFKQPQSHETALH 216

Query: 123 FFVMRQNYDLSKSMQFL--QFIDI---------------------MVKIL---GTNKDLI 156
             V   +    +  + L  +  ++                     ++++L   G     +
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---M 273

Query: 157 NRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLK 214
           N LD   +  LH AA +G++Q  + LL   +           G T   +  E  +     
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS---IISLQGFTAAQMGNEAVQQ---- 326

Query: 215 LLINKYPDAIEIRDNSDRSILHVAAKHGN 243
            ++++    +   D   R  L  A+K G+
Sbjct: 327 -ILSESTP-MRTSDVDYR--LLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
            G + L LA  +                  +     +  L  AA+ GN   +  +L    
Sbjct: 3   FGKSALDLADPSA--------------KAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 298
           +    +  D   +T LHLAA      +V   L     V+ + K 
Sbjct: 49  VN--CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  108 bits (273), Expect = 4e-27
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 64/285 (22%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPA----VNQAGSASVLETLFGMRDIEGNTPLHNVVTK 58
           ++ LH+A    + A+  E+++ V      +N              ++    TPLH  V  
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-------------FQNNLQQTPLHLAVIT 55

Query: 59  KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL 118
               +   L+     P    +    TPL +A +         +    +            
Sbjct: 56  NQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTP---------- 104

Query: 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM 178
                                               ++   +++    LH A+  G + +
Sbjct: 105 --------------------------------HLHSILKATNYNGHTCLHLASIHGYLGI 132

Query: 179 VQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238
           V+ L+     +  +  CNG T LHLA +     ++ LL+    D +        S   + 
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLT 191

Query: 239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
               +  I    L    +E     +                ++  
Sbjct: 192 WGRPSTRIQQQ-LGQLTLE--NLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 98.8 bits (247), Expect = 9e-24
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 64/277 (23%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYIN---KAYQTPLSIAIDVRLNDIACFI 101
             +G++ LH  +  + K +   ++ +     +++N      QTPL +A+     +IA   
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA--- 61

Query: 102 IDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161
                          E  L                             G +       D+
Sbjct: 62  ---------------EALLGA---------------------------GCD---PELRDF 76

Query: 162 HQRNPLHYAAASGNVQMVQRLLE--ASKQLAY---KRDCNGATPLHLAAENGELKVLKLL 216
               PLH A   G +  V  L +   +  L       + NG T LHLA+ +G L +++LL
Sbjct: 77  RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136

Query: 217 INKYPDAIEIRDNSD-RSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLA 274
           ++   D +  ++  + R+ LH+A    N ++VS  +    +    +N +   G +   L 
Sbjct: 137 VSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLT 191

Query: 275 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDE 311
                + +   L +   +        + +  + + + 
Sbjct: 192 WGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTES 227

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  107 bits (270), Expect = 1e-26
 Identities = 56/259 (21%), Positives = 98/259 (37%), Gaps = 40/259 (15%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETL-------FGMRDIEGNTPLHNV 55
            TPL IA+  G             +  +  + +V+              D  G T LH  
Sbjct: 11  FTPLMIASCSGGGLETGN------SEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 56  VTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLP 115
                    + L+E  +  +   +   +TPL  A+      +   +I   +  L+A R+ 
Sbjct: 65  ARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMH 122

Query: 116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAA 172
           D  T L                       M++ L     +   +N +D   ++ LH+AAA
Sbjct: 123 DGTTPLILAARLAVEG-------------MLEDLINSHAD---VNAVDDLGKSALHWAAA 166

Query: 173 SGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS 230
             NV     LL+  A+K     ++    TPL LAA  G  +  K+L++ + +  +I D+ 
Sbjct: 167 VNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHM 222

Query: 231 DRSILHVAAKHGNWNIVSF 249
           DR    +A +  + +IV  
Sbjct: 223 DRLPRDIAQERMHHDIVRL 241

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 94.1 bits (235), Expect = 6e-22
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 12/188 (6%)

Query: 115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL-GTNKDLINRLDWHQRNPLHYAAAS 173
           PD  T L           + + +  +    ++         L N+ D      LH AA  
Sbjct: 8   PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY 67

Query: 174 GNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSD 231
                 +RLLE  A       +D  G TPLH A       V ++LI      ++ R +  
Sbjct: 68  SRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124

Query: 232 RSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK 290
            + L +AA+     ++   I    +    +N +D  G ++LH AA   + D    L ++ 
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 291 SVNIRAKN 298
             N   +N
Sbjct: 181 -ANKDMQN 187

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 73.3 bits (181), Expect = 8e-15
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 192 KRDCNGATPLHLAAENGE-------------LKVLKLLINKYPDAIEIRDNSDRSILHVA 238
            R  +G TPL +A+ +G                V+   I +        D +  + LH+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 239 AKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAK 297
           A++   +     +  S +     N+ D  G T LH A       V   L R+++ ++ A+
Sbjct: 65  ARYSRSDAAKRLLEASAD----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 298 NR 299
             
Sbjct: 121 MH 122

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 76/224 (33%)

Query: 3   ETPLHIAARIGDHAIVSE--IMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
            TPLH A       +  +  I      ++              R  +G TPL        
Sbjct: 91  RTPLHAAVSADAQGVF-QILIRNRATDLDA-------------RMHDGTTPLILAARLAV 136

Query: 61  KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120
           + ++  L+       + +N                       D               + 
Sbjct: 137 EGMLEDLINSH----ADVNAV---------------------DD-----------LGKSA 160

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQ 177
           LH+     N D                +L   G N    +  +  +  PL  AA  G+ +
Sbjct: 161 LHWAAAVNNVD-------------AAVVLLKNGAN---KDMQNNREETPLFLAAREGSYE 204

Query: 178 MVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
             + LL+  A++      D     P  +A E     +++LL  +
Sbjct: 205 TAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  108 bits (272), Expect = 5e-26
 Identities = 48/309 (15%), Positives = 91/309 (29%), Gaps = 47/309 (15%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
            +  L  A+  G               N+                    P        + 
Sbjct: 37  SQHSLLEASYDGYIKRQ---------RNEL-------------QHYSLYPNPQGYGNGND 74

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            +          P+          L          I   I  +S   +   R     T+L
Sbjct: 75  FLGDFNHTNLQIPTE-PEPESPIKLHTEAAGSY-AITEPITRESVN-IIDPR--HNRTVL 129

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
           H+     + +     + L  I    K        +N +D  +  PL  A  +   ++V  
Sbjct: 130 HWIASNSSAEK---SEDL--IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 182 LLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA--IEIRDNSDRSILHV 237
           L++  A        + +  + LH AA N +  ++  ++N       IE  D +  + L +
Sbjct: 185 LMKAGADPT---IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241

Query: 238 AAKHGNWNIVSF--ILKS------PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
            A +   + V+   +L         +     +     G T+LH AA   +  +V  L   
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 290 KSVNIRAKN 298
           K  N   ++
Sbjct: 302 KGSNKDKQD 310

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  107 bits (270), Expect = 1e-25
 Identities = 49/323 (15%), Positives = 106/323 (32%), Gaps = 52/323 (16%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQ-------------AGSASVLETLFG-----MR 44
             P       G+  +       +    +             AGS ++ E +       + 
Sbjct: 62  LYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNIID 121

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYI-------NKAYQTPLSIAIDVRLNDI 97
                T LH + +         L+  ++             +    TPL +A+  R   +
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181

Query: 98  ACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLIN 157
             +++   ++         E + LH     +++ +   M ++    +    L  +   I 
Sbjct: 182 VAYLMKAGAD-PTIYN-KSERSALHQAAANRDFGM---MVYM----LNSTKLKGD---IE 229

Query: 158 RLDWHQRNPLHYAAASGN---VQMVQRLLE-------ASKQLAYKRDCNGATPLHLAAEN 207
            LD +    L   A +     V   + L+E                   G T LH AA+ 
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

Query: 208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRN 266
             + ++K L+ +     + +D   ++ + +AA+ G   +V + I +       +  +D  
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDAT 345

Query: 267 GNTSLHLAAMGLHSDVVFTLSRH 289
            +T+  LA    H ++V    R 
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 25/152 (16%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
            ++     ++ L  A+  G ++  +  L                P      NG   +   
Sbjct: 30  NHQSITSSQHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDF 79

Query: 216 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI-DRNGNTSLHLA 274
                       +      LH  A  G++ I   I         +N+I  R+  T LH  
Sbjct: 80  NHTNLQI-PTEPEPESPIKLHTEAA-GSYAITEPIT-----RESVNIIDPRHNRTVLHWI 132

Query: 275 AMGLHSDVVFTLSRHKS-------VNIRAKNR 299
           A    ++    L  H++        ++ A + 
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  105 bits (265), Expect = 5e-26
 Identities = 49/251 (19%), Positives = 100/251 (39%), Gaps = 28/251 (11%)

Query: 43  MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFII 102
           M      +PLH      H  +  +LV+   A     ++  +TPL  A +    +   ++I
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 103 DKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDL-INRLDW 161
              +  ++     +  T LH    + +Y+             +V+ L +N  + +N  D 
Sbjct: 65  KAGAL-VDPKDA-EGSTCLHLAAKKGHYE-------------VVQYLLSNGQMDVNCQDD 109

Query: 162 HQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
               P+ +A    +V +V+ LL   +       RD      LH AA +G + + ++L+  
Sbjct: 110 GGWTPMIWATEYKHVDLVKLLLSKGSDIN---IRDNEENICLHWAAFSGCVDIAEILLAA 166

Query: 220 YPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGL 278
             D +   +    S LH+AA+   ++ V   + +  +    + L ++ G T L  A++  
Sbjct: 167 KCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD----VTLKNKEGETPLQCASLNS 221

Query: 279 HSDVVFTLSRH 289
                  +S+ 
Sbjct: 222 QVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 97.9 bits (245), Expect = 3e-23
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 9/146 (6%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
                 ++R+PLH AA +G+V +   L++  A+         +  TPL  AAEN  L+ +
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID---TCSEDQRTPLMEAAENNHLEAV 60

Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
           K LI      ++ +D    + LH+AAK G++ +V ++L + +M+  +N  D  G T +  
Sbjct: 61  KYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIW 117

Query: 274 AAMGLHSDVV-FTLSRHKSVNIRAKN 298
           A    H D+V   LS+   +NIR   
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNE 143

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.7 bits (242), Expect = 6e-23
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 17/160 (10%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
           +  +L   G N   I+     QR PL  AA + +++ V+ L++  A       +D  G+T
Sbjct: 26  ICHMLVQAGAN---IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGST 79

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMEN 258
            LHLAA+ G  +V++ L++     +  +D+   + +  A ++ + ++V   + K  +   
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD--- 136

Query: 259 LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
            IN+ D   N  LH AA     D+   L   K  ++ A N
Sbjct: 137 -INIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVN 174

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 81.3 bits (202), Expect = 1e-17
 Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 39/226 (17%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TPL  AA       V  ++K    V+              +D EG+T LH    K H  
Sbjct: 45  RTPLMEAAENNHLEAVKYLIKAGALVDP-------------KDAEGSTCLHLAAKKGHYE 91

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           V++ L+       +  +    TP+  A + +  D+   ++ K S+ +N     +E   LH
Sbjct: 92  VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDN-EENICLH 149

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
           +       D             + +IL     +   ++ ++ H  +PLH AA       V
Sbjct: 150 WAAFSGCVD-------------IAEILLAAKCD---LHAVNIHGDSPLHIAARENRYDCV 193

Query: 180 QRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
              L   +       ++  G TPL  A+ N ++     +     D+
Sbjct: 194 VLFLSRDSDVT---LKNKEGETPLQCASLNSQVWSALQMSKALQDS 236

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 4e-25
 Identities = 31/267 (11%), Positives = 83/267 (31%), Gaps = 52/267 (19%)

Query: 44  RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY-QTPLSIAIDVRLNDIACFII 102
            D+ G++  +  +   + R++  L+   +      N    + PL  A  +    I   ++
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLNAGAL----KNLLENEFPLHQAATLEDTKIVKILL 82

Query: 103 DKSSESLNATRLPDE--LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLIN 157
               +  +     D+   T L++ V   N                VK+            
Sbjct: 83  FSGLD-DSQF---DDKGNTALYYAVDSGNMQ-------------TVKLFVKKNWRLMFYG 125

Query: 158 RLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
           +  W  +   ++A    +V +V   L    S            + +H+  +NG + ++ L
Sbjct: 126 KTGW--KTSFYHAVMLNDVSIVSYFLSEIPSTF----DLAILLSCIHITIKNGHVDMMIL 179

Query: 216 LINKYPDAIEIRDNSDRS-ILHVAAKHGNWNIVSFILKSPEMENLINLIDR--NGNTSLH 272
           L++         ++      + +A  + +  ++              L     N  ++  
Sbjct: 180 LLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQA------------LFKYDINIYSANL 226

Query: 273 LAAMGLHSDVV-FTLSRHKSVNIRAKN 298
              +   +++    + +H      +  
Sbjct: 227 ENVLLDDAEIAKMIIEKHVEYKSDSYT 253

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 99.5 bits (249), Expect = 2e-23
 Identities = 38/157 (24%), Positives = 59/157 (37%), Gaps = 13/157 (8%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
            +K   ++KD   + D H  +  +YA A  NV++V  LL A    A K       PLH A
Sbjct: 14  QLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAG---ALKNLLENEFPLHQA 69

Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK--SPEMENLINL 262
           A   + K++K+L+    D     D+   + L+ A   GN   V   +K         +  
Sbjct: 70  ATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-----LMF 123

Query: 263 IDRNG-NTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
             + G  TS + A M     +V               
Sbjct: 124 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI 160

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.8 bits (203), Expect = 2e-17
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 9/130 (6%)

Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
              +   + ++  L +     +K D +G +  + A  +  ++++  L+N       + +N
Sbjct: 6   RINTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLEN 62

Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
                LH AA   +  IV  +L S       +  D  GNT+L+ A    +   V    + 
Sbjct: 63  --EFPLHQAATLEDTKIVKILLFS---GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 290 KS-VNIRAKN 298
              +    K 
Sbjct: 118 NWRLMFYGKT 127

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.0 bits (201), Expect = 4e-17
 Identities = 41/244 (16%), Positives = 89/244 (36%), Gaps = 45/244 (18%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           +E PLH AA + D  IV  ++      +Q              D +GNT L+  V   + 
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQ-------------FDDKGNTALYYAVDSGNM 108

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
           + +++ V+K+     Y    ++T    A+ +    I  + + +     +   L   L+ +
Sbjct: 109 QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP---STFDLAILLSCI 165

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNP-LHYAAASGNVQ 177
           H  +   + D             M+ +L    T+    N  +     P +  A  + +++
Sbjct: 166 HITIKNGHVD-------------MMILLLDYMTS---TNTNNSLLFIPDIKLAIDNKDIE 209

Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
           M+Q L +         D N  +         + ++ K++I K+ +  +    +    +  
Sbjct: 210 MLQALFK--------YDINIYSANLENVLLDDAEIAKMIIEKHVE-YKSDSYTKDLDIVK 260

Query: 238 AAKH 241
             K 
Sbjct: 261 NNKL 264

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  100 bits (252), Expect = 5e-25
 Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            +H  AA G +  ++  L     L  K D  G TPL  A+  GE++ ++ L+    D   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PH 63

Query: 226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMGLH 279
           I      S L +A+  G  +IV           L+      N+ D NG T L  A  G H
Sbjct: 64  ILAKERESALSLASTGGYTDIVGL---------LLERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 280 SDVV-FTLSRHKSVNIRAKN 298
              V   L+R   +   A +
Sbjct: 115 VKCVEALLARGADLTTEADS 134

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.8 bits (250), Expect = 1e-24
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 15/160 (9%)

Query: 145 MVKIL-GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPL 201
            +K       +L+N+ D     PL +A+A G ++ V+ LLE  A             + L
Sbjct: 17  QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH---ILAKERESAL 73

Query: 202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--L 259
            LA+  G   ++ LL+ +  D I I D +  + L  A +  +   V  +L          
Sbjct: 74  SLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALL-----ARGAD 127

Query: 260 INLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
           +     +G T + LA    +  V   +  H  + +   N 
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHI-LKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.4 bits (197), Expect = 1e-17
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256
            +  +H  A  GEL  LK  + K  + +   D    + L  A+  G    V F+L     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL----- 56

Query: 257 EN--LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
           E     +++ +   ++L LA+ G ++D+V  L     V+I   +
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERD-VDINIYD 99

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.8 bits (193), Expect = 5e-17
 Identities = 47/233 (20%), Positives = 73/233 (31%), Gaps = 73/233 (31%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D   +H  A  G+   + E +       + G   V +      D  G TPL         
Sbjct: 2   DSLSIHQLAAQGELDQLKEHL-------RKGDNLVNK-----PDERGFTPLIWASAFGEI 49

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
             +R L+E  + P   + K  ++ LS+         A                       
Sbjct: 50  ETVRFLLEWGADPHI-LAKERESALSL---------AS---------------------- 77

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQM 178
                   Y            DI V +L     +   IN  DW+   PL YA    +V+ 
Sbjct: 78  -----TGGY-----------TDI-VGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKC 117

Query: 179 VQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           V+ LL   A          +G TP+ LA   G  KV +++ N     +   + 
Sbjct: 118 VEALLARGADLT---TEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNL 166

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (254), Expect = 8e-25
 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 27/233 (11%)

Query: 48  GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIA-IDVRLNDIACFIIDKSS 106
           G   +   +     R    L  ++     YI     T         R   I    + + +
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 107 ESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNP 166
           E             LH    R N                ++    N+  +N LD      
Sbjct: 71  E--------SIDNPLHEAAKRGNLS-------------WLRECLDNRVGVNGLDKAGSTA 109

Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
           L++A   G+  +V+ L         +++  G T LH AA  G   +++LL+ K     ++
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDL 168

Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLH 279
           R+   +    +A      +++     +   + +  L +         + +  H
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGT---DAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (251), Expect = 2e-24
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
           +        NPLH AA  GN+  ++  L+           D  G+T L+ A   G   ++
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN---GLDKAGSTALYWACHGGHKDIV 122

Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLH 272
           ++L  +    +  ++    + LH AA  G  +IV   + K        +L +     +  
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR----TDLRNIEKKLAFD 178

Query: 273 LAAMGLHSDVVFTLSRHKSVNIRAKNRSARNN 304
           +A     + ++              N     +
Sbjct: 179 MATNAACASLLKKKQGTD-AVRTLSNAEDYLD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 95.8 bits (239), Expect = 8e-23
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 10/155 (6%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
               L   +  I  +            + G   ++            ++  +   PLH A
Sbjct: 27  TPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN------YVAEQAESIDNPLHEA 80

Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLID 264
           A+ G L  L+  ++     +   D +  + L+ A   G+ +IV  +   P +E  +N  +
Sbjct: 81  AKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE--LNQQN 137

Query: 265 RNGNTSLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 298
           + G+T+LH AA   ++D+V   L++    ++R   
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            +  A  +   +    L      + Y       T        G   ++          + 
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNY------VA 67

Query: 226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT 285
            +  S  + LH AAK GN + +   L +      +N +D+ G+T+L+ A  G H D+V  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDN---RVGVNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 286 LSRHKSVNIRAKNR 299
           L    ++ +  +N+
Sbjct: 125 LFTQPNIELNQQNK 138

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.9 bits (203), Expect = 6e-18
 Identities = 32/248 (12%), Positives = 62/248 (25%), Gaps = 51/248 (20%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           +  +  A    +     E+      +                    +T      +K    
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDII-------------YITDMSDTNWWKGTSKGRTG 59

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE--LTL 120
           +I      +        ++   PL  A            +D     +N     D+   T 
Sbjct: 60  LIPSNYVAEQ------AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGL---DKAGSTA 109

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKIL----GTNKDLINRLDWHQRNPLHYAAASGNV 176
           L++     + D             +V++L          +N+ +      LH AA  G  
Sbjct: 110 LYWACHGGHKD-------------IVEMLFTQPNIE---LNQQNKLGDTALHAAAWKGYA 153

Query: 177 QMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI 234
            +VQ LL   A       R+        +A       +LK           + +  D   
Sbjct: 154 DIVQLLLAKGARTD---LRNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSNAEDYLD 209

Query: 235 LHVAAKHG 242
              +    
Sbjct: 210 DEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 10/108 (9%)

Query: 192 KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 251
           K    G   +  A    E +    L  +  D I    +   +        G   ++    
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 252 KSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 298
                 N +     + +  LH AA   +   +     ++  VN   K 
Sbjct: 63  -----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA 105

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (254), Expect = 2e-24
 Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 79/310 (25%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLH---NVVTK 58
           D   +  A    +   +  ++ ++    +  + S  +         G T L      +  
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK-----DPETGKTCLLKAMLNLHN 67

Query: 59  KHKRVIRILVEKD----------SAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES 108
                I +L++            +A  +      QT L IAI+ R   +   +++  ++ 
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD- 126

Query: 109 LNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLH 168
                                            +          K       +    PL 
Sbjct: 127 ---------------------------------VQAAANGDFFKKTKGRPGFYFGELPLS 153

Query: 169 YAAASGNVQMVQRLLEASKQLAY--KRDCNGATPLHLAAENGELKVLKLL---------- 216
            AA +  + +V+ LL+ S Q A    RD  G T LH   E  +  V              
Sbjct: 154 LAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL 213

Query: 217 -----INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSL 271
                ++      EI +    + L +AA  G   ++++IL+           + +     
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR----------EIHEPECR 263

Query: 272 HLAAMGLHSD 281
           H AA   H  
Sbjct: 264 HAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.5 bits (222), Expect = 4e-20
 Identities = 35/178 (19%), Positives = 57/178 (32%), Gaps = 38/178 (21%)

Query: 164 RNPLHYAAAS---GNVQMVQRLLEASKQL----------AYKRDCNGATPLHLAAENGEL 210
           +  L  A  +   G    +  LL+ +++                  G T LH+A E   +
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

Query: 211 KVLKLLINKYPDAIEIRDNSDRSI--------------LHVAAKHGNWNIVSFILKSPEM 256
            ++ LL+    D ++   N D                 L +AA      IV F+L++   
Sbjct: 115 TLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ 173

Query: 257 ENLINLIDRNGNTSLHLAAMGLHSDVVFT----------LSRHKSVNIRAKNRSARNN 304
              I+  D  GNT LH       + V  T          L     ++   K     N 
Sbjct: 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR 231

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 39/274 (14%), Positives = 81/274 (29%), Gaps = 63/274 (22%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
            +     + + V + + + +  L+                        RL D        
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKK----------------RLTDS------- 46

Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFL----QFIDIMVKILGTNKDLINRLD 160
                         T L   ++  +   + ++  L    +  D + + +  +        
Sbjct: 47  -----EFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS---YTDSY 98

Query: 161 WHQRNPLHYAAASGNVQMVQRLLEA-------------SKQLAYKRDCNGATPLHLAAEN 207
           +  +  LH A    N+ +V  L+E               K         G  PL LAA  
Sbjct: 99  YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158

Query: 208 GELKVLKLLINKYPDA--IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI----- 260
            +L ++K L+        I  RD+   ++LH   +  +  + +    +     ++     
Sbjct: 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218

Query: 261 --------NLIDRNGNTSLHLAAMGLHSDVVFTL 286
                    + +R G T L LAA      V+  +
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  101 bits (253), Expect = 4e-24
 Identities = 49/291 (16%), Positives = 96/291 (32%), Gaps = 54/291 (18%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
            P       G   ++S      P +  A              +   +P+H      H+  
Sbjct: 35  KPAGPRDFPG-IRLLSN-----PLMGDA--------------VSDWSPMHEAAIHGHQLS 74

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
           +R L+ +     + I   + +PL  A           ++   ++ +N     D  T L  
Sbjct: 75  LRNLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTA-DWHTPLFN 131

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQ 180
             +  ++D              V +L   G +    +       +P+H AA  G+V+ V 
Sbjct: 132 ACVSGSWD-------------CVNLLLQHGASVQPES----DLASPIHEAARRGHVECVN 174

Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
            L+     + +K   +  TPL+LA EN +   +K L+    D +  +     S LH   +
Sbjct: 175 SLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVR 231

Query: 241 HGNWNIVSFILKSPEMEN--LINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
             +  +   ++     +        +  G   + L         +F L R 
Sbjct: 232 TASEELACLLM-----DFGADTQAKNAEGKRPVELVPPESPLAQLF-LERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  100 bits (251), Expect = 8e-24
 Identities = 44/247 (17%), Positives = 85/247 (34%), Gaps = 43/247 (17%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D +P+H AA  G    +  ++    AVN             +   +  +PLH      H 
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVN-------------IITADHVSPLHEACLGGHL 105

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
             ++IL++  +  +  +   + TPL  A      D    ++   + S+      D  + +
Sbjct: 106 SCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQPES--DLASPI 161

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQM 178
           H    R + +              V  L   G N   I+    H   PL+ A  +     
Sbjct: 162 HEAARRGHVE-------------CVNSLIAYGGN---IDHKISHLGTPLYLACENQQRAC 205

Query: 179 VQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           V++LLE  A       +     +PLH        ++  LL++   D  + ++   +  + 
Sbjct: 206 VKKLLESGADVN----QGKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVE 260

Query: 237 VAAKHGN 243
           +      
Sbjct: 261 LVPPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 39/277 (14%), Positives = 79/277 (28%), Gaps = 72/277 (25%)

Query: 8   IAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRIL 67
           + +    H   S ++           + +         ++G+ P         + +   L
Sbjct: 1   MGSSHHHHHHSSGLVPR--------GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPL 52

Query: 68  VEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR 127
           +            +  +P+  A           +I +                       
Sbjct: 53  MGDA--------VSDWSPMHEAAIHGHQLSLRNLISQ----------------------- 81

Query: 128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK 187
                                 G     +N +     +PLH A   G++  V+ LL+   
Sbjct: 82  ----------------------GWA---VNIITADHVSPLHEACLGGHLSCVKILLKHGA 116

Query: 188 QLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 247
           Q+      +  TPL  A  +G    + LL+      ++  ++   S +H AA+ G+   V
Sbjct: 117 QV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECV 173

Query: 248 SF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           +  I         I+    +  T L+LA        V
Sbjct: 174 NSLIAYGGN----IDHKISHLGTPLYLACENQQRACV 206

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 28/140 (20%)

Query: 170 AAASGNVQMVQRLLEA----SKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            ++  +      L+      +     +   +G+ P       G      LL N     + 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR----LLSN----PLM 53

Query: 226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMGLH 279
               SD S +H AA HG+   +          NLI      N+I  +  + LH A +G H
Sbjct: 54  GDAVSDWSPMHEAAIHGHQLSL---------RNLISQGWAVNIITADHVSPLHEACLGGH 104

Query: 280 SDVVFTLSRHKS-VNIRAKN 298
              V  L +H + VN    +
Sbjct: 105 LSCVKILLKHGAQVNGVTAD 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 97.5 bits (244), Expect = 8e-24
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 17/140 (12%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            +      GN   V+  L+ ++    + D +G +PLH A   G   V+++LI +    I 
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-IN 66

Query: 226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMGLH 279
           + +  D + LH+AA HG+ +IV         + L+      N ++ +GN  LH A     
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIV---------QKLLQYKADINAVNEHGNVPLHYACFWGQ 117

Query: 280 SDVVFTLSRHK-SVNIRAKN 298
             V   L  +   V+I  K 
Sbjct: 118 DQVAEDLVANGALVSICNKY 137

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 93.7 bits (234), Expect = 2e-22
 Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            V++      N   +N+ D H  +PLH+A   G   +V+ L+   A        +    T
Sbjct: 20  AVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN---VMNRGDDT 74

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN- 258
           PLHLAA +G   +++ L+    D I   +      LH A   G   +   ++      N 
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLV-----ANG 128

Query: 259 -LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK-SVNIRAKNRSARNNTT 306
            L+++ ++ G   +  A   L   +     +   ++N      +    TT
Sbjct: 129 ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
                +      G    ++L ++   + +   D+   S LH A + G   +V        
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-------- 55

Query: 256 MENLI------NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
            E LI      N+++R  +T LHLAA   H D+V  L ++K  +I A N
Sbjct: 56  -EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVN 102

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 37/237 (15%), Positives = 65/237 (27%), Gaps = 80/237 (33%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPA-VNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
             +    R G+   V   +      +NQ              D  G +PLH    +    
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQ-------------GDDHGFSPLHWACREGRSA 53

Query: 63  VIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120
           V+ +L+ +         IN                       ++            + T 
Sbjct: 54  VVEMLIMRGAR------INVM---------------------NR-----------GDDTP 75

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQ 177
           LH      + D             +V+ L     +   IN ++ H   PLHYA   G  Q
Sbjct: 76  LHLAASHGHRD-------------IVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQ 119

Query: 178 MVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK--YPDAIEIRDNS 230
           + + L+   A        +  G  P+  A       + +         + I  +D  
Sbjct: 120 VAEDLVANGALV---SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D+TPLH+AA  G   IV ++++Y   +N               +  GN PLH        
Sbjct: 72  DDTPLHLAASHGHRDIVQKLLQYKADINA-------------VNEHGNVPLHYACFWGQD 118

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIA 89
           +V   LV   +  S   NK  + P+  A
Sbjct: 119 QVAEDLVANGALVSI-CNKYGEMPVDKA 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 97.1 bits (243), Expect = 8e-24
 Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            +            IN  D     PL +AAA G + +V+ LL+  A  Q          +
Sbjct: 18  YLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ---LLGKGRES 71

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN- 258
            L LA   G   ++K+L++   D +   D +  + L  A    +   V  +L     E+ 
Sbjct: 72  ALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLL-----ESG 125

Query: 259 -LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
               +   +G  S+ LA    +  V   +  H  + +    +
Sbjct: 126 ADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 91.7 bits (229), Expect = 6e-22
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 21/126 (16%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
            +H  AA G +  +   +E           D  G TPL  AA +G++ V++ L+    D 
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD- 61

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMG 277
            ++      S L +A   G  +IV         + L+      N  D NG T L  A  G
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIV---------KMLLDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 278 LHSDVV 283
            H   V
Sbjct: 113 NHVKCV 118

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.7 bits (198), Expect = 1e-17
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
             +  +H  A  GE+  L   I +    I   D    + L  AA HG   +V F+L    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLL---- 56

Query: 256 MEN--LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 298
            +N     L+ +   ++L LA    ++D+V  L      VN    N
Sbjct: 57  -QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.5 bits (187), Expect = 3e-16
 Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 74/232 (31%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
              +H  A  G+   ++  ++    +N               D EG TPL          
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINH-------------TDEEGFTPLMWAAAHGQIA 50

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           V+  L++  + P   + K  ++ LS+         AC                       
Sbjct: 51  VVEFLLQNGADPQL-LGKGRESALSL---------AC----------------------- 77

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
                + Y            DI VK+L   G +   +N  DW+   PL YA    +V+ V
Sbjct: 78  ----SKGY-----------TDI-VKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 180 QRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
           + LLE  A          +G   + LA   G   V +++ +     +     
Sbjct: 119 KMLLESGADPT---IETDSGYNSMDLAVALGYRSVQQVIESHLLK-LLQNIK 166

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.7 bits (242), Expect = 8e-24
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 11/150 (7%)

Query: 142 IDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
           +  + ++L       + L+   +  L      G+  +   LL+  AS      +D +G +
Sbjct: 15  VQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN---VQDTSGTS 70

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
           P+H AA  G L  LK+L+    D + + D +    +H+A + G+  +VSF+    +    
Sbjct: 71  PVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAESD---- 125

Query: 260 INLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           ++  D  G T L LA      D+V  L  H
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 91.3 bits (228), Expect = 6e-22
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 9/136 (6%)

Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAI 224
           + L  AAA G+VQ V+RLL          +  G T L +    G   +   L+ +     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-P 61

Query: 225 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLIDRNGNTSLHLAAMGLHSDV 282
            ++D S  S +H AA+ G  + +  ++     E+   +N+ D  G   +HLA    H+ V
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLV-----EHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 283 VFTLSRHKSVNIRAKN 298
           V  L+    ++ R   
Sbjct: 117 VSFLAAESDLHRRDAR 132

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.6 bits (169), Expect = 6e-14
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---S 253
               L  AA  G+++ ++ L+++     +  +   ++ L V    G+  I   +LK   S
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 254 PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 298
                  N+ D +G + +H AA     D +  L  H   VN+    
Sbjct: 61  ------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.5 bits (161), Expect = 7e-13
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 26/175 (14%)

Query: 48  GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE 107
               L     +   + +R L+ ++      +N+  +T L + +      IA  ++ + + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGAS 60

Query: 108 SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQR 164
             N        + +H        D              +K+L   G +   +N  D    
Sbjct: 61  -PNVQD-TSGTSPVHDAARTGFLD-------------TLKVLVEHGAD---VNVPDGTGA 102

Query: 165 NPLHYAAASGNVQMVQRLLE-ASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
            P+H A   G+  +V  L   +      +RD  G TPL LA + G   ++ +L  
Sbjct: 103 LPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 36/186 (19%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPA-VNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
               L  AA  GD   V  ++       +               +  G T L  V+    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA-------------LNRFGKTALQ-VMMFGS 47

Query: 61  KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLN--DIACFIIDKSSESLNATRLPDEL 118
             +   L+++ ++P+   + +  +P+  A   R    D    +++  ++ +N        
Sbjct: 48  TAIALELLKQGASPNV-QDTSGTSPVHDA--ARTGFLDTLKVLVEHGAD-VNVPDG-TGA 102

Query: 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM 178
             +H  V   +               +V  L    D ++R D     PL  A   G   +
Sbjct: 103 LPIHLAVQEGHTA-------------VVSFLAAESD-LHRRDARGLTPLELALQRGAQDL 148

Query: 179 VQRLLE 184
           V  L  
Sbjct: 149 VDILQG 154

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 96.0 bits (240), Expect = 9e-24
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 22/146 (15%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
               +      LH A+  G++  V+ LL+  +       +D  G TPLH A  +G LKV+
Sbjct: 4   PFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVV 59

Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNG 267
           +LL+      +      + S LH AAK+G+ +IV           L+      N ++  G
Sbjct: 60  ELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKL---------LLSYGASRNAVNIFG 109

Query: 268 NTSLHLAAMGLHSDVVFTLSRHKSVN 293
              +          ++    +++S +
Sbjct: 110 LRPVDYTDDESMKSLLLLPEKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.4 bits (184), Expect = 3e-16
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            V+ L   G++    N  D     PLH A   G++++V+ LL+  A             +
Sbjct: 25  SVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN---TTGYQNDS 78

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           PLH AA+NG + ++KLL++         +      +         +++    K
Sbjct: 79  PLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.4 bits (184), Expect = 4e-16
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
            +  G T LH+A+  G++  ++ L+    D   ++D++  + LH A  HG+  +V  +L 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLL- 63

Query: 253 SPEMEN--LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
               ++  L+N      ++ LH AA   H D+V  L  +   +  A N
Sbjct: 64  ----QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVN 106

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TPLH A   G   +V  ++++   VN                 + ++PLH+     H  
Sbjct: 44  WTPLHEACNHGHLKVVELLLQHKALVNT-------------TGYQNDSPLHDAAKNGHVD 90

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNAT 112
           ++++L+    A  + +N     P+    D  +  +        +ES +A+
Sbjct: 91  IVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPE--KNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.9 bits (92), Expect = 6e-04
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 3  ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
          ET LHIA+  GD   V  +++     N              +D  G TPLH      H +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNV-------------KDHAGWTPLHEACNHGHLK 57

Query: 63 VIRILVEK 70
          V+ +L++ 
Sbjct: 58 VVELLLQH 65

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  100 bits (251), Expect = 1e-23
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 41/251 (16%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
           T LH A    +  +V  +++    +NQ              D EG  PLH   +  +  +
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANINQ-------------PDNEGWIPLHAAASCGYLDI 121

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
              L+ + +   + +N    TPL IA +  + ++    +++    +      +E  ++  
Sbjct: 122 AEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE-AARKEEERIML- 178

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
                              D   + L +      R        LH AAA G  ++++ L+
Sbjct: 179 ------------------RDA-RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 184 E--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
           +          +D +G TPLH AA  G+ +  ++L+    D +E  +   ++   VA + 
Sbjct: 220 QARYDVN---IKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED 275

Query: 242 GNWNIVSFILK 252
               +     K
Sbjct: 276 ILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.7 bits (247), Expect = 3e-23
 Identities = 58/304 (19%), Positives = 103/304 (33%), Gaps = 55/304 (18%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D      A   GD   V  +++    +N A             +++G T LH      + 
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYA-------------NVDGLTALHQACIDDNV 86

Query: 62  RVIRILVEKDSAPSSYINKA---YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL 118
            +++ LVE  +     IN+       PL  A      DIA ++I + +  + A    +  
Sbjct: 87  DMVKFLVENGAN----INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNS-EGD 140

Query: 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQM 178
           T L         +             +++        +NR                    
Sbjct: 141 TPLDIAEEEAMEE-------------LLQNE------VNRQGVDIEAARKEEERIMLRDA 181

Query: 179 VQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
            Q L     +     +   +G T LH+AA  G  +VLKLLI    D + I+D    + LH
Sbjct: 182 RQWLNSGHINDV---RHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLH 237

Query: 237 VAAKHGNWNIVSFILKSPEMENL--INLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNI 294
            AA  G       ++     ENL  +  +++ G T+  +A   +   +     +  ++  
Sbjct: 238 AAAHWGKEEACRILV-----ENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ-NLLH 291

Query: 295 RAKN 298
             K 
Sbjct: 292 SEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 96.0 bits (240), Expect = 4e-22
 Identities = 61/309 (19%), Positives = 104/309 (33%), Gaps = 67/309 (21%)

Query: 43  MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFII 102
           M D +             +  +   V K    +          L+        +    ++
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKR-KKTKVKFDDGAVFLAACSSGDT-EEVLRLL 60

Query: 103 DKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRL 159
           ++ ++ +N     D LT LH   +  N D             MVK L   G N   IN+ 
Sbjct: 61  ERGAD-INYAN-VDGLTALHQACIDDNVD-------------MVKFLVENGAN---INQP 102

Query: 160 DWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
           D     PLH AA+ G + + + L+   A        +  G TPL +A E    ++L+  +
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 218 NK----------------YPDA----------IEIRDNSDRSILHVAAKHGNWNIVSF-I 250
           N+                  DA                S  + LHVAA  G   ++   I
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 251 LKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS-------ARN 303
               +    +N+ D +G T LH AA     +    L  +   ++ A N+        A  
Sbjct: 220 QARYD----VNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEAVNKVGQTAFDVADE 274

Query: 304 NTTLEIDEM 312
           +    ++E+
Sbjct: 275 DILGYLEEL 283

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.9 bits (193), Expect = 4e-16
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
           +   D  Q+         G+   ++  +   K+   K   +       A  +G+ + +  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLR 58

Query: 216 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLIDRNGNTSLHL 273
           L+ +  D I   +    + LH A    N ++V F++     EN   IN  D  G   LH 
Sbjct: 59  LLERGAD-INYANVDGLTALHQACIDDNVDMVKFLV-----ENGANINQPDNEGWIPLHA 112

Query: 274 AAMGLHSDVVFTLSRHKSVNIRAKNR 299
           AA   + D+   L    + ++ A N 
Sbjct: 113 AASCGYLDIAEYLISQGA-HVGAVNS 137

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 95.6 bits (239), Expect = 7e-23
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 160 DWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
            +     L  A      ++ + L +         + D  G TPL++A  N ++++ K LI
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVD---EVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMG 277
           ++  D I ++++   S    A   G   I++++LK    +  +N  +R G  +L  AA  
Sbjct: 60  DRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPD--LNKHNRYGGNALIPAAEK 116

Query: 278 LHSDVVFTLSRHKSVNIRAKNR 299
            H D V  L      +I  +N 
Sbjct: 117 GHIDNVKLLLEDGREDIDFQND 138

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 91.4 bits (228), Expect = 2e-21
 Identities = 43/250 (17%), Positives = 81/250 (32%), Gaps = 65/250 (26%)

Query: 43  MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFII 102
           M+  E    L     +  K+V  IL                        V   D      
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEIL------------------QDTTYQVDEVDT----- 37

Query: 103 DKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRL 159
                        +  T L+  V   + +             + K L   G +   IN  
Sbjct: 38  -------------EGNTPLNIAVHNNDIE-------------IAKALIDRGAD---INLQ 68

Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
           +    +P  YA A G  +++  +L+ +     K +  G   L  AAE G +  +KLL+  
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128

Query: 220 YPDAIEIRDNSDRSILHVAAKHGNWN-----IVSF-ILKSPEMENLINLIDRNGNTSLHL 273
             + I+ +++   + L  A      N     IV   +    +     ++ D +G T++  
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDY 184

Query: 274 AAMGLHSDVV 283
           A    ++++ 
Sbjct: 185 ANQKGYTEIS 194

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 78.6 bits (195), Expect = 5e-17
 Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 77/260 (29%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
              L  A +     +   +      V++              D EGNTPL+  V      
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDE-------------VDTEGNTPLNIAVHNNDIE 53

Query: 63  VIRILVEK--DSAPSSYINKA---YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE 117
           + + L+++  D      IN       +P   A      +I  +++  ++  LN       
Sbjct: 54  IAKALIDRGAD------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH----- 102

Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
                                                     + +  N L  AA  G++ 
Sbjct: 103 ------------------------------------------NRYGGNALIPAAEKGHID 120

Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAA-----ENGELKVLKLLINKYPDAIEIRDNSDR 232
            V+ LLE  ++    ++  G T L  A            ++KLL+    D   I+DNS R
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGR 179

Query: 233 SILHVAAKHGNWNIVSFILK 252
           + +  A + G   I   + +
Sbjct: 180 TAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.5 bits (192), Expect = 1e-16
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           +       L  A +    KV ++L +     ++  D    + L++A  + +  I      
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKA--- 57

Query: 253 SPEMENLI------NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
                 LI      NL +   ++    A     ++++  + +H + ++   NR
Sbjct: 58  ------LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR 104

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 226 IRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVF 284
           ++     ++L  A +     +       + +    ++ +D  GNT L++A      ++  
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ----VDEVDTEGNTPLNIAVHNNDIEIAK 56

Query: 285 TLSRHKSVNIRAKN 298
            L      +I  +N
Sbjct: 57  ALIDRG-ADINLQN 69

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.8 bits (243), Expect = 1e-22
 Identities = 52/316 (16%), Positives = 100/316 (31%), Gaps = 38/316 (12%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D            H + S+ +     + +A  + V+      + ++    L  ++  + +
Sbjct: 19  DNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVND--NEQKMKLEAFLQRLLFPEIQ 76

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            +   L    S  +S    + Q    ++ D  L ++     +     LN        T L
Sbjct: 77  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPL 135

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGN--- 175
           H+     N +             +VK L   G+N       D    + L  A  S N   
Sbjct: 136 HWLTSIANLE-------------LVKHLVKHGSN---RLYGDNMGESCLVKAVKSVNNYD 179

Query: 176 VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELK------------VLKLLINKYPDA 223
               + LL+         D    T LH       +             ++  ++ K    
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           I+   N   S  +        +I+  +     + N++N  D NG+T L++AA   +  +V
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 299

Query: 284 FTL-SRHKSVNIRAKN 298
             L        I  K+
Sbjct: 300 DALLDYGADPFIANKS 315

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.8 bits (186), Expect = 4e-15
 Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 50/239 (20%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLN-DIACF--I 101
           D  GNTPLH + +  +  +++ LV+  S      +   ++ L  A+    N D   F  +
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 102 IDKSSESLNATRLPDEL--TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL 159
           +D     L      D +  T+LH  ++        S     ++DI++  +   ++   + 
Sbjct: 187 LDYLYPCLILE---DSMNRTILHHIIITSGMT-GCSAAAKYYLDILMGWIVKKQNRPIQS 242

Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAY---KRDCNGATPLHLAAENGELKVLKLL 216
             +++              +   L+    +A     +D NG T L++AA  G + ++  L
Sbjct: 243 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA 275
           ++   D                                       + +++G   +   A
Sbjct: 303 LDYGAD-------------------------------------PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.1 bits (184), Expect = 5e-15
 Identities = 37/219 (16%), Positives = 65/219 (29%), Gaps = 9/219 (4%)

Query: 128 QNYDLSKSMQFLQFIDI--MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEA 185
           Q   L   +Q L F +I  M   L  +    N           + +    +Q V      
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 186 SK-QLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN- 243
           ++  L    D +G TPLH       L+++K L+    +     DN   S L  A K  N 
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNN 177

Query: 244 --WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 301
                   +L    +   + L D    T LH   +          +++    +       
Sbjct: 178 YDSGTFEALLDY--LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 302 RNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSA 340
           +N           +   +         L+    K  ++ 
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.5 bits (167), Expect = 7e-13
 Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 42/221 (19%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH-- 60
            TPLH    I +  +V  ++K        G ++ L       D  G + L   V   +  
Sbjct: 132 NTPLHWLTSIANLELVKHLVK-------HG-SNRLY-----GDNMGESCLVKAVKSVNNY 178

Query: 61  -KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVR-----------LNDIACFIIDKSSES 108
                  L++         +   +T L   I                DI    I K    
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238

Query: 109 LNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLH 168
              +   ++ +  +     +   + +++     I           +++N  D +    L+
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWII----------ANMLNAQDSNGDTCLN 288

Query: 169 YAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAEN 207
            AA  GN+ +V  LL+  A     +  + +G  P+   A  
Sbjct: 289 IAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGAGL 326

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.2 bits (238), Expect = 1e-22
 Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 41/236 (17%)

Query: 44  RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIID 103
            D  G T LH           + L+E   A ++  +   +TPL  A+      +   +I 
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIR 79

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLD 160
             +  L+A R+ D  T L                       M++ L     +   +N +D
Sbjct: 80  NRATDLDA-RMHDGTTPLILAARLAVEG-------------MLEDLINSHAD---VNAVD 122

Query: 161 WHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
              ++ LH+AAA  NV     LL+  A+K     ++    TPL LAA  G  +  K+L++
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREGSYETAKVLLD 179

Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRN--GNTSLH 272
            + +  +I D+ DR    +A +  + +IV              L + N   +  LH
Sbjct: 180 HFAN-RDITDHMDRLPRDIAQERMHHDIVRL------------LDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 94.4 bits (236), Expect = 3e-22
 Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELK 211
            L N+ D      LH AA        +RLLE  A       +D  G TPLH A       
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQG 72

Query: 212 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTS 270
           V ++LI      ++ R +   + L +AA+     ++   I    +    +N +D  G ++
Sbjct: 73  VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSA 128

Query: 271 LHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
           LH AA   + D    L ++   N   +N 
Sbjct: 129 LHWAAAVNNVDAAVVLLKNG-ANKDMQNN 156

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.4 bits (158), Expect = 6e-12
 Identities = 35/223 (15%), Positives = 61/223 (27%), Gaps = 74/223 (33%)

Query: 3   ETPLHIAARIGDHAIVSE-IMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
            TPLH A       +    I      ++              R  +G TPL        +
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDA-------------RMHDGTTPLILAARLAVE 105

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            ++  L+       + +N                       D               + L
Sbjct: 106 GMLEDLINSH----ADVNAV---------------------DD-----------LGKSAL 129

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQM 178
           H+     N D                +L   G N    +  +  +  PL  AA  G+ + 
Sbjct: 130 HWAAAVNNVD-------------AAVVLLKNGAN---KDMQNNREETPLFLAAREGSYET 173

Query: 179 VQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
            + LL+  A++      D     P  +A E     +++LL   
Sbjct: 174 AKVLLDHFANR---DITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 41.2 bits (98), Expect = 4e-04
 Identities = 29/206 (14%), Positives = 51/206 (24%), Gaps = 82/206 (39%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            TPL +AAR+    ++ +++     VN               D  G + LH      +  
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADVNA-------------VDDLGKSALHWAAAVNNVD 139

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
              +L++  +      +                       +             E T L 
Sbjct: 140 AAVVLLKNGAN----KDMQ---------------------NN-----------REETPLF 163

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
                 +Y+               K+L     N    +  D   R P   A    +  +V
Sbjct: 164 LAAREGSYE-------------TAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIV 207

Query: 180 QRLLEASKQLAYKRDCNGA---TPLH 202
           + L E                   LH
Sbjct: 208 RLLDE-----------YNLVRSPQLH 222

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 90.2 bits (225), Expect = 9e-22
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 11/131 (8%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
           I+ L       L  AAA G V+ V++LLE  A        +  G  P+ +    G  +V 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMM-MGSAQVA 60

Query: 214 KLLINKYPDAIEIRDNSDRSI-LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272
           +LL+    +     D +  +  +H AA+ G  + +  +         +++ D  G   + 
Sbjct: 61  ELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLH---RAGARLDVCDAWGRLPVD 116

Query: 273 LAAMGLHSDVV 283
           LA    H D+ 
Sbjct: 117 LAEEQGHRDIA 127

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.8 bits (172), Expect = 1e-14
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 192 KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 251
               +    L  AA  G+++ ++ L+    D     +   R  + V    G+  +   +L
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLL 64

Query: 252 KSPEMEN--LINLIDRNGNTS-LHLAAMGLHSDVVFTLSRHK-SVNIRAKN 298
                 +    N  D    T  +H AA     D +  L R    +++    
Sbjct: 65  -----LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW 110

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT-PL 201
            V+ L       N L+   R P+      G+ Q+ + LL   A        D    T P+
Sbjct: 27  TVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN---CADPATLTRPV 82

Query: 202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           H AA  G L  L +L       +++ D   R  + +A + G+ +I  ++  
Sbjct: 83  HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 24/178 (13%), Positives = 46/178 (25%), Gaps = 54/178 (30%)

Query: 44  RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIID 103
                +  L     +     +R L+E   A  + +N+  + P+ + +      +A  ++ 
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMMGSA-QVAELLLL 65

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
                                                         G   +  +      
Sbjct: 66  H---------------------------------------------GAEPNCADPATL-- 78

Query: 164 RNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
             P+H AA  G +  +  L    A        D  G  P+ LA E G   + + L   
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 91.7 bits (229), Expect = 1e-21
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKV 212
           L N  D + R PL  A   G    + +L+E     +    +D  G+T L  A +N  L +
Sbjct: 27  LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE---DKDIEGSTALIWAVKNNRLGI 83

Query: 213 LKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSL 271
            + L++K  + +  +D S ++ L  +   G   +  F +         +N  +  G T L
Sbjct: 84  AEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN----VNDRNLEGETPL 138

Query: 272 HLAAMGLHSDVVFTLSRHKSVNIRAKN 298
            +A+    S++V  L      +I A++
Sbjct: 139 IVASKYGRSEIVKKLLELG-ADISARD 164

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.8 bits (219), Expect = 3e-20
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 38/214 (17%)

Query: 76  SYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKS 135
           S+++K  +    I  +  +N    F+ +               T L    M    +    
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDS--------YNRTPLMVACMLGMEN---- 49

Query: 136 MQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLA 190
                     +  L         +   D      L +A  +  + + ++LL   ++    
Sbjct: 50  ---------AIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV--- 94

Query: 191 YKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF- 249
             +D +G TPL  +   G  ++   L+    + +  R+    + L VA+K+G   IV   
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 250 ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           +    +    I+  D  G T+   A +    +V+
Sbjct: 154 LELGAD----ISARDLTGLTAEASARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 44/223 (19%), Positives = 67/223 (30%), Gaps = 52/223 (23%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           E    I      +  +                   + L   RD    TPL        + 
Sbjct: 9   EIVEKIKDEKSINQNL-------------------DFLRNYRDSYNRTPLMVACMLGMEN 49

Query: 63  VIRILVEKDSAPSSYINKAY---QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT 119
            I  LVE        +        T L  A+      IA  ++ K S  +N        T
Sbjct: 50  AIDKLVENFD----KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDF-SGKT 103

Query: 120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNV 176
            L + ++    +             M   L   G N   +N  +     PL  A+  G  
Sbjct: 104 PLMWSIIFGYSE-------------MSYFLLEHGAN---VNDRNLEGETPLIVASKYGRS 147

Query: 177 QMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
           ++V++LLE  A       RD  G T    A   G  +V+K+  
Sbjct: 148 EIVKKLLELGADIS---ARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 7e-12
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILK 252
           D NG     +  E    + L  L N        RD+ +R+ L VA   G  N +   +  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 253 SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
             +    +   D  G+T+L  A       +   L      N+  K+
Sbjct: 58  FDK----LEDKDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKD 98

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 89.3 bits (223), Expect = 1e-21
 Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 9/120 (7%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           PLH AA +G++++V+ LLE  A       +D NG TPLHLAA NG L+V+KLL+    D 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           +  +D + R+ LH+AA++G+  +V  +L     +  +N  D+NG T LHLAA   H +VV
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGAD--VNAKDKNGRTPLHLAARNGHLEVV 117

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 77.4 bits (192), Expect = 3e-17
 Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 12/113 (10%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
           +VK+L   G +   +N  D + R PLH AA +G++++V+ LLE  A       +D NG T
Sbjct: 17  VVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRT 70

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           PLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G+  +V  +L+
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.0 bits (178), Expect = 2e-15
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 5/103 (4%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
           NG TPLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56

Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
               +N  D+NG T LHLAA   H +VV  L      ++ AK+
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKD 98

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.4 bits (148), Expect = 2e-11
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 11/80 (13%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
           +VK+L   G +   +N  D + R PLH AA +G++++V+ LLE  A       +D NG T
Sbjct: 50  VVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRT 103

Query: 200 PLHLAAENGELKVLKLLINK 219
           PLHLAA NG L+V+KLL+  
Sbjct: 104 PLHLAARNGHLEVVKLLLEA 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 90.1 bits (225), Expect = 2e-21
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 17/145 (11%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            V+IL   G +   +N  D     PLH AA +G++++V+ LL+  A        D  G T
Sbjct: 29  EVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV---NAVDHAGMT 82

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMEN 258
           PL LAA  G L+++++L+    D +   D    + LH+AA  G+  IV   +    +   
Sbjct: 83  PLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD--- 138

Query: 259 LINLIDRNGNTSLHLAAMGLHSDVV 283
            +N  D+ G T+  ++    + D+ 
Sbjct: 139 -VNAQDKFGKTAFDISIDNGNEDLA 162

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.0 bits (217), Expect = 3e-20
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 22/141 (15%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
            L  AA +G    V+ L+   A        D +G TPLHLAA NG L+++++L+    D 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVN---AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD- 72

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMG 277
           +   D++  + L +AA  G+  IV         E L+      N  D  G+T LHLAAM 
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIV---------EVLLKNGADVNANDMEGHTPLHLAAMF 123

Query: 278 LHSDVVFTLSRHKSVNIRAKN 298
            H ++V  L ++   ++ A++
Sbjct: 124 GHLEIVEVLLKNG-ADVNAQD 143

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 74.3 bits (184), Expect = 8e-16
 Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 12/113 (10%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
           +V++L   G +   +N +D     PL  AA  G++++V+ LL+  A        D  G T
Sbjct: 62  IVEVLLKNGAD---VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN---ANDMEGHT 115

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           PLHLAA  G L+++++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILK 252
             +    L  AA  G    +++L+    D +   D S  + LH+AA +G+  IV   +  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 253 SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
             +    +N +D  G T L LAA+  H ++V  L ++   ++ A +
Sbjct: 70  GAD----VNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNAND 110

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.8 bits (162), Expect = 7e-13
 Identities = 42/221 (19%), Positives = 69/221 (31%), Gaps = 73/221 (33%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
             L  AAR G    V  +M     VN               D  G TPLH      H  +
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADVNA-------------EDASGWTPLHLAAFNGHLEI 62

Query: 64  IRILVEKDSAPSSYINKAY---QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120
           + +L++      + +N       TPL +A      +I   ++                  
Sbjct: 63  VEVLLKNG----ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------------- 102

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQ 180
                                        G +   +N  D     PLH AA  G++++V+
Sbjct: 103 -----------------------------GAD---VNANDMEGHTPLHLAAMFGHLEIVE 130

Query: 181 RLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
            LL+  A       +D  G T   ++ +NG   + ++L   
Sbjct: 131 VLLKNGADVN---AQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.5 bits (223), Expect = 3e-21
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 164 RNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221
            + L  AAA G V+ V+ LLE  A+       +  G  P+ +    G  +V +LL+    
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM-MGSARVAELLLLHGA 68

Query: 222 DAIEIRDNSDRSI-LHVAAKHGNWNIVSFILKSPEMEN--LINLIDRNGNTSLHLAAMGL 278
           +     D +  +  +H AA+ G  + +  +           +++ D  G   + LA    
Sbjct: 69  E-PNCADPATLTRPVHDAAREGFLDTLVVLH-----RAGARLDVRDAWGRLPVDLAEELG 122

Query: 279 HSDVV-FTLSRHKSVNIRAKNRSARNNTTLEIDE 311
           H DV  +  +           R        +I +
Sbjct: 123 HRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT-PL 201
            V+ L       N  + + R P+      G+ ++ + LL   A        D    T P+
Sbjct: 27  EVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPN---CADPATLTRPV 82

Query: 202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
           H AA  G L  L +L       +++RD   R  + +A + G+ ++  ++           
Sbjct: 83  HDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA--------A 133

Query: 262 LIDRNGNTSLHLAAMGLHSDVV 283
                G+    + A    SD+ 
Sbjct: 134 AGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 65.6 bits (161), Expect = 6e-13
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 13/108 (12%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK--- 252
             A  L  AA  G ++ ++ L+    +     ++  R  + V    G+  +   +L    
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLLLHGA 68

Query: 253 SPEMENLINLIDRNGNTS-LHLAAMGLHSDVVFTLSRHK-SVNIRAKN 298
                   N  D    T  +H AA     D +  L R    +++R   
Sbjct: 69  E------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW 110

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 53.6 bits (130), Expect = 9e-09
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 28/169 (16%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSS 106
                L     +     +R L+E  + P++  N   + P+ + +      +A  ++   +
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMMMGSA-RVAELLLLHGA 68

Query: 107 ESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQ 163
           E  N          +H        D              + +L   G     ++  D   
Sbjct: 69  E-PNCADPATLTRPVHDAAREGFLD-------------TLVVLHRAGAR---LDVRDAWG 111

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKV 212
           R P+  A   G+  + + L  A+          G+    + A  G   +
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAA---G---GTRGSNHARIDAAEGPSDI 154

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 91.1 bits (227), Expect = 6e-21
 Identities = 46/286 (16%), Positives = 79/286 (27%), Gaps = 86/286 (30%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
           EG           H            D      +   Y+TP   A   R  D        
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAAD------VVSEYETPWWTA--ARKADEQA----- 60

Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL--GTNKDLINRLDWH 162
                                                    +  L    +   ++ +D +
Sbjct: 61  -----------------------------------------LSQLLEDRD---VDAVDEN 76

Query: 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
            R  L + A  G+ + V+ L EA   L ++    G T LH+AA     +V++ L+    D
Sbjct: 77  GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136

Query: 223 AIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLI---------------- 263
            IE+ D    + L +A +          ++      +E +IN++                
Sbjct: 137 -IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195

Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEI 309
              G    +L       D  +    H +    AK+        LE 
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVA-EDVAKD----YEDGLEY 236

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 28/276 (10%), Positives = 72/276 (26%), Gaps = 58/276 (21%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPA-VNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
               I  + G          Y+ A V                  E  TP      K  ++
Sbjct: 17  MEYLIEWKDGHSPSW-VPSSYIAADVVS----------------EYETPWWTAARKADEQ 59

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
            +  L+E        +++  +T L     +  +     + +  ++ L+   +   LT LH
Sbjct: 60  ALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALH 116

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
                   +             +V+ L   G +   I   D      L  A         
Sbjct: 117 MAAGYVRPE-------------VVEALVELGAD---IEVEDERGLTALELAREILKTTPK 160

Query: 180 QRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239
              ++  +++  +        +         +V +++          +    + + ++  
Sbjct: 161 GNPMQFGRRIGLE----KVINVLEGQVFEYAEVDEIV---------EKRGKGKDVEYLVR 207

Query: 240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA 275
                +            ++   + ++    L  A 
Sbjct: 208 WKDGGDCEWVKGV-----HVAEDVAKDYEDGLEYAV 238

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
           E +K +  +    GA    +  ++G             D      +   +    AA+  +
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKAD 57

Query: 244 WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
              +S +L+  +    ++ +D NG T+L   A       V  L+     ++  ++ 
Sbjct: 58  EQALSQLLEDRD----VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDM 108

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 31/243 (12%), Positives = 60/243 (24%), Gaps = 48/243 (19%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
            ETP   AAR  D   +S++++            V        D  G T L  V      
Sbjct: 45  YETPWWTAARKADEQALSQLLE---------DRDVDA-----VDENGRTALLFVAGLGSD 90

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE--LT 119
           + +R+L E  +       +   T L +A      ++   +++  ++ +      DE  LT
Sbjct: 91  KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVE---DERGLT 146

Query: 120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
            L                                  I          +         ++ 
Sbjct: 147 ALELAREILKTT-------------PKGNPMQFGRRIGLEKVI---NVLEGQVFEYAEVD 190

Query: 180 QRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239
           + + +            G    +L           +      +    +D      L  A 
Sbjct: 191 EIVEK---------RGKGKDVEYLVRWKDGGDCEWVKGVHVAE-DVAKDY--EDGLEYAV 238

Query: 240 KHG 242
              
Sbjct: 239 AES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 22/217 (10%), Positives = 50/217 (23%), Gaps = 60/217 (27%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIE-GNTPLHNVVTKKHK 61
            T L   A +G    V  + +    ++              RD+  G T LH        
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEAGADLDH-------------RDMRGGLTALHMAAGYVRP 124

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            V+  LVE  +      ++   T L +A ++         +      +       ++  +
Sbjct: 125 EVVEALVELGADIEV-EDERGLTALELAREILKTTPKGNPMQFGRR-IGLE----KVINV 178

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
               + +  ++ +                     I       ++  +             
Sbjct: 179 LEGQVFEYAEVDE---------------------IVEKRGKGKDVEYLVRWKDGGDCEWV 217

Query: 182 LLEASKQLAYKRDCNGA--------TPLHLAAENGEL 210
                         + A          L  A     +
Sbjct: 218 KGV-----------HVAEDVAKDYEDGLEYAVAESVI 243

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 89.0 bits (222), Expect = 6e-21
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 22/143 (15%)

Query: 164 RNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221
            N L  AAA G+++ +  LL+   +      ++  G T L +    G  ++ + L+ +  
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQVMK-LGNPEIARRLLLRGA 61

Query: 222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAA 275
           +  +++D +  +++H AA+ G  + +         + L+      N+ D  GN  LHLAA
Sbjct: 62  N-PDLKDRTGFAVIHDAARAGFLDTL---------QTLLEFQADVNIEDNEGNLPLHLAA 111

Query: 276 MGLHSDVVFTLSRHKSVNIRAKN 298
              H  VV  L +H + N+  +N
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRN 134

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.2 bits (220), Expect = 9e-21
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 15/144 (10%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            +  L     N   +N  +   R  L      GN ++ +RLL   A+      +D  G  
Sbjct: 20  QLTSLLQNNVN---VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD---LKDRTGFA 72

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
            +H AA  G L  L+ L+    D + I DN     LH+AAK G+  +V F++      N 
Sbjct: 73  VIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV-KHTASN- 129

Query: 260 INLIDRNGNTSLHLAAMGLHSDVV 283
           +   +  G+T+  LA +   ++VV
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVV 153

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
           + + L   G N    +  D      +H AA +G +  +Q LLE  A        D  G  
Sbjct: 52  IARRLLLRGAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN---IEDNEGNL 105

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           PLHLAA+ G L+V++ L+      +  R++   +   +A  +G   +VS +  
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 254
                L  AA  G+L+ L  L+    + +  ++   R+ L V    GN  I    +L+  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGA 61

Query: 255 EMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
                 +L DR G   +H AA     D + TL   +  ++  ++
Sbjct: 62  N----PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIED 100

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 63.9 bits (157), Expect = 3e-12
 Identities = 29/178 (16%), Positives = 64/178 (35%), Gaps = 27/178 (15%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLN--DIACFIIDK 104
                L +   +     +  L++ +    +  N   +T L +    +L   +IA  ++ +
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVM---KLGNPEIARRLLLR 59

Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDW 161
            +   +  +      ++H        D              ++ L     +   +N  D 
Sbjct: 60  GAN-PDL-KDRTGFAVIHDAARAGFLD-------------TLQTLLEFQAD---VNIEDN 101

Query: 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
               PLH AA  G++++V+ L++ +      R+  G T   LA   G  +V+ L+   
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
              +H AAR G    +  ++++   VN               D EGN PLH    + H R
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNI-------------EDNEGNLPLHLAAKEGHLR 117

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIA 89
           V+  LV+  ++   + N    T   +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.8 bits (219), Expect = 1e-20
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 31/158 (19%)

Query: 145 MVKIL----GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGA 198
            VK L      N      ++  Q  PLH+AA    V +V+ LL+  A       +D  G 
Sbjct: 23  TVKKLCTVQSVN---CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH---AKDKGGL 76

Query: 199 TPLHLAAENGELKVLKLLINKYPDA-IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
            PLH A   G  +V +LL+     A + + D    + LH AA  G + I          +
Sbjct: 77  VPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEIC---------K 125

Query: 258 NLI------NLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
            L+         +R+GNT L L   G  +D+   L   
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDLVKDG-DTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 17/140 (12%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            L  AA +G+V+ V++L           +   +TPLH AA    + V++ L+    D + 
Sbjct: 11  QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VH 69

Query: 226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMGLH 279
            +D      LH A  +G++ +          E L+      N+ D    T LH AA    
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVA---------ELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

Query: 280 SDVVFTLSRHKSVNIRAKNR 299
            ++   L +H   +   KNR
Sbjct: 121 YEICKLLLQHG-ADPTKKNR 139

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
                L  AA+ G+++ +K L           +    + LH AA +   ++V        
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-------- 58

Query: 256 MENLI------NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
            E L+      +  D+ G   LH A    H +V   L +H    +   +
Sbjct: 59  -EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVAD 105

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 62.8 bits (154), Expect = 8e-12
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 31/182 (17%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
           + E +  L           ++ L    S     I     TPL  A       +  +++  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 105 SSESLNATRLPDE--LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRL 159
            ++ ++A    D+  L  LH      +Y+             + ++L   G     +N  
Sbjct: 65  GAD-VHAK---DKGGLVPLHNACSYGHYE-------------VAELLVKHGAV---VNVA 104

Query: 160 DWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
           D  +  PLH AAA G  ++ + LL+  A      K++ +G TPL L   +G+  +  LL 
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVK-DGDTDIQDLLR 160

Query: 218 NK 219
             
Sbjct: 161 GD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 228 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS 287
           ++     L  AAK G+   V  +  + +  N    I+   +T LH AA      VV  L 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLC-TVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 288 RHKSVNIRAKN 298
           +H   ++ AK+
Sbjct: 63  QHG-ADVHAKD 72

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.7 bits (216), Expect = 1e-20
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 21/128 (16%)

Query: 164 RNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221
                +A  +G++  V+  +          +    G  PLH AA+ G+L++L+ L+ K  
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAA 275
           D I   D    + L  A   G+ + V           L+       +   +G T+     
Sbjct: 65  D-INAPDKHHITPLLSAVYEGHVSCVKL---------LLSKGADKTVKGPDGLTAFEATD 114

Query: 276 MGLHSDVV 283
                 ++
Sbjct: 115 NQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            VK     G +   +NR     R PLHYAA  G +++++ LL   A        D +  T
Sbjct: 22  EVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN---APDKHHIT 75

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 247
           PL  A   G +  +KLL++K  D   ++     +            ++
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.0 bits (178), Expect = 2e-15
 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
                   A +NG+L  +K  + K  D +       R  LH AA  G   I+ F+L    
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK-- 62

Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVV 283
               IN  D++  T L  A    H   V
Sbjct: 63  -GADINAPDKHHITPLLSAVYEGHVSCV 89

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 146 VKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATP 200
           ++ L   G +   IN  D H   PL  A   G+V  V+ LL   A K     +  +G T 
Sbjct: 56  LEFLLLKGAD---INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT---VKGPDGLTA 109

Query: 201 LHLAAENGELKVLK 214
                      +L+
Sbjct: 110 FEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 20/90 (22%)

Query: 3  ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
          +     A + GD   V + +     VN+                 G  PLH         
Sbjct: 8  DKEFMWALKNGDLDEVKDYVAKGEDVNR-------------TLEGGRKPLHYAADCGQLE 54

Query: 63 VIRILVEKDSAPSSYINKA---YQTPLSIA 89
          ++  L+ K     + IN     + TPL  A
Sbjct: 55 ILEFLLLKG----ADINAPDKHHITPLLSA 80

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 90.6 bits (225), Expect = 1e-20
 Identities = 46/303 (15%), Positives = 88/303 (29%), Gaps = 82/303 (27%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLH---NVVTK 58
           D   L      G    ++ +++Y+   ++  + S            G T L      +  
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYT-----EGSTGKTCLMKAVLNLQD 56

Query: 59  KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL 118
                I  L++ D    +             ++ +  D       +  +  +A       
Sbjct: 57  GVNACIMPLLQIDKDSGN---------PKPLVNAQCTD-------EFYQGHSA------- 93

Query: 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRN---------- 165
             LH  + +++                VK+L   G +  L     + Q++          
Sbjct: 94  --LHIAIEKRSLQ-------------CVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAY--KRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           PL  AA +    +V  LLE   Q A     D  G T LH                     
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA--------------- 183

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
               ++ + S L +    G   + + +        L  + +  G T L LAA     ++ 
Sbjct: 184 ---DNSPENSALVIHMYDGLLQMGARLC---PTVQLEEISNHQGLTPLKLAAKEGKIEIF 237

Query: 284 FTL 286
             +
Sbjct: 238 RHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 49/233 (21%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYV--PAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
           +T L  A  +     V+  +  +     +      ++         +G++ LH  + K+ 
Sbjct: 44  KTCLMKAV-LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102

Query: 61  KRVIRILVEK------------DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE- 107
            + +++LVE                         + PLS+A   +  D+  ++++   + 
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162

Query: 108 -SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNP 166
            SL AT      T+LH  V                              +   +  + + 
Sbjct: 163 ASLEATDS-LGNTVLHALV------------------------------MIADNSPENSA 191

Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
           L      G +QM  RL    +      +  G TPL LAA+ G++++ + ++ +
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEE-ISNHQGLTPLKLAAKEGKIEIFRHILQR 243

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            L  AA +G    V+ L+  +    +  D  G +PLHLAA+ G     ++L+       +
Sbjct: 5   KLLEAARAGQDDEVRILM--ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RD 61

Query: 226 IRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVF 284
            R   DR+ LH+AA  G+ NIV   +    +    +N  D    T+LH A    H +VV 
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVVE 117

Query: 285 TLSRHKSVNIRAKN 298
            L ++   ++  ++
Sbjct: 118 LLIKYG-ADVHTQS 130

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 85.5 bits (213), Expect = 6e-20
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 20/146 (13%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            V+IL   G         DW   +PLH AA  G+    + LL    S+     R     T
Sbjct: 17  EVRILMANGAP---FTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---ARTKVDRT 69

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN- 258
           PLH+AA  G   ++++L+    D +  +D    + LH A +H +  +V  ++K       
Sbjct: 70  PLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK-----YG 123

Query: 259 -LINLIDRNGNTSLHLAAMGLHSDVV 283
             ++   +   T+  ++    + D+ 
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.7 bits (185), Expect = 4e-16
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 60/205 (29%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY--QTPLSIAIDVRLNDIACFIIDK 104
           +    L           +RIL+    AP       +   +PL +A           ++  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG-AP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
                                                        G +    +      R
Sbjct: 57  ---------------------------------------------GVS---RDARTKVDR 68

Query: 165 NPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
            PLH AA+ G+  +V+ LL+  A       +D    T LH A E+   +V++LLI    D
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125

Query: 223 AIEIRDNSDRSILHVAAKHGNWNIV 247
            +  +    ++   ++  +GN ++ 
Sbjct: 126 -VHTQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.5 bits (161), Expect = 6e-13
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 254
           +    L  AA  G+   +++L+     A    D    S LH+AA++G+++     +    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 255 EMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
                 +   +   T LH+AA   H+++V  L +H   ++ AK+
Sbjct: 59  S----RDARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKD 97

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 36/216 (16%), Positives = 61/216 (28%), Gaps = 68/216 (31%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
              L  AAR G    V  +M                      D  G +PLH      H  
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--------------DWLGTSPLHLAAQYGHFS 48

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
              +L+           K  +TPL +A      +I                   E+ L H
Sbjct: 49  TTEVLLRAG-VSRDARTKVDRTPLHMAASEGHANIV------------------EVLLKH 89

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                                      G +   +N  D  +   LH+A    + ++V+ L
Sbjct: 90  ---------------------------GAD---VNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 183 LE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
           ++  A       +     T   ++ +NG   + ++L
Sbjct: 120 IKYGADVH---TQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D TPLH+AA  G   IV  ++K+   VN              +D+   T LH      H+
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNA-------------KDMLKMTALHWATEHNHQ 113

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAID 91
            V+ +L++   A     +K  +T   I+ID
Sbjct: 114 EVVELLIKYG-ADVHTQSKFCKTAFDISID 142

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 88.8 bits (221), Expect = 3e-20
 Identities = 33/239 (13%), Positives = 69/239 (28%), Gaps = 68/239 (28%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
           +I G   L        ++     +                     + V+ N         
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG------------------MRVKFNP-------- 35

Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDW 161
                        L LL    +   +D             +V+ +     +    +  + 
Sbjct: 36  -----------LPLALLLDSSLEGEFD-------------LVQRIIYEVDD---PSLPND 68

Query: 162 HQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
                LH A  +G+ ++V+ L++   +       D +G TPLH AA    ++V K L+  
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVES 125

Query: 220 YPDAIEIRDNSD---RSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA 275
               +     SD    +      + G      F+      E  + ++++    +L    
Sbjct: 126 GAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG--VQEK-MGIMNKGVIYALWDYE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            L     +   +     +    ++  K +      L  ++  GE  +++ +I +  D   
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDD-PS 64

Query: 226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMGLH 279
           + ++   + LH A   G+  IV         + L+      N  D +G T LH AA   +
Sbjct: 65  LPNDEGITALHNAVCAGHTEIV---------KFLVQFGVNVNAADSDGWTPLHCAASCNN 115

Query: 280 SDVVFTLSRHKSVNIRAKNRS 300
             V   L       + A   S
Sbjct: 116 VQVCKFLVESG-AAVFAMTYS 135

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 27/166 (16%), Positives = 54/166 (32%), Gaps = 12/166 (7%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
            L  ++  G   +VQR++            +  G T LH A   G  +++K L+    + 
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDPS---LPNDEGITALHNAVCAGHTEIVKFLVQFGVN- 95

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           +   D+   + LH AA   N  +  F+++S      +   D              ++   
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155

Query: 284 -FTLSRHKSVNIRAKNR-----SARNNTTLEIDEMTRADVTEVQKH 323
            F     + + I  K               E+       +T + + 
Sbjct: 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHRE 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
           +  G   L         K     I          +    ++L  ++  G +++V  I+  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY- 58

Query: 254 PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
            E+++  +L +  G T+LH A    H+++V  L +   VN+ A +
Sbjct: 59  -EVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAAD 100

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 36/246 (14%), Positives = 66/246 (26%), Gaps = 40/246 (16%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           +  L    R       SE + +   V                +      L +   +    
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVK--------------FNPLPLALLLDSSLEGEFD 51

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           +++ ++ +   PS   N    T L  A+     +I  F++      +NA    D  T LH
Sbjct: 52  LVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADS-DGWTPLH 108

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
                 N               + K L   G     +   D             G  Q  
Sbjct: 109 CAASCNNVQ-------------VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155

Query: 180 QRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI--RDNSDRSILHV 237
           Q L    +++    +      L       + ++      K  D + I  R++ D      
Sbjct: 156 QFLYGVQEKMGIM-NKGVIYALWDYEPQNDDELPM----KEGDCMTIIHREDEDEIEWWW 210

Query: 238 AAKHGN 243
           A  +  
Sbjct: 211 ARLNDK 216

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.4 bits (215), Expect = 6e-20
 Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 13/125 (10%)

Query: 166 PLHYAAASGNVQMVQRLLE-ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAI 224
           P   AA   + Q + +LLE          D NG T L   A  G  K ++LL     D +
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-L 102

Query: 225 EIRDNSD-RSILHVAAKHGNWNIVSFILKSPEMEN--LINLIDRNGNTSLHLAAMGLHSD 281
           + RD     + LH+AA +    +V  ++     E    I + D  G T+L LA   L + 
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREILKTT 157

Query: 282 VVFTL 286
                
Sbjct: 158 PKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 58/208 (27%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
           EG           H            D      +   Y+TP   A   R  D        
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD------VVSEYETPWWTA--ARKADEQA----- 59

Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
                          LL                              +   ++ +D + R
Sbjct: 60  -------LSQ-----LLE---------------------------DRD---VDAVDENGR 77

Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAI 224
             L + A  G+ + V+ L EA   L ++    G T LH+AA     +V++ L+    D I
Sbjct: 78  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-I 136

Query: 225 EIRDNSDRSILHVAAKHGNWNIVSFILK 252
           E+ D    + L +A +          ++
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 17/151 (11%)

Query: 152 NKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELK 211
           NK + +R               G+          +  +         TP   AA   + +
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQ 58

Query: 212 VLKLLINKYPDA-IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN--LINLID-RNG 267
            L  L+    D  ++  D + R+ L   A  G+   V  +      E    ++  D R G
Sbjct: 59  ALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-----EAGADLDHRDMRGG 110

Query: 268 NTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
            T+LH+AA  +  +VV  L      +I  ++
Sbjct: 111 LTALHMAAGYVRPEVVEALVELG-ADIEVED 140

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
           E +K +  +    GA    +  ++G             D      +   +    AA+  +
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKAD 56

Query: 244 WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
              +S +L+  +    ++ +D NG T+L   A       V  L+     ++  ++ 
Sbjct: 57  EQALSQLLEDRD----VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDM 107

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 30/226 (13%), Positives = 54/226 (23%), Gaps = 70/226 (30%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPA-VNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
               I  + G          Y+ A V                  E  TP      K  ++
Sbjct: 16  MEYLIEWKDGHSPSW-VPSSYIAADVVS----------------EYETPWWTAARKADEQ 58

Query: 63  VIRILV------EKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
            +  L+        D        +  +T L     +  +     + +  ++ L+   +  
Sbjct: 59  ALSQLLEDRDVDAVD--------ENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRG 109

Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLDWHQRNPLHYAAAS 173
            LT LH        +             +V+ L   G +   I   D      L  A   
Sbjct: 110 GLTALHMAAGYVRPE-------------VVEALVELGAD---IEVEDERGLTALELAREI 153

Query: 174 GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
                                     P+      G  KV+ +L  +
Sbjct: 154 LKTTPKG------------------NPMQFGRRIGLEKVINVLEGQ 181

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 85.7 bits (213), Expect = 3e-19
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 15/147 (10%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD--- 222
           PL  AA   +VQ + +LL+      ++R   G T LH+AA    L+   +L+   P+   
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 223 -AIEIRDNSDRSILHVAAKHGNWNIVSFIL----------KSPEMENLINLIDRNGNTSL 271
             +       ++ LH+A  + N N+V  +L                   + +   G   L
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 272 HLAAMGLHSDVVFTLSRHKSVNIRAKN 298
             AA     ++V  L  H   +IRA++
Sbjct: 126 SFAACVGSEEIVRLLIEHG-ADIRAQD 151

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 83.4 bits (207), Expect = 2e-18
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%)

Query: 142 IDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEA----SKQLAYKRDCNG 197
           +  + K+L      +++        LH AA   N++    L+EA      +        G
Sbjct: 16  VQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG 75

Query: 198 ATPLHLAAENGELKVLKLLINK------------YPDAIEIRDNSDRSILHVAAKHGNWN 245
            T LH+A  N  + +++ L+ +            +              L  AA  G+  
Sbjct: 76  QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135

Query: 246 IVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR---HKSVNIRAKNRSA 301
           IV   I    +    I   D  GNT LH+  +  +      +             K+   
Sbjct: 136 IVRLLIEHGAD----IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191

Query: 302 RNN 304
             N
Sbjct: 192 VPN 194

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 70.3 bits (173), Expect = 6e-14
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 197 GATPLHLAAENGELKVL-KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 254
             +PL LAA+  +++ L KLL  +  + +  R     + LH+AA + N       +  +P
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 255 E-MENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK-SVNIRAKNRSARNNTTLEIDE 311
           E +   +      G T+LH+A +  + ++V  L     SV+ RA            I  
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 80.9 bits (201), Expect = 2e-18
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
            L  AA +G    V+ L+   A       +D  G TPL+LA  +G L+++++L+    D 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD- 72

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDV 282
           +   D    + LH+AA  G+  I    +    +    +N  D+ G T+  ++    + D+
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD----VNAQDKFGKTAFDISIGNGNEDL 128

Query: 283 V 283
            
Sbjct: 129 A 129

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 70.5 bits (174), Expect = 7e-15
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 12/113 (10%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            V+IL   G +   +N  D +   PL+ A A G++++V+ LL+  A        D  G T
Sbjct: 29  EVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN---AVDAIGFT 82

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           PLHLAA  G L++ ++L+    D +  +D   ++   ++  +GN ++   + K
Sbjct: 83  PLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.4 bits (166), Expect = 9e-14
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 254
           +    L  AA  G+   +++L+    D +  +D    + L++A  HG+  IV   +    
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 255 EMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299
           +    +N +D  G T LHLAA   H ++   L +H   ++ A+++
Sbjct: 72  D----VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDK 111

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.2 bits (129), Expect = 7e-09
 Identities = 28/172 (16%), Positives = 52/172 (30%), Gaps = 54/172 (31%)

Query: 48  GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE 107
               L           +RIL+    A  +  ++   TPL +A      +I   ++     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--- 69

Query: 108 SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPL 167
                                                     G +   +N +D     PL
Sbjct: 70  ------------------------------------------GAD---VNAVDAIGFTPL 84

Query: 168 HYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
           H AA  G++++ + LL+  A       +D  G T   ++  NG   + ++L 
Sbjct: 85  HLAAFIGHLEIAEVLLKHGADVN---AQDKFGKTAFDISIGNGNEDLAEILQ 133

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.7 bits (198), Expect = 2e-18
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           PLH AA +G+ + V++LL   A       R  +G TPLHLAA+NG  +++KLL+ K  D 
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD- 67

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSF-ILKSPEMENLINLIDRNGNTSLH 272
           +  R     +  H+A K+G+  IV     K  +    +N      +   H
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD----VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.4 bits (192), Expect = 1e-17
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 190 AYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF 249
                 +G TPLH AA+NG  + +K L++K  D +  R     + LH+AAK+G+  IV  
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 250 -ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
            + K  +    +N   ++GNT  HLA    H ++V  L      ++ A++
Sbjct: 61  LLAKGAD----VNARSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARS 105

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 6e-14
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            VK L   G +   +N        PLH AA +G+ ++V+ LL   A       R  +G T
Sbjct: 24  EVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN---ARSKDGNT 77

Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           P HLA +NG  +++KLL  K  D +  R        H
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKGAD-VNARSWGSSHHHH 113

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 31/240 (12%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           +    ++A       +   I+       +              D +  T LH   +  H 
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATR-------------TDQDSRTALHWACSAGHT 53

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
            ++  L++    P +  + A  +PL IA     ++I   ++ K +      +  +  T L
Sbjct: 54  EIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ--NGCTPL 110

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
           H+   +  ++             +  +L       +  D +    +H AAA GN++MV  
Sbjct: 111 HYAASKNRHE-------------IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
           LL         +D  G TPLHLA +   ++  K L+ +    I I +  +++ L VA   
Sbjct: 158 LLFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 82.6 bits (204), Expect = 3e-18
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
             + A +    ++ +R+L   +      + D +  T LH A   G  ++++ L+      
Sbjct: 10  ICNLAYSGKLDELKERILADKSLAT---RTDQDSRTALHWACSAGHTEIVEFLLQLGVP- 65

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           +  +D++  S LH+AA  G   IV  +L        +N +++NG T LH AA     ++ 
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGCTPLHYAASKNRHEIA 122

Query: 284 FTLSRHKSVNIRAKNRSARN 303
             L    + N  AK+     
Sbjct: 123 VMLLEGGA-NPDAKDHYDAT 141

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.1 bits (195), Expect = 6e-17
 Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 27/222 (12%)

Query: 84  TPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFID 143
              ++A   +L+++   I+   S     T   D  T LH+     + +            
Sbjct: 9   MICNLAYSGKLDELKERILADKSL-ATRTDQ-DSRTALHWACSAGHTE------------ 54

Query: 144 IMVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
            +V+ L   G     +N  D    +PLH AA++G  ++V+ LL     +    + NG TP
Sbjct: 55  -IVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTP 109

Query: 201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI 260
           LH AA     ++  +L+    +  + +D+ D + +H AA  GN  +V  +L         
Sbjct: 110 LHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---T 165

Query: 261 NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSAR 302
           N+ D  GNT LHLA      +    L    + +I  +N+  +
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIENKEEK 206

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSF-ILKSP 254
           +     +LA      ++ + ++          D   R+ LH A   G+  IV F +    
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 255 EMENLINLIDRNGNTSLHLAAM-GLHSDVVFTLSRHKSVNIRAKN 298
                +N  D  G + LH+AA  G    V   L +   VN   +N
Sbjct: 65  P----VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 32/217 (14%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            T LH A   G   IV  +++    VN              +D  G +PLH   +     
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVND-------------KDDAGWSPLHIAASAGXDE 87

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           +++ L+ K +  ++ +N+   TPL  A     ++IA  +++  +          + T +H
Sbjct: 88  IVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--YDATAMH 144

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
               + N               MV IL   K   N  D     PLH A     V+  + L
Sbjct: 145 RAAAKGNLK-------------MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
           +     + Y  +    TPL +A   G L ++   + +
Sbjct: 192 VTQGASI-YIENKEEKTPLQVAK--GGLGLILKRLAE 225

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 83.7 bits (207), Expect = 3e-18
 Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 42/201 (20%)

Query: 145 MVKILGTNKDLINRLDWHQRN----PLHYAA---ASGNVQMVQRLLEASKQLAYK----- 192
           ++  L T+K  +   ++ + +     L  A    ++G    +  LL+ +++         
Sbjct: 24  LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83

Query: 193 -----RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI------------- 234
                    G T LH+A E      ++LL+ K  D +  +                    
Sbjct: 84  SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGEL 142

Query: 235 -LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT-------- 285
            L +AA     +IV ++ ++   +  +   D  GNT LH       +    T        
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202

Query: 286 --LSRHKSVNIRAKNRSARNN 304
             L +   +       +  NN
Sbjct: 203 LLLIKCAKLFPDTNLEALLNN 223

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.9 bits (205), Expect = 5e-18
 Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 34/207 (16%)

Query: 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDL---INRLDWHQRNPLHYAAASGN 175
           T L   ++  +   + ++  L  +DI  K     + +      + +  +  LH A     
Sbjct: 48  TCLPKALLNLSAGRNDTIPIL--LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 176 VQMVQRLLE-------------ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
              V+ L+E                +        G  PL LAA   +  ++  L      
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

Query: 223 A--IEIRDNSDRSILHVAAKHGN---------WNIVSFIL----KSPEMENLINLIDRNG 267
              +  +D+   ++LH      +           +   +L    K     NL  L++ +G
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225

Query: 268 NTSLHLAAMGLHSDVVFTL-SRHKSVN 293
            + L +AA      +   +  R  +  
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 44/278 (15%), Positives = 79/278 (28%), Gaps = 66/278 (23%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLH---NVVTK 58
           +   L      G    +  ++ ++          + +  F      G T L      ++ 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFL----LTHKKRLTDEEFR-EPSTGKTCLPKALLNLSA 59

Query: 59  KHKRVIRILVE---KDSAPSSYINKAY-------QTPLSIAIDVRLNDIACFIIDK---- 104
                I IL++   K      +IN  +       QT L IAI+ R       +++K    
Sbjct: 60  GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

Query: 105 --------SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNK 153
                                   L                       +V  L   G  +
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH-------------IVHYLTENGHKQ 166

Query: 154 DLINRLDWHQRNPLHYAAASGN---------VQMVQRLLE------ASKQLAYKRDCNGA 198
             + R D      LH   A  +          +M   LL           L    + +G 
Sbjct: 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           +PL +AA+ G++ + + +I +     EI D +     H
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRR-----EIADAAAHHHHH 259

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 18/162 (11%), Positives = 49/162 (30%), Gaps = 25/162 (15%)

Query: 156 INRLDWHQRNPLHYA----AASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENG- 208
            ++    + N L+            ++   L+   A  +    R   G T      + G 
Sbjct: 31  EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK---SRTKEGTTLFFPLFQGGG 87

Query: 209 -----ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN------IVSFILKSPEME 257
                  ++ K+ + K  D I       + ++     +   +      +   I     ++
Sbjct: 88  NDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ 146

Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS-VNIRAKN 298
             + + D+ G T+L           +  +  +    N++  +
Sbjct: 147 --LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 24/196 (12%)

Query: 46  IEGNTPLHNVVTKKHKRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIID 103
           +     +              L EK  +   S   +      L    D     I+ F+I+
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL---GTNKDLINRLD 160
           K ++ + +    +  TL          D++ + +       + KI    G +   I  L 
Sbjct: 64  KGAD-IKSRT-KEGTTLFFPLFQGGGNDITGTTE-------LCKIFLEKGAD---ITALY 111

Query: 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYK------RDCNGATPLHLAAENGELKVLK 214
              +  +     +  V   + +       +        +D  G T L       +   LK
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 215 LLINKYPDAIEIRDNS 230
           ++ +       +++NS
Sbjct: 172 MMEDYIKK-YNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
             +              I  Y    +Q+G   +L      +D  G T L  V   +    
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLI-----KDKWGLTALEFVKRCQKPIA 169

Query: 64  IRILVEK 70
           ++++ + 
Sbjct: 170 LKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 9/114 (7%), Positives = 23/114 (20%), Gaps = 25/114 (21%)

Query: 3   ETPLHIAARIGDHAIVS--EIMKYVPA----VNQAGSASVLETLFGMRDIEGNTPLHNVV 56
            T      + G + I    E+ K        +                       +   +
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-------------LYKPYKIVVFKNI 122

Query: 57  TKKHK------RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
                       + +++  +        +K   T L      +       + D 
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 14/161 (8%)

Query: 146 VKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATP 200
           ++ +     +     R   +    L  AA +G +++VQ+ ++         + +  G T 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITA 57

Query: 201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI 260
           LH A       ++  LI    + +   D+   + LH AA   +  I   +++        
Sbjct: 58  LHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 261 NLIDRNGNTSLHLAAMGL--HSDVV-FTLSRHKSVNIRAKN 298
                +G T+          ++D   +     +S+ +    
Sbjct: 117 T--LSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG 155

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 14/148 (9%)

Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVL 213
            ++ +      LH A    N  +V  L+   A+       D +G TPLH AA   +  + 
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVIC 103

Query: 214 KLLINKYPDAIEIRDNSD-RSILHVAA--KHGNWNIVSFILKSPEMENLINLIDRNGNTS 270
             L+      I     SD  +        + G  +  +++      ++ + L++     +
Sbjct: 104 MALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLAD--VEQS-MGLMNSGAVYA 159

Query: 271 LHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
           L   +     ++ F     +SV +  ++
Sbjct: 160 LWDYSAEFGDELSFREG--ESVTVLRRD 185

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 13/144 (9%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL 201
           +V  L   G N   +N  D H   PLH AA+  +  +   L++    +      +GAT  
Sbjct: 69  IVDFLITAGAN---VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF 125

Query: 202 HLAA--ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
                   G       L +     + + ++     L   +            +   +   
Sbjct: 126 EKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFG--DELSFREGESVT-- 180

Query: 260 INLIDRNGNTSLHLAAMGLHSDVV 283
           +   D    T    AA+      V
Sbjct: 181 VLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 179 VQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH 236
           ++ +L    S + A +   N    L  AA  GEL+V++  + +  D     +    + LH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALH 59

Query: 237 VAAKHGNWNIVSFILKSPEMENLI------NLIDRNGNTSLHLAAMGLHSDVVFTLSRHK 290
            A    N++IV F         LI      N  D +G T LH AA    + +   L +H 
Sbjct: 60  NAICGANYSIVDF---------LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110

Query: 291 SVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
              I A   S    T  E  +  R    +   +L
Sbjct: 111 -AAIFATTLSDG-ATAFEKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 38/238 (15%), Positives = 74/238 (31%), Gaps = 36/238 (15%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
              L  AA  G+  +V + +K +   +Q              + EG T LHN +   +  
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDPSQP-------------NEEGITALHNAICGANYS 68

Query: 63  VIRILVEKDSAPSSYINKAY---QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT 119
           ++  L+   +     +N       TPL  A       I   ++   +  + AT L D  T
Sbjct: 69  IVDFLITAGA----NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGAT 123

Query: 120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMV 179
                   +                    L   +  +  ++      L   +A    ++ 
Sbjct: 124 AFEKCDPYREGYAD-----------CATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL- 171

Query: 180 QRLLEASKQLAYKRDCNGATPLHLAAENGELK-VLKLLINKYPDAIEIRDNSDRSILH 236
               E       +RD    T    AA +G+   V +     +P  ++ + +  +   H
Sbjct: 172 -SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR-VKPQRSKVKHHHH 227

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 82.3 bits (203), Expect = 4e-17
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 166 PLHYAAASGN---VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
               AA +G    +  +  LL + + +   +         LAAENG L VL  L    P 
Sbjct: 95  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPT 153

Query: 223 A-IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL-HS 280
             + +    +     +AA++G+ ++++ + +    E     I      +   AA+G  H 
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM-IQAENYYAFRWAAVGRGHH 212

Query: 281 DVVFTLSRHKSVNIRAKNRSARNNTTLEI 309
           +V+  L     V +              +
Sbjct: 213 NVINFLLDC-PVMLAYAEIHEFEYGEKYV 240

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 79.2 bits (195), Expect = 4e-16
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 13/157 (8%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHL 203
            + +L T+ +++  +          AA +G++ ++ RL E    ++             L
Sbjct: 110 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169

Query: 204 AAENGELKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
           AAENG L VL  L    P      I+  +  +    A   G+ N+++F+L          
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD--------- 220

Query: 262 LIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
                   +           V   ++RH +      +
Sbjct: 221 -CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD 256

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.1 bits (179), Expect = 4e-14
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 13/184 (7%)

Query: 133 SKSMQFLQFIDIMVKILGTNKD----LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQ 188
               Q     + +  +  + K+     +      ++          +     + L +   
Sbjct: 27  ENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWS--- 83

Query: 189 LAYKRDCNGATPLHLAAENG---ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 245
            A+K+         +AA  G    L  L LL+      +++    +     +AA++G+ +
Sbjct: 84  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLH 142

Query: 246 IVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNT 305
           +++ + +    E +   I      +  LAA   H  V+  L              A N  
Sbjct: 143 VLNRLCELAPTEIMAM-IQAENYHAFRLAAENGHLHVLNRLCELAP-TEATAMIQAENYY 200

Query: 306 TLEI 309
               
Sbjct: 201 AFRW 204

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.2 bits (169), Expect = 7e-13
 Identities = 36/302 (11%), Positives = 74/302 (24%), Gaps = 72/302 (23%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           +     +AA  G   +++ + +  P    A           M   E            H 
Sbjct: 128 NYQAFRLAAENGHLHVLNRLCELAPTEIMA-----------MIQAENYHAFRLAAENGHL 176

Query: 62  RVIRILVEKDSAPSS-YINKAYQTPLSIA------IDVRLNDIACFIIDKSSESLNATRL 114
            V+  L E     ++  I          A       +V       F++D       A   
Sbjct: 177 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV-----INFLLDCPVMLAYAEI- 230

Query: 115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASG 174
             E      +V                       +  + + +  +     +    +   G
Sbjct: 231 -HEFEYGEKYV--------------------NPFIARHVNRLKEMH----DAFKLSNPDG 265

Query: 175 NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE---LKVLKLLIN----KYPDAIEIR 227
              +V +               G   L       +   L  ++ L++    K        
Sbjct: 266 VFDLVTKSECL----------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315

Query: 228 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS 287
                 +L +A + GN    + +L  P +  L          + ++   G   D+     
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVLALTK------ANNYYINETGGRLDLRAVAL 369

Query: 288 RH 289
            H
Sbjct: 370 EH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 33/230 (14%), Positives = 59/230 (25%), Gaps = 59/230 (25%)

Query: 145 MVKILGTNKDLINRLDWHQRN--PLHYAAASGNVQMVQRLLEASKQLAYK-RDCNGATPL 201
           ++  L               N      AA +G++ ++ RL E +   A            
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202

Query: 202 HLAA---------------------------ENGELKVLKLLINKYPDAIEIRDN----- 229
             AA                           E GE  V   +        E+ D      
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 230 --------------SDRSILHVAAKHGNWNI---VSFILKSPEMENL--INLIDRNGNTS 270
                             +L    +  +  +   + F+L  P ++ L     I  + N  
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322

Query: 271 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEV 320
           L LA    +      L     ++I +     + N     +   R D+  V
Sbjct: 323 LRLALRLGNQGACALL-----LSIPSVLALTKANNYYINETGGRLDLRAV 367

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 74.3 bits (184), Expect = 1e-16
 Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 4/88 (4%)

Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
           NG TPLHLAA NG L+V+KLL+    D +  +D + R+ LH+AA++G+  +V  +L   E
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56

Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVV 283
               +N  D+NG T LHLAA   H +VV
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.9 bits (183), Expect = 2e-16
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 6/86 (6%)

Query: 164 RNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221
           R PLH AA +G++++V+ LLE  A       +D NG TPLHLAA NG L+V+KLL+    
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 222 DAIEIRDNSDRSILHVAAKHGNWNIV 247
           D +  +D + R+ LH+AA++G+  +V
Sbjct: 60  D-VNAKDKNGRTPLHLAARNGHLEVV 84

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.6 bits (151), Expect = 3e-12
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 11/80 (13%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
           +VK+L   G +   +N  D + R PLH AA +G++++V+ LLE  A       +D NG T
Sbjct: 17  VVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRT 70

Query: 200 PLHLAAENGELKVLKLLINK 219
           PLHLAA NG L+V+KLL+  
Sbjct: 71  PLHLAARNGHLEVVKLLLEA 90

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 166 PLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
            L  AA +G    V+ L+   A       +D NG+TPLHLAA NG L+V+KLL+    D 
Sbjct: 27  KLLEAARAGQDDEVRILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGAD- 82

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFI 250
           +  +D   ++   ++  +GN ++   +
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.4 bits (163), Expect = 1e-13
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 170 AAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIR 227
            ++  +      L+   +          +    L  AA  G+   +++L+    D +  +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM------GSDLGKKLLEAARAGQDDEVRILMANGAD-VAAK 53

Query: 228 DNSDRSILHVAAKHGNWNIVSFILKSPEMENL--INLIDRNGNTSLHLAAMGLHSDVVFT 285
           D +  + LH+AA++G+  +V  +L     E    +   D+ G T+  ++    + D+   
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLL-----EAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108

Query: 286 L 286
           L
Sbjct: 109 L 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 11/77 (14%)

Query: 145 MVKIL---GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGAT 199
            V+IL   G +   +   D +   PLH AA +G++++V+ LLE  A       +D  G T
Sbjct: 39  EVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV---XAQDKFGKT 92

Query: 200 PLHLAAENGELKVLKLL 216
              ++ +NG   + ++L
Sbjct: 93  AFDISIDNGNEDLAEIL 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 65/408 (15%), Positives = 119/408 (29%), Gaps = 114/408 (27%)

Query: 202 HLAAENGEL-----KVLKLLINKYPDAIEIRDNSD--RSILHVAAKHGNWNIVSFILKSP 254
           H+  E GE       +L +  + + D  + +D  D  +SIL           +  I+ S 
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-------IDHIIMSK 58

Query: 255 EMEN-----LINLIDRNGNTSLHLAAMGLHSDVVFTLSR-HKSVNIRAKNR----SARNN 304
           +  +        L+ +            L  +  F +S         +         R+ 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 305 TTLEIDEMTRADVTEVQKHLTLK-AL------------------KTAYAKRALSAEELQQ 345
              +     + +V+ +Q +L L+ AL                  KT  A     + ++Q 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 346 K----------RQVSKEEGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGT 395
           K          +  +  E     EM Q LL       T     +  I    +   +    
Sbjct: 179 KMDFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAEL 234

Query: 396 TTLLHRATMTSTMAAAAIVF---WSFW-------RSKT------ESLLDTLPLAIGFTWI 439
             LL      + +    +V     +           K       + + D L  A   T I
Sbjct: 235 RRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHI 289

Query: 440 ALISMTLVFMTG-LYAVLSNGLTITI-----VVCAISSLLPFIFYVFAPFFMIMLCKSVR 493
           +L   ++      + ++L   L          V   +           P  + ++ +S+R
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----------PRRLSIIAESIR 338

Query: 494 VTIVCKLDAHYYHVNPDKLI-----------------YFHHLSTFRES 524
             +    D ++ HVN DKL                   F  LS F  S
Sbjct: 339 DGL-ATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 86/580 (14%), Positives = 158/580 (27%), Gaps = 199/580 (34%)

Query: 18  VSEIMKYVPAVNQAGSASVLETLFGMRD-IEGNTPLHNVVTKKHKRVIRILVEKDSAPSS 76
           V ++ K +       S   ++ +   +D + G   L   +  K + +++  VE +    +
Sbjct: 38  VQDMPKSIL------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRIN 90

Query: 77  Y------INKAYQTPLSIAI------DVRLNDIACFIIDKSSESLNATRLPDELTLLHFF 124
           Y      I    + P  +        D   ND   F         N +RL   L L    
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA------KYNVSRLQPYLKL---- 140

Query: 125 VMRQN-YDLSKSMQFLQFIDIMVKILGTNK-----DLINRLDWHQRNPLH-YAAASGNVQ 177
             RQ   +L +  + +  ID +   LG+ K     D+        +     +     N  
Sbjct: 141 --RQALLEL-RPAKNV-LIDGV---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 178 MVQRLLEASKQLAYKRDCNG--------ATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
             + +LE  ++L Y+ D N            L + +   EL+ L L    Y + + +  N
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLN 252

Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
                  V       N         +                   A  L   ++ T +R 
Sbjct: 253 -------V------QN--------AK----------------AWNAFNLSCKILLT-TRF 274

Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA-LSAEELQQKRQ 348
           K V              L     T   +      LT   +K+   K      ++L     
Sbjct: 275 KQV-----------TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----- 318

Query: 349 VSKEEGEKGKEMAQTLLVMATLIATFLFTAAFTIPGGFKSDGLDEGTTTLLHRATMTSTM 408
               E             ++ +IA  +             DGL                 
Sbjct: 319 --PREVLTT-----NPRRLS-IIAESI------------RDGLAT--------------- 343

Query: 409 AAAAIVFWSFWR--------SKTESLLDTLP----------LAIGF---TWIALISMTLV 447
                  W  W+        +  ES L+ L           L++ F     I   ++ L 
Sbjct: 344 -------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIP--TILLS 393

Query: 448 FMTGLYAVLSNGLTITIVV-CAISSLL-----PFIFYVFAPFFMIMLCKSV--------- 492
               ++  +     + +V      SL+          + +  ++ +  K           
Sbjct: 394 L---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSI 449

Query: 493 --RVTIVCKLDAHYYHVNP-DKLIYFH---HLSTFRESKM 526
                I    D+        D+  Y H   HL      + 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 193 RDCNGATPLHLAAENGELKVLKL--LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
                 T LHLA  + +   L +   + +    ++ +     + LH      N   +  +
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 251 LKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286
           L+       I + + +G T L +A    H      L
Sbjct: 225 LRGK---ASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 15/162 (9%)

Query: 65  RILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF 124
           R    K  A ++    +    +       L       +D + +   A     + T LH  
Sbjct: 117 RRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLA 176

Query: 125 VMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE 184
           V   +      + FL            N   +++        LHY   + N + ++ LL 
Sbjct: 177 VRSVDRTSLHIVDFL----------VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL- 225

Query: 185 ASKQLAYKRDCNGATPLHLAAENGELKVLKLLI----NKYPD 222
             K      + +G TPL +A         +LL      ++  
Sbjct: 226 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           DET LH+A R  D   +      V  + Q             +  +G+T LH      + 
Sbjct: 169 DETALHLAVRSVDRTSLH----IVDFLVQNSGNL------DKQTGKGSTALHYCCLTDNA 218

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFII 102
             +++L+ +  A     N++ +TPL IA  ++       + 
Sbjct: 219 ECLKLLL-RGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCN-----GATPLHLAAENGE---LKVLKLL 216
             L  A  + ++  V       +                  LHLA +      L ++  +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212

Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
           I      ++ +     + LH AA +   + +  +LK      L+  ++  G T+L +A  
Sbjct: 213 IQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARK 268

Query: 277 GLHSDVVFTL 286
             H +    L
Sbjct: 269 KHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 9e-07
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 162 HQRNPLHYAAASGN---VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
            +   LH A    N   + +V  +++    L   +  +G T LH AA   +   LKLL+ 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLLL- 246

Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
           K    +   + +  + L +A K  +      + ++
Sbjct: 247 KGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
           +V  +  N   ++         LHYAA       ++ LL+  + L    +  G T L +A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIA 266

Query: 205 AENGELKVLKLLIN 218
            +    +  +LL  
Sbjct: 267 RKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 17/112 (15%)

Query: 2   DETPLHIAARIGDHA---IVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTK 58
           +E  LH+A ++ + A   +V  I++    ++              +  +GNT LH     
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDA-------------KAADGNTALHYAALY 236

Query: 59  KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLN 110
                +++L+ K  A    +N+A +T L IA      +    +    + +  
Sbjct: 237 NQPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 287

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 100 FIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFL-QFIDIMVKILGTNKDLINR 158
           +I+ K  E   A R   E   L   +  +  DL   ++      D    + G +      
Sbjct: 115 YIMAKYVEHRFARRCTPEPQRLWTAICNR--DLLSVLEAFANGQDFGQPLPGPD------ 166

Query: 159 LDWHQRNPLHYAAA---SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
               +   LH A       ++ +V  +++    L   +  +G T LH AA   +   LKL
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGNTALHYAALYNQPDCLKL 225

Query: 216 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
           L+      +   + +  + L +A K  +      + +
Sbjct: 226 LLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ 261

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 17/98 (17%)

Query: 3   ETPLHIAARIGDH---AIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKK 59
           E  LH+A ++ +     +V  I++    ++              +  +GNT LH      
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLD-------------AKAADGNTALHYAALYN 218

Query: 60  HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDI 97
               +++L+ K  A    +N+A +T L IA      + 
Sbjct: 219 QPDCLKLLL-KGRALVGTVNEAGETALDIARKKHHKEC 255

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
             + L  N   +N+ D   R PLH+A   G+  +    L+    L   RD  G  PL +A
Sbjct: 250 ACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIA 308

Query: 205 AENGELKVLKLLINKYPDAIEIRDNS 230
            E     ++ LL        E     
Sbjct: 309 METANADIVTLLRLAKMREAEAAQGQ 334

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-46  Score=381.05  Aligned_cols=298  Identities=24%  Similarity=0.352  Sum_probs=212.7

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||+||+.|+.++|++|+++|++++.             +|..|.||||+|+..|+.++|++|+++|+++. ..+.
T Consensus        46 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~  111 (437)
T 1n11_A           46 KVETPLHMAARAGHTEVAKYLLQNKAKVNA-------------KAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATT  111 (437)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCC
Confidence            378899999999999999999998888774             56667777777777777777777777776654 4566


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHH------------
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKI------------  148 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~------------  148 (534)
                      .|.||||+|+..|+.+++++|++++++ .+..+. .|.||||.|+..|+.++         ++.+++.            
T Consensus       112 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~-~g~t~L~~A~~~g~~~~---------v~~Ll~~g~~~~~~~~~g~  180 (437)
T 1n11_A          112 AGHTPLHIAAREGHVETVLALLEKEAS-QACMTK-KGFTPLHVAAKYGKVRV---------AELLLERDAHPNAAGKNGL  180 (437)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCT-TSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCSSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCC-CCCCHHHHHHHcCCHHH---------HHHHHhCCCCCCCCCCCCC
Confidence            666666666666666666666666655 233333 56666666666666655         3333332            


Q ss_pred             -----------------hCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHH
Q 039300          149 -----------------LGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELK  211 (534)
Q Consensus       149 -----------------~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  211 (534)
                                       +.+.+..++..+..|.||||+|+..|+.+++++|++.|++.. ..+..|.||||.|+..|+.+
T Consensus       181 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~  259 (437)
T 1n11_A          181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAE  259 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHH
Confidence                             111223445555566666666666666666666666666543 45667777777777777777


Q ss_pred             HHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcc
Q 039300          212 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS  291 (534)
Q Consensus       212 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  291 (534)
                      ++++|++++++ ++..|..|+||||+|+..|+.+++++|++++.+   ++.+|..|+||||+|+..|+.+++++|+++ |
T Consensus       260 ~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g  334 (437)
T 1n11_A          260 MVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQH-Q  334 (437)
T ss_dssp             HHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-T
T ss_pred             HHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-C
Confidence            77777777776 677777778888888888888888888877665   788888888888888888888888888887 7


Q ss_pred             cchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          292 VNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       292 ~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      ++++.+|.  .|.|||++|..       ....+++++|+++|++.+.
T Consensus       335 ad~n~~~~--~g~t~L~~A~~-------~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          335 ADVNAKTK--LGYSPLHQAAQ-------QGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCCC--CCCCHHHHHHH-------CChHHHHHHHHHCcCCCCC
Confidence            88888888  88889888887       3456788888888887654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-45  Score=377.18  Aligned_cols=294  Identities=23%  Similarity=0.271  Sum_probs=267.2

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|.||||+||..|+.++|++|+++|++++             .+|..|.||||+|+..|+.++|++|+++|++++ ..+.
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~   78 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLLQRGASPN-------------VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAK   78 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCSC-------------CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCC
Confidence            38999999999999999999999999887             378899999999999999999999999998875 6789


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|++++++ ++..+. .|.||||.|+..|+.++         ++.+++..    ...+..+
T Consensus        79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~t~L~~A~~~g~~~~---------v~~Ll~~~----~~~~~~~  143 (437)
T 1n11_A           79 DDQTPLHCAARIGHTNMVKLLLENNAN-PNLATT-AGHTPLHIAAREGHVET---------VLALLEKE----ASQACMT  143 (437)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCT-TCCCHHHHHHHHTCHHH---------HHHHHHTT----CCSCCCC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCC-CCCcHHHHHHHcCCHHH---------HHHHHhCC----CCCcCCC
Confidence            999999999999999999999999987 566666 89999999999999998         88888753    4566778


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||.|+..|+.+++++|++++.+ ++..+..|+||||+|+.
T Consensus       144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          144 KKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHH
Confidence            889999999999999999999999999865 6788999999999999999999999999988 78889999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHH
Q 039300          241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEV  320 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~  320 (534)
                      .|+.+++++|++.+.+   ++..|..|.||||+|+..|+.+++++|+++ +++++..|.  .|.|||++|..       .
T Consensus       222 ~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~--~g~t~L~~A~~-------~  288 (437)
T 1n11_A          222 QNQVEVARSLLQYGGS---ANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNK--SGLTPLHLVAQ-------E  288 (437)
T ss_dssp             TTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCT--TCCCHHHHHHH-------H
T ss_pred             cCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCC--CCCCHHHHHHH-------c
Confidence            9999999999999876   889999999999999999999999999998 789999999  99999999997       4


Q ss_pred             HHHhHHHHHHHHhhhccC
Q 039300          321 QKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       321 ~~~~~~~~L~~~ga~~~~  338 (534)
                      ....+++.|+++|++.+.
T Consensus       289 ~~~~~~~~Ll~~g~~~~~  306 (437)
T 1n11_A          289 GHVPVADVLIKHGVMVDA  306 (437)
T ss_dssp             TCHHHHHHHHHHTCCTTC
T ss_pred             CCHHHHHHHHhCCccCCC
Confidence            567788999999887654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.4e-43  Score=350.10  Aligned_cols=292  Identities=21%  Similarity=0.239  Sum_probs=252.7

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccC-CCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRD-IEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d-~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      |+||||.||+.|+.++|++||++|+++|.             +| ..|.||||+|+.+|+.++|++|+++|+++. ..+.
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~-------------~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~   90 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNF-------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKK   90 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTC-------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCc-------------cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhcc
Confidence            67999999999999999999999999884             44 459999999999999999999999999985 6789


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCC------Chh
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGT------NKD  154 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~------~~~  154 (534)
                      .+.+|++.++..+..+++..+++.+.+ ++..+. .|.||+|.|+..++.++         ++.+++....      ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~-~g~t~l~~A~~~~~~~~---------~~~ll~~ga~~~~~~~~~~  159 (337)
T 4g8k_A           91 NGATPFILAAIAGSVKLLKLFLSKGAD-VNECDF-YGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKE  159 (337)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCBCT-TCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCC-
T ss_pred             CCCchhHHHHhcccchhhHHhhhccch-hhhhcc-CCCCHHHHHHHcCcHHH---------HHHHHHcCCCcchhhcccc
Confidence            999999999999999999999999987 566676 99999999999999998         8888775431      122


Q ss_pred             hhhcccCCCCcHHHHHHhCCCHHHHHHHHhh-chhhhcccCCCCCcHHHHHHHcCc----HHHHHHHHHhCCCccccccC
Q 039300          155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHLAAENGE----LKVLKLLINKYPDAIEIRDN  229 (534)
Q Consensus       155 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~  229 (534)
                      ..+..+..|.||||+|+..|+.+++++|++. |+++. ..|..|.||+|.++..+.    .+++++|+++|++ ++.+|.
T Consensus       160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~  237 (337)
T 4g8k_A          160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGE  237 (337)
T ss_dssp             ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCG
T ss_pred             ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCC
Confidence            3345567899999999999999999999965 77754 788999999998876543    4688999999999 899999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhC-CcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHH
Q 039300          230 SDRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLE  308 (534)
Q Consensus       230 ~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~  308 (534)
                      .|+||||+|+..|+.++++.|++. +.+   +|.+|.+|+||||+|++.|+.+++++|+++ |+|+|       +.|||+
T Consensus       238 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAd~n-------~~~~L~  306 (337)
T 4g8k_A          238 RGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTD-------CGDLVM  306 (337)
T ss_dssp             GGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHTT-SCSST-------TCCHHH
T ss_pred             CCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCC-------CCCHHH
Confidence            999999999999999999999986 444   899999999999999999999999999998 78774       457999


Q ss_pred             HhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          309 IDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       309 ~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      +|..       ..+.+++++|+++||+.+.
T Consensus       307 ~A~~-------~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          307 TARR-------NYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHH-------TTCHHHHHHHHHTTCCC--
T ss_pred             HHHH-------cCCHHHHHHHHHCcCCCCC
Confidence            9998       3457899999999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.4e-43  Score=336.01  Aligned_cols=264  Identities=20%  Similarity=0.240  Sum_probs=240.5

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |+||||.|++.|+.++|++|++.|++++.            ..+..|.||||+|+..|+.+++++|+++|+++. ..+..
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~   71 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNF------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKN   71 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCccc------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCC
Confidence            78999999999999999999999998774            237889999999999999999999999998885 67899


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc--
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL--  159 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--  159 (534)
                      |.||||+|+..|+.+++++|++++++ ++..+. .|.||||.|+..++.++         ++.+++...    .++..  
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~t~L~~A~~~~~~~~---------~~~Ll~~g~----~~~~~~~  136 (285)
T 1wdy_A           72 GATPFLLAAIAGSVKLLKLFLSKGAD-VNECDF-YGFTAFMEAAVYGKVKA---------LKFLYKRGA----NVNLRRK  136 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCT-TCCBHHHHHHHTTCHHH---------HHHHHHTTC----CTTCCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCc-ccCCHHHHHHHhCCHHH---------HHHHHHhCC----Ccccccc
Confidence            99999999999999999999999987 566666 89999999999999998         888887643    33333  


Q ss_pred             --------cCCCCcHHHHHHhCCCHHHHHHHHhh-chhhhcccCCCCCcHHHHHHHcCc----HHHHHHHHHhCCCcccc
Q 039300          160 --------DWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHLAAENGE----LKVLKLLINKYPDAIEI  226 (534)
Q Consensus       160 --------d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~  226 (534)
                              +..|.||||.|+..|+.+++++|++. |.++. ..|..|.||||.|+..++    .+++++|++.+.+ ++.
T Consensus       137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~  214 (285)
T 1wdy_A          137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNV  214 (285)
T ss_dssp             CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSC
T ss_pred             cHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCC
Confidence                    78899999999999999999999998 77754 778899999999999999    9999999999998 899


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHh-CCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300          227 RDNSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       227 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~-~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~  299 (534)
                      +|..|+||||+|+..|+.+++++|++ .+.+   ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.
T Consensus       215 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence            99999999999999999999999999 6666   899999999999999999999999999998 899988764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.3e-41  Score=334.73  Aligned_cols=274  Identities=19%  Similarity=0.232  Sum_probs=244.6

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhc-CccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            2 DETPLHIAARIGDHAIVSEIMKY-VPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      |.|+||.||+.|+.+.|+.|+.. +.+++             .+|..|.||||+|+..|+.++|++|+++|+++. ..|.
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~   89 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCH-------------ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDK   89 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCC-------------CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCcc-------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCC
Confidence            57899999999999999999976 55544             589999999999999999999999999999885 6789


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++         ++.|++..    ..++..+
T Consensus        90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~~g----~~~~~~~  154 (351)
T 3utm_A           90 GGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDL-WQFTPLHEAASKNRVEV---------CSLLLSHG----ADPTLVN  154 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TCCCHHHHHHHTTCHHH---------HHHHHHTT----CCTTCCC
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCC-CCCCHHHHHHHcCCHHH---------HHHHHHcC----CCCcccc
Confidence            999999999999999999999999987 566665 89999999999999999         88888763    5678888


Q ss_pred             CCCCcHHHHH---------------------HhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc---CcHHHHHHH
Q 039300          161 WHQRNPLHYA---------------------AASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN---GELKVLKLL  216 (534)
Q Consensus       161 ~~g~tpL~~A---------------------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~L  216 (534)
                      ..|.||++.|                     +..++.+.++.++..+... ...+..|.||||.|+..   +..+++++|
T Consensus       155 ~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~L  233 (351)
T 3utm_A          155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELL  233 (351)
T ss_dssp             TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHH
T ss_pred             CCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHH
Confidence            9999987764                     4566677777777666543 35677899999999999   668999999


Q ss_pred             HHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhh
Q 039300          217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA  296 (534)
Q Consensus       217 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  296 (534)
                      ++.+.+ ++.+|..|+||||+|+.+|+.+++++|+++|++   +|.+|..|+||||+|+..|+.+++++|+++ |+|++.
T Consensus       234 l~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~  308 (351)
T 3utm_A          234 LRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSI  308 (351)
T ss_dssp             HHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred             HHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCC
Confidence            999999 899999999999999999999999999999887   999999999999999999999999999998 899999


Q ss_pred             ccccCCCCChHHHhHh
Q 039300          297 KNRSARNNTTLEIDEM  312 (534)
Q Consensus       297 ~n~~~~g~t~l~~a~~  312 (534)
                      +|.  .|.||+++|.+
T Consensus       309 ~~~--~g~tal~~a~~  322 (351)
T 3utm_A          309 ISL--QGFTAAQMGNE  322 (351)
T ss_dssp             CCT--TSCCHHHHSCH
T ss_pred             cCC--CCCChhhhhhH
Confidence            999  99999999965

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-41  Score=324.46  Aligned_cols=264  Identities=21%  Similarity=0.249  Sum_probs=241.5

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM  126 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~  126 (534)
                      +|+||||.|++.|+.+++++|++.|+++....+..|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~-~g~t~L~~A~~   81 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK-NGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TCCCHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCC-CCCCHHHHHHH
Confidence            5789999999999999999999999998766688899999999999999999999999987 566665 89999999999


Q ss_pred             hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhccc---------CCCC
Q 039300          127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR---------DCNG  197 (534)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~---------~~~g  197 (534)
                      .++.++         ++.+++.    +..++..|..|.||||+|+..|+.+++++|++.|+++....         +..|
T Consensus        82 ~~~~~~---------v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g  148 (285)
T 1wdy_A           82 AGSVKL---------LKLFLSK----GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  148 (285)
T ss_dssp             HTCHHH---------HHHHHHT----TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred             cCCHHH---------HHHHHHc----CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCC
Confidence            999998         8888875    35688899999999999999999999999999998765321         7789


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCcHHHHHHhcCC----HHHHHHHHhCCcccccccccCCCCCcHHH
Q 039300          198 ATPLHLAAENGELKVLKLLINK-YPDAIEIRDNSDRSILHVAAKHGN----WNIVSFILKSPEMENLINLIDRNGNTSLH  272 (534)
Q Consensus       198 ~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh  272 (534)
                      .||||.|+..|+.+++++|++. +.+ ++..|..|+||||+|+..++    .+++++|++.+++   ++.+|..|+||||
T Consensus       149 ~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~  224 (285)
T 1wdy_A          149 ATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLI  224 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC---CCCcCCCCCcHHH
Confidence            9999999999999999999998 665 89999999999999999999    9999999999887   8999999999999


Q ss_pred             HHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          273 LAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       273 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      +|+..|+.+++++|++..|++++.+|.  .|.|||++|..       ....+++++|+++|++...
T Consensus       225 ~A~~~~~~~~v~~Ll~~~g~~~~~~~~--~g~t~l~~A~~-------~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          225 LAVEKKHLGLVQRLLEQEHIEINDTDS--DGKTALLLAVE-------LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHHSSCSCC
T ss_pred             HHHHcCCHHHHHHHHhccCCCccccCC--CCCcHHHHHHH-------cCcHHHHHHHHHcCCCCCc
Confidence            999999999999999977999999999  99999999998       4567899999999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.5e-41  Score=323.11  Aligned_cols=268  Identities=16%  Similarity=0.206  Sum_probs=200.2

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+|+||+||..|+.+.++.++..++..-  .........++.+|..|+||||+|+..|+.++|++|++.|++++ ..|.
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~   90 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDF--PGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA   90 (285)
T ss_dssp             ----------------------------C--CSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccc--cchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence            37899999999999888888877654311  01111123356789999999999999999999999999998875 6789


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++         ++.|++...    .++. +
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~~g~----~~~~-~  154 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTA-DWHTPLFNACVSGSWDC---------VNLLLQHGA----SVQP-E  154 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCT-TCCCHHHHHHHHTCHHH---------HHHHHHTTC----CSSC-S
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCC-CCCCHHHHHHHcCHHHH---------HHHHHHCCC----CCCC-C
Confidence            999999999999999999999999987 566666 89999999999999988         888887643    3333 3


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++ ++ .|..|+||||+|+.
T Consensus       155 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~  231 (285)
T 3d9h_A          155 SDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVR  231 (285)
T ss_dssp             CTTSCHHHHHHHHTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHH
Confidence            458999999999999999999999998765 6788999999999999999999999999888 56 48889999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchh
Q 039300          241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR  295 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~  295 (534)
                      .|+.+++++|++.|++   ++.+|.+|+||||+|+  ++.+++++|+++.++++.
T Consensus       232 ~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          232 TASEELACLLMDFGAD---TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             TTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            9999999999999877   8899999999999998  456899999988676654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.1e-41  Score=333.97  Aligned_cols=279  Identities=16%  Similarity=0.152  Sum_probs=218.5

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |.||||+||..|+.++|++|+++|++++             .+|..|.||||+|+..|+.++|++|+++|++..   +.+
T Consensus        20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~   83 (364)
T 3ljn_A           20 NMEKIHVAARKGQTDEVRRLIETGVSPT-------------IQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWH   83 (364)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcc-------------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccC
Confidence            5688888888888888888888887776             377888888888888888888888888887543   457


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      |.||||+|+..|+.+++++|++.+..        .|..+-...........                   .....+..|.
T Consensus        84 g~t~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~  136 (364)
T 3ljn_A           84 GQKPIHLAVMANKTDLVVALVEGAKE--------RGQMPESLLNECDEREV-------------------NEIGSHVKHC  136 (364)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHHHHH--------HTCCHHHHHTCCCCCCE-------------------EEETTEEEEE
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccc--------cCCCHHHHHhhcchHhh-------------------hhhccccCCC
Confidence            88888888888888888888887332        11111111111111110                   0123456888


Q ss_pred             CCCcHHHHHHhCC--CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc----cccccCCCCcHH
Q 039300          162 HQRNPLHYAAASG--NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA----IEIRDNSDRSIL  235 (534)
Q Consensus       162 ~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~L  235 (534)
                      .|.||||+|+..|  +.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++.    ++..|..|+|||
T Consensus       137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L  215 (364)
T 3ljn_A          137 KGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL  215 (364)
T ss_dssp             SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH
Confidence            9999999999999  9999999999999865 77899999999999999999999999998874    788999999999


Q ss_pred             HHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcc----------ccCCCCC
Q 039300          236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN----------RSARNNT  305 (534)
Q Consensus       236 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n----------~~~~g~t  305 (534)
                      |+|+..|+.+++++|+++|++   +|.+|.+|.||||+|+..|+.+++++|+++ +++++..+          .+..+.|
T Consensus       216 ~~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~  291 (364)
T 3ljn_A          216 HWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWL  291 (364)
T ss_dssp             HHHHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccc
Confidence            999999999999999999887   899999999999999999999999999998 56654432          2227888


Q ss_pred             hHHHhHhhhhchHHHHHHhHHHHHHHHhh
Q 039300          306 TLEIDEMTRADVTEVQKHLTLKALKTAYA  334 (534)
Q Consensus       306 ~l~~a~~~~~~~~~~~~~~~~~~L~~~ga  334 (534)
                      |+..|...      .....+.++|.+...
T Consensus       292 ~l~~aa~~------~~~~~v~~ll~~~~~  314 (364)
T 3ljn_A          292 DFVPAAAD------PSKQEVLQLLQEKLD  314 (364)
T ss_dssp             TTSCSSCC------HHHHHHHHHHHHHHH
T ss_pred             cchhhhhc------cCHHHHHHHHHHHHH
Confidence            88887762      334455555554433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.5e-40  Score=314.03  Aligned_cols=259  Identities=16%  Similarity=0.178  Sum_probs=182.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||+||+.|+.++|++|+++|++.+          .++.+|..|.||||+|+..|+.++|++|+++|+++. ..+.
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~   76 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHE----------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAER   76 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSG----------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcc----------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCC
Confidence            48999999999999999999999988733          244689999999999999999999999999999985 6789


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|+++++........    +.                         +.      .......
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~-------------------------~~------~~~~~~~  121 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TY-------------------------LT------QSQDCTP  121 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HH-------------------------hh------cccccCc
Confidence            9999999999999999999999999873211110    00                         00      0011122


Q ss_pred             CCCCcHHHHHHhCCCHH-HHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCcHHHHH
Q 039300          161 WHQRNPLHYAAASGNVQ-MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN-SDRSILHVA  238 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A  238 (534)
                      ..+.++++.++..+... ....+...+.++ +..+..|.||||+|+..|+.+++++|++++++ ++..+. .|+||||+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A  199 (282)
T 1oy3_D          122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLA  199 (282)
T ss_dssp             ----------------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHH
T ss_pred             chhcchhhhccccccchhhhhhhhhhhhcC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHH
Confidence            33556666666554433 333444445544 36788888999999999999999999988888 666664 488999999


Q ss_pred             HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300          239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT  313 (534)
Q Consensus       239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~  313 (534)
                      +.+|+.+++++|+++|++   ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.  .|.||+++|...
T Consensus       200 ~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~a~~~  268 (282)
T 1oy3_D          200 VEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGG--DKLSPCSSSGSD  268 (282)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC---------------
T ss_pred             HHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCC--cccccccccCCc
Confidence            999999999999988876   888888999999999999999999999888 788998888  899999988764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.4e-39  Score=317.23  Aligned_cols=260  Identities=19%  Similarity=0.184  Sum_probs=229.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |+||||+||..|+.++|++|+++|++++.             +|..+.+|++.++..++.+++..+++.++++. ..|..
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~  124 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVL-------------RKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFY  124 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhh-------------hccCCCchhHHHHhcccchhhHHhhhccchhh-hhccC
Confidence            89999999999999999999999999884             88999999999999999999999999998885 67999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCc---------ccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESL---------NATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTN  152 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~  152 (534)
                      |.||||+|+..|+.+++++|+++|++..         ...+. .|.||||+|+..|+.++         ++.|++...  
T Consensus       125 g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~-~g~T~L~~A~~~g~~~~---------v~~LL~~~g--  192 (337)
T 4g8k_A          125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK-GGATALMDAAEKGHVEV---------LKILLDEMG--  192 (337)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTT-CSCCHHHHHHHHTCHHH---------HHHHHHHSC--
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccC-CCCcHHHHHHHCCCHHH---------HHHHHhccC--
Confidence            9999999999999999999999998721         11222 68999999999999999         888887644  


Q ss_pred             hhhhhcccCCCCcHHHHHHhCCC----HHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc
Q 039300          153 KDLINRLDWHQRNPLHYAAASGN----VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD  228 (534)
Q Consensus       153 ~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d  228 (534)
                       .+++..|..|.|++|.++..+.    .+++++|+++|++++ .+|..|.||||+|+..|+.++++.|++.+...++.+|
T Consensus       193 -ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d  270 (337)
T 4g8k_A          193 -ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  270 (337)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC
T ss_pred             -CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC
Confidence             7789999999999998876543    468899999999865 7889999999999999999999999987544499999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcc
Q 039300          229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN  298 (534)
Q Consensus       229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n  298 (534)
                      ..|+||||+|+++|+.+++++|+++|++   +|     +.||||+|+..|+.+++++|+++ |+++|...
T Consensus       271 ~~G~TpL~~A~~~g~~~iv~~Ll~~GAd---~n-----~~~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~~  331 (337)
T 4g8k_A          271 SDGKTALLLAVELKLKKIAELLCKRGAS---TD-----CGDLVMTARRNYDHSLVKVLLSH-GAKEDFHP  331 (337)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHTTSCS---ST-----TCCHHHHHHHTTCHHHHHHHHHT-TCCC----
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCC---CC-----CCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCC
Confidence            9999999999999999999999999986   54     45699999999999999999998 79988643

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-40  Score=331.13  Aligned_cols=257  Identities=20%  Similarity=0.299  Sum_probs=222.3

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccC-CCCCcHhHHHHHhCcHHHHHHHH--------HcC
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRD-IEGNTPLHNVVTKKHKRVIRILV--------EKD   71 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d-~~g~TpLh~A~~~g~~e~v~~Ll--------~~g   71 (534)
                      .|+||||.||..|+ +++++|+..  +++             .+| ..|.||||+|+.+|+.+++++|+        +.|
T Consensus        93 ~g~t~L~~Aa~~~~-~~~~~L~~~--~~n-------------~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g  156 (373)
T 2fo1_E           93 ESPIKLHTEAAGSY-AITEPITRE--SVN-------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG  156 (373)
T ss_dssp             -CCCHHHHHHHSSS-CCCSCCSTT--TTT-------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC
T ss_pred             CCccHHHHHhcCCc-hHHHHhccc--ccc-------------ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC
Confidence            38899999999654 777777643  333             466 78999999999999998888776        789


Q ss_pred             CCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCC
Q 039300           72 SAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGT  151 (534)
Q Consensus        72 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~  151 (534)
                      ++++ ..|..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.++         ++.|++... 
T Consensus       157 a~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~-~g~t~L~~A~~~g~~~~---------v~~Ll~~~~-  223 (373)
T 2fo1_E          157 ADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNK-SERSALHQAAANRDFGM---------MVYMLNSTK-  223 (373)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCT-TCCCHHHHHHHTTCHHH---------HHHHTTSHH-
T ss_pred             CCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCC-CCCCHHHHHHHCCCHHH---------HHHHHhcCc-
Confidence            8875 6789999999999999999999999999998 566666 89999999999999988         665554320 


Q ss_pred             ChhhhhcccCCCCcHHHHHHhCC---CHHHHHHHHhhchhhhc-------ccCCCCCcHHHHHHHcCcHHHHHHHHHhCC
Q 039300          152 NKDLINRLDWHQRNPLHYAAASG---NVQMVQRLLEASKQLAY-------KRDCNGATPLHLAAENGELKVLKLLINKYP  221 (534)
Q Consensus       152 ~~~~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~~~~-------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  221 (534)
                      .+.+++..|..|.||||+|+..+   +.+++++|++.|+++..       ..|..|.||||+|+..|+.+++++|++.++
T Consensus       224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  303 (373)
T 2fo1_E          224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG  303 (373)
T ss_dssp             HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred             cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence            01568888999999999999988   89999999999987653       256789999999999999999999999884


Q ss_pred             CccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       222 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      ..++.+|..|+||||+|+.+|+.+++++|+++|++   ++.+|..|+||||+|+.+|+.+++++|+++
T Consensus       304 ~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad---~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            44899999999999999999999999999999887   899999999999999999999999999987

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=313.00  Aligned_cols=259  Identities=17%  Similarity=0.127  Sum_probs=204.8

Q ss_pred             cCCCCCcHhHHHHHhCcHHHHHHHHHcCC----------CCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 039300           44 RDIEGNTPLHNVVTKKHKRVIRILVEKDS----------APSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATR  113 (534)
Q Consensus        44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~----------~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~  113 (534)
                      ...+|.|+||+|+..|+.+.+..++..++          +.....|..|.||||+|+..|+.+++++|++.+++ ++..+
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~   89 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIIT   89 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEEC
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcC
Confidence            34679999999999999877777665532          23345788999999999999999999999999987 66667


Q ss_pred             CCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhccc
Q 039300          114 LPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR  193 (534)
Q Consensus       114 ~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  193 (534)
                      . .|.||||+|+..|+.++         ++.|++.    +.+++..|..|.||||+|+..|+.+++++|++.|+++.  .
T Consensus        90 ~-~g~t~L~~A~~~g~~~~---------v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~  153 (285)
T 3d9h_A           90 A-DHVSPLHEACLGGHLSC---------VKILLKH----GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--P  153 (285)
T ss_dssp             T-TCCCHHHHHHHTTCHHH---------HHHHHHT----TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--C
T ss_pred             C-CCCCHHHHHHHCCcHHH---------HHHHHHC----CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--C
Confidence            6 89999999999999999         8888875    36788999999999999999999999999999999865  3


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300          194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL  273 (534)
Q Consensus       194 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~  273 (534)
                      +..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.+|+.+++++|++.+++   ++ .|..|+||||+
T Consensus       154 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-~~~~g~t~L~~  228 (285)
T 3d9h_A          154 ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-QGKGQDSPLHA  228 (285)
T ss_dssp             SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-CCBTTBCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-CCCCCCCHHHH
Confidence            45699999999999999999999999998 899999999999999999999999999999886   66 48999999999


Q ss_pred             HHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHH-hhhc
Q 039300          274 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTA-YAKR  336 (534)
Q Consensus       274 A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~-ga~~  336 (534)
                      |+..++.+++++|+++ |+|++.+|.  .|+||+++|..         +..++++|+++ |++.
T Consensus       229 A~~~~~~~~v~~Ll~~-gad~~~~d~--~g~t~l~~A~~---------~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          229 VVRTASEELACLLMDF-GADTQAKNA--EGKRPVELVPP---------ESPLAQLFLEREGASL  280 (285)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCGGGGSCT---------TSHHHHHHHHHC----
T ss_pred             HHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHhcC---------ccHHHHHHHHhhccCC
Confidence            9999999999999998 899999999  99999999985         24677888887 5554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-39  Score=308.18  Aligned_cols=231  Identities=19%  Similarity=0.240  Sum_probs=180.9

Q ss_pred             hcccCCCCCcHhHHHHHhC-------------cHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300           41 FGMRDIEGNTPLHNVVTKK-------------HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        41 l~~~d~~g~TpLh~A~~~g-------------~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      ++.+|.+|.||||+|+..|             +.+++++|+++|+++....|..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4568999999999999987             899999999999999877899999999999999999999999999987


Q ss_pred             CcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhch
Q 039300          108 SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK  187 (534)
Q Consensus       108 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  187 (534)
                       ++..+. .|.||||+|+..++.++         ++.+++...   ..++..+..|.||||+|+..|+.+++++|++.|+
T Consensus        83 -~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (253)
T 1yyh_A           83 -ANIQDN-MGRTPLHAAVSADAQGV---------FQILIRNRA---TDLDARMHDGTTPLILAARLAVEGMLEDLINSHA  148 (253)
T ss_dssp             -TTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHSTT---SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred             -CCCCCC-CCCCHHHHHHHcCCHHH---------HHHHHHcCC---CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence             566666 89999999999999999         888888654   4688899999999999999999999999999999


Q ss_pred             hhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCC
Q 039300          188 QLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNG  267 (534)
Q Consensus       188 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g  267 (534)
                      ++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|+++|++   ++.+|..|
T Consensus       149 ~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g  223 (253)
T 1yyh_A          149 DVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMD  223 (253)
T ss_dssp             CTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccCC
Confidence            865 6788999999999999999999999999999 899999999999999999999999999999987   89999999


Q ss_pred             CcHHHHHHhcCChhHHHHhhhCc
Q 039300          268 NTSLHLAAMGLHSDVVFTLSRHK  290 (534)
Q Consensus       268 ~t~Lh~A~~~~~~~~v~~Ll~~~  290 (534)
                      +||||+|+.+|+.+++++|....
T Consensus       224 ~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          224 RLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHHh
Confidence            99999999999999999998763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-38  Score=316.60  Aligned_cols=280  Identities=19%  Similarity=0.204  Sum_probs=222.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||+||..|+.++|++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus        57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~  122 (351)
T 3utm_A           57 RKSTPLHLAAGYNRVRIVQLLLQHGADVH-------------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDL  122 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCC
Confidence            48999999999999999999999999887             488999999999999999999999999998885 6789


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHH---------HHHHHHHhCC
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQF---------IDIMVKILGT  151 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~---------~~~ll~~~~~  151 (534)
                      .|.||||+|+..|+.+++++|++++++ ++..+. .|.++++.++..+..+..........         ...+... ..
T Consensus       123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  199 (351)
T 3utm_A          123 WQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNC-HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT-LA  199 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-TT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccC-CCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHH-HH
Confidence            999999999999999999999999988 555665 89999999876655444211100000         1111111 11


Q ss_pred             ChhhhhcccCCCCcHHHHHHhC---CCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc
Q 039300          152 NKDLINRLDWHQRNPLHYAAAS---GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD  228 (534)
Q Consensus       152 ~~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d  228 (534)
                      ........+..|.||||+|+..   +..+++++|++.|+++. .+|..|.||||+|+..|+.+++++|++++++ ++.+|
T Consensus       200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d  277 (351)
T 3utm_A          200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALD  277 (351)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcC
Confidence            1223344677899999999999   56899999999999865 6788999999999999999999999999999 89999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHH
Q 039300          229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLE  308 (534)
Q Consensus       229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~  308 (534)
                      ..|+||||+|+.+|+.+++++|+++|++   ++.+|..|+||+|+|    ..+++++|.+...    ....  .+.+++.
T Consensus       278 ~~g~t~L~~A~~~~~~~~v~~Ll~~gad---~~~~~~~g~tal~~a----~~~~~~~l~~~~~----~~~~--~~~~~l~  344 (351)
T 3utm_A          278 SLGQTALHRAALAGHLQTCRLLLSYGSD---PSIISLQGFTAAQMG----NEAVQQILSESTP----MRTS--DVDYRLL  344 (351)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHS----CHHHHHHHHHC-------------------
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCChhhhh----hHHHHHHHHhccc----cccC--cceeehh
Confidence            9999999999999999999999999987   899999999999998    5678888887643    2233  5667777


Q ss_pred             HhHh
Q 039300          309 IDEM  312 (534)
Q Consensus       309 ~a~~  312 (534)
                      .|..
T Consensus       345 ~A~~  348 (351)
T 3utm_A          345 EASK  348 (351)
T ss_dssp             ----
T ss_pred             hhhc
Confidence            6665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-40  Score=327.43  Aligned_cols=299  Identities=20%  Similarity=0.224  Sum_probs=223.4

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccC----------chhhhh-hhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAG----------SASVLE-TLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDS   72 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~----------~~~~~~-~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~   72 (534)
                      .+|+.|+..|+.+.++.++++....+...          .....+ .....+|..|.||||.|+..++ +++++|+..  
T Consensus        39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--  115 (373)
T 2fo1_E           39 HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE--  115 (373)
T ss_dssp             -------------------------------------------------------CCCHHHHHHHSSS-CCCSCCSTT--
T ss_pred             cccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhccc--
Confidence            46778888888888888887765443110          000011 1234578899999999999655 888888764  


Q ss_pred             CCCcCCc-cCCCcHHHHHHHcCcHHHHHHHH--------hcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHH
Q 039300           73 APSSYIN-KAYQTPLSIAIDVRLNDIACFII--------DKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFID  143 (534)
Q Consensus        73 ~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~  143 (534)
                      +++ ..| ..|.||||+|+..|+.+++++|+        +.|++ ++..+. .|.||||+|+..|+.++         ++
T Consensus       116 ~~n-~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~-~g~TpL~~A~~~g~~~i---------v~  183 (373)
T 2fo1_E          116 SVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDC-DENTPLMLAVLARRRRL---------VA  183 (373)
T ss_dssp             TTT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCT-TSCCHHHHHHHHTCHHH---------HH
T ss_pred             ccc-ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCC-CCCCHHHHHHHcChHHH---------HH
Confidence            333 344 78999999999999998888876        67776 677776 99999999999999999         88


Q ss_pred             HHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhc---hhhhcccCCCCCcHHHHHHHcC---cHHHHHHHH
Q 039300          144 IMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEAS---KQLAYKRDCNGATPLHLAAENG---ELKVLKLLI  217 (534)
Q Consensus       144 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll  217 (534)
                      .|++.    +.+++..|..|.||||+|+..|+.+++++|++.+   .++ +..|..|.||||+|+..+   +.+++++|+
T Consensus       184 ~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          184 YLMKA----GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLV  258 (373)
T ss_dssp             HHHHT----TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             HHHHC----CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence            88875    3678889999999999999999999999999998   444 467899999999999998   899999999


Q ss_pred             HhCCCcccc--------ccCCCCcHHHHHHhcCCHHHHHHHHhCC-cccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300          218 NKYPDAIEI--------RDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR  288 (534)
Q Consensus       218 ~~~~~~~~~--------~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  288 (534)
                      +.+++ ++.        .|..|+||||+|+..|+.+++++|++.+ .+   +|.+|.+|+||||+|+..|+.+++++|++
T Consensus       259 ~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~  334 (373)
T 2fo1_E          259 EKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ  334 (373)
T ss_dssp             HHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99988 554        6779999999999999999999999876 55   89999999999999999999999999999


Q ss_pred             CcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300          289 HKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       289 ~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                      + |++++.+|.  .|.|||++|..       ....+++++|.++++++
T Consensus       335 ~-gad~~~~d~--~g~t~l~~A~~-------~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          335 Q-GASVEAVDA--TDHTARQLAQA-------NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             T-TCCSSCCCS--SSCCHHHHHHH-------TTCHHHHHHHHTTC---
T ss_pred             c-CCCccCCCC--CCCCHHHHHHH-------cCCHHHHHHHHhcCccc
Confidence            8 899999999  99999999998       45678899999888753

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.8e-38  Score=298.88  Aligned_cols=225  Identities=23%  Similarity=0.303  Sum_probs=180.6

Q ss_pred             CCCCHHHHHHhcC-------------CHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHH
Q 039300            1 MDETPLHIAARIG-------------DHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRIL   67 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g-------------~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~L   67 (534)
                      .|+||||+||..|             +.+++++|++.|++++.            ..|..|.||||+|+..|+.++|++|
T Consensus         9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~~~v~~L   76 (253)
T 1yyh_A            9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRSDAAKRL   76 (253)
T ss_dssp             -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc------------ccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            4899999999988             89999999999998763            3689999999999999999999999


Q ss_pred             HHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHH
Q 039300           68 VEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVK  147 (534)
Q Consensus        68 l~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~  147 (534)
                      +++|+++. ..|..|.||||+|+..|+.+++++|+++++...+..+. .|.||||+|+..++.++         ++.+++
T Consensus        77 l~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~  145 (253)
T 1yyh_A           77 LEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGM---------LEDLIN  145 (253)
T ss_dssp             HHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSH---------HHHHHH
T ss_pred             HHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHH---------HHHHHH
Confidence            99999885 67899999999999999999999999999866777776 89999999999999999         888887


Q ss_pred             HhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccc
Q 039300          148 ILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIR  227 (534)
Q Consensus       148 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  227 (534)
                      .    +.+++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..|+.+++++|+++|++ ++.+
T Consensus       146 ~----g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~  219 (253)
T 1yyh_A          146 S----HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAKVLLDHFAN-RDIT  219 (253)
T ss_dssp             T----TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCC
T ss_pred             c----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccc
Confidence            5    36788999999999999999999999999999999865 6789999999999999999999999999999 8999


Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300          228 DNSDRSILHVAAKHGNWNIVSFILKSP  254 (534)
Q Consensus       228 d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  254 (534)
                      |..|+||+|+|+++|+.+++++|....
T Consensus       220 d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          220 DHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.9e-38  Score=293.74  Aligned_cols=224  Identities=23%  Similarity=0.289  Sum_probs=186.5

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcC--CCCCcCC
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKD--SAPSSYI   78 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g--~~~~~~~   78 (534)
                      ||+||||.||+.|+.++|++|++.|++...            .+|..|.||||+|+..|+.+++++|+++|  .++....
T Consensus         1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~   68 (228)
T 2dzn_A            1 MSNYPLHQACMENEFFKVQELLHSKPSLLL------------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP   68 (228)
T ss_dssp             --CCHHHHHHHTTCHHHHHHHHHHCGGGTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCC
T ss_pred             CCccHHHHHHHhCCHHHHHHHHhcCccccc------------cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccC
Confidence            699999999999999999999999876542            47889999999999999999999999999  5554446


Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc
Q 039300           79 NKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR  158 (534)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~  158 (534)
                      +..|.||||+|+..|+.+++++|++++..                                              .+++.
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------------------------------------~~~~~  102 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLK----------------------------------------------PDLNK  102 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSC----------------------------------------------CCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCC----------------------------------------------ccccc
Confidence            78899999999999999999999988743                                              12344


Q ss_pred             ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300          159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA  238 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  238 (534)
                      .+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|
T Consensus       103 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A  181 (228)
T 2dzn_A          103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA  181 (228)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHH
T ss_pred             CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHH
Confidence            56678899999999999999999999988755 67888999999999999999999999888444888889999999999


Q ss_pred             HhcCCHHHHHHHH-hCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          239 AKHGNWNIVSFIL-KSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       239 ~~~~~~~~~~~Ll-~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      +..|+.+++++|+ +.|++   ++.+|.+|.||||+|+..   +++++|+++
T Consensus       182 ~~~~~~~~v~~Ll~~~ga~---~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          182 LAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHTTCHHHHHHHHHHHCCC---SCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HHcCCHHHHHHHHHhcCCC---CCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            9999999999999 77776   888889999999998643   566666553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.6e-38  Score=298.03  Aligned_cols=233  Identities=21%  Similarity=0.238  Sum_probs=205.0

Q ss_pred             hcccCCCCCcHhHHHHHhCcHHHHHHHHH----cCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 039300           41 FGMRDIEGNTPLHNVVTKKHKRVIRILVE----KDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD  116 (534)
Q Consensus        41 l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~----~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  116 (534)
                      ++.+|.+|+||||+|+.+|+.+++++|++    .|.++ +..|..|.||||+|+..|+.+++++|+++|++ ++..+. .
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~   78 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDR-H   78 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-T
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCC-C
Confidence            34689999999999999999999999998    56666 46789999999999999999999999999987 566665 8


Q ss_pred             CchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCC
Q 039300          117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN  196 (534)
Q Consensus       117 g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  196 (534)
                      |.||||+|+..++.++         ++.+++........++..|..|.||||+|+..|+.+++++|++.|+++....+..
T Consensus        79 g~t~l~~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  149 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTC---------LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS  149 (241)
T ss_dssp             SCCHHHHHHHTTCHHH---------HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTT
T ss_pred             CCCHHHHHHHcCCHHH---------HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC
Confidence            9999999999999999         9999998765555788889999999999999999999999999999876443378


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300          197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM  276 (534)
Q Consensus       197 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~  276 (534)
                      |.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+.
T Consensus       150 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          150 GRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSS
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCcCCCCCCHHHHHHh
Confidence            99999999999999999999999998 899999999999999999999999999999887   89999999999999999


Q ss_pred             cCChhHHHHhhhC
Q 039300          277 GLHSDVVFTLSRH  289 (534)
Q Consensus       277 ~~~~~~v~~Ll~~  289 (534)
                      .|+.++++.|.+.
T Consensus       226 ~~~~~i~~~l~~~  238 (241)
T 1k1a_A          226 RRVIDILRGKATR  238 (241)
T ss_dssp             HHHHHHHTC----
T ss_pred             cCcHHHHhhhccC
Confidence            9999999999876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.1e-38  Score=291.43  Aligned_cols=223  Identities=22%  Similarity=0.280  Sum_probs=193.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .++||||.||+.|+.+.+++|++.++..            ++.+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~   71 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSL------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDD   71 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGG------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCT
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhh------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCC
Confidence            3679999999999999999999886542            33578899999999999999999999999998775 6688


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|++++++                                                ++..|
T Consensus        72 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~  103 (231)
T 3aji_A           72 AGWSPLHIAASAGXDEIVKALLVKGAH------------------------------------------------VNAVN  103 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCC
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHcCCC------------------------------------------------CCCCC
Confidence            899999999999999999999987764                                                23345


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+.
T Consensus       104 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  181 (231)
T 3aji_A          104 QNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACD  181 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHH
Confidence            568899999999999999999999988765 6788899999999999999999999999888 88899999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      .|+.+++++|+++|++   ++.+|..|.||||+|+..++.+++++|.++
T Consensus       182 ~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          182 EERVEEAKFLVTQGAS---IYIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             TTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            9999999999999877   888999999999999998888999988876

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.2e-38  Score=304.53  Aligned_cols=231  Identities=17%  Similarity=0.149  Sum_probs=169.5

Q ss_pred             hcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCC--CcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCc
Q 039300           41 FGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAP--SSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL  118 (534)
Q Consensus        41 l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~  118 (534)
                      ++.+|..|+||||+|+..|+.++|++|++.|++.  .+..+..|.||||+|+..|+.+++++|+++|++ ++..+. .|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~   79 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAER-GGH   79 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCT-TSC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCC-CCC
Confidence            4568999999999999999999999999998873  457789999999999999999999999999998 566666 899


Q ss_pred             hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300          119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGA  198 (534)
Q Consensus       119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  198 (534)
                      ||||+|+..++.++         ++.+++...    .......  .+                ++..+..   .....+.
T Consensus        80 tpL~~A~~~~~~~~---------v~~Ll~~~~----~~~~~~~--~~----------------~~~~~~~---~~~~~~~  125 (282)
T 1oy3_D           80 TALHLACRVRAHTC---------ACVLLQPRP----SHPRDAS--DT----------------YLTQSQD---CTPDTSH  125 (282)
T ss_dssp             CHHHHHTTTTCHHH---------HHHHSSSCC----SSCCCC--------------------------------------
T ss_pred             CHHHHHHHcCCcch---------hHhhhccCC----CCchhhH--HH----------------Hhhcccc---cCcchhc
Confidence            99999999999988         666665432    1111100  00                1111111   1234567


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCC-CCcHHHHHHhc
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRN-GNTSLHLAAMG  277 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~-g~t~Lh~A~~~  277 (534)
                      ++++.++..+.......++......++..|..|+||||+|+..|+.+++++|++.|++   ++.++.. |+||||+|+..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~  202 (282)
T 1oy3_D          126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEA  202 (282)
T ss_dssp             ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHT
T ss_pred             chhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHc
Confidence            7888777766555444443333333888999999999999999999999999999877   8888854 99999999999


Q ss_pred             CChhHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300          278 LHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT  313 (534)
Q Consensus       278 ~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~  313 (534)
                      |+.+++++|+++ |++++.+|.  .|.|||++|...
T Consensus       203 ~~~~~v~~Ll~~-gad~~~~d~--~g~tpL~~A~~~  235 (282)
T 1oy3_D          203 QAASVLELLLKA-GADPTARMY--GGRTPLGSALLR  235 (282)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHTS
T ss_pred             CCHHHHHHHHHc-CCCCccccc--CCCCHHHHHHHc
Confidence            999999999998 899999999  999999999874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-37  Score=290.80  Aligned_cols=223  Identities=21%  Similarity=0.299  Sum_probs=150.3

Q ss_pred             hcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchH
Q 039300           41 FGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL  120 (534)
Q Consensus        41 l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~  120 (534)
                      ++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..|+.+++++|++++++ ++..+. .|.||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~t~   80 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDA-EGSTC   80 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCT-TSCCH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCC-CCCcH
Confidence            44689999999999999999999999999998875 6788999999999999999999999998876 344443 55666


Q ss_pred             HHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcH
Q 039300          121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP  200 (534)
Q Consensus       121 L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  200 (534)
                      ||.|+..++.++         ++.+++..+   ..++..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||
T Consensus        81 L~~A~~~~~~~~---------~~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~  147 (237)
T 3b7b_A           81 LHLAAKKGHYEV---------VQYLLSNGQ---MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENIC  147 (237)
T ss_dssp             HHHHHHTTCHHH---------HHHHHTTTC---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HHHHHHcCCHHH---------HHHHHhCCC---CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCH
Confidence            666666666555         554444432   3445555556666666666666666666666655543 445556666


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300          201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS  280 (534)
Q Consensus       201 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  280 (534)
                      ||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|++   ++.+|.+|+||||+|+.+++.
T Consensus       148 L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          148 LHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             HHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHSCTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC---CCccCCCCCCHHHHHHHHHHH
Confidence            6666666666666666665555 555555566666666666666666666655554   555556666666666655555


Q ss_pred             hHH
Q 039300          281 DVV  283 (534)
Q Consensus       281 ~~v  283 (534)
                      +.+
T Consensus       224 ~~~  226 (237)
T 3b7b_A          224 WSA  226 (237)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.1e-37  Score=287.49  Aligned_cols=228  Identities=23%  Similarity=0.290  Sum_probs=208.5

Q ss_pred             CCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHH
Q 039300           45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF  124 (534)
Q Consensus        45 d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A  124 (534)
                      +..++||||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.+++                 
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----------------   65 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----------------   65 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------------
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-----------------
Confidence            456889999999999999999999998777677888999999999999999999999988764                 


Q ss_pred             HHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHH
Q 039300          125 VMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA  204 (534)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  204 (534)
                                                     ++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||.|
T Consensus        66 -------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A  113 (231)
T 3aji_A           66 -------------------------------VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYA  113 (231)
T ss_dssp             -------------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             -------------------------------CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence                                           23345678999999999999999999999999865 6788999999999


Q ss_pred             HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHH
Q 039300          205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVF  284 (534)
Q Consensus       205 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  284 (534)
                      +..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.+++   ++.+|..|+||||+|+..++.++++
T Consensus       114 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          114 ASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCCHHHHHHHCCCHHHHH
Confidence            999999999999999998 889999999999999999999999999999887   8999999999999999999999999


Q ss_pred             HhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhh
Q 039300          285 TLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAK  335 (534)
Q Consensus       285 ~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~  335 (534)
                      +|+++ |++++.+|.  .|.||+++|..       .....+.++|.++|++
T Consensus       190 ~Ll~~-ga~~~~~~~--~g~t~l~~A~~-------~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          190 FLVTQ-GASIYIENK--EEKTPLQVAKG-------GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHT-TCCSCCCCT--TSCCHHHHSCH-------HHHHHHHHHHHHHHHC
T ss_pred             HHHHC-CCCCCCCCC--CCCCHHHHHHh-------hHHHHHHHHHcccccc
Confidence            99998 899999999  99999999987       6678899999998875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.1e-37  Score=287.94  Aligned_cols=212  Identities=21%  Similarity=0.305  Sum_probs=193.5

Q ss_pred             CCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300           48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR  127 (534)
Q Consensus        48 g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~  127 (534)
                      |+||||.|+..|+.+++++|++.|++.....|..|.||||+|+..|+.+++++|++++++.                   
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-------------------   62 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-------------------   62 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC-------------------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc-------------------
Confidence            7899999999999999999999998887778999999999999999999999999988541                   


Q ss_pred             cCcchhhhhhhHHHHHHHHHHhCCChhhhhc-ccCCCCcHHHHHHhCCCHHHHHHHHhhc--hhhhcccCCCCCcHHHHH
Q 039300          128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINR-LDWHQRNPLHYAAASGNVQMVQRLLEAS--KQLAYKRDCNGATPLHLA  204 (534)
Q Consensus       128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A  204 (534)
                                                 .++. .+..|.||||+|+..|+.+++++|++.|  .+.. ..+..|.||||.|
T Consensus        63 ---------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A  114 (228)
T 2dzn_A           63 ---------------------------NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLA  114 (228)
T ss_dssp             ---------------------------CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHH
T ss_pred             ---------------------------cccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHH
Confidence                                       1222 5667999999999999999999999998  5544 6788999999999


Q ss_pred             HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCC-cccccccccCCCCCcHHHHHHhcCChhHH
Q 039300          205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLIDRNGNTSLHLAAMGLHSDVV  283 (534)
Q Consensus       205 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  283 (534)
                      +..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.+ .+   ++.+|..|+||||+|+..|+.+++
T Consensus       115 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~d~~g~t~L~~A~~~~~~~~v  190 (228)
T 2dzn_A          115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHALAEGHGDAA  190 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC---SCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc---ccCcCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999998 8999999999999999999999999999998 55   899999999999999999999999


Q ss_pred             HHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          284 FTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       284 ~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      ++|++..|+|++.+|.  .|.||+++|..
T Consensus       191 ~~Ll~~~ga~~~~~~~--~g~t~l~~A~~  217 (228)
T 2dzn_A          191 VLLVEKYGAEYDLVDN--KGAKAEDVALN  217 (228)
T ss_dssp             HHHHHHHCCCSCCBCT--TSCBGGGGCSS
T ss_pred             HHHHHhcCCCCCccCC--CCCcHHHHHHH
Confidence            9999555899999999  99999999976

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.7e-37  Score=285.53  Aligned_cols=222  Identities=20%  Similarity=0.233  Sum_probs=162.5

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |.||||.|++.|+.+++++|++.|++++.             +|..|.||||+|+..|+.+++++|+++|++.....+..
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   75 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQ-------------PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL   75 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTC-------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCC-------------CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence            55666666666666666666666665552             55666666666666666666666666666665454555


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      |.||||+|+..|+.+++++|++.+++                                                ++..+.
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~~  107 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGAD------------------------------------------------PSLIDG  107 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCCT
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCC------------------------------------------------CcccCC
Confidence            66666666666666666666665543                                                344556


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc-HHHHHHHHHhCCCccccccC-CCCcHHHHHH
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE-LKVLKLLINKYPDAIEIRDN-SDRSILHVAA  239 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~  239 (534)
                      .|.||||+|+..|+.+++++|++.|+++. ..+..|.||||.|+..++ .+++++|++.+.+ ++..+. .|+||||+|+
T Consensus       108 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~  185 (240)
T 3eu9_A          108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAV  185 (240)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHH
Confidence            67888888888888888888888887754 567788888888886655 7888888888887 666665 7888888888


Q ss_pred             hcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       240 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      .+|+.+++++|+++|++   ++.+|..|+||||+|+..++.+++++|++.
T Consensus       186 ~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          186 LAGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HHTCHHHHHHHHHHTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            88888888888888766   788888888888888888888888888876

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1e-36  Score=285.18  Aligned_cols=222  Identities=20%  Similarity=0.281  Sum_probs=203.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|.||||+||..|+.+++++|+++|++++.             +|..|.||||+|+..|+.+++++|+++|+++. ..+.
T Consensus        10 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~   75 (237)
T 3b7b_A           10 NKRSPLHAAAEAGHVDICHMLVQAGANIDT-------------CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDA   75 (237)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCcCc-------------cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCC
Confidence            489999999999999999999999998874             78899999999999999999999999998875 6788


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|+++++...+..+. .|.||||.|+..++.++         ++.+++..    .+++..|
T Consensus        76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~---------~~~Ll~~g----~~~~~~~  141 (237)
T 3b7b_A           76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDL---------VKLLLSKG----SDINIRD  141 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHH---------HHHHHHTT----CCTTCCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHH---------HHHHHHCC----CCCCccC
Confidence            9999999999999999999999999655677776 89999999999999998         88888753    5688899


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|++.|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus       142 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~  219 (237)
T 3b7b_A          142 NEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASL  219 (237)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCT
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            999999999999999999999999999865 6788999999999999999999999999999 89999999999999999


Q ss_pred             cCCHHHHHHHHh
Q 039300          241 HGNWNIVSFILK  252 (534)
Q Consensus       241 ~~~~~~~~~Ll~  252 (534)
                      +++.+.+..+++
T Consensus       220 ~~~~~~~~~l~~  231 (237)
T 3b7b_A          220 NSQVWSALQMSK  231 (237)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999876666654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4e-37  Score=288.61  Aligned_cols=225  Identities=24%  Similarity=0.330  Sum_probs=200.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHh----cCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMK----YVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSS   76 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~   76 (534)
                      .|+||||+||+.|+.+++++|++    .|.+++             .+|..|.||||+|+..|+.+++++|++.|+++. 
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-   73 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-   73 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------cccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-
Confidence            48999999999999999999998    566655             589999999999999999999999999998885 


Q ss_pred             CCccCCCcHHHHHHHcCcHHHHHHHHhcCCC---CcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCCh
Q 039300           77 YINKAYQTPLSIAIDVRLNDIACFIIDKSSE---SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNK  153 (534)
Q Consensus        77 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  153 (534)
                      ..+..|.||||+|+..|+.+++++|++.++.   ..+..+. .|.||||.|+..++.++         ++.+++..    
T Consensus        74 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~---------~~~Ll~~g----  139 (241)
T 1k1a_A           74 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQET---------VQLLLERG----  139 (241)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHTT----
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHH---------HHHHHHcC----
Confidence            6788999999999999999999999999873   3555565 89999999999999998         88888763    


Q ss_pred             hhhhccc-CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC
Q 039300          154 DLINRLD-WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDR  232 (534)
Q Consensus       154 ~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  232 (534)
                      .+++..+ ..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus       140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~  217 (241)
T 1k1a_A          140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHND  217 (241)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCC
Confidence            5677777 789999999999999999999999999865 6789999999999999999999999999999 899999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCc
Q 039300          233 SILHVAAKHGNWNIVSFILKSPE  255 (534)
Q Consensus       233 t~Lh~A~~~~~~~~~~~Ll~~~~  255 (534)
                      ||||+|+..|+.++++.|.+.++
T Consensus       218 tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          218 TPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CTTTTCSSHHHHHHHTC------
T ss_pred             CHHHHHHhcCcHHHHhhhccCCC
Confidence            99999999999999999987653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=295.68  Aligned_cols=223  Identities=20%  Similarity=0.260  Sum_probs=160.6

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcH-HHHHHHHHcCCCCCcCCccC
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK-RVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~-e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      .|||+.||+.|+.++|++|++.|++....     ....++..|..|.||||.|+..++. +++++|++.|++++ ..|.+
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-----~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d~~   85 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLED-----AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTSQD   85 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CCCCTT-CCCTT
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCccccc-----ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcCCC
Confidence            47999999999999999999999875421     1234556888999999999988876 58899999999985 67999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      |.||||+|+..|+.+++++|++.+++                                                ++..+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~------------------------------------------------~~~~~~  117 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGAN------------------------------------------------AGARNA  117 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCC------------------------------------------------TTCCCT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCC------------------------------------------------cCccCC
Confidence            99999999999999999999998775                                                233445


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  241 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  241 (534)
                      .|.||+|.|+..++.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+
T Consensus       118 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~  195 (269)
T 4b93_B          118 DQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIE  195 (269)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHT
T ss_pred             CCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHc
Confidence            67888888888889999999999988765 6788999999999999999999999999988 888999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHh
Q 039300          242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL  286 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  286 (534)
                      |+.+++++|+++|++   +|.+|.+|+||||+|+++++  ++++|
T Consensus       196 g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          196 KHVFVVELLLLHGAS---VQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             TCHHHHHHHHHTTCC---SCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             CCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            999999999999887   88999999999999987664  44443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-37  Score=300.01  Aligned_cols=246  Identities=22%  Similarity=0.275  Sum_probs=199.0

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |.||||.||..|+.++|++|+++|++++.             +|..|.||||+|+..|+.++|++|+++|++++ ..|..
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~  105 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINY-------------ANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNE  105 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTC-------------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcc-------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCC
Confidence            57899999999999999999999998773             78899999999999999999999999998885 67889


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      |.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++         ++.++....   ..++..+.
T Consensus       106 g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~-~g~t~l~~A~~~~~~~~---------~~~ll~~~~---~~~~~~~~  171 (299)
T 1s70_B          106 GWIPLHAAASCGYLDIAEYLISQGAH-VGAVNS-EGDTPLDIAEEEAMEEL---------LQNEVNRQG---VDIEAARK  171 (299)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHCCSHHHHHH---------HHHHHHHHT---CCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCC-CCCCHHHHHHhcchHHH---------HHHHHhhcC---CCchhhhh
Confidence            99999999999999999999999987 566665 89999999999888877         766666544   23333322


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  241 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  241 (534)
                      .+.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.+
T Consensus       172 ~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~  242 (299)
T 1s70_B          172 EEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHW  242 (299)
T ss_dssp             HHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred             hhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhc
Confidence            2333332        2345566666655556777888999999999999999999988888 788888899999999999


Q ss_pred             CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300          242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR  288 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  288 (534)
                      |+.+++++|+++|++   ++.+|..|+||||+|+... .+.++.+++
T Consensus       243 ~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~-~~~l~~l~~  285 (299)
T 1s70_B          243 GKEEACRILVENLCD---MEAVNKVGQTAFDVADEDI-LGYLEELQK  285 (299)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCTTTSCCSGG-GHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence            999999999998876   8888899999999986533 344444444

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=291.41  Aligned_cols=222  Identities=23%  Similarity=0.291  Sum_probs=169.8

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH  122 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~  122 (534)
                      .+|..+.+||+.||.+|+.++|++|++.|++.....+                           ...+..+. .+.|||+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~-~~~t~L~   57 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADP-EFCHPLC   57 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCc-cCCCHHH
Confidence            3677788899999999999999999988865421100                           00111122 4555565


Q ss_pred             HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHH
Q 039300          123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH  202 (534)
Q Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  202 (534)
                      .|+..++.+.            +++.+.+.|.++|..|.+|+||||+|+..|+.+++++|++.|+++. ..+..|.||+|
T Consensus        58 ~a~~~~~~~~------------~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~  124 (269)
T 4b93_B           58 QCPKCAPAQK------------RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLH  124 (269)
T ss_dssp             -----------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHH
T ss_pred             HHHHhCCHHH------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccc
Confidence            5555444221            2333334446678888899999999999999999999999999865 67889999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhH
Q 039300          203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDV  282 (534)
Q Consensus       203 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  282 (534)
                      .|+..++.++++.|++.+++ ++.+|..|+||||+|+.+|+.+++++|++.|++   +|.+|..|+||||+|+..|+.++
T Consensus       125 ~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~~~~  200 (269)
T 4b93_B          125 LACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFV  200 (269)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCccccCCCcHHHHHHHcCCHHH
Confidence            99999999999999999999 899999999999999999999999999999887   99999999999999999999999


Q ss_pred             HHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          283 VFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       283 v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +++|+++ |+|++.+|.  .|+|||++|.+
T Consensus       201 v~~Ll~~-Gad~~~~d~--~G~TpL~~A~~  227 (269)
T 4b93_B          201 VELLLLH-GASVQVLNK--RQRTAVDCAEQ  227 (269)
T ss_dssp             HHHHHHT-TCCSCCCCT--TSCCSGGGSCT
T ss_pred             HHHHHHC-CCCCCCcCC--CCCCHHHHHHh
Confidence            9999998 899999999  99999999986

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.9e-36  Score=300.07  Aligned_cols=253  Identities=18%  Similarity=0.223  Sum_probs=197.0

Q ss_pred             cccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHH
Q 039300           42 GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL  121 (534)
Q Consensus        42 ~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  121 (534)
                      +.+|.+|.||||+|+..|+.++|++|+++|++++ ..|..|.||||+|+..|+.+++++|++++++. +  .. +|.|||
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~--~~-~g~t~L   88 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVH-S--LW-HGQKPI   88 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-C--CB-TTBCHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-c--cc-CCCCHH
Confidence            3578899999999999999999999999998885 67999999999999999999999999999842 1  11 445555


Q ss_pred             HHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHH
Q 039300          122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL  201 (534)
Q Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  201 (534)
                      |+|+..++.++         ++.|++.....+..++.          .........       ......+..|..|.|||
T Consensus        89 ~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~----------~~~~~~~~~-------~~~~~~~~~~~~g~t~L  142 (364)
T 3ljn_A           89 HLAVMANKTDL---------VVALVEGAKERGQMPES----------LLNECDERE-------VNEIGSHVKHCKGQTAL  142 (364)
T ss_dssp             HHHHHTTCHHH---------HHHHHHHHHHHTCCHHH----------HHTCCCCCC-------EEEETTEEEEESCCCHH
T ss_pred             HHHHHcCCHHH---------HHHHHHhccccCCCHHH----------HHhhcchHh-------hhhhccccCCCCCCCHH
Confidence            55555555554         44444432110010000          000000000       00000113677899999


Q ss_pred             HHHHHcC--cHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcc--cccccccCCCCCcHHHHHHhc
Q 039300          202 HLAAENG--ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM--ENLINLIDRNGNTSLHLAAMG  277 (534)
Q Consensus       202 ~~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~--~~~~~~~d~~g~t~Lh~A~~~  277 (534)
                      |+|+..|  +.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++  ...+|.+|..|+||||+|+..
T Consensus       143 ~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~  221 (364)
T 3ljn_A          143 HWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI  221 (364)
T ss_dssp             HHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT
T ss_pred             HHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHc
Confidence            9999999  99999999999998 899999999999999999999999999998654  223788999999999999999


Q ss_pred             CChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300          278 LHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       278 ~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                      |+.+++++|+++ |+|++.+|.  .|.|||++|..       ....+++++|+++|+..
T Consensus       222 g~~~~v~~Ll~~-gad~~~~d~--~g~tpL~~A~~-------~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          222 NWEDVAMRFVEM-GIDVNMEDN--EHTVPLYLSVR-------AAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             TCHHHHHHHHTT-TCCTTCCCT--TSCCHHHHHHH-------TCCHHHHHHHHHHSCHH
T ss_pred             CCHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHHH-------hChHHHHHHHHHcCCch
Confidence            999999999998 899999999  99999999998       45678999999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-36  Score=294.22  Aligned_cols=272  Identities=14%  Similarity=0.126  Sum_probs=224.5

Q ss_pred             HHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHH
Q 039300            7 HIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPL   86 (534)
Q Consensus         7 h~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL   86 (534)
                      +.+++.|+.+.++.++....++.....    +......+..|.||||.||..|+.++|++|+++|++++ ..|..|.|||
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L   77 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVV----KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTAL   77 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCC----CCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccc----cCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHH
Confidence            357888899999999988665443110    11111245678899999999999999999999998875 6789999999


Q ss_pred             HHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcH
Q 039300           87 SIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNP  166 (534)
Q Consensus        87 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tp  166 (534)
                      |+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..|+.++         ++.|++..    .+++..|..|.||
T Consensus        78 ~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~tpL~~A~~~g~~~~---------v~~Ll~~g----~~~~~~~~~g~t~  142 (299)
T 1s70_B           78 HQACIDDNVDMVKFLVENGAN-INQPDN-EGWIPLHAAASCGYLDI---------AEYLISQG----AHVGAVNSEGDTP  142 (299)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHTT----CCTTCCCTTSCCH
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCCCCC-CCCcHHHHHHHcCCHHH---------HHHHHhCC----CCCCCcCCCCCCH
Confidence            999999999999999999987 566666 89999999999999998         88887753    5688889999999


Q ss_pred             HHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHH
Q 039300          167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI  246 (534)
Q Consensus       167 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  246 (534)
                      ||+|+..++.++++.++..........+..+.++++        ..+..++..+.......+..|.||||+|+.+|+.++
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~  214 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV  214 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence            999999999999998887543222222222333332        345566677766566788899999999999999999


Q ss_pred             HHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          247 VSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       247 ~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +++|++.|++   +|.+|.+|+||||+|+..|+.+++++|+++ |+|++.+|.  .|.||+++|.+
T Consensus       215 v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~--~g~t~l~~A~~  274 (299)
T 1s70_B          215 LKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNK--VGQTAFDVADE  274 (299)
T ss_dssp             HHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCTTTSCCS
T ss_pred             HHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH
Confidence            9999999887   899999999999999999999999999998 899999999  99999999976

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-35  Score=285.68  Aligned_cols=225  Identities=12%  Similarity=0.112  Sum_probs=202.2

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH  122 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~  122 (534)
                      .+|..|.||||+|+..|+.++|++|+++|++++..   +|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||
T Consensus        26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~-~g~t~L~  100 (285)
T 3kea_A           26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDD-KGNTALY  100 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCC-TTCCCT-TSCCHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCC-CCCcHHH
Confidence            58999999999999999999999999999887633   599999999999999999999999998 566666 8999999


Q ss_pred             HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCC-CcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHH
Q 039300          123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ-RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL  201 (534)
Q Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  201 (534)
                      +|+..++.++         ++.|++.    +.+++..+..| .||||+|+..|+.+++++|+++|++..  ....|.|||
T Consensus       101 ~A~~~g~~~~---------v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L  165 (285)
T 3kea_A          101 YAVDSGNMQT---------VKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCI  165 (285)
T ss_dssp             HHHHTTCHHH---------HHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHH
T ss_pred             HHHHcCCHHH---------HHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHH
Confidence            9999999999         8888887    36789999999 799999999999999999999998753  122899999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCccccccCCCCcH-HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300          202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSI-LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS  280 (534)
Q Consensus       202 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  280 (534)
                      |+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+.+|+.+++++|+++|++   ++.+|       +.|+..|+.
T Consensus       166 ~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad---~~~~~-------~~a~~~~~~  234 (285)
T 3kea_A          166 HITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN---IYSAN-------LENVLLDDA  234 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC---STTTT-------GGGGTTTCH
T ss_pred             HHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC---CCCCC-------hhhhhcCCH
Confidence            999999999999999999998 89999999998 9999999999999999999887   77776       467889999


Q ss_pred             hHHHHhhhCcccchhhccc
Q 039300          281 DVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       281 ~~v~~Ll~~~~~~~~~~n~  299 (534)
                      +++++|+++ |++++....
T Consensus       235 ~iv~~Ll~~-g~~~~~~~~  252 (285)
T 3kea_A          235 EIAKMIIEK-HVEYKSDSY  252 (285)
T ss_dssp             HHHHHHHHH-HHHHTTCTT
T ss_pred             HHHHHHHHc-CCCCCCccc
Confidence            999999998 777765443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.2e-35  Score=270.31  Aligned_cols=212  Identities=19%  Similarity=0.280  Sum_probs=160.9

Q ss_pred             CCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHc
Q 039300           13 GDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDV   92 (534)
Q Consensus        13 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~   92 (534)
                      |+.+++++|+++|++++.            ..|..|.||||+|+..|+.+++++|+++|+++. ..|..|.||||+|+..
T Consensus         2 g~~~~i~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~   68 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSA   68 (223)
T ss_dssp             ---CCEETTEETTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHHHcCCCccc------------ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHc
Confidence            678889999999988764            358899999999999999999999999998875 6788999999999999


Q ss_pred             CcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHh
Q 039300           93 RLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAA  172 (534)
Q Consensus        93 g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~  172 (534)
                      |+.+++++|+++++...+                                               ..+..|.||||+|+.
T Consensus        69 ~~~~~v~~Ll~~~~~~~~-----------------------------------------------~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           69 DAQGVFQILIRNRATDLD-----------------------------------------------ARMHDGTTPLILAAR  101 (223)
T ss_dssp             TCHHHHHHHHHBTTSCTT-----------------------------------------------CCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCcc-----------------------------------------------cCCCCCCcHHHHHHH
Confidence            999999999998764333                                               334456667777777


Q ss_pred             CCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHh
Q 039300          173 SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK  252 (534)
Q Consensus       173 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~  252 (534)
                      .|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++
T Consensus       102 ~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  179 (223)
T 2f8y_A          102 LAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD  179 (223)
T ss_dssp             HTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence            777777777777766644 5566677777777777777777777777666 66677777777777777777777777777


Q ss_pred             CCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          253 SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       253 ~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      ++++   ++.+|..|.||||+|+..++.+++++|+++
T Consensus       180 ~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          180 HFAN---RDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             TTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCC---CccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            7665   666777777777777777777777777776

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.5e-35  Score=271.23  Aligned_cols=202  Identities=24%  Similarity=0.230  Sum_probs=180.8

Q ss_pred             hCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhh
Q 039300           58 KKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQ  137 (534)
Q Consensus        58 ~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  137 (534)
                      .|+.+++++|+++|+++....|..|.||||+|+..|+.+++++|++++++                              
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------------   50 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD------------------------------   50 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------------
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC------------------------------
Confidence            36788888999999888777788899999999999999999999987664                              


Q ss_pred             hHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHH
Q 039300          138 FLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI  217 (534)
Q Consensus       138 ~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  217 (534)
                                        ++..|..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.++++.|+
T Consensus        51 ------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  112 (223)
T 2f8y_A           51 ------------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI  112 (223)
T ss_dssp             ------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             ------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Confidence                              23456678999999999999999999999998556678899999999999999999999999


Q ss_pred             HhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhc
Q 039300          218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAK  297 (534)
Q Consensus       218 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~  297 (534)
                      +.+++ ++..|..|+||||+|+..|+.+++++|++.+++   ++.+|..|+||||+|+..++.+++++|+++ |++++.+
T Consensus       113 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~  187 (223)
T 2f8y_A          113 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDIT  187 (223)
T ss_dssp             HTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred             HcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccc
Confidence            99998 899999999999999999999999999999877   899999999999999999999999999998 7999999


Q ss_pred             cccCCCCChHHHhHhhh
Q 039300          298 NRSARNNTTLEIDEMTR  314 (534)
Q Consensus       298 n~~~~g~t~l~~a~~~~  314 (534)
                      |.  .|.||+++|....
T Consensus       188 ~~--~g~t~l~~A~~~~  202 (223)
T 2f8y_A          188 DH--MDRLPRDIAQERM  202 (223)
T ss_dssp             CT--TCCCHHHHHHHTT
T ss_pred             cc--cCCCHHHHHHHhc
Confidence            99  9999999998743

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=271.40  Aligned_cols=232  Identities=22%  Similarity=0.229  Sum_probs=205.8

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH  122 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~  122 (534)
                      ..|..|.||||.|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++++++..             
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-------------   69 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-------------   69 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-------------
Confidence            468899999999999999999999999998875 678899999999999999999999999887521             


Q ss_pred             HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHH
Q 039300          123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH  202 (534)
Q Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~  202 (534)
                                                        ...+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||
T Consensus        70 ----------------------------------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~  114 (240)
T 3eu9_A           70 ----------------------------------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIH  114 (240)
T ss_dssp             ----------------------------------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             ----------------------------------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHH
Confidence                                              1123347799999999999999999999999865 67889999999


Q ss_pred             HHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-HHHHHHHHhCCcccccccccCC-CCCcHHHHHHhcCCh
Q 039300          203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-WNIVSFILKSPEMENLINLIDR-NGNTSLHLAAMGLHS  280 (534)
Q Consensus       203 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~~~~Ll~~~~~~~~~~~~d~-~g~t~Lh~A~~~~~~  280 (534)
                      .|+..|+.+++++|++++++ ++..|..|.||||+|+..++ .+++++|++.+.+   ++..+. .|+||||+|+..|+.
T Consensus       115 ~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~---~~~~~~~~g~t~L~~A~~~~~~  190 (240)
T 3eu9_A          115 LAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDKYHKNTALHWAVLAGNT  190 (240)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC---TTCCCTTTCCCHHHHHHHHTCH
T ss_pred             HHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC---cchhhccCCCcHHHHHHHcCCH
Confidence            99999999999999999998 89999999999999997766 8999999999877   888886 999999999999999


Q ss_pred             hHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhcc
Q 039300          281 DVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA  337 (534)
Q Consensus       281 ~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~  337 (534)
                      +++++|+++ |++++.+|.  .|.||+++|..       ....++++.|++++++.+
T Consensus       191 ~~v~~Ll~~-g~~~~~~~~--~g~t~l~~A~~-------~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          191 TVISLLLEA-GANVDAQNI--KGESALDLAKQ-------RKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             HHHHHHHHH-TCCTTCBCT--TSCBHHHHHHH-------TTCHHHHHHHHHHC----
T ss_pred             HHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH-------cCcHHHHHHHHHhhhccC
Confidence            999999998 799999999  99999999998       557789999999987654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=4.7e-34  Score=266.11  Aligned_cols=205  Identities=20%  Similarity=0.261  Sum_probs=139.4

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhc-CccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC----
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKY-VPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS----   75 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~----   75 (534)
                      .|+||||.||+.|+.++|++|++. |++++             .+|..|.||||+|+..|+.+++++|+++|+++.    
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~   68 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-------------QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM   68 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc
Confidence            599999999999999999999998 88877             489999999999999999999999999998753    


Q ss_pred             cCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhh
Q 039300           76 SYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDL  155 (534)
Q Consensus        76 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  155 (534)
                      +..|..|.||||+|+..|+.+++++|++++++ ++..+. .  +.+                            .   ..
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~--~~~----------------------------~---~~  113 (232)
T 2rfa_A           69 TSELYEGQTALHIAVINQNVNLVRALLARGAS-VSARAT-G--SVF----------------------------H---YR  113 (232)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCC-S--GGG----------------------------S---CC
T ss_pred             cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCC-CCcccC-C--cce----------------------------e---ec
Confidence            34577899999999999999999999999987 333221 0  100                            0   11


Q ss_pred             hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHH----HHHHHhCCCcc-----cc
Q 039300          156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVL----KLLINKYPDAI-----EI  226 (534)
Q Consensus       156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v----~~Ll~~~~~~~-----~~  226 (534)
                      .+..|..|.||||+|+..|+.+++++|+++|+++. .+|..|.||||+|+..|+.+++    ++|++.+++..     +.
T Consensus       114 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~  192 (232)
T 2rfa_A          114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELV  192 (232)
T ss_dssp             TTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhcc
Confidence            23344455566666655555555555555555533 4455555555555555555554    55555554421     34


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300          227 RDNSDRSILHVAAKHGNWNIVSFILKSP  254 (534)
Q Consensus       227 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  254 (534)
                      +|..|+||||+|+.+|+.+++++|++++
T Consensus       193 ~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          193 PNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            4444444555444444444444444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.3e-35  Score=273.94  Aligned_cols=215  Identities=21%  Similarity=0.296  Sum_probs=172.4

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCC---CCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCch
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSA---PSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT  119 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t  119 (534)
                      .+|.+|.||||+|+..|+.+++++|++.+..   ..+..+..|.||||+|+..|+.+++++|+++|++            
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------   70 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD------------   70 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC------------
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            4788999999999999999999999998763   2456788999999999999999999999988765            


Q ss_pred             HHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhh-----hcccC
Q 039300          120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQL-----AYKRD  194 (534)
Q Consensus       120 ~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~  194 (534)
                                                          ++..|..|.||||+|+..|+.+++++|++.+++.     ....+
T Consensus        71 ------------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           71 ------------------------------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             ------------------------------------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             ------------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence                                                2334456777777777777777788887777532     34567


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300          195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL  273 (534)
Q Consensus       195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~  273 (534)
                      ..|.||||+|+..|+.+++++|++++++ ++.++. .|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~  190 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQL  190 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccCCCCCHHHH
Confidence            7889999999999999999999999888 777887 899999999999999999999998877   88889999999999


Q ss_pred             HHhcCChhHHHHhhhCcccchh--hccccCCCCChHHHhHh
Q 039300          274 AAMGLHSDVVFTLSRHKSVNIR--AKNRSARNNTTLEIDEM  312 (534)
Q Consensus       274 A~~~~~~~~v~~Ll~~~~~~~~--~~n~~~~g~t~l~~a~~  312 (534)
                      |+..++.+++++|+++ |++..  .++.  +|.||.+.+..
T Consensus       191 A~~~~~~~~~~~Ll~~-ga~~~~~~~~~--~~~~~~~~~~~  228 (236)
T 1ikn_D          191 TWGRPSTRIQQQLGQL-TLENLQMLPES--EDEESYDTESE  228 (236)
T ss_dssp             CTTSSCHHHHHHHHTT-SCGGGSSCCCC--CTTTCCCCC--
T ss_pred             HHccCchHHHHHHHHc-chhhhhcCCcc--chHHHHhhhcc
Confidence            9999999999999988 67766  6666  88898887765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=291.44  Aligned_cols=253  Identities=16%  Similarity=0.100  Sum_probs=198.8

Q ss_pred             cCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcC--------------
Q 039300           12 IGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSY--------------   77 (534)
Q Consensus        12 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~--------------   77 (534)
                      ....++|++|+++|++++.             +|..|.|+++     |+.++|+.|+++|.++...              
T Consensus        29 ~~~~dlv~~ll~~ga~i~~-------------~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~   90 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMK-------------ALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN   90 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEE-------------CBCCCCCCCH-----HHHHHHHHHHHHHHC------------------
T ss_pred             hhcCchHHHHhhCCccccc-------------CCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccccccc
Confidence            3456779999999998884             7888999988     8999999999998765420              


Q ss_pred             --CccCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc-CCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChh
Q 039300           78 --INKAYQTPLSIAIDVRLNDIACFIIDKSSESLNA-TRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKD  154 (534)
Q Consensus        78 --~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  154 (534)
                        ......+.+|.|+..+..+++++|++.+.+ ++. .+. .|.||||+|+..|+.++         ++.|++.    +.
T Consensus        91 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~-~g~TpLh~Aa~~g~~~~---------v~~Ll~~----Ga  155 (327)
T 1sw6_A           91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDE-HGNTPLHWLTSIANLEL---------VKHLVKH----GS  155 (327)
T ss_dssp             -------------CHHHHHHHHHHHCTTSCCC-SCSCCST-TCCCHHHHHHHTTCHHH---------HHHHHHT----TC
T ss_pred             ccccCCccchhHHHHHhhHHHHHHHHHhcCCC-cccccCC-CCCcHHHHHHHcCCHHH---------HHHHHHc----CC
Confidence              111122345788888888999999999887 566 565 89999999999999998         7777775    36


Q ss_pred             hhhcccCCCCcHHHHHHhCCC---HHHHHHHHhhchhhhcccCCCCCcHHHHHHH----cCcHHHHHHHHHh--------
Q 039300          155 LINRLDWHQRNPLHYAAASGN---VQMVQRLLEASKQLAYKRDCNGATPLHLAAE----NGELKVLKLLINK--------  219 (534)
Q Consensus       155 ~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~--------  219 (534)
                      +++..|..|+||||+|+..|+   .++++.|++.+....+.+|..|.||||+|+.    .|+.++++.|++.        
T Consensus       156 d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~  235 (327)
T 1sw6_A          156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK  235 (327)
T ss_dssp             CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc
Confidence            788999999999999999988   6888888888754455789999999999999    8999999999987        


Q ss_pred             ------------CCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          220 ------------YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       220 ------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                                  +.+ ++.+|..|+||||.|+.      +++|++.+     +|.+|.+|+||||+|+..|+.+++++|+
T Consensus       236 ~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~-----~n~~d~~G~TpLh~A~~~g~~~~v~~Ll  303 (327)
T 1sw6_A          236 QNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM-----LNAQDSNGDTCLNIAARLGNISIVDALL  303 (327)
T ss_dssp             GGCCEEEC-----------------CHHHHHCS------HHHHHHHT-----TTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             cchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                        555 88899999999999985      88898862     8999999999999999999999999999


Q ss_pred             hCcccchhhccccCCCCChHHHhHh
Q 039300          288 RHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       288 ~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      ++ |+|++.+|.  .|+|||++|..
T Consensus       304 ~~-Gad~~~~d~--~G~TpL~~A~~  325 (327)
T 1sw6_A          304 DY-GADPFIANK--SGLRPVDFGAG  325 (327)
T ss_dssp             HT-TCCTTCCCT--TSCCGGGGTCC
T ss_pred             Hc-CCCCcccCC--CCCCHHHHHHh
Confidence            98 899999999  99999999976

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.4e-33  Score=271.17  Aligned_cols=236  Identities=17%  Similarity=0.169  Sum_probs=204.8

Q ss_pred             CcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhh
Q 039300           59 KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQF  138 (534)
Q Consensus        59 g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~  138 (534)
                      +..++.++|.+.+  + +..|..|.||||+|+..|+.+++++|+++|++ ++..   +|.||||+|+..|+.++      
T Consensus        11 ~~~~v~~lL~~~~--~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~---~g~t~L~~A~~~g~~~~------   77 (285)
T 3kea_A           11 KSKQLKSFLSSKD--T-FKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL---ENEFPLHQAATLEDTKI------   77 (285)
T ss_dssp             CHHHHHHHHHSTT--T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC---TTCCHHHHHTTSSSCHH------
T ss_pred             CHHHHHHHHHhCC--C-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC---CCCCHHHHHHHcCCHHH------
Confidence            3455566665543  3 46799999999999999999999999999887 3333   58999999999999999      


Q ss_pred             HHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCC-CcHHHHHHHcCcHHHHHHHH
Q 039300          139 LQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNG-ATPLHLAAENGELKVLKLLI  217 (534)
Q Consensus       139 ~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~Ll  217 (534)
                         ++.|++.    +.+++..|..|.||||+|+..|+.+++++|+++|+++. ..+..| .||||+|+..|+.+++++|+
T Consensus        78 ---v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll  149 (285)
T 3kea_A           78 ---VKILLFS----GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFL  149 (285)
T ss_dssp             ---HHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred             ---HHHHHHC----CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence               8888875    36788999999999999999999999999999999876 678888 89999999999999999999


Q ss_pred             HhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcH-HHHHHhcCChhHHHHhhhCcccchh
Q 039300          218 NKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTS-LHLAAMGLHSDVVFTLSRHKSVNIR  295 (534)
Q Consensus       218 ~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~~  295 (534)
                      +++++.   .+. .|+||||+|+..|+.+++++|+++|++   ++.+|..|+|| ||+|+..++.+++++|+++ |++++
T Consensus       150 ~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~  222 (285)
T 3kea_A          150 SEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTS---TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIY  222 (285)
T ss_dssp             TTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH---TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCST
T ss_pred             hCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHcCCC---CCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            999873   233 899999999999999999999999877   89999999998 9999999999999999998 89999


Q ss_pred             hccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          296 AKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       296 ~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      .+|.  .+       ..       ....+++++|+++|++...
T Consensus       223 ~~~~--~a-------~~-------~~~~~iv~~Ll~~g~~~~~  249 (285)
T 3kea_A          223 SANL--EN-------VL-------LDDAEIAKMIIEKHVEYKS  249 (285)
T ss_dssp             TTTG--GG-------GT-------TTCHHHHHHHHHHHHHHTT
T ss_pred             CCCh--hh-------hh-------cCCHHHHHHHHHcCCCCCC
Confidence            8875  21       22       3367899999999998765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-34  Score=282.62  Aligned_cols=246  Identities=13%  Similarity=0.074  Sum_probs=189.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhh-h---cccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETL-F---GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSS   76 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~-l---~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~   76 (534)
                      .|.|+++     |+.++|+.|+++|++++........... .   ..+.....+.+|.|+..+..+++++|++.|++++.
T Consensus        51 ~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~  125 (327)
T 1sw6_A           51 SPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI  125 (327)
T ss_dssp             CCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCS
T ss_pred             CCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCccc
Confidence            3678877     9999999999999886641100000000 0   00111223456999999999999999999999874


Q ss_pred             CCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC---cchhhhhhhHHHHHHHHHHhCCCh
Q 039300           77 YINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQN---YDLSKSMQFLQFIDIMVKILGTNK  153 (534)
Q Consensus        77 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~  153 (534)
                      ..|..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++   .+.         ++.+++.+.   
T Consensus       126 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~-~g~TpLh~A~~~g~~~~~~~---------~~~ll~~~~---  191 (327)
T 1sw6_A          126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDN-MGESCLVKAVKSVNNYDSGT---------FEALLDYLY---  191 (327)
T ss_dssp             CCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCT-TCCCHHHHHHHSSHHHHTTC---------HHHHHHHHG---
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC-CCCCHHHHHHHhcccccHHH---------HHHHHHhhh---
Confidence            4799999999999999999999999999988 677776 99999999999988   677         888888876   


Q ss_pred             hhhhcccCCCCcHHHHHHh----CCCHHHHHHHHhh--------------------chhhhcccCCCCCcHHHHHHHcCc
Q 039300          154 DLINRLDWHQRNPLHYAAA----SGNVQMVQRLLEA--------------------SKQLAYKRDCNGATPLHLAAENGE  209 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~~~~g~tpL~~A~~~g~  209 (534)
                      ..++..|..|+||||+|+.    .|+.+++++|++.                    |+++. .++..|.||||.|+.   
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~g~t~L~~a~~---  267 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN-DKNGERKDSILENLD---  267 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS---
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc-cccccCCChhHHHHH---
Confidence            6789999999999999999    9999999999988                    45543 678899999999985   


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC
Q 039300          210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL  278 (534)
Q Consensus       210 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~  278 (534)
                         +++|+++  + ++.+|..|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+++|
T Consensus       268 ---~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 ---LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTCC--
T ss_pred             ---HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence               8899988  3 788999999999999999999999999999987   9999999999999998764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.6e-34  Score=270.16  Aligned_cols=221  Identities=17%  Similarity=0.218  Sum_probs=190.3

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||+||..|+.+++++|++.+....         ..++.+|..|.||||+|+..|+.++|++|+++|+++. ..|.
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~   76 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDL---------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDF   76 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----C---------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCT
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccH---------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCC
Confidence            48999999999999999999999876421         1344689999999999999999999999999998885 6789


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|++.+++. ..                                         ...++..+
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~-----------------------------------------~~~~~~~~  114 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQSCTTP-HL-----------------------------------------HSILKATN  114 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTT-SS-----------------------------------------SCGGGCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccch-hH-----------------------------------------HHHhhccC
Confidence            9999999999999999999999988751 10                                         02356778


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCC-CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDC-NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA  239 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  239 (534)
                      ..|.||||+|+..|+.+++++|++.|+++. ..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~  192 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTW  192 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHH
Confidence            889999999999999999999999999876 5565 999999999999999999999999998 8999999999999999


Q ss_pred             hcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300          240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM  276 (534)
Q Consensus       240 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~  276 (534)
                      .+|+.+++++|+++|++. ....++.+|.||.+.+..
T Consensus       193 ~~~~~~~~~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          193 GRPSTRIQQQLGQLTLEN-LQMLPESEDEESYDTESE  228 (236)
T ss_dssp             TSSCHHHHHHHHTTSCGG-GSSCCCCCTTTCCCCC--
T ss_pred             ccCchHHHHHHHHcchhh-hhcCCccchHHHHhhhcc
Confidence            999999999999999852 345788999998776553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.9e-32  Score=247.96  Aligned_cols=190  Identities=25%  Similarity=0.304  Sum_probs=106.4

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCc-cccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVP-AVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      |.||||.||..|+.+.++.|++.+. +++             .+|..|.||||+|+..|+.+++++|+++|+++. ..+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~   70 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVD-------------EVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNS   70 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCC
Confidence            5566666666666666666666554 333             355566666666666666666666666665553 4455


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|++.+..                                               .++..|
T Consensus        71 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~  103 (201)
T 3hra_A           71 ISDSPYLYAGAQGRTEILAYMLKHATP-----------------------------------------------DLNKHN  103 (201)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCC-----------------------------------------------CTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCc-----------------------------------------------cccccc
Confidence            566666666666666666666643332                                               123334


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc-----HHHHHHHHHhCCCccccccCCCCcHH
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE-----LKVLKLLINKYPDAIEIRDNSDRSIL  235 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~~~~~~~d~~g~t~L  235 (534)
                      ..|.||||+|+..|+.+++++|++.|....+.+|..|.||||+|+..++     .+++++|+++|++ ++.+|..|+|||
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l  182 (201)
T 3hra_A          104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAM  182 (201)
T ss_dssp             TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-CCccCCCCCCHH
Confidence            4455555555555555555555555522223445555555555555554     5555555555555 455555555555


Q ss_pred             HHHHhcCCHHHHHHHHhC
Q 039300          236 HVAAKHGNWNIVSFILKS  253 (534)
Q Consensus       236 h~A~~~~~~~~~~~Ll~~  253 (534)
                      |+|+.+|+.+++++|+++
T Consensus       183 ~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          183 DYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHcCCHhHHHHHHhc
Confidence            555555555555555544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.9e-32  Score=246.49  Aligned_cols=193  Identities=20%  Similarity=0.285  Sum_probs=172.6

Q ss_pred             CCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHH
Q 039300           46 IEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFV  125 (534)
Q Consensus        46 ~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~  125 (534)
                      ..+.||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++                  
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------   64 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD------------------   64 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------
Confidence            46789999999999999999999988744457788899999999999999999999988765                  


Q ss_pred             HhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHH
Q 039300          126 MRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA  205 (534)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  205 (534)
                                                    ++..|..|.||||+|+..|+.+++++|++.+....+..|..|.||||.|+
T Consensus        65 ------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  114 (201)
T 3hra_A           65 ------------------------------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA  114 (201)
T ss_dssp             ------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH
T ss_pred             ------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH
Confidence                                          23455678899999999999999999996666555678999999999999


Q ss_pred             HcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-----HHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300          206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-----WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS  280 (534)
Q Consensus       206 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  280 (534)
                      ..|+.+++++|++.++..++.+|..|+||||+|+..++     .+++++|++.|++   ++.+|..|+||||+|+..|+.
T Consensus       115 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~  191 (201)
T 3hra_A          115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSIKDNSGRTAMDYANQKGYT  191 (201)
T ss_dssp             HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCH
Confidence            99999999999999955599999999999999999998     9999999999887   899999999999999999999


Q ss_pred             hHHHHhhhC
Q 039300          281 DVVFTLSRH  289 (534)
Q Consensus       281 ~~v~~Ll~~  289 (534)
                      +++++|+++
T Consensus       192 ~~~~~Ll~~  200 (201)
T 3hra_A          192 EISKILAQY  200 (201)
T ss_dssp             HHHHHHHTC
T ss_pred             hHHHHHHhc
Confidence            999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=5.4e-33  Score=263.06  Aligned_cols=98  Identities=15%  Similarity=0.123  Sum_probs=83.3

Q ss_pred             CCCCHHHHHHhcCCHH----HHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHh---CcHHHHHHHHHcCCC
Q 039300            1 MDETPLHIAARIGDHA----IVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTK---KHKRVIRILVEKDSA   73 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~---g~~e~v~~Ll~~g~~   73 (534)
                      +|+||||.||+.|+.+    ++++|++.|++++..         ...+|..|.||||+|+.+   |+.++|++|++.|++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~---------~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~   71 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS---------AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD   71 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------GGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccc---------cccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence            6999999999999997    667777788887731         012689999999999999   999999999999877


Q ss_pred             CCcC----------CccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300           74 PSSY----------INKAYQTPLSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        74 ~~~~----------~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      +...          .|..|.||||+|+..|+.+++++|+++|++
T Consensus        72 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  115 (256)
T 2etb_A           72 SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD  115 (256)
T ss_dssp             TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6422          246799999999999999999999999887

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=6.7e-33  Score=265.05  Aligned_cols=220  Identities=19%  Similarity=0.228  Sum_probs=173.9

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHc----CCCCCc---CCccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCcccC
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEK----DSAPSS---YINKAYQTPLSIAIDV---RLNDIACFIIDKSSESLNAT  112 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~----g~~~~~---~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~  112 (534)
                      ..|..|.||||.|++.|+.++|+.|++.    ++++..   ..+..|.||||+|+..   |+.+++++|++++++...  
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~--   85 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS--   85 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC--
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc--
Confidence            4789999999999999999999998874    444432   3578999999999987   999999999999875200  


Q ss_pred             CCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcc
Q 039300          113 RLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYK  192 (534)
Q Consensus       113 ~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  192 (534)
                                                   ++.++.      ......|..|.||||+|+..|+.+++++|++.|+++. .
T Consensus        86 -----------------------------~~~~i~------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~  129 (273)
T 2pnn_A           86 -----------------------------LKQFVN------ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-A  129 (273)
T ss_dssp             -----------------------------HHHHHT------CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             -----------------------------hhHHhh------cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-c
Confidence                                         111111      1123456789999999999999999999999999876 4


Q ss_pred             cCC--------------CCCcHHHHHHHcCcHHHHHHHHH---hCCCccccccCCCCcHHHHHHhcCC---------HHH
Q 039300          193 RDC--------------NGATPLHLAAENGELKVLKLLIN---KYPDAIEIRDNSDRSILHVAAKHGN---------WNI  246 (534)
Q Consensus       193 ~~~--------------~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~  246 (534)
                      .+.              .|.||||+|+..|+.+++++|++   .+.+ ++.+|..|+||||+|+..|+         .++
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~  208 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSM  208 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence            454              79999999999999999999999   7888 89999999999999999998         799


Q ss_pred             HHHHHhCCccccccc-------ccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCCh
Q 039300          247 VSFILKSPEMENLIN-------LIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTT  306 (534)
Q Consensus       247 ~~~Ll~~~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~  306 (534)
                      +++|++.|++   +|       .+|..|+||||+|+..|+.+++++|++++..|+.....  .+.+|
T Consensus       209 v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~--~~~~~  270 (273)
T 2pnn_A          209 YNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHA--AAHHH  270 (273)
T ss_dssp             HHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhh--hhhhc
Confidence            9999999876   54       58999999999999999999999999984337777666  55544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.1e-31  Score=254.12  Aligned_cols=200  Identities=21%  Similarity=0.250  Sum_probs=176.9

Q ss_pred             CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc----ccCCCCcHHHHHHhC---CCHHHHHHHHhhchh
Q 039300          116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR----LDWHQRNPLHYAAAS---GNVQMVQRLLEASKQ  188 (534)
Q Consensus       116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~----~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~  188 (534)
                      .|+||||.|+..|+.+.         ++.+++.+.+.+.+++.    .|..|+||||+|+..   |+.+++++|++.|++
T Consensus         1 ~G~t~L~~A~~~g~~~~---------v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~   71 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEE---------LTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD   71 (256)
T ss_dssp             CCHHHHHHHHHHTCGGG---------GTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHH---------HHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence            47899999999999998         55556655444567777    899999999999999   999999999999987


Q ss_pred             hhcc----------cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-------------CCcHHHHHHhcCCHH
Q 039300          189 LAYK----------RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHGNWN  245 (534)
Q Consensus       189 ~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~  245 (534)
                      ....          .|..|.||||+|+..|+.+++++|++++++ ++..|..             |+||||+|+..|+.+
T Consensus        72 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~  150 (256)
T 2etb_A           72 SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD  150 (256)
T ss_dssp             TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHH
T ss_pred             ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            6422          246799999999999999999999999998 7888876             999999999999999


Q ss_pred             HHHHHHh---CCcccccccccCCCCCcHHHHHHh--cCChh-------HHHHhhhCcccch-------hhccccCCCCCh
Q 039300          246 IVSFILK---SPEMENLINLIDRNGNTSLHLAAM--GLHSD-------VVFTLSRHKSVNI-------RAKNRSARNNTT  306 (534)
Q Consensus       246 ~~~~Ll~---~~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~-------~~~n~~~~g~t~  306 (534)
                      ++++|++   .|++   +|.+|.+|+||||+|+.  .++.+       ++++|+++ |+++       +.+|.  .|.||
T Consensus       151 ~v~~Ll~~~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~--~g~tp  224 (256)
T 2etb_A          151 VVTYLLENPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNH--QGLTP  224 (256)
T ss_dssp             HHHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCT--TSCCH
T ss_pred             HHHHHHhccccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCC--CCCCH
Confidence            9999999   7776   99999999999999999  78888       99999998 7999       89999  99999


Q ss_pred             HHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          307 LEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       307 l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      |++|..       ....+++++|+++|+...+
T Consensus       225 L~~A~~-------~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          225 LKLAAK-------EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             HHHHHH-------TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------hCCHHHHHHHHhCCCCCCC
Confidence            999998       5578899999999987644

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.1e-30  Score=229.50  Aligned_cols=155  Identities=31%  Similarity=0.466  Sum_probs=97.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCc
Q 039300            5 PLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQT   84 (534)
Q Consensus         5 ~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~t   84 (534)
                      +|+.||+.|+.++|+.|+++|+++|.             +|.+|.||||+|+..++.+++++|+++|+++. ..|.+|.|
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~-------------~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~T   72 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNA-------------SDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRT   72 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC-------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC-------------cCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCC
Confidence            57777777777777777777776663             66777777777777777777777777776664 55667777


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCC
Q 039300           85 PLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR  164 (534)
Q Consensus        85 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~  164 (534)
                      |||+|+..|+.+++++|+++|++                                                ++.+|.+|+
T Consensus        73 pLh~A~~~g~~~~v~~Ll~~gad------------------------------------------------vn~~d~~G~  104 (169)
T 4gpm_A           73 PLHHAAENGHKEVVKLLISKGAD------------------------------------------------VNAKDSDGR  104 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC------------------------------------------------TTCCCTTSC
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCC------------------------------------------------CCCCCCCCC
Confidence            77777777777777777766654                                                223344455


Q ss_pred             cHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 039300          165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD  222 (534)
Q Consensus       165 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  222 (534)
                      ||||+|+..|+.+++++|++.|+++. .+|..|.||||+|++.|+.+++++|+++|++
T Consensus       105 TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          105 TPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            55555555555555555555555543 4455555555555555555555555555554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.2e-31  Score=254.30  Aligned_cols=204  Identities=17%  Similarity=0.241  Sum_probs=172.4

Q ss_pred             CCCCCcHhHHHHHhCcHHHHHHHH----HcCCCCCcC---CccCCCcHHHHHH---HcCcHHHHHHHHhcCCCCcccCCC
Q 039300           45 DIEGNTPLHNVVTKKHKRVIRILV----EKDSAPSSY---INKAYQTPLSIAI---DVRLNDIACFIIDKSSESLNATRL  114 (534)
Q Consensus        45 d~~g~TpLh~A~~~g~~e~v~~Ll----~~g~~~~~~---~~~~g~tpL~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~  114 (534)
                      |..|.||||.|++.|+.+.++.|+    +.|+++...   .+..|.||||+|+   ..|+.+++++|++.+++...    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~----   77 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN----   77 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC----
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc----
Confidence            467899999999999999655544    488877532   2367999999999   67999999999998875210    


Q ss_pred             CCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccC
Q 039300          115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRD  194 (534)
Q Consensus       115 ~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  194 (534)
                                                 ...++.      ...+..|..|+||||+|+..|+.+++++|++.|+++. ..+
T Consensus        78 ---------------------------~~~~~~------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~  123 (260)
T 3jxi_A           78 ---------------------------MREFIN------SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQA  123 (260)
T ss_dssp             ---------------------------HHHHHT------CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             ---------------------------hHhhhc------ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccc
Confidence                                       111111      3355667789999999999999999999999999876 455


Q ss_pred             --------------CCCCcHHHHHHHcCcHHHHHHHHH---hCCCccccccCCCCcHHHHHHhcCC---------HHHHH
Q 039300          195 --------------CNGATPLHLAAENGELKVLKLLIN---KYPDAIEIRDNSDRSILHVAAKHGN---------WNIVS  248 (534)
Q Consensus       195 --------------~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~~~  248 (534)
                                    ..|.||||+|+..|+.+++++|++   .+.+ ++.+|..|+||||+|+..++         .++++
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~  202 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD  202 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence                          579999999999999999999999   7888 89999999999999999887         79999


Q ss_pred             HHHhCCcccccc-------cccCCCCCcHHHHHHhcCChhHHHHhhhCc
Q 039300          249 FILKSPEMENLI-------NLIDRNGNTSLHLAAMGLHSDVVFTLSRHK  290 (534)
Q Consensus       249 ~Ll~~~~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  290 (534)
                      +|++.|++   +       +.+|..|+||||+|+..|+.+++++|++++
T Consensus       203 ~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          203 LLLIKCAK---LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             HHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCcc---cccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            99999876   5       789999999999999999999999999984

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.9e-30  Score=226.85  Aligned_cols=136  Identities=35%  Similarity=0.502  Sum_probs=118.6

Q ss_pred             hhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcH
Q 039300          155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI  234 (534)
Q Consensus       155 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  234 (534)
                      ++|.+|..|+||||+|+..++.++++.|++.|+++. .+|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||
T Consensus        29 dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~Tp  106 (169)
T 4gpm_A           29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTP  106 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCH
Confidence            356677789999999999999999999999999865 6788999999999999999999999999998 89999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhh
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA  296 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  296 (534)
                      ||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|+..|+.+++++|+++ |++++.
T Consensus       107 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GA~ie~  164 (169)
T 4gpm_A          107 LHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-GGWLEH  164 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCC
Confidence            9999999999999999999887   899999999999999999999999999998 777764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.6e-30  Score=248.59  Aligned_cols=198  Identities=20%  Similarity=0.226  Sum_probs=173.3

Q ss_pred             CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhh----cccCCCCcHHHHHHhC---CCHHHHHHHHhhchh
Q 039300          116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLIN----RLDWHQRNPLHYAAAS---GNVQMVQRLLEASKQ  188 (534)
Q Consensus       116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~  188 (534)
                      .|.||||.|+..|+.++         ++.+++...+.+..++    ..|..|+||||+|+..   |+.+++++|++.|++
T Consensus        12 ~g~t~L~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQE---------LESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             CCHHHHHHHHHTTCSST---------TTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHH---------HHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            89999999999999999         7777776544444444    4588999999999987   999999999999986


Q ss_pred             hhc------c----cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC--------------CCCcHHHHHHhcCCH
Q 039300          189 LAY------K----RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN--------------SDRSILHVAAKHGNW  244 (534)
Q Consensus       189 ~~~------~----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~  244 (534)
                      ...      .    .|..|.||||+|+..|+.+++++|++++++ ++.++.              .|+||||+|+..|+.
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL  161 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence            321      1    466899999999999999999999999998 788886              799999999999999


Q ss_pred             HHHHHHHh---CCcccccccccCCCCCcHHHHHHhcCC---------hhHHHHhhhCcccchh-------hccccCCCCC
Q 039300          245 NIVSFILK---SPEMENLINLIDRNGNTSLHLAAMGLH---------SDVVFTLSRHKSVNIR-------AKNRSARNNT  305 (534)
Q Consensus       245 ~~~~~Ll~---~~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~~-------~~n~~~~g~t  305 (534)
                      +++++|++   .|++   ++.+|.+|+||||+|+..++         .+++++|+++ |++++       .+|.  .|.|
T Consensus       162 ~~v~~Ll~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~--~g~T  235 (273)
T 2pnn_A          162 AIVKFLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNR--KGLT  235 (273)
T ss_dssp             HHHHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCT--TSCC
T ss_pred             HHHHHHHhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCC--CCCC
Confidence            99999999   7776   99999999999999999998         7899999998 78986       4888  9999


Q ss_pred             hHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300          306 TLEIDEMTRADVTEVQKHLTLKALKTAYAKR  336 (534)
Q Consensus       306 ~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~  336 (534)
                      ||++|..       ..+.+++++|+++|++.
T Consensus       236 pL~~A~~-------~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          236 PLALAAS-------SGKIGVLAYILQREIHE  259 (273)
T ss_dssp             HHHHHHH-------TTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHH-------hChHHHHHHHHHCCCCC
Confidence            9999998       55788999999999953

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.6e-30  Score=243.43  Aligned_cols=202  Identities=19%  Similarity=0.157  Sum_probs=173.5

Q ss_pred             CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc----CCCCcHHHHHH---hCCCHHHHHHHHhhchh
Q 039300          116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD----WHQRNPLHYAA---ASGNVQMVQRLLEASKQ  188 (534)
Q Consensus       116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d----~~g~tpL~~A~---~~g~~~~v~~Ll~~~~~  188 (534)
                      .++++||.|+..|+.+.         ++.+++.+.+.+..++..+    ..|.||||+|+   ..|+.+++++|++.|++
T Consensus         4 ~~~~~L~~A~~~g~~~~---------v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~   74 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDG---------LEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK   74 (260)
T ss_dssp             CCHHHHHHHHHHTCGGG---------GTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhCCHHH---------HHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence            78899999999999998         6666664443345555444    77999999999   77999999999999875


Q ss_pred             hh----------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc--------------CCCCcHHHHHHhcCCH
Q 039300          189 LA----------YKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD--------------NSDRSILHVAAKHGNW  244 (534)
Q Consensus       189 ~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~  244 (534)
                      ..          ...|..|.||||+|+..|+.+++++|++++++ ++..|              ..|+||||+|+..|+.
T Consensus        75 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  153 (260)
T 3jxi_A           75 TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP  153 (260)
T ss_dssp             TTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred             ccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence            32          12345899999999999999999999999998 78888              6899999999999999


Q ss_pred             HHHHHHHh---CCcccccccccCCCCCcHHHHHHhcCC---------hhHHHHhhhCcccch-------hhccccCCCCC
Q 039300          245 NIVSFILK---SPEMENLINLIDRNGNTSLHLAAMGLH---------SDVVFTLSRHKSVNI-------RAKNRSARNNT  305 (534)
Q Consensus       245 ~~~~~Ll~---~~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~n~~~~g~t  305 (534)
                      +++++|++   .+++   ++.+|..|+||||+|+..++         .+++++|+++ |+++       +.+|.  .|.|
T Consensus       154 ~~v~~Ll~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~--~g~t  227 (260)
T 3jxi_A          154 HIVHYLTENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNN--DGLS  227 (260)
T ss_dssp             HHHHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCT--TSCC
T ss_pred             HHHHHHHhccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccC--CCCC
Confidence            99999999   7766   99999999999999999888         6899999998 7898       77999  9999


Q ss_pred             hHHHhHhhhhchHHHHHHhHHHHHHHHhhhccCCH
Q 039300          306 TLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSA  340 (534)
Q Consensus       306 ~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~~~  340 (534)
                      ||++|..       ..+.+++++|+++|+...++.
T Consensus       228 pL~~A~~-------~g~~~~v~~Ll~~g~~~~~~~  255 (260)
T 3jxi_A          228 PLMMAAK-------TGKIGIFQHIIRREIADAAAH  255 (260)
T ss_dssp             HHHHHHH-------TTCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHH-------cCCHHHHHHHHHhCCCccccc
Confidence            9999998       557889999999999876643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=243.07  Aligned_cols=196  Identities=19%  Similarity=0.261  Sum_probs=115.5

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCC-CCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSA-PSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR  127 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~  127 (534)
                      .+++|.|+..|+.+.++.+++.+.+ ..+..|..|.||||+|+..|+.+++++|++.++..++..+. .|.||||.|+..
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR-AGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC-CCCCHHHHHHHH
Confidence            4566666666666666666655433 12344566666666666666666666666666532333222 333333333211


Q ss_pred             cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc
Q 039300          128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN  207 (534)
Q Consensus       128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  207 (534)
                      ...                                         ..++.++++.|++.|.... ..+..|.||||+|+..
T Consensus       156 ~~~-----------------------------------------~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~  193 (276)
T 4hbd_A          156 TLK-----------------------------------------TQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSH  193 (276)
T ss_dssp             CCC-----------------------------------------SHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHT
T ss_pred             Hhh-----------------------------------------hhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHc
Confidence            000                                         2244555666666664432 4555666666666666


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHh-CCcccccccccCCCCCcHHHHHHhcCChhHHHHh
Q 039300          208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL  286 (534)
Q Consensus       208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~-~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  286 (534)
                      |+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++   ++.+|.+|+||||+|+..|+.+++++|
T Consensus       194 g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~TpL~~A~~~g~~~iv~~L  269 (276)
T 4hbd_A          194 GRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD---ISLTDRDGSTALMVALDAGQSEIASML  269 (276)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC---CcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            666666666666666 66666677777777777777777777776 5554   666677777777777777777777777


Q ss_pred             hhCcc
Q 039300          287 SRHKS  291 (534)
Q Consensus       287 l~~~~  291 (534)
                      +++.+
T Consensus       270 l~~~~  274 (276)
T 4hbd_A          270 YSRMN  274 (276)
T ss_dssp             HHHCC
T ss_pred             HhccC
Confidence            66544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=241.47  Aligned_cols=180  Identities=20%  Similarity=0.230  Sum_probs=160.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCC
Q 039300           83 QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWH  162 (534)
Q Consensus        83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~  162 (534)
                      .+++|.|+..|+.+.++.+++.+.+                                              ..+|..|.+
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~----------------------------------------------~~~n~~d~~  110 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLD----------------------------------------------YVVNIADSN  110 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHH----------------------------------------------HHHTCCCTT
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHh----------------------------------------------hcCcCCCCC
Confidence            4678899999999999999986543                                              346778889


Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHH-----HcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA-----ENGELKVLKLLINKYPDAIEIRDNSDRSILHV  237 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  237 (534)
                      |+||||+|+..|+.+++++|++.|+...+..|..|.||||+|+     ..++.++++.|++.+.+ .+..|..|+||||+
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~  189 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALML  189 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence            9999999999999999999999998455578999999999999     67899999999999977 77888899999999


Q ss_pred             HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhh
Q 039300          238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTR  314 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~  314 (534)
                      |+.+|+.+++++|++.|++   +|.+|.+|+||||+|+..|+.+++++|++..|+|++.+|.  .|.|||++|....
T Consensus       190 A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~--~g~TpL~~A~~~g  261 (276)
T 4hbd_A          190 AVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR--DGSTALMVALDAG  261 (276)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCT--TSCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCC--CCCCHHHHHHHcC
Confidence            9999999999999999887   8999999999999999999999999999966899999999  9999999998743

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.1e-31  Score=247.09  Aligned_cols=206  Identities=17%  Similarity=0.123  Sum_probs=166.6

Q ss_pred             HHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHH
Q 039300           18 VSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDI   97 (534)
Q Consensus        18 v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~i   97 (534)
                      ++.|+++|++++..          +..+..|.||||.|+..|+.++|++|++.|++++ ..|..|.||||+|+..|+.++
T Consensus         1 v~~ll~~~~~~~~~----------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~   69 (229)
T 2vge_A            1 MRSVLRKAGSPRKA----------RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSI   69 (229)
T ss_dssp             ---------CCCCC----------CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHH
T ss_pred             CeehhccCCCCccc----------cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHH
Confidence            46788888887642          2356778899999999999999999999998875 678999999999999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHH
Q 039300           98 ACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ  177 (534)
Q Consensus        98 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  177 (534)
                      +++|++.|++                                                ++..|..|+||||+|+..|+.+
T Consensus        70 v~~Ll~~ga~------------------------------------------------~n~~d~~g~tpLh~A~~~g~~~  101 (229)
T 2vge_A           70 VDFLITAGAN------------------------------------------------VNSPDSHGWTPLHCAASCNDTV  101 (229)
T ss_dssp             HHHHHHTTCC------------------------------------------------TTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHCCCC------------------------------------------------CCCCCCCCCCHHHHHHHcCCHH
Confidence            9999988765                                                3445667899999999999999


Q ss_pred             HHHHHHhhchhhhcccCCCCCcHHHHH--HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCc
Q 039300          178 MVQRLLEASKQLAYKRDCNGATPLHLA--AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE  255 (534)
Q Consensus       178 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  255 (534)
                      ++++|++.|+++....+..|.||||+|  +..|+.+++++|++.+++ ++..|..|.|+++.++..+..   ++|++.|+
T Consensus       102 ~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga  177 (229)
T 2vge_A          102 ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFREGE  177 (229)
T ss_dssp             HHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCTTC
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---ccCccccc
Confidence            999999999987754457999999999  999999999999999998 888999999999966555433   56777765


Q ss_pred             ccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          256 MENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       256 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      + ..++.+|.+|+||||+|+..|+.++++.++
T Consensus       178 ~-~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          178 S-VTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             E-EEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             c-ccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            3 347889999999999999999999987644

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.2e-28  Score=213.12  Aligned_cols=156  Identities=21%  Similarity=0.245  Sum_probs=92.5

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCC
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY   82 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g   82 (534)
                      .||||.|++.|+.+++++|+++|++++             .+|..|.||||+|+. |+.+++++|+++|+++. ..+..|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~-------------~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g   70 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVN-------------AQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTG   70 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTT-------------CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCcc-------------ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCC
Confidence            466666666666666666666666555             256666666666666 66666666666666553 456666


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCC
Q 039300           83 QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWH  162 (534)
Q Consensus        83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~  162 (534)
                      .||||+|+..|+.+++++|++++++                                                ++..|..
T Consensus        71 ~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~~~  102 (162)
T 1ihb_A           71 FAVIHDAARAGFLDTLQTLLEFQAD------------------------------------------------VNIEDNE  102 (162)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC------------------------------------------------CCCcCCC
Confidence            6666666666666666666665543                                                2223334


Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCC
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP  221 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  221 (534)
                      |.||||+|+..|+.+++++|++.|++..+..|..|.||||+|+..|+.+++++|+++|+
T Consensus       103 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            55555555555555555555555554333455555555555555555555555555554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=3.5e-28  Score=215.17  Aligned_cols=138  Identities=22%  Similarity=0.201  Sum_probs=68.6

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  111 (172)
T 3v30_A           34 ERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVR  111 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            344444444444444444444444444432 3344455555555555555555555555554 45555555555555555


Q ss_pred             cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCCh
Q 039300          241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTT  306 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~  306 (534)
                      .|+.+++++|++.|++   ++.+|..|+||||+|+..++.+++++|+++ ++++..+|.  .|.||
T Consensus       112 ~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~~~~~~~~--~~~~p  171 (172)
T 3v30_A          112 GNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNL--VPADP  171 (172)
T ss_dssp             TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHHHSCC---------
T ss_pred             cCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHHH-HHHHhcccC--CCCCC
Confidence            5555555555555544   555555555555555555555555555555 455555555  55544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=5.9e-28  Score=212.61  Aligned_cols=159  Identities=23%  Similarity=0.366  Sum_probs=112.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|.||||.||..|+.+++++|++.|++++             .+|..|.||||+|+..|+.+++++|+++|+++. ..+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~   67 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-------------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGK   67 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcC-------------CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCC
Confidence            37888888888888888888888877666             377888888888888888888888888887774 5677


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.||||+|+..|+.+++++|++++++                                                ++..|
T Consensus        68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~   99 (167)
T 3v31_A           68 GRESALSLACSKGYTDIVKMLLDCGVD------------------------------------------------VNEYD   99 (167)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCC------------------------------------------------TTCCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCC------------------------------------------------CCcCC
Confidence            888888888888888888888877654                                                22334


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD  222 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  222 (534)
                      ..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..|+.+++++|++++.+
T Consensus       100 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          100 WNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            445566666666666666666666665543 4455566666666666666666666555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=4e-28  Score=218.94  Aligned_cols=164  Identities=25%  Similarity=0.275  Sum_probs=98.8

Q ss_pred             hhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCc
Q 039300           39 TLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL  118 (534)
Q Consensus        39 ~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~  118 (534)
                      .+++.+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++++++           
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------   93 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-----------   93 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----------
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCC-----------
Confidence            3455677777777777777777777777777776654 4566677777777777777777777766543           


Q ss_pred             hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300          119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGA  198 (534)
Q Consensus       119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  198 (534)
                                                           ++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.
T Consensus        94 -------------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~  135 (192)
T 2rfm_A           94 -------------------------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGE  135 (192)
T ss_dssp             -------------------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCC
T ss_pred             -------------------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCC
Confidence                                                 12233345555555555555555555555555433 4455555


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  253 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  253 (534)
                      ||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus       136 t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          136 TPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            555555555555555555555555 455555555555555555555555555543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=3.4e-30  Score=255.22  Aligned_cols=233  Identities=12%  Similarity=0.099  Sum_probs=165.9

Q ss_pred             CCCCcHhHHHHHhCcHHHHHHHHHcCCCCC--cCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCC--cccCCCCCCchHH
Q 039300           46 IEGNTPLHNVVTKKHKRVIRILVEKDSAPS--SYINKAYQTPLSIAIDVRLNDIACFIIDKSSES--LNATRLPDELTLL  121 (534)
Q Consensus        46 ~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~t~L  121 (534)
                      .+++||||+|++.|+.++|++|+++|+...  ...+..|.||||+|+..|+.+++++|+++|++.  .+.... + .|||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpL  167 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAF  167 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHH
Confidence            345699999999999999999999987321  123556789999999999999999999999741  112221 2 8999


Q ss_pred             HHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc--ccCCCCcHHHHHH-hCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300          122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR--LDWHQRNPLHYAA-ASGNVQMVQRLLEASKQLAYKRDCNGA  198 (534)
Q Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~--~d~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~  198 (534)
                      |.|+.+|+.++         ++.|++..    .+++.  .|..|.||||+|+ ..|+.+++++|++.|+.        |.
T Consensus       168 h~Aa~~G~~ei---------v~~Ll~~g----a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~  226 (376)
T 2aja_A          168 RLAAENGHLHV---------LNRLCELA----PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LA  226 (376)
T ss_dssp             HHHHHTTCHHH---------HHHHHHSC----GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HH
T ss_pred             HHHHHCCCHHH---------HHHHHHcC----CccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cc
Confidence            99999999998         88888763    45555  7778899999999 99999999999997752        77


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH---------------------------HHHHHHH
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW---------------------------NIVSFIL  251 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~---------------------------~~~~~Ll  251 (534)
                      ||||.|+.+|+.+++++|++++++ ++..|    ++++.|+.+|+.                           +.+++|+
T Consensus       227 taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll  301 (376)
T 2aja_A          227 YAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL  301 (376)
T ss_dssp             HHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHH
Confidence            999999999999999999998876 44333    234444444433                           4455555


Q ss_pred             hCCcccccc--cccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          252 KSPEMENLI--NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       252 ~~~~~~~~~--~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      +.+....+.  ...++.++||||+|+..|+.+++++|++.+    ..++.  .++|+++++..
T Consensus       302 ~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~--~~~~~~~~~~~  358 (376)
T 2aja_A          302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLAL--TKANNYYINET  358 (376)
T ss_dssp             TSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHS--CC---------
T ss_pred             hChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHH--HHHhccccccc
Confidence            543322111  233467889999999999999999999874    45666  89999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=4.1e-28  Score=214.76  Aligned_cols=145  Identities=26%  Similarity=0.350  Sum_probs=136.8

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG  242 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  242 (534)
                      +.||||.|+..|+.++++.|++.+....+..|..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence            468999999999999999999999986778899999999999999999999999999998 8999999999999999999


Q ss_pred             CHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhh
Q 039300          243 NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTR  314 (534)
Q Consensus       243 ~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~  314 (534)
                      +.+++++|++.+.+   ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.  .|.||+++|....
T Consensus        81 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~~~  146 (172)
T 3v30_A           81 YTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEAD--SGYTPMDLAVALG  146 (172)
T ss_dssp             CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCC--CCCCHHHHHHHhC
Confidence            99999999999877   899999999999999999999999999998 799999999  9999999998753

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=6.1e-28  Score=217.74  Aligned_cols=166  Identities=23%  Similarity=0.263  Sum_probs=154.9

Q ss_pred             hhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCc
Q 039300          154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS  233 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  233 (534)
                      ..++.+|..|+||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++ ++..|..|+|
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  103 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKT  103 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCC
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence            4578899999999999999999999999999998765 6788999999999999999999999999998 8999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300          234 ILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT  313 (534)
Q Consensus       234 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~  313 (534)
                      |||+|+..|+.+++++|++.+++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.  .|.||+++|.. 
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~-  176 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDL--TGLTAEASARI-  176 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCT--TSCBHHHHHHH-
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHHHH-
Confidence            99999999999999999999887   899999999999999999999999999998 899999999  99999999998 


Q ss_pred             hhchHHHHHHhHHHHHHHHhh
Q 039300          314 RADVTEVQKHLTLKALKTAYA  334 (534)
Q Consensus       314 ~~~~~~~~~~~~~~~L~~~ga  334 (534)
                            ....+++++|++.|.
T Consensus       177 ------~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          177 ------FGRQEVIKIFTEVRR  191 (192)
T ss_dssp             ------TTCHHHHHHHHHHHH
T ss_pred             ------hCcHHHHHHHHhccC
Confidence                  456788888888763

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.8e-27  Score=209.95  Aligned_cols=158  Identities=23%  Similarity=0.369  Sum_probs=96.6

Q ss_pred             CCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHH
Q 039300           45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF  124 (534)
Q Consensus        45 d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A  124 (534)
                      ...+.||||.|++.|+.++|++|+++|++++ ..|..|.||||+|+..|+.+++++|++++++                 
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------   72 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-----------------   72 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------
Confidence            3445566666666666666666666666553 4566666666666666666666666665543                 


Q ss_pred             HHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHH
Q 039300          125 VMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA  204 (534)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  204 (534)
                                                     ++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|
T Consensus        73 -------------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A  120 (169)
T 2y1l_E           73 -------------------------------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLA  120 (169)
T ss_dssp             -------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             -------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence                                           12223345566666666666666666666665543 4555666666666


Q ss_pred             HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300          205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  253 (534)
Q Consensus       205 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  253 (534)
                      +..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++.
T Consensus       121 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          121 AMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            666666666666666665 566666666666666666666666666654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.8e-27  Score=208.28  Aligned_cols=158  Identities=21%  Similarity=0.260  Sum_probs=120.6

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM  126 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~  126 (534)
                      ...||||.|+..|+.+++++|+++|+++. ..|..|.||||+|+. |+.+++++|++++++                   
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-------------------   62 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGAN-------------------   62 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-------------------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCC-------------------
Confidence            34578888888888888888888887764 567778888888877 888888888876654                   


Q ss_pred             hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300          127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE  206 (534)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  206 (534)
                                                   ++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+.
T Consensus        63 -----------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~  112 (162)
T 1ihb_A           63 -----------------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAK  112 (162)
T ss_dssp             -----------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             -----------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence                                         23345567788888888888888888888887654 567788888888888


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCc
Q 039300          207 NGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE  255 (534)
Q Consensus       207 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~  255 (534)
                      .|+.+++++|++++++.++.+|..|+||||+|+.+|+.+++++|+++|+
T Consensus       113 ~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            8888888888888877667777888888888888888888888887765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=3.2e-30  Score=255.40  Aligned_cols=244  Identities=11%  Similarity=0.113  Sum_probs=165.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC--cCCc
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS--SYIN   79 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~--~~~~   79 (534)
                      ++||||+||+.|+.++|++|+++|+....          ....|..|.||||+|+.+|+.++|++|+++|++..  +..+
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~----------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~  161 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEI----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA  161 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSS----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHH----------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC
Confidence            46999999999999999999999873211          11245567899999999999999999999997631  1223


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc--CCCCCCchHHHHHH-HhcCcchhhhhhhHHHHHHHHHHhCCChhhh
Q 039300           80 KAYQTPLSIAIDVRLNDIACFIIDKSSESLNA--TRLPDELTLLHFFV-MRQNYDLSKSMQFLQFIDIMVKILGTNKDLI  156 (534)
Q Consensus        80 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~~g~t~L~~A~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  156 (534)
                      .+ .||||+|+..|+.+++++|+++|++. +.  .+. .|.||||.|+ .+|+.++         ++.|++.    +.  
T Consensus       162 ~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~-~g~TpL~~Aa~~~G~~ei---------v~~Ll~~----ga--  223 (376)
T 2aja_A          162 EN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQA-ENYYAFRWAAVGRGHHNV---------INFLLDC----PV--  223 (376)
T ss_dssp             HH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHH-HHHHHHHHHHSTTCCHHH---------HHHHTTS----HH--
T ss_pred             CC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCC-CCCCHHHHHHHHCCCHHH---------HHHHHhC----CC--
Confidence            33 89999999999999999999999873 32  444 7899999999 9999999         7666652    22  


Q ss_pred             hcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc---------------------------
Q 039300          157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE---------------------------  209 (534)
Q Consensus       157 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---------------------------  209 (534)
                           .|.||||+|+..|+.+++++|++.|++... .+    ++++.|+.+|+                           
T Consensus       224 -----~~~taL~~Aa~~g~~evv~lL~~~ga~~~~-~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~  293 (376)
T 2aja_A          224 -----MLAYAEIHEFEYGEKYVNPFIARHVNRLKE-MH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL  293 (376)
T ss_dssp             -----HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH-HH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGG
T ss_pred             -----ccchHHHHHHHCCCHHHHHHHHhcCccccc-cc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhH
Confidence                 278999999999999999999999987642 22    23344444433                           


Q ss_pred             HHHHHHHHHhCCCc----cccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHH
Q 039300          210 LKVLKLLINKYPDA----IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT  285 (534)
Q Consensus       210 ~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  285 (534)
                      .+.+++|++.....    ....+..+.||||+|+..|+.+++++|++.+      ..+|..|+|++.+|-..|+.++++.
T Consensus       294 ~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP------SVLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             HHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH------HHHHSCC------------------
T ss_pred             HHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh------HHHHHHHHhccccccccccccHHHH
Confidence            44455555432110    1122345678999999999999999999874      5567899999999999999988876


Q ss_pred             hhhC
Q 039300          286 LSRH  289 (534)
Q Consensus       286 Ll~~  289 (534)
                      -+.+
T Consensus       368 ~~~~  371 (376)
T 2aja_A          368 ALEH  371 (376)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            5543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=2.5e-27  Score=208.53  Aligned_cols=162  Identities=22%  Similarity=0.291  Sum_probs=151.2

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  241 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  241 (534)
                      .|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence            58899999999999999999999998754 7788999999999999999999999999988 889999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHH
Q 039300          242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQ  321 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~  321 (534)
                      |+.+++++|++.+.+   ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.  .|.||+++|..       ..
T Consensus        80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~--~g~t~l~~A~~-------~~  146 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETD--SGYNSMDLAVA-------LG  146 (167)
T ss_dssp             TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHH-------HT
T ss_pred             CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH-------cC
Confidence            999999999999877   899999999999999999999999999997 899999999  99999999998       55


Q ss_pred             HHhHHHHHHHHhhhccC
Q 039300          322 KHLTLKALKTAYAKRAL  338 (534)
Q Consensus       322 ~~~~~~~L~~~ga~~~~  338 (534)
                      ..+++++|.+++++...
T Consensus       147 ~~~~~~~L~~~~~~~~~  163 (167)
T 3v31_A          147 YRSVQQVIESHLLKLLQ  163 (167)
T ss_dssp             CHHHHHHHHHHHHHHCS
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            77889999999877544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=4.2e-27  Score=203.90  Aligned_cols=151  Identities=21%  Similarity=0.284  Sum_probs=94.4

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      +.||||.|++.|+.+++++|++.|++++              .|..|.||||+|+..|+.+++++|++.|+++. ..+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~   66 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKV   66 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCC
Confidence            3467777777777777777777766543              45667777777777777777777777776653 45666


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      |.||||+|+..|+.+++++|++++++                                                ++..|.
T Consensus        67 g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~~   98 (153)
T 1awc_B           67 DRTPLHMAASEGHANIVEVLLKHGAD------------------------------------------------VNAKDM   98 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCC------------------------------------------------TTCCCT
T ss_pred             CCCHHHHHHHcChHHHHHHHHHcCCC------------------------------------------------CCCCCC
Confidence            67777777777777777777665543                                                223334


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHH
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL  216 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  216 (534)
                      .|.||||+|+..|+.+++++|+++|+++. .+|..|.||||+|+..|+.+++++|
T Consensus        99 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           99 LKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            45566666666666666666666655543 4455555666666655555555544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=9.7e-27  Score=205.23  Aligned_cols=159  Identities=26%  Similarity=0.381  Sum_probs=144.9

Q ss_pred             CccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhh
Q 039300           78 INKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLIN  157 (534)
Q Consensus        78 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  157 (534)
                      ....+.+||+.|+..|+.+++++|++++++                                                ++
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~------------------------------------------------~~   41 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD------------------------------------------------VN   41 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TT
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC------------------------------------------------CC
Confidence            455678999999999999999999998765                                                23


Q ss_pred             cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300          158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV  237 (534)
Q Consensus       158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  237 (534)
                      ..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||.|+..|+.+++++|++++++ ++..|..|+||||+
T Consensus        42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~  119 (169)
T 2y1l_E           42 AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHL  119 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence            445678999999999999999999999999865 6788999999999999999999999999998 89999999999999


Q ss_pred             HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      |+..|+.+++++|++++++   ++.+|..|.||||+|+..++.+++++|++.
T Consensus       120 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          120 AAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            9999999999999999887   899999999999999999999999999986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=8e-27  Score=207.86  Aligned_cols=164  Identities=22%  Similarity=0.284  Sum_probs=151.2

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      .++.++||.|+..|+.++++.|++.+....+..|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            45789999999999999999999997666668899999999999999999999999999998 89999999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHH
Q 039300          241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEV  320 (534)
Q Consensus       241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~  320 (534)
                      .|+.+++++|++.+++   ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.  .|.||+++|..       .
T Consensus        82 ~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~-------~  148 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK--YGEMPVDKAKA-------P  148 (179)
T ss_dssp             TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCT--TSCCGGGGSCH-------H
T ss_pred             cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhcc--CCCCcHHHHHH-------H
Confidence            9999999999999887   899999999999999999999999999998 899999999  99999999987       6


Q ss_pred             HHHhHHHHHHHHhhhccC
Q 039300          321 QKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       321 ~~~~~~~~L~~~ga~~~~  338 (534)
                      .+..+.+.|++.|++...
T Consensus       149 ~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          149 LRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             HHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHHHHHHHhhcCccc
Confidence            678899999999998765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=5.4e-29  Score=232.87  Aligned_cols=209  Identities=16%  Similarity=0.136  Sum_probs=96.4

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM  126 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~  126 (534)
                      .|.||||.|++.++.++++.|+++|+++.  .+..|.||||.|+..|+.+++++|++.+++                   
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-------------------   62 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDD-------------------   62 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-------------------
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCC-------------------
Confidence            35555555555555555555555555543  134455555555555555555555554432                   


Q ss_pred             hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300          127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE  206 (534)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  206 (534)
                                                   ++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus        63 -----------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~  112 (239)
T 1ycs_B           63 -----------------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAAS  112 (239)
T ss_dssp             -----------------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHH
T ss_pred             -----------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence                                         12223344555555555555555555555555433 445555555555555


Q ss_pred             cCcHHHHHHHHHhCCCccccccCCCC-cHHHHH--HhcCCHHHHHHHHhCCccccc------ccccCCCCCcHHHHHHhc
Q 039300          207 NGELKVLKLLINKYPDAIEIRDNSDR-SILHVA--AKHGNWNIVSFILKSPEMENL------INLIDRNGNTSLHLAAMG  277 (534)
Q Consensus       207 ~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~------~~~~d~~g~t~Lh~A~~~  277 (534)
                      .|+.+++++|++++++ ++..|..|. ||||+|  +..|+.+++++|++.+++...      ....|..+.++++++...
T Consensus       113 ~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~  191 (239)
T 1ycs_B          113 CNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKE  191 (239)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCS
T ss_pred             cCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccC
Confidence            5555555555555555 445554444 666655  455556666666655443211      222367788888888877


Q ss_pred             CChhHHHHhhhCcccc------hhhccccCCCCChHHHhHh
Q 039300          278 LHSDVVFTLSRHKSVN------IRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       278 ~~~~~v~~Ll~~~~~~------~~~~n~~~~g~t~l~~a~~  312 (534)
                      |.  +++.|.+. +.+      ....+.  .|.+|..+...
T Consensus       192 G~--~i~vl~~~-~~~~~~Ww~~~~~~~--~G~~P~~yv~~  227 (239)
T 1ycs_B          192 GD--CMTIIHRE-DEDEIEWWWARLNDK--EGYVPRNLLGL  227 (239)
T ss_dssp             SC--EEEECCCC-TTSCSSEEEEEETTE--EEEEEGGGEEC
T ss_pred             CC--EEEEEEec-CCCCCCEEEEEECCc--EEEeehHHeeE
Confidence            75  34444433 222      234556  78889888765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.5e-26  Score=199.06  Aligned_cols=150  Identities=20%  Similarity=0.304  Sum_probs=99.9

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ  128 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~  128 (534)
                      .||||.|+..|+.+++++|++.|++..  .+..|.||||+|+..|+.+++++|++++++                     
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------   59 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---------------------   59 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------
Confidence            467777777777777777777776553  466677777777777777777777765543                     


Q ss_pred             CcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcC
Q 039300          129 NYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG  208 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  208 (534)
                                                 ++..|..|.||||+|+..|+.+++++|+++|+++. .+|..|.||||+|+..|
T Consensus        60 ---------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  111 (153)
T 1awc_B           60 ---------------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHN  111 (153)
T ss_dssp             ---------------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             ---------------------------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcC
Confidence                                       22334456677777777777777777777766644 45666666666666666


Q ss_pred             cHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 039300          209 ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI  250 (534)
Q Consensus       209 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~L  250 (534)
                      +.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|
T Consensus       112 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          112 HQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            66666666666666 566666666666666666666666654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=7e-27  Score=205.27  Aligned_cols=160  Identities=19%  Similarity=0.283  Sum_probs=91.9

Q ss_pred             cCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300           44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF  123 (534)
Q Consensus        44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~  123 (534)
                      .|.+|.||||.|++.|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++++++                
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------   67 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD----------------   67 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC----------------
Confidence            4556666777777777777777776654444344555566666666666666666666665543                


Q ss_pred             HHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHH
Q 039300          124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL  203 (534)
Q Consensus       124 A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  203 (534)
                                                      ++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+
T Consensus        68 --------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~  114 (165)
T 3twr_A           68 --------------------------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHE  114 (165)
T ss_dssp             --------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHH
T ss_pred             --------------------------------CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHH
Confidence                                            22233445566666666666666666666655543 445555556655


Q ss_pred             HHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300          204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP  254 (534)
Q Consensus       204 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  254 (534)
                      |+..|+.+++++|++++++ ++.+|..|+||||+|+. ++.+++++|++.|
T Consensus       115 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          115 AAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             HHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            5555555555555555555 55555555555555444 5555555555544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.9e-27  Score=206.87  Aligned_cols=161  Identities=24%  Similarity=0.292  Sum_probs=145.4

Q ss_pred             ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300          159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA  238 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  238 (534)
                      .|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence            3566889999999999999999999977655667788899999999999999999999999998 899999999999999


Q ss_pred             HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchH
Q 039300          239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVT  318 (534)
Q Consensus       239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~  318 (534)
                      +..|+.+++++|++.+++   ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.  .|.||+++|..      
T Consensus        83 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~a~~------  150 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNR--DGNTPLDLVKD------  150 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCTGGGSCT------
T ss_pred             HHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCC--CCCChhHhHhc------
Confidence            999999999999999887   899999999999999999999999999998 899999999  99999999876      


Q ss_pred             HHHHHhHHHHHHHHhh
Q 039300          319 EVQKHLTLKALKTAYA  334 (534)
Q Consensus       319 ~~~~~~~~~~L~~~ga  334 (534)
                        .+.+++++|++.|+
T Consensus       151 --~~~~i~~~L~~~gA  164 (165)
T 3twr_A          151 --GDTDIQDLLRGDAA  164 (165)
T ss_dssp             --TCHHHHHHHHTC--
T ss_pred             --CChHHHHHHhhccc
Confidence              23478888888775

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.3e-26  Score=206.45  Aligned_cols=167  Identities=19%  Similarity=0.248  Sum_probs=152.8

Q ss_pred             CCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccC
Q 039300          115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRD  194 (534)
Q Consensus       115 ~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  194 (534)
                      +++.++|+.|+..|+.++         ++.+++...   .+++..|..|.||||+|+..|+.+++++|++.|+++. ..|
T Consensus         3 ~~~~~~l~~A~~~g~~~~---------v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~   69 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVA---------VRLWLDNTE---NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMN   69 (179)
T ss_dssp             ----CCHHHHHHHTCHHH---------HHHHHHCTT---SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             HHHHHHHHHHHHcCCHHH---------HHHHHhcCc---ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcC
Confidence            377899999999999999         888888654   6788999999999999999999999999999999865 678


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300          195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                      ..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||||+|
T Consensus        70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A           70 RGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKA  145 (179)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHH
Confidence            8999999999999999999999999998 899999999999999999999999999999887   899999999999999


Q ss_pred             HhcCChhHHHHhhhCcccchhhccc
Q 039300          275 AMGLHSDVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       275 ~~~~~~~~v~~Ll~~~~~~~~~~n~  299 (534)
                      +..++.+++++|++. |++++..+.
T Consensus       146 ~~~~~~~~~~~L~~~-g~~~~~~~~  169 (179)
T 3f6q_A          146 KAPLRELLRERAEKM-GQNLNRIPY  169 (179)
T ss_dssp             CHHHHHHHHHHHHHT-TCCCSCBCC
T ss_pred             HHHHHHHHHHHHHHh-hcCcccCCc
Confidence            999999999999998 788887665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=4.8e-28  Score=226.39  Aligned_cols=179  Identities=16%  Similarity=0.137  Sum_probs=130.4

Q ss_pred             ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc
Q 039300           79 NKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR  158 (534)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~  158 (534)
                      +..|.||||.|+..++.++++.|+++|++. +                                                
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~------------------------------------------------   32 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-K------------------------------------------------   32 (239)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-c------------------------------------------------
Confidence            456899999999999999999999998761 1                                                


Q ss_pred             ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300          159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA  238 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  238 (534)
                      .+..|.||||.|+..|+.++++.|++.|++++ ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus        33 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A  110 (239)
T 1ycs_B           33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCA  110 (239)
T ss_dssp             ----CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHH
T ss_pred             cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence            01246799999999999999999999999755 7799999999999999999999999999999 899999999999999


Q ss_pred             HhcCCHHHHHHHHhCCcccccccccCCCCC-cHHHHH--HhcCChhHHHHhhhCcccchhhccc-------cCCCCChHH
Q 039300          239 AKHGNWNIVSFILKSPEMENLINLIDRNGN-TSLHLA--AMGLHSDVVFTLSRHKSVNIRAKNR-------SARNNTTLE  308 (534)
Q Consensus       239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v~~Ll~~~~~~~~~~n~-------~~~g~t~l~  308 (534)
                      +.+|+.+++++|+++|++   ++.+|..|. ||||+|  +..|+.+++++|+++ |++++..|.       +..+.++.+
T Consensus       111 ~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~e  186 (239)
T 1ycs_B          111 ASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDE  186 (239)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTB
T ss_pred             HHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHHHHHHHh-hhcccccccceEEEEeccCCCCCCc
Confidence            999999999999999887   889988777 999999  888999999999998 788777633       127899998


Q ss_pred             HhHh
Q 039300          309 IDEM  312 (534)
Q Consensus       309 ~a~~  312 (534)
                      ++..
T Consensus       187 La~~  190 (239)
T 1ycs_B          187 LPMK  190 (239)
T ss_dssp             CCBC
T ss_pred             cccc
Confidence            8765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=4.6e-26  Score=198.02  Aligned_cols=154  Identities=23%  Similarity=0.280  Sum_probs=142.2

Q ss_pred             CchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCC
Q 039300          117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN  196 (534)
Q Consensus       117 g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  196 (534)
                      +.|+||.|+..|+.+.         ++.+++...   ..++..|..|.||||+ +..|+.+++++|++.|+++. .+|..
T Consensus         2 ~~~~L~~A~~~g~~~~---------v~~ll~~~~---~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~   67 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQE---------VRRLLHREL---VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTS   67 (156)
T ss_dssp             HHHHHHHHHHHTCHHH---------HHHHHHTTC---CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             cchHHHHHHHhCCHHH---------HHHHHHhhC---cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCC
Confidence            4689999999999999         888888732   5688899999999999 99999999999999999865 67889


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300          197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM  276 (534)
Q Consensus       197 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~  276 (534)
                      |.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++. ++   ++.+|.+|+||||+|+.
T Consensus        68 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~  142 (156)
T 1bd8_A           68 GTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQ  142 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999988 899999999999999999999999999998 55   89999999999999999


Q ss_pred             cCChhHHHHhhhC
Q 039300          277 GLHSDVVFTLSRH  289 (534)
Q Consensus       277 ~~~~~~v~~Ll~~  289 (534)
                      .|+.+++++|+++
T Consensus       143 ~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          143 RGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTT
T ss_pred             cCcHHHHHHHHhh
Confidence            9999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=7.9e-26  Score=196.52  Aligned_cols=154  Identities=22%  Similarity=0.345  Sum_probs=129.9

Q ss_pred             CCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300           48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR  127 (534)
Q Consensus        48 g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~  127 (534)
                      |.||||.|+..|+.++++.|++.+....+..+..|.||||+ +..|+.+++++|+++|++                    
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~--------------------   60 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS--------------------   60 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC--------------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC--------------------
Confidence            46889999999999999999988333335678888899999 888889999888887665                    


Q ss_pred             cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc
Q 039300          128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN  207 (534)
Q Consensus       128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  207 (534)
                                                  ++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..
T Consensus        61 ----------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~  111 (156)
T 1bd8_A           61 ----------------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQE  111 (156)
T ss_dssp             ----------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHH
T ss_pred             ----------------------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHh
Confidence                                        33455678899999999999999999999998755 6788899999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300          208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  253 (534)
Q Consensus       208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  253 (534)
                      |+.+++++|++. ++ ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       112 ~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          112 GHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999988 66 888999999999999999999999999874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=8.9e-28  Score=222.60  Aligned_cols=190  Identities=14%  Similarity=0.137  Sum_probs=148.5

Q ss_pred             HHHHHcCCCCCc--CCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHH
Q 039300           65 RILVEKDSAPSS--YINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFI  142 (534)
Q Consensus        65 ~~Ll~~g~~~~~--~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~  142 (534)
                      +.|+++|+++..  ..+..+.||||.|+..|+.+++++|++.+++                                   
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----------------------------------   46 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-----------------------------------   46 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-----------------------------------
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-----------------------------------
Confidence            456666655432  2234455666666666666666666665543                                   


Q ss_pred             HHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 039300          143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD  222 (534)
Q Consensus       143 ~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  222 (534)
                                   ++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++
T Consensus        47 -------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~  112 (229)
T 2vge_A           47 -------------PSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAA  112 (229)
T ss_dssp             -------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             -------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                         45567789999999999999999999999999865 7788999999999999999999999999999


Q ss_pred             cccccc-CCCCcHHHHH--HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc--hhhc
Q 039300          223 AIEIRD-NSDRSILHVA--AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN--IRAK  297 (534)
Q Consensus       223 ~~~~~d-~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--~~~~  297 (534)
                       ++..+ ..|+||||+|  +..|+.+++++|++.|++   ++.+|..|.||+|.++.....   ++|++. |++  ++.+
T Consensus       113 -~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~  184 (229)
T 2vge_A          113 -IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFGD---ELSFRE-GESVTVLRR  184 (229)
T ss_dssp             -TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGGEEEESSCBCCSSTT---BCCBCT-TCEEEEEES
T ss_pred             -cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCCchHHHHHHhhcccc---ccCccc-ccccccccc
Confidence             77775 6999999999  999999999999999887   899999999999976555433   566666 677  6677


Q ss_pred             cccCCCCChHHHhHhh
Q 039300          298 NRSARNNTTLEIDEMT  313 (534)
Q Consensus       298 n~~~~g~t~l~~a~~~  313 (534)
                      |.  .|.|||++|+..
T Consensus       185 d~--~G~TpL~~A~~~  198 (229)
T 2vge_A          185 DG--PEETDWWWAALH  198 (229)
T ss_dssp             SC--TTCSSEEEEEET
T ss_pred             CC--CcccHHHHHHHc
Confidence            77  999999999873

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.4e-25  Score=192.51  Aligned_cols=147  Identities=22%  Similarity=0.216  Sum_probs=118.2

Q ss_pred             hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCc-H
Q 039300          156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS-I  234 (534)
Q Consensus       156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~  234 (534)
                      .+..+..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+ .|+.+++++|++++++ ++.+|..|+| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence            45567789999999999999999999999999865 67889999999985 9999999999999988 8999999999 9


Q ss_pred             HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhH
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDE  311 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~  311 (534)
                      ||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.  .|.||.+-+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~~~~~~  152 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNH--ARIDAAEGPS  152 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C--------------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCc--CcCcccccCC
Confidence            9999999999999999999887   899999999999999999999999999998 899999999  9999987544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=8.3e-25  Score=185.33  Aligned_cols=133  Identities=23%  Similarity=0.257  Sum_probs=125.1

Q ss_pred             hhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-CC
Q 039300          154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS-DR  232 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~  232 (534)
                      ..++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+. |+.+++++|++++++ ++.+|.. |+
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~   79 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLT   79 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            4678889999999999999999999999999998865 678999999999999 999999999999999 8999999 99


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc
Q 039300          233 SILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN  293 (534)
Q Consensus       233 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  293 (534)
                      ||||+|+..|+.+++++|++.+++   ++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad  136 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD  136 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence            999999999999999999999887   899999999999999999999999999987 553

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.4e-24  Score=193.93  Aligned_cols=161  Identities=14%  Similarity=0.082  Sum_probs=120.9

Q ss_pred             CchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc-CCCCcHHHHHHhCCCH----HHHHHHHhhchhhhc
Q 039300          117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD-WHQRNPLHYAAASGNV----QMVQRLLEASKQLAY  191 (534)
Q Consensus       117 g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d-~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~  191 (534)
                      +.++|+.|+..|+.+.         +..++...      ++..+ ..|+||||+|+..|+.    +++++|+++|++++ 
T Consensus         6 ~~~~l~~Aa~~g~~~~---------~~~l~~~~------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-   69 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYED---------FLELFEKG------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-   69 (186)
T ss_dssp             HCSSHHHHHHHSCHHH---------HHHHHHHS------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-
T ss_pred             cccHHHHHHHcCCHHH---------HHHHHhcC------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-
Confidence            3467888888888776         55555542      33334 5688888888888864    47888888888765 


Q ss_pred             ccCCCCCcHHHHHHHcCc------HHHHHHHHHhCCCccccccCCCC-cHHHHHHhcCC-----HHHHHHHHh-CCcccc
Q 039300          192 KRDCNGATPLHLAAENGE------LKVLKLLINKYPDAIEIRDNSDR-SILHVAAKHGN-----WNIVSFILK-SPEMEN  258 (534)
Q Consensus       192 ~~~~~g~tpL~~A~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~~~~~Ll~-~~~~~~  258 (534)
                      .+|..|.||||+|+..|+      .+++++|+++|++ ++.+|..|+ ||||+|+..+.     .+++++|++ .|++  
T Consensus        70 ~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad--  146 (186)
T 3t8k_A           70 SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ--  146 (186)
T ss_dssp             CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC--
T ss_pred             CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC--
Confidence            667888888888888776      5778888888888 788888888 88888888443     458888888 7776  


Q ss_pred             cccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcc
Q 039300          259 LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN  298 (534)
Q Consensus       259 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n  298 (534)
                       ++.+|..|.||||+|+..++.+++++|.+. ..+.+.++
T Consensus       147 -~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~-~~~~~~~~  184 (186)
T 3t8k_A          147 -LLIKDKWGLTALEFVKRCQKPIALKMMEDY-IKKYNLKE  184 (186)
T ss_dssp             -TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred             -CcccCCCCCCHHHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence             888888888888888888888888888776 33444443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.8e-24  Score=193.16  Aligned_cols=161  Identities=18%  Similarity=0.147  Sum_probs=139.1

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcH----HHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL----KVLKLLINKYPDAIEIRDNSDRSILHVA  238 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  238 (534)
                      ++++|+.|+..|+.+.++.+++.+.+.  ..+..|.||||+|+.+|+.    +++++|+++|++ ++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence            568999999999999999999887542  2236799999999999975    599999999999 899999999999999


Q ss_pred             HhcCC------HHHHHHHHhCCcccccccccCCCCC-cHHHHHHhcCC-----hhHHHHhhhCcccchhhccccCCCCCh
Q 039300          239 AKHGN------WNIVSFILKSPEMENLINLIDRNGN-TSLHLAAMGLH-----SDVVFTLSRHKSVNIRAKNRSARNNTT  306 (534)
Q Consensus       239 ~~~~~------~~~~~~Ll~~~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~~v~~Ll~~~~~~~~~~n~~~~g~t~  306 (534)
                      +..++      .+++++|+++|++   +|.+|..|+ ||||+|+..+.     .+++++|++..|+|++.+|.  .|+||
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~--~G~Tp  157 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--WGLTA  157 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT--TSCCH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC--CCCCH
Confidence            99987      5789999999988   999999999 99999999554     45899999945899999999  99999


Q ss_pred             HHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          307 LEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       307 l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      |++|..       .....++++|.+...+.+.
T Consensus       158 L~~A~~-------~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          158 LEFVKR-------CQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             HHHHHT-------TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHH-------cCCHHHHHHHHHHHHHHhc
Confidence            999998       4556777888877655443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.1e-22  Score=169.36  Aligned_cols=93  Identities=28%  Similarity=0.452  Sum_probs=80.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||.|++.|+.+++++|+++|++++.             +|..|.||||+|+..|+.+++++|++.|+++. ..|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~   66 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDK   66 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC-------------cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCC
Confidence            488999999999999999999999887763             78889999999999999999999999988874 6678


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      .|.||||+|+..|+.+++++|++++++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~   93 (126)
T 1n0r_A           67 NGRTPLHLAARNGHLEVVKLLLEAGAD   93 (126)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCC
Confidence            888999999999999999999887765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=1.3e-23  Score=177.92  Aligned_cols=130  Identities=16%  Similarity=0.145  Sum_probs=122.1

Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCC-CCc
Q 039300          191 YKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRN-GNT  269 (534)
Q Consensus       191 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~-g~t  269 (534)
                      +..|..|.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+. ++.+++++|++.+++   ++.+|.. |+|
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~g~t   80 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPATLTR   80 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTTTBC
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCCCCC
Confidence            46788999999999999999999999999988 89999999999999999 999999999999877   8999999 999


Q ss_pred             HHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhh
Q 039300          270 SLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAK  335 (534)
Q Consensus       270 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~  335 (534)
                      |||+|+..|+.+++++|+++ |++++.+|.  .|.|||++|..       ....+++++|+++|++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~--~g~tpl~~A~~-------~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRA-GARLDVCDA--WGRLPVDLAEE-------QGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-CCCCCCCSS--SSSCHHHHHHH-------HTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCccCC--CCCCHHHHHHH-------cCCHHHHHHHHHcCCC
Confidence            99999999999999999998 799999999  99999999998       5568899999999974

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=3.7e-23  Score=175.15  Aligned_cols=127  Identities=25%  Similarity=0.328  Sum_probs=117.8

Q ss_pred             cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300          158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV  237 (534)
Q Consensus       158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  237 (534)
                      .....+.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~   86 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHL   86 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHH
Confidence            344567899999999999999999999999865 6788999999999999999999999999998 89999999999999


Q ss_pred             HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      |+..|+.+++++|++++++   ++.+|.+|+||||+|+..++.+++++|++.
T Consensus        87 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999999999999877   899999999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=8.8e-23  Score=170.05  Aligned_cols=126  Identities=42%  Similarity=0.648  Sum_probs=118.6

Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  241 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  241 (534)
                      +|.||||.|+..|+.+++++|++.|.++. ..|..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence            48999999999999999999999998865 6788999999999999999999999999998 889999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc
Q 039300          242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN  293 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  293 (534)
                      ++.+++++|++.+.+   ++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus        79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred             ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            999999999999877   899999999999999999999999999987 553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=6.1e-23  Score=173.77  Aligned_cols=115  Identities=24%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |.||||+||+.|+.+++++|+++|++++             .+|..|.||||+|+.+|+.+++++|+++|++++ ..|..
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~   79 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVN-------------AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAI   79 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCC
Confidence            4678888888888888888888887766             367788888888888888888888888887764 56778


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL  132 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (534)
                      |.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++
T Consensus        80 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~tpl~~A~~~~~~~~  128 (136)
T 2jab_A           80 GFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDK-FGKTAFDISIGNGNEDL  128 (136)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC-CcCcCC-CCCCHHHHHHHCCCHHH
Confidence            88888888888888888888887765 233332 34444444444444333

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=3.3e-23  Score=179.90  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=86.7

Q ss_pred             hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCc-HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcH
Q 039300          156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGAT-PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI  234 (534)
Q Consensus       156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  234 (534)
                      ++..|..|+||||+|+ .|+.+++++|++.|+++. .+|..|.| |||+|+..|+.+++++|++++++ ++.+|..|+||
T Consensus        38 ~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tp  114 (156)
T 1bi7_B           38 PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLP  114 (156)
T ss_dssp             TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCH
T ss_pred             CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCH
Confidence            4555667899999985 899999999999998865 67888998 99999999999999999999998 89999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                      ||+|+..|+.+++++|+++|++   ++.+|..|.||.+-+
T Consensus       115 l~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          115 VDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             HHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence            9999999999999999999887   899999999997743

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=6.8e-23  Score=182.98  Aligned_cols=138  Identities=20%  Similarity=0.225  Sum_probs=122.3

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |+||||+||+.|+.++++.|++ |++++             .+|..|.||||+|+..|+.+++++|+++|++++...+..
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  109 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLE-DRDVD-------------AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG  109 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTT-TSCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh-cCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Confidence            6799999999999999999999 88777             488999999999999999999999999999987544488


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      |.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.+                              
T Consensus       110 g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~-~g~tpl~~A~~~~~~~------------------------------  157 (183)
T 3deo_A          110 GLTALHMAAGYVRPEVVEALVELGAD-IEVEDE-RGLTALELAREILKTT------------------------------  157 (183)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCT-TSCCHHHHHHHHHHTC------------------------------
T ss_pred             CCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCC-CCCCHHHHHHHhccCc------------------------------
Confidence            99999999999999999999999987 566776 9999999998765432                              


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhh
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEA  185 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~  185 (534)
                      .+.+||++|+..|..+++++|.++
T Consensus       158 ~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          158 PKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccHHHHHHHcCHHHHHHHHHHh
Confidence            357899999999999999998764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=7.6e-23  Score=191.50  Aligned_cols=140  Identities=19%  Similarity=0.203  Sum_probs=115.6

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |+||||+||+.|+.++|+.|++ |+++|             .+|..|.||||+|+.+|+.++|++|+++|++++...+..
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  110 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVD-------------AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG  110 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTT-------------CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCC-------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCC
Confidence            6789999999999999999999 87777             478889999999999999999999999998886544478


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      |.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.                              .
T Consensus       111 g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~-~g~t~l~~A~~~~~~------------------------------~  158 (244)
T 3ui2_A          111 GLTALHMAAGYVRPEVVEALVELGAD-IEVEDE-RGLTALELAREILKT------------------------------T  158 (244)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TCCCHHHHHHHHHTT------------------------------C
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC-CCCcHHHHHHHHHhc------------------------------c
Confidence            99999999999999999999999887 566666 888888888754321                              2


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhch
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASK  187 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~  187 (534)
                      .+.||||+|+..|+.+++++|++.+.
T Consensus       159 ~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          159 PKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            46788888888888888888887654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.1e-22  Score=172.51  Aligned_cols=114  Identities=24%  Similarity=0.349  Sum_probs=80.5

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHH
Q 039300          192 KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSL  271 (534)
Q Consensus       192 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L  271 (534)
                      .+|..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++   ++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence            3566677777777777777777777776666 666677777777777777777777777776655   666777777777


Q ss_pred             HHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          272 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       272 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      |+|+..++.+++++|+++ |++++.+|.  .|.||+++|..
T Consensus        81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~  118 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSY-GASRNAVNI--FGLRPVDYTDD  118 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCGGGGCCC
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHhh
Confidence            777777777777777766 667777777  77777777765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=7.3e-23  Score=173.51  Aligned_cols=127  Identities=25%  Similarity=0.342  Sum_probs=117.1

Q ss_pred             cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300          158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV  237 (534)
Q Consensus       158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  237 (534)
                      .+|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence            578899999999999999999999999999865 7788999999999999999999999999998 89999999999999


Q ss_pred             HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      |+..|+.+++++|++.+++   ++.+|..|+||||+|+..+..+++++|.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            9999999999999999887   899999999999999998888888877654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=1.1e-21  Score=175.09  Aligned_cols=140  Identities=24%  Similarity=0.288  Sum_probs=122.7

Q ss_pred             ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc-CCCCcHHHH
Q 039300          159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD-NSDRSILHV  237 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~  237 (534)
                      .+..|.||||.|+..|+.++++.|++ |.++. ..|..|.||||+|+..|+.+++++|++++++ ++.+| ..|+||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHH
Confidence            34568899999999999999999999 77655 6889999999999999999999999999998 77777 889999999


Q ss_pred             HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhch
Q 039300          238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADV  317 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~  317 (534)
                      |+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.                  .  .+.+|++++..     
T Consensus       117 A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~------------------~--~~~~~l~~a~~-----  168 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKT------------------T--PKGNPMQFGRR-----  168 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHHT------------------C--CCCSHHHHHHH-----
T ss_pred             HHhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhccC------------------c--ccccHHHHHHH-----
Confidence            9999999999999999877   899999999999999864322                  2  67899999987     


Q ss_pred             HHHHHHhHHHHHHH
Q 039300          318 TEVQKHLTLKALKT  331 (534)
Q Consensus       318 ~~~~~~~~~~~L~~  331 (534)
                        .....++++|.+
T Consensus       169 --~~~~~i~~~L~~  180 (183)
T 3deo_A          169 --IGLEKVINVLEG  180 (183)
T ss_dssp             --HHHHHHHHHHHT
T ss_pred             --cCHHHHHHHHHH
Confidence              566777777754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=2.4e-21  Score=160.76  Aligned_cols=112  Identities=25%  Similarity=0.237  Sum_probs=83.0

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300          194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL  273 (534)
Q Consensus       194 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~  273 (534)
                      +..|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++   ++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHH
Confidence            34566777777777777777777777776 677777777777777777777777777777665   77777777777777


Q ss_pred             HHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          274 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       274 A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      |+..++.+++++|+++ |++++.+|.  .|.||+++|..
T Consensus        80 A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~  115 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSK-GADKTVKGP--DGLTAFEATDN  115 (123)
T ss_dssp             HHHHTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHhCC
Confidence            7777777777777776 677777777  77777777754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=1.1e-21  Score=162.89  Aligned_cols=112  Identities=21%  Similarity=0.306  Sum_probs=103.4

Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300          160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA  239 (534)
Q Consensus       160 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  239 (534)
                      +..|.||||+|+..|+.++++.|++.|.++. ..|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence            4568899999999999999999999998865 7788999999999999999999999999998 8999999999999999


Q ss_pred             hcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300          240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM  276 (534)
Q Consensus       240 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~  276 (534)
                      ..|+.+++++|++.+++   ++.+|.+|+||||+|..
T Consensus        82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCC
T ss_pred             HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCC
Confidence            99999999999999887   89999999999999943

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=2.3e-21  Score=181.46  Aligned_cols=143  Identities=24%  Similarity=0.269  Sum_probs=127.5

Q ss_pred             cCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc-CCCCcHHHHH
Q 039300          160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD-NSDRSILHVA  238 (534)
Q Consensus       160 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A  238 (534)
                      +..|.||||+|+..|+.++++.|++ |++++ .+|..|.||||+|+..|+.+++++|++++++ ++.+| ..|+||||+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHH
Confidence            3568899999999999999999999 87655 7889999999999999999999999999999 77777 8899999999


Q ss_pred             HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchH
Q 039300          239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVT  318 (534)
Q Consensus       239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~  318 (534)
                      +.+|+.+++++|+++|++   ++.+|..|+||||+|+..++                  +.  .+.||+++|..      
T Consensus       119 ~~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~~------------------~~--~~~~~l~~a~~------  169 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------------------TT--PKGNPMQFGRR------  169 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHHT------------------TC--CCSSHHHHHHH------
T ss_pred             HHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHHh------------------cc--CCCCHHHHHHH------
Confidence            999999999999999887   89999999999999985222                  13  78999999998      


Q ss_pred             HHHHHhHHHHHHHHhhh
Q 039300          319 EVQKHLTLKALKTAYAK  335 (534)
Q Consensus       319 ~~~~~~~~~~L~~~ga~  335 (534)
                       .....++++|.+.+.+
T Consensus       170 -~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          170 -IGLEKVINVLEGQVFE  185 (244)
T ss_dssp             -HHHHHHHHHHHHHHEE
T ss_pred             -cChHHHHHHHHHhccc
Confidence             6677899999987654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=4.2e-22  Score=183.79  Aligned_cols=138  Identities=20%  Similarity=0.260  Sum_probs=116.1

Q ss_pred             hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCcH
Q 039300          156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK-YPDAIEIRDNSDRSI  234 (534)
Q Consensus       156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~  234 (534)
                      ++..+..|.||||+|+..|+.++++.|++.|+++. .+|..|.||||+|+..|+.+++++|++. +.+ ++.+|..|+||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tp  143 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTA  143 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCH
Confidence            45567789999999999999999999999998865 7788999999999999999999999998 666 89999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~  299 (534)
                      ||+|+..|+.+++++|++.|++   ++.+|.+|+||||+|+..++.++++.|+.. +++.+.+|.
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~  204 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA  204 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence            9999999999999999999887   899999999999999999999999999988 677777666

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=9.4e-21  Score=182.58  Aligned_cols=137  Identities=17%  Similarity=0.244  Sum_probs=122.3

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhcc-----cCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCcH
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAYK-----RDCNGATPLHLAAEN---GELKVLKLLINKYPDAIEIRDNSDRSI  234 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~  234 (534)
                      ..++|+.|+..|+.+.++.|++.|+++...     .+..|.||||+|+..   |+.+++++|++.+++ ++.+|..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence            457899999999999999999999987642     588999999999997   899999999999998 89999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      ||+|+..|+.+++++|++.|++   ++.+|.+|+||||+|+..++.+++++|+++ |++        .|.|||++|..
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~--------~g~tpLh~A~~  295 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAG--------TFAFPLHVDYS  295 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH--------TTSSCCC----
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC--------CCCChhHHHHh
Confidence            9999999999999999999887   899999999999999999999999999987 433        68899999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=182.19  Aligned_cols=204  Identities=16%  Similarity=0.129  Sum_probs=142.6

Q ss_pred             cCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300           44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF  123 (534)
Q Consensus        44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~  123 (534)
                      .|....+.+..+...|+.. +..+.+..............+.        ..+..+++..+..............++|+.
T Consensus        87 lD~w~~~~l~~~~~~GN~~-~n~i~E~~l~~~~~~kP~~~s~--------~~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~  157 (301)
T 2b0o_E           87 LDLLGPSELLLALNMGNTS-FNEVMEAQLPSHGGPKPSAESD--------MGTRRDYIMAKYVEHRFARRCTPEPQRLWT  157 (301)
T ss_dssp             TSCCCHHHHHHHHHCCHHH-HHHHHTTTCCSSSCSCCCTTCC--------HHHHHHHHHHHHTSCTTSCCCC-CHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCCHH-HHHHHHHhhhhccCCCCCCccc--------HHHHHHHHHHHHHhhhhhcccCchHHHHhh
Confidence            3556667788888888874 4444554322110111111111        112222322222221111112245688999


Q ss_pred             HHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc------ccCCCCcHHHHHHhC---CCHHHHHHHHhhchhhhcccC
Q 039300          124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR------LDWHQRNPLHYAAAS---GNVQMVQRLLEASKQLAYKRD  194 (534)
Q Consensus       124 A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~------~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~  194 (534)
                      |+..++.+.         +..+++..    .+++.      .+..|.||||+|+..   |+.+++++|++.|++++ .+|
T Consensus       158 A~~~g~~~~---------v~~ll~~g----~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d  223 (301)
T 2b0o_E          158 AICNRDLLS---------VLEAFANG----QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKA  223 (301)
T ss_dssp             HHHTTCHHH---------HHHHHHTT----CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCC
T ss_pred             hhhccCHHH---------HHHHHhcC----CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCC
Confidence            999999888         77777543    44555      688999999999997   89999999999999865 678


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300          195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA  274 (534)
Q Consensus       195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A  274 (534)
                      ..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.+++         .|.||||+|
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A  293 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVD  293 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC--
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHH
Confidence            9999999999999999999999999999 899999999999999999999999999998753         589999999


Q ss_pred             HhcCCh
Q 039300          275 AMGLHS  280 (534)
Q Consensus       275 ~~~~~~  280 (534)
                      +.+|+.
T Consensus       294 ~~~g~~  299 (301)
T 2b0o_E          294 YSWVIS  299 (301)
T ss_dssp             ------
T ss_pred             HhcCCc
Confidence            998864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=7.3e-21  Score=149.34  Aligned_cols=93  Identities=28%  Similarity=0.430  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||+||..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~   66 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDK   66 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCC
Confidence            48999999999999999999999999887             489999999999999999999999999999885 6799


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                      .|.||||+|+..|+.+++++|+++|++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           67 NGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=9.5e-21  Score=180.47  Aligned_cols=124  Identities=17%  Similarity=0.245  Sum_probs=115.2

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhc-----ccCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCcH
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAY-----KRDCNGATPLHLAAEN---GELKVLKLLINKYPDAIEIRDNSDRSI  234 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~  234 (534)
                      ..++|+.|+..|+.+.+..+++.|.+...     ..|..|.||||+|+..   |+.+++++|+++|++ ++.+|..|+||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCH
Confidence            34689999999999999999999997542     2478899999999999   899999999999999 89999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCc
Q 039300          235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK  290 (534)
Q Consensus       235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  290 (534)
                      ||+|+..|+.+++++|++.|++   ++.+|.+|.||||+|+..|+.+++++|++++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999987   9999999999999999999999999999984

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=1.1e-20  Score=174.23  Aligned_cols=132  Identities=23%  Similarity=0.248  Sum_probs=114.3

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC-CcccccccccCCCCCcHH
Q 039300          193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSL  271 (534)
Q Consensus       193 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~L  271 (534)
                      .+..|.||||+|+..|+.++++.|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++. +++   ++.+|..|+|||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~tpL  144 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDTAL  144 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCCHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCCHH
Confidence            466799999999999999999999999988 899999999999999999999999999998 766   899999999999


Q ss_pred             HHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          272 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       272 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      |+|+..|+.+++++|+++ |++++.+|.  .|.||+++|..       ....++++.|.+.|+....
T Consensus       145 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~-------~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAK-GARTDLRNI--EKKLAFDMATN-------AACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHH-TCCSCCCCT--TSCCHHHHCCS-------HHHHHHHC-----------
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCccccC--CCCCHHHHhcc-------hhHHHHHHHHhccchhhhc
Confidence            999999999999999998 899999999  99999999998       6678888899988887654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=3.8e-20  Score=182.38  Aligned_cols=147  Identities=20%  Similarity=0.222  Sum_probs=117.6

Q ss_pred             ccCCCCcHHHHHHhC-CCHHHHHHHHhhchhhhcccC--CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHH
Q 039300          159 LDWHQRNPLHYAAAS-GNVQMVQRLLEASKQLAYKRD--CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSIL  235 (534)
Q Consensus       159 ~d~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  235 (534)
                      .+..+.|+||.|+.. |+.++++.|++.|++++ ..+  ..|.||||+|+..|+.+++++|++++++ ++..|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            344566899999999 99999999999999876 455  7899999999999999999999999998 899999999999


Q ss_pred             HHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcc--cchhhccccCCCCChHHHhHh
Q 039300          236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS--VNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       236 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~--~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      |+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.+++++|+..+.  .+....+.  .+.|+++++..
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~--~~~t~l~i~~~  346 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA--GDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCC--CCCCHHHHHHH
Confidence            999999999999999999887   89999999999999999999999999997642  23334455  78899998876

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=2.9e-19  Score=170.19  Aligned_cols=197  Identities=17%  Similarity=0.099  Sum_probs=144.8

Q ss_pred             cCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300           44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF  123 (534)
Q Consensus        44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~  123 (534)
                      .|..+.++|+.+...|+..+.+++...-+.........+...    ......-..+++............. ...++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~-~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTA-AKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHH-HHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccc-hhhhhhhh
Confidence            678899999999999998887776544322211011111111    1122222233444333322111111 34578999


Q ss_pred             HHHhcCcchhhhhhhHHHHHHHHHHhCCChhh--hhcccCCCCcHHHHHHhC---CCHHHHHHHHhhchhhhcccCCCCC
Q 039300          124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDL--INRLDWHQRNPLHYAAAS---GNVQMVQRLLEASKQLAYKRDCNGA  198 (534)
Q Consensus       124 A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~  198 (534)
                      |+..++.+.         +..+++...+....  ++..|..|.||||+|+..   |+.+++++|+++|++++ .+|..|.
T Consensus       137 a~~~~d~~~---------~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~  206 (278)
T 1dcq_A          137 AVKTRDIFG---------LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGS  206 (278)
T ss_dssp             HHHTTCHHH---------HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCC
T ss_pred             HhhhcccHH---------HHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCC
Confidence            999999887         66666654321111  555688999999999999   89999999999999866 7899999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcc
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM  256 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~  256 (534)
                      ||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999 899999999999999999999999999998763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=1.7e-19  Score=141.51  Aligned_cols=90  Identities=44%  Similarity=0.672  Sum_probs=71.5

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHH
Q 039300          196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA  275 (534)
Q Consensus       196 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~  275 (534)
                      +|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++   ++.+|.+|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHH
Confidence            367888888888888888888888777 777888888888888888888888888887766   7778888888888888


Q ss_pred             hcCChhHHHHhhhC
Q 039300          276 MGLHSDVVFTLSRH  289 (534)
Q Consensus       276 ~~~~~~~v~~Ll~~  289 (534)
                      ..|+.+++++|+++
T Consensus        77 ~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           77 RNGHLEVVKLLLEA   90 (93)
T ss_dssp             HTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHc
Confidence            88888888888776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=1.1e-19  Score=148.73  Aligned_cols=109  Identities=31%  Similarity=0.443  Sum_probs=98.1

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHH
Q 039300          192 KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSL  271 (534)
Q Consensus       192 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L  271 (534)
                      .+|.+|.||||.|+..|+.++++.|++.+++ ++..|..|+||||+|+..++.+++++|++.+++   ++.+|..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHH
Confidence            4688999999999999999999999999988 888999999999999999999999999999876   889999999999


Q ss_pred             HHHHhcCChhHHHHhhhCcccchhhccccCCCCChH
Q 039300          272 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTL  307 (534)
Q Consensus       272 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l  307 (534)
                      |+|+..++.+++++|+++ |+++|.++.  .|.||-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~-ga~~n~~~~--~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAK-GADVNARSW--GSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTT-SSSHHHHSC--CCC---
T ss_pred             HHHHHCCCHHHHHHHHHc-CCCCCcCCc--cccccc
Confidence            999999999999999988 899999999  888773

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.79  E-value=4e-19  Score=183.85  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=94.1

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHH---hCcHHHHHHHHHcCCCCCcCCcc
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVT---KKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~---~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      +.||.|+..|+.+.|+.|++.|+++|....       ....|..|.||||+||.   .|+.++|++|+++|++++ ..|.
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn-~~d~  205 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAA  205 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT-CCCS
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCC-ccCC
Confidence            569999999999999999999999884210       11248899999999976   999999999999999985 7799


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL  132 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (534)
                      .|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.++
T Consensus       206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~-~g~tpl~~A~~~~~~~~  255 (497)
T 3lvq_E          206 DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNE-AGETALDIARKKHHKEC  255 (497)
T ss_dssp             SSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCT-TCCCHHHHHHHTTCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC-CCCCHHHHHHHcCCHHH
Confidence            999999999999999999999999887 333333 34444444444444333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=3.7e-19  Score=175.33  Aligned_cols=114  Identities=17%  Similarity=0.202  Sum_probs=85.1

Q ss_pred             CCHHHHHHhc-CCHHHHHHHHhcCccccccCchhhhhhhhcccC--CCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCc
Q 039300            3 ETPLHIAARI-GDHAIVSEIMKYVPAVNQAGSASVLETLFGMRD--IEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYIN   79 (534)
Q Consensus         3 ~T~Lh~Aa~~-g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d--~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~   79 (534)
                      .|+||.|+.. |+.++++.|+++|+++|.             .|  ..|.||||+|+..|+.++|++|+++|++++ ..|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-------------~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d  265 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNW-------------VNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QAD  265 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTC-------------CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCc-------------cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCC
Confidence            4678888888 888888888888887763             44  678888888888888888888888887775 667


Q ss_pred             cCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300           80 KAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL  132 (534)
Q Consensus        80 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (534)
                      ..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.++
T Consensus       266 ~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~-~G~TpL~~A~~~g~~~i  316 (368)
T 3jue_A          266 SAGRGPLHHATILGHTGLACLFLKRGAD-LGARDS-EGRDPLTIAMETANADI  316 (368)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCC-CCCCHHHHHHHCCCHHH
Confidence            7888888888888888888888887776 344444 55666666666666555

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=1e-18  Score=142.94  Aligned_cols=108  Identities=31%  Similarity=0.456  Sum_probs=100.4

Q ss_pred             cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300          158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV  237 (534)
Q Consensus       158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  237 (534)
                      .+|.+|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence            467889999999999999999999999999865 6789999999999999999999999999998 89999999999999


Q ss_pred             HHhcCCHHHHHHHHhCCcccccccccCCCCCcH
Q 039300          238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTS  270 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~  270 (534)
                      |+..++.+++++|+++|++   +|.++..|.||
T Consensus        82 A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGAD---VNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSS---HHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCC---CCcCCcccccc
Confidence            9999999999999999987   89999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.6e-17  Score=133.24  Aligned_cols=87  Identities=29%  Similarity=0.331  Sum_probs=77.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      .|+||||+||..|+.+++++|+++|++++             .+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-------------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~   88 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVA-------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDK   88 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCC-------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccc
Confidence            36789999999999999999999988877             478899999999999999999999999998875 6788


Q ss_pred             CCCcHHHHHHHcCcHHHHHHH
Q 039300           81 AYQTPLSIAIDVRLNDIACFI  101 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~L  101 (534)
                      .|.||||+|+..|+.+++++|
T Consensus        89 ~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHh
Confidence            899999999999999999876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=9.5e-17  Score=129.95  Aligned_cols=90  Identities=21%  Similarity=0.340  Sum_probs=62.1

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHH
Q 039300          193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH  272 (534)
Q Consensus       193 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh  272 (534)
                      .|.+|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++   ++.+|..|+||||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~   95 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFD   95 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCcHHH
Confidence            455666777777777777777777776666 666677777777777777777777777777655   6667777777777


Q ss_pred             HHHhcCChhHHHHh
Q 039300          273 LAAMGLHSDVVFTL  286 (534)
Q Consensus       273 ~A~~~~~~~~v~~L  286 (534)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            77777777776655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 9e-25
 Identities = 66/296 (22%), Positives = 117/296 (39%), Gaps = 35/296 (11%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
           TPLH+A+ +G   IV  +++   + N             + +++  TPLH      H  V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN-------------VSNVKVETPLHMAARAGHTEV 48

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
            + L++   A  +   K  QTPL  A  +   ++   +++ ++               + 
Sbjct: 49  AKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA---------------NP 92

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
            +          +   +     V  L   +     +      PLH AA  G V++ + LL
Sbjct: 93  NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 152

Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
           E           NG TPLH+A  +  L ++KLL+ +          +  + LH+AAK   
Sbjct: 153 ERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQ 210

Query: 244 WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 298
             +   +L   +     N     G T LHLAA   H+++V   LS+  + N+  K+
Sbjct: 211 VEVARSLL---QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 263

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.5 bits (231), Expect = 4e-21
 Identities = 46/265 (17%), Positives = 99/265 (37%), Gaps = 31/265 (11%)

Query: 5   PLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVI 64
           PLH+A    +  IV  ++    + +                  G TPLH    +    V 
Sbjct: 168 PLHVAVHHNNLDIVKLLLPRGGSPHS-------------PAWNGYTPLHIAAKQNQVEVA 214

Query: 65  RILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF 124
           R L++   + ++  +    TPL +A      ++   ++ K +      +    LT LH  
Sbjct: 215 RSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK--SGLTPLHLV 271

Query: 125 VMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE 184
               +               +  +L  +  +++        PLH A+  GN+++V+ LL+
Sbjct: 272 AQEGHVP-------------VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 318

Query: 185 ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW 244
                   +   G +PLH AA+ G   ++ LL+           +   + L +A + G  
Sbjct: 319 HQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYI 376

Query: 245 NIVSFILKSPEMENLINLIDRNGNT 269
           ++   +    +  + + + D++  +
Sbjct: 377 SVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 2e-20
 Identities = 81/328 (24%), Positives = 131/328 (39%), Gaps = 44/328 (13%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASV--------------------LETLF 41
           D+TPLH AARIG   +V  +++     N A +A                       E   
Sbjct: 66  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 125

Query: 42  GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFI 101
                +G TPLH        RV  +L+E+D+ P++   K   TPL +A+     DI   +
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 102 IDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161
           + +   S ++    +  T LH    +   +             + + L       N    
Sbjct: 185 LPRGG-SPHS-PAWNGYTPLHIAAKQNQVE-------------VARSLLQYGGSANAESV 229

Query: 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221
               PLH AA  G+ +MV  LL          + +G TPLHL A+ G + V  +LI    
Sbjct: 230 QGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

Query: 222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSD 281
             ++       + LHVA+ +GN  +V F+    + +  +N   + G + LH AA   H+D
Sbjct: 289 M-VDATTRMGYTPLHVASHYGNIKLVKFL---LQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 282 VVFTLSRHKSVNIRAKNRSARNNTTLEI 309
           +V  L ++   +    +      T L I
Sbjct: 345 IVTLLLKNG-ASPNEVSSD--GTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 6e-19
 Identities = 67/287 (23%), Positives = 115/287 (40%), Gaps = 34/287 (11%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           ETPLH+AAR G   +   +++    VN              +  +  TPLH      H  
Sbjct: 34  ETPLHMAARAGHTEVAKYLLQNKAKVN-------------AKAKDDQTPLHCAARIGHTN 80

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           ++++L+E ++ P+        TPL IA      +    +++K +     T+     T LH
Sbjct: 81  MVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLH 137

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                                 + ++L       N    +   PLH A    N+ +V+ L
Sbjct: 138 VAAKYGKVR-------------VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 242
           L       +    NG TPLH+AA+  +++V + L+               + LH+AA+ G
Sbjct: 185 LPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEG 242

Query: 243 NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           +  +V+ +      +   NL +++G T LHL A   H  V   L +H
Sbjct: 243 HAEMVALL---LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 3e-17
 Identities = 48/214 (22%), Positives = 76/214 (35%), Gaps = 50/214 (23%)

Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
           LT LH      +               +VK L       N  +     PLH AA +G+ +
Sbjct: 1   LTPLHVASFMGHLP-------------IVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 47

Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD--------------- 222
           + + LL+   ++   +  +  TPLH AA  G   ++KLL+    +               
Sbjct: 48  VAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

Query: 223 -----------------AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
                            +         + LHVAAK+G   +   +L   E +   N   +
Sbjct: 107 AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL---ERDAHPNAAGK 163

Query: 266 NGNTSLHLAAMGLHSDVVFTLSRHK-SVNIRAKN 298
           NG T LH+A    + D+V  L     S +  A N
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 197

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 90.6 bits (223), Expect = 6e-21
 Identities = 49/250 (19%), Positives = 92/250 (36%), Gaps = 8/250 (3%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
            T LH  A         +++ +      A  A V        D + NTPL   V  + +R
Sbjct: 34  RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-----NAMDCDENTPLMLAVLARRRR 88

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           ++  L++  + P+ Y           A +     +  ++++ +    +   L        
Sbjct: 89  LVAYLMKAGADPTIYNKSERSALHQAAANRDF-GMMVYMLNSTKLKGDIEELDRNGMTAL 147

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
             V         +   L                 +   +  R  LHYAA   N+ +V+ L
Sbjct: 148 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR-KDSEKYKGRTALHYAAQVSNMPIVKYL 206

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 242
           +        K+D +G TP+ LAA+ G ++V+  LI +    +E  D +D +   +A  + 
Sbjct: 207 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANN 265

Query: 243 NWNIVSFILK 252
           + NIV    +
Sbjct: 266 HHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.5 bits (197), Expect = 2e-17
 Identities = 46/296 (15%), Positives = 107/296 (36%), Gaps = 27/296 (9%)

Query: 3   ETPLHIA-ARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           E+P+ +     G +AI   I +   +VN             +      T LH + +    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRE--SVNI------------IDPRHNRTVLHWIASNSSA 46

Query: 62  RVIRILVEKDS-------APSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRL 114
                L+  ++       A  + ++    TPL +A+  R   +  +++   ++     + 
Sbjct: 47  EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS 106

Query: 115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASG 174
                  H     +++ +   M     +   ++ L  N      +  H       A+A  
Sbjct: 107 ERSAL--HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 164

Query: 175 NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI 234
            V+   ++              G T LH AA+   + ++K L+ +     + +D   ++ 
Sbjct: 165 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 224

Query: 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK 290
           + +AA+ G   +V +++   +    +  +D   +T+  LA    H ++V    R +
Sbjct: 225 IMLAAQEGRIEVVMYLI---QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 2e-20
 Identities = 51/264 (19%), Positives = 100/264 (37%), Gaps = 25/264 (9%)

Query: 46  IEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKS 105
           +E N  L   V  +   +++ L+E  +  +    +   TPL  A+ +   DI   ++   
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 106 SESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN 165
           +                  + ++N      +  +     ++K+  +    +N  D++   
Sbjct: 63  A---------------DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDC---------NGATPLHLAAENGELKVLKLL 216
               AA  G V+ ++ L +    +  +R            GAT L  AAE G ++VLK+L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSLHLAA 275
           +++    +   DN  R+ L  A    + + V  I     +    +N+    G T L LA 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 276 MGLHSDVVFTLSRHKSVNIRAKNR 299
              H  +V  L   + + I   + 
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDS 251

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 2e-15
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 39/199 (19%)

Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI------- 217
           + L  A  + +V +VQ+LLE    + ++ +  G TPLH A +     +++LL+       
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 218 -------------------------NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
                                          +   D    +    AA +G    + F+ K
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 253 SPEMEN-------LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNT 305
                N           + + G T+L  AA   H +V+  L      ++ A +   RN  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 306 TLEIDEMTRADVTEVQKHL 324
              +     +DV  +   L
Sbjct: 187 IHALLSSDDSDVEAITHLL 205

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 4e-15
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 40/255 (15%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLF--------------------G 42
            TPLH A ++    IV  ++++               L                      
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

Query: 43  MRDIEGNTPLHNVVTKKHKRVIRILVEKDS---------APSSYINKAYQTPLSIAIDVR 93
             D  G T           + ++ L ++ +              + K   T L  A +  
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 94  LNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNK 153
             ++   ++D+    +NA        L+H  +   +            ++ +  +L  + 
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS----------DVEAITHLLLDHG 209

Query: 154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVL 213
             +N      + PL  A    ++ +VQRLLE         D +G T L LA E    K+ 
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 214 KLLINKYPDAIEIRD 228
           +LL  +     +  D
Sbjct: 270 ELLCKRGAS-TDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 9e-15
 Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 61/291 (20%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D   L  A +  D  +V ++++    VN               +  G TPLHN V    +
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ------------EEEGGWTPLHNAVQMSRE 52

Query: 62  RVIRILVEKDSAPSSYI--------------------------------NKAYQTPLSIA 89
            ++ +L+   + P                                    +    T    A
Sbjct: 53  DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

Query: 90  IDVRLNDIACFIIDKSSESLNATRLPDEL--------TLLHFFVMRQNYDLSKSMQFLQF 141
                     F+  + +      +  ++         T L     + + ++         
Sbjct: 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV--------- 163

Query: 142 IDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL 201
           + I++  +G + +  + +  +       ++   +V+ +  LL         R   G TPL
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

Query: 202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
            LA E   L +++ L+ +    I   D+  ++ L +A +     I   + K
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.7 bits (208), Expect = 8e-19
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 6/199 (3%)

Query: 45  DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
           D  GNTPLH + +  +  +++ LV+   +   Y +   ++ L  A+    N  +      
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 162

Query: 105 SSESLNATRLPDEL--TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWH 162
                    L D +  T+LH  ++        +        +M  I+      I      
Sbjct: 163 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 222

Query: 163 QRNPLHYAAASGNVQMVQRLL--EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKY 220
           + +  +         +++ L        +   +D NG T L++AA  G + ++  L++  
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

Query: 221 PDAIEIRDNSDRSILHVAA 239
            D   I + S    +   A
Sbjct: 283 AD-PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.9 bits (185), Expect = 8e-16
 Identities = 44/265 (16%), Positives = 80/265 (30%), Gaps = 30/265 (11%)

Query: 50  TPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESL 109
             L  ++  + + +   L    S  +S    + Q    ++ D  L ++     +     L
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-L 99

Query: 110 NATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHY 169
           N        T LH+     N +             +VK L  +       D    + L  
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLE-------------LVKHLVKHGSNRLYGDNMGESCLVK 146

Query: 170 AAASGNVQMVQRLLEASKQLAY---KRDCNGATPLHLAAENGELK------------VLK 214
           A  S N             L       D    T LH       +             ++ 
Sbjct: 147 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 206

Query: 215 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274
            ++ K    I+   N   S  +        +I+  +     + N++N  D NG+T L++A
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 275 AMGLHSDVV-FTLSRHKSVNIRAKN 298
           A   +  +V   L       I  K+
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKS 291

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 6e-12
 Identities = 37/235 (15%), Positives = 70/235 (29%), Gaps = 5/235 (2%)

Query: 110 NATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDI--MVKILGTNKDLINRLDWHQRNPL 167
           +  ++   L         Q   L   +Q L F +I  M   L  +    N          
Sbjct: 17  SPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQ 76

Query: 168 HYAAASGNVQMVQRLLEASK-QLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
            + +    +Q V      ++  L    D +G TPLH       L+++K L+    +    
Sbjct: 77  QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLY 135

Query: 227 RDNSDRSILHVA-AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT 285
            DN   S L  A     N++  +F      +   + L D    T LH   +         
Sbjct: 136 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA 195

Query: 286 LSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSA 340
            +++    +       +N           +   +         L+    K  ++ 
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 250

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           E+  +        +I+  +              ++  +   +D  G+T L+      +  
Sbjct: 224 ESKPNDKNGERKDSILENL----------DLKWIIANMLNAQDSNGDTCLNIAARLGNIS 273

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAI 90
           ++  L++  + P    NK+   P+    
Sbjct: 274 IVDALLDYGADPFI-ANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.8 bits (187), Expect = 1e-16
 Identities = 43/249 (17%), Positives = 76/249 (30%), Gaps = 26/249 (10%)

Query: 4   TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
            PLH A    +   V E++   P++               +D +G  PLH  V+ +   +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQ------------KDQDGRIPLHWSVSFQAHEI 49

Query: 64  IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
              L+ K    +              I   + ++                      +   
Sbjct: 50  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 109

Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
            +         S   ++    +              D   + PLH AA+ G++++++ L 
Sbjct: 110 HLAVGKKWFEVSQFLIENGASV-----------RIKDKFNQIPLHRAASVGSLKLIELLC 158

Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
              K     +D  G TPL  A   G      LL+ KY    ++ DN       VA     
Sbjct: 159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-- 216

Query: 244 WNIVSFILK 252
             +  F L 
Sbjct: 217 -QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 6e-08
 Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 26/221 (11%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
             PLH +     H I S ++  +  VN                                 
Sbjct: 35  RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 94

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
              +    +   +       +    ++  +  N  +  I DK ++             LH
Sbjct: 95  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ-----------IPLH 143

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                 +  L + +  L    +  +            D     PL +A A G+      L
Sbjct: 144 RAASVGSLKLIELLCGLGKSAVNWQ------------DKQGWTPLFHALAEGHGDAAVLL 191

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           +E         D  GA    +A      +V K  +N   DA
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
           LH A     +  V  +L S    +L+   D++G   LH +      ++   L   
Sbjct: 4   LHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 8e-16
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 21/235 (8%)

Query: 49  NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES 108
           N  + N+        ++  +  D + ++  ++  +T L  A      +I  F++      
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV-- 61

Query: 109 LNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLH 168
                                      +      D +VK L      +N ++ +   PLH
Sbjct: 62  -------------PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLH 108

Query: 169 YAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD 228
           YAA+    ++   LLE        +D   AT +H AA  G LK++ +L+        I+D
Sbjct: 109 YAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQD 166

Query: 229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
               + LH+A           ++        I + ++   T L +A  G    ++
Sbjct: 167 TEGNTPLHLACDEERVEEAKLLV---SQGASIYIENKEEKTPLQVAKGG-LGLIL 217

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 2e-12
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 39/210 (18%)

Query: 142 IDIMVKILGTNKDLINRLDWHQRNPLHYAAASG--------------------------- 174
           ++ + + +  +K L  R D   R  LH+A ++G                           
Sbjct: 16  LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 75

Query: 175 -----NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
                    + + L          + NG TPLH AA     ++  +L+    +  + +D+
Sbjct: 76  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDH 134

Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
            + + +H AA  GN  ++  +      +   N+ D  GNT LHLA      +    L   
Sbjct: 135 YEATAMHRAAAKGNLKMIHIL---LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 191

Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTE 319
              +I  +N+     T L++ +     + +
Sbjct: 192 G-ASIYIENKE--EKTPLQVAKGGLGLILK 218

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 5e-12
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 5/137 (3%)

Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
           +   A SG ++ ++  + A K LA + D +  T LH A   G    +   + +    +  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH-TEIVEFLLQLGVPVND 65

Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286
           +D++  S LH+AA  G   IV  +L        +N +++NG T LH AA     ++   L
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQ---VNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 287 SRHKSVNIRAKNRSARN 303
                 N  AK+     
Sbjct: 123 LEGG-ANPDAKDHYEAT 138

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 2e-11
 Identities = 48/252 (19%), Positives = 99/252 (39%), Gaps = 31/252 (12%)

Query: 1   MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
           +    +   A  G    + E +    ++                D +  T LH   +  H
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATR------------TDQDSRTALHWACSAGH 49

Query: 61  KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120
             ++   + +   P +  + A  +PL IA     ++I   ++ K ++     +  +  T 
Sbjct: 50  TEIVEF-LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ--NGCTP 106

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQ 180
           LH+   +  ++             +  +L       +  D ++   +H AAA GN++M+ 
Sbjct: 107 LHYAASKNRHE-------------IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 153

Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
            LL         +D  G TPLHLA +   ++  KLL+++    I I +  +++ L VA  
Sbjct: 154 ILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVAKG 211

Query: 241 HGNWNIVSFILK 252
            G   I+  +++
Sbjct: 212 -GLGLILKRMVE 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 1e-15
 Identities = 40/245 (16%), Positives = 84/245 (34%), Gaps = 22/245 (8%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           +TPLHIA   G+   V  ++         G   +      + +    TPLH +       
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQ----QGGREL-----DIYNNLRQTPLH-LAVITTLP 53

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
            +  L+    A    +++  QT   +A + R       ++D ++                
Sbjct: 54  SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL-----------D 102

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                 +   +  +         V++L      I+ +D          A   N   + +L
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 162

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 242
           L         +  +G++ LH A+  G L +++ L+    D   +++  + + L VA    
Sbjct: 163 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRR 221

Query: 243 NWNIV 247
             +I+
Sbjct: 222 VIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 3e-12
 Identities = 44/240 (18%), Positives = 90/240 (37%), Gaps = 18/240 (7%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA---YQTPLSIAIDVRLNDIACFIID 103
           +G+TPLH  V + +   +  LV         ++      QTPL +A+   L  +   ++ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
             +  +                 +    L+   +    +  ++         +   ++  
Sbjct: 62  AGASPMA-----------LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 110

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
              LH A  +   + VQ LLE    +      +G +PL  A EN  L +++LL+    + 
Sbjct: 111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 170

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
                +   S LH A+  G   +V  +++S       +L + + +T L +A      D++
Sbjct: 171 NAQMYS-GSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDIL 226

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 75.7 bits (185), Expect = 1e-15
 Identities = 32/294 (10%), Positives = 67/294 (22%), Gaps = 44/294 (14%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           E    +AA  G     S  +  +  +  +    V      +   E            H  
Sbjct: 91  EVICFVAAITGC----SSALDTLCLLLTSD-EIV-----KVIQAENYQAFRLAAENGHLH 140

Query: 63  VIRILVEKDSAP-SSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
           V+  L E       + I         +A +     +   + + +     A    +     
Sbjct: 141 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 200

Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
            +  + + +              ++  L                   +    G   +   
Sbjct: 201 RWAAVGRGHH------------NVINFLLDC-------PVMLAYAEIHEFEYGEKYVNPF 241

Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
           +          R         L+  +G   ++                     L      
Sbjct: 242 IARH-----VNRLKEMHDAFKLSNPDGVFDLVTKSECLQ-------GFYMLRNLIRRNDE 289

Query: 242 GNWNIVSFILKSPEMENL--INLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN 293
              + + F+L  P ++ L     I  + N  L LA    +      L    SV 
Sbjct: 290 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.1 bits (173), Expect = 5e-14
 Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 20/213 (9%)

Query: 128 QNYDLSKSMQFLQ---FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL- 183
           +NY+    ++ +    + ++    +  N+  +  L + +   +         Q+ Q L  
Sbjct: 8   ENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCL 67

Query: 184 ------EASKQL---AYKRDCNGATPLHLAAENG---ELKVLKLLINKYPDAIEIRDNSD 231
                   +KQL   A+K+         +AA  G    L  L LL+      +++    +
Sbjct: 68  YYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAEN 126

Query: 232 RSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS 291
                +AA++G+ ++++ + +    E +   I      +  LAA   H  V+  L     
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAM-IQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 292 VNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
               A  ++                   V   L
Sbjct: 186 TEATAMIQAENYYAFR--WAAVGRGHHNVINFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.1 bits (160), Expect = 2e-12
 Identities = 29/228 (12%), Positives = 64/228 (28%), Gaps = 26/228 (11%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           +     +AA  G   +++ + +  P    A           M   E            H 
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMA-----------MIQAENYHAFRLAAENGHL 174

Query: 62  RVIRILVEKDSAPSSYINKA--YQTPLSIAIDVRLNDIACFIIDK-----SSESLNATRL 114
            V+  L E     ++ + +A  Y      A+    +++  F++D       +E       
Sbjct: 175 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYG 234

Query: 115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASG 174
              +       + +  ++  + +      +                ++    L       
Sbjct: 235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGV----FDLVTKSECLQGFYMLRNLIRRNDEV 290

Query: 175 NVQMVQRLLE--ASKQLAYKRDC--NGATPLHLAAENGELKVLKLLIN 218
            +  ++ LL     K LA       +    L LA   G      LL++
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 13/153 (8%)

Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHL 203
            + +L T+ +++  +          AA +G++ ++ RL E    ++             L
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 167

Query: 204 AAENGELKVLKLLINKYPDAIE--IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
           AAENG L VL  L    P      I+  +  +    A   G+ N+++F+L  P       
Sbjct: 168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP------- 220

Query: 262 LIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNI 294
                   +           V   ++RH +   
Sbjct: 221 ---VMLAYAEIHEFEYGEKYVNPFIARHVNRLK 250

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.0 bits (180), Expect = 4e-15
 Identities = 47/271 (17%), Positives = 99/271 (36%), Gaps = 30/271 (11%)

Query: 2   DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
           D      A   GD   V  +++    +N               +++G T LH      + 
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINY-------------ANVDGLTALHQACIDDNV 86

Query: 62  RVIRILVEKDSAPSSYINKAYQTPLSIAIDVR------LNDIACFIIDKSSESLNATRLP 115
            +++ LVE  +  +   N+ +    + A          L      +   +SE      + 
Sbjct: 87  DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

Query: 116 DELTLLHFFVMRQNYDLSKSMQFL-----QFIDIMVKILGTNKDLINRLDWHQRNPLHYA 170
           +E  +        N                 +    + L +      R        LH A
Sbjct: 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206

Query: 171 AASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS 230
           AA G  ++++ L++A   +   +D +G TPLH AA  G+ +  ++L+    D +E  +  
Sbjct: 207 AAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKV 264

Query: 231 DRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
            ++   VA +    +I+ ++ +  + +NL++
Sbjct: 265 GQTAFDVADE----DILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.5 bits (145), Expect = 9e-11
 Identities = 38/240 (15%), Positives = 75/240 (31%), Gaps = 16/240 (6%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSS 106
           +         +      +  L+E+  A  +Y N    T L  A      D+  F+++  +
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 107 ESLNATRLPDELTLLHFFVMRQNYD--LSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
                                 +    L      +  ++          +     +  Q 
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 165 NPLHY---------AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
                               ++  ++ L +      +   +G T LH+AA  G  +VLKL
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 216 LINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA 275
           LI    D + I+D    + LH AA  G       ++   E    +  +++ G T+  +A 
Sbjct: 218 LIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV---ENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 186 SKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 245
            K+   K   +       A  +G+ + +  L+ +  D I   +    + LH A    N +
Sbjct: 29  VKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVD 87

Query: 246 IVSFI 250
           +V F+
Sbjct: 88  MVKFL 92

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 25/166 (15%), Positives = 59/166 (35%), Gaps = 5/166 (3%)

Query: 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
           ++ +        A +SG+ + V RLLE    + Y  + +G T LH A  +  + ++K L+
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLV 93

Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMG 277
               +  +  +     +   A+                    +  ++  G+T L +A   
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYL----ISQGAHVGAVNSEGDTPLDIAEEE 149

Query: 278 LHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKH 323
              +++      + V+I A  +        +  +   +      +H
Sbjct: 150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 7e-14
 Identities = 40/252 (15%), Positives = 85/252 (33%), Gaps = 7/252 (2%)

Query: 40  LFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSS--YINKAYQTPLSIAIDVRLNDI 97
           +FG    +G+T LH  V  +H+  +  L+   +        N   QT L +A    L + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA--AILGEA 58

Query: 98  ACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLIN 157
           +      ++ +          T LH     + +  +  +   +                +
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
                   P    +        +   E  +      + +G TPLH+A  + + ++++LL 
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMG 277
           +   D  +      R+ LH+A +    +++  +L   +           G T L  A + 
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL---KAGADPTARMYGGRTPLGSALLR 235

Query: 278 LHSDVVFTLSRH 289
            +  +   L  H
Sbjct: 236 PNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (163), Expect = 3e-13
 Identities = 42/250 (16%), Positives = 74/250 (29%), Gaps = 13/250 (5%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           +T LH+A        +  ++ +                  +++  G T LH         
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEY----------LDLQNDLGQTALHLAAILGEAS 59

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
            +  L    +         +     +A  VR +  AC ++                    
Sbjct: 60  TVEKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                 +   +   Q     +   +        +   ++    PLH A    + +MV+ L
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 242
            +A   L       G TPLHLA E     VL+LL+    D    R    R+ L  A    
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRP 236

Query: 243 NWNIVSFILK 252
           N  +   +  
Sbjct: 237 NPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 5e-10
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 192 KRDCNGATPLHLAAENGELKVLKLLINK--YPDAIEIRDNSDRSILHVAAKHGNWNIVSF 249
               +G T LHLA  +     L  L+      + ++++++  ++ LH+AA  G  + V  
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 250 ILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
           +         + + +R G+T+LHLA           L + +  + R  +
Sbjct: 64  L---YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 1e-13
 Identities = 31/229 (13%), Positives = 71/229 (31%), Gaps = 19/229 (8%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           ++ LH+A    + A+  E+++ V        A +       ++    TPLH  V      
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDL----AFL-----NFQNNLQQTPLHLAVITNQPE 53

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
           +   L+     P     +             L  +       ++  L++           
Sbjct: 54  IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI---------L 104

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
                  +          ++ I+  ++    D+  +   + R  LH A    N  +V  L
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSD 231
           L+       +    G +P  L       ++ + L     + +++   S+
Sbjct: 165 LKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 9e-12
 Identities = 36/227 (15%), Positives = 80/227 (35%), Gaps = 14/227 (6%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYIN---KAYQTPLSIAIDVRLNDIACFIID 103
           +G++ LH  +  + K +   ++ +     +++N      QTPL +A+     +IA  ++ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
              +                     +    +       +            ++   +++ 
Sbjct: 61  AGCDPELRD---------FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 111

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
              LH A+  G + +V+ L+     +  +  CNG T LHLA +     ++ LL+    D 
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD- 170

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTS 270
           +        S   +     +  I   + +   +ENL  L +     S
Sbjct: 171 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEES 216

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.1 bits (136), Expect = 6e-10
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 17/206 (8%)

Query: 44  RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIID 103
            D  G T LH           + L++  +  +S  N                        
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT---------------PLHAA 63

Query: 104 KSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ 163
            +++++   ++       +      +      +     I+ MV+ L T    IN  D   
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 123

Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
           +  LH+AAA  N + V  L          +D    TPL LAA  G  +  K L++ + + 
Sbjct: 124 KTALHWAAAVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN- 181

Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSF 249
            EI D+ DR    VA++  + +IV  
Sbjct: 182 REITDHMDRLPRDVASERLHHDIVRL 207

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 7e-07
 Identities = 38/223 (17%), Positives = 79/223 (35%), Gaps = 19/223 (8%)

Query: 61  KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120
            +VI  L+ + +  ++ ++K  +T L +A      D A  ++D  +              
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA-------------- 47

Query: 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQ 180
                                   + +IL  N+        H        AA   ++ + 
Sbjct: 48  -DANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMV 106

Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
             L  +       D +G T LH AA     + + +L+  + +  + +D+ D + L +AA+
Sbjct: 107 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAR 165

Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
            G++     +L   +      + D        +A+  LH D+V
Sbjct: 166 EGSYEASKALL---DNFANREITDHMDRLPRDVASERLHHDIV 205

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 30/214 (14%), Positives = 57/214 (26%), Gaps = 29/214 (13%)

Query: 3   ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
           ET LH+AAR         ++                               +        
Sbjct: 24  ETSLHLAARFARADAAKRLLDAGA--------------DANSQDNTGRTPLHAAVAADAM 69

Query: 63  VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
            +  ++ ++ A +        T   I       +     +  +   +NA     +  L  
Sbjct: 70  GVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHW 129

Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
              +                   V IL  +    +  D     PL  AA  G+ +  + L
Sbjct: 130 AAAVNNTE--------------AVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 175

Query: 183 LEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
           L+         D     P  +A+E     +++LL
Sbjct: 176 LDNFANR-EITDHMDRLPRDVASERLHHDIVRLL 208

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 15/127 (11%), Positives = 38/127 (29%), Gaps = 12/127 (9%)

Query: 165 NPLHYAAASGNVQMVQRLLEA-----SKQLAYKRDCNGATPLHLAAENGE---LKVLKLL 216
           + L  A  + ++  + +          K           T LHLA  + +   L ++  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
           +    +  +       ++ +         +   +     +     + + +G T L +A  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI----EIANESGETPLDIAKR 123

Query: 277 GLHSDVV 283
             H    
Sbjct: 124 LKHEHCE 130

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 22/157 (14%)

Query: 84  TPLSIAID-VRLNDIACFI------IDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSM 136
             L    + V+  DI   +      +D + +   A     + T LH  V   +      +
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 137 QFLQFI--DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRD 194
            FL     ++  +    +  L           L           +              +
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-------------N 111

Query: 195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSD 231
            +G TPL +A         +LL            + +
Sbjct: 112 ESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 148

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 7e-07
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 18/171 (10%)

Query: 48  GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE 107
               L     +   + +R L+ ++      +N+  +T L + +          +   +  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA-- 59

Query: 108 SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPL 167
                            V   +                +K+L  +   +N  D     P+
Sbjct: 60  --------------SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105

Query: 168 HYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
           H A   G+  +V  L   S    ++RD  G TPL LA + G   ++ +L  
Sbjct: 106 HLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 35/156 (22%)

Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD-- 222
           + L  AAA G+VQ V+RLL          +  G T L +         L+LL        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 223 -----------------------------AIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
                                         + + D +    +H+A + G+  +VSF+   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 254 PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
            +    ++  D  G T L LA      D+V  L  H
Sbjct: 124 SD----LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (102), Expect = 7e-06
 Identities = 20/170 (11%), Positives = 50/170 (29%), Gaps = 18/170 (10%)

Query: 47  EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSS 106
           +    L           +RIL+   +  ++         L+                 S 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 107 ESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNP 166
           +                  + +      + +    I  ++   G +   +N  D  +   
Sbjct: 61  D--------------ARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTA 103

Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
           LH+A    + ++V+ LL       + +     T   ++ +NG   + ++L
Sbjct: 104 LHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 18/148 (12%), Positives = 38/148 (25%), Gaps = 33/148 (22%)

Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
            L  AA +G    V+ L+                 L     +     + L      DA  
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 226 IRDNSDRSI------------------------------LHVAAKHGNWNIVSFILKSPE 255
             D +   +                              LH A +H +  +V  +    +
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL---IK 121

Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVV 283
               ++   +   T+  ++    + D+ 
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLA 149

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
           D     PLH AA  G++++V+ L++ +      R+  G T   LA   G  +V+ L+   
Sbjct: 96  DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 28/153 (18%)

Query: 165 NPLHYAAASGNVQMVQRLLEA----------------------------SKQLAYKRDCN 196
           N L  AAA G+++ +  LL+                                     D  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256
             T   +  +      L  L        ++    +   L +       ++          
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 257 ENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
            + +   +  G+T+  LA +   ++VV  +  +
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 4e-04
 Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 5/119 (4%)

Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAI 224
           + L  AAA G V+ V+ LLEA                 +   +  +              
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA-----ELLLLHGA 59

Query: 225 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
           E       ++            +  ++        +++ D  G   + LA    H DV 
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 10/111 (9%), Positives = 28/111 (25%), Gaps = 5/111 (4%)

Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAI 224
               +A  +G++  V+  +   + +    +       + A            +       
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-----LEFLLLKG 58

Query: 225 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA 275
              +  D+  +           VS +           +   +G T+L    
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=342.25  Aligned_cols=288  Identities=24%  Similarity=0.323  Sum_probs=232.8

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCC
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY   82 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g   82 (534)
                      -||||+||..|+.++|++|+++|+++|.             +|..|+||||+|+.+|+.++|++|+++|+++. ..+.+|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~-------------~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~-~~~~~g   66 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNV-------------SNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDD   66 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCC-------------SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTS
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCC-------------CCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCC
Confidence            3999999999999999999999999884             89999999999999999999999999999875 789999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCCC--------------------------------cccCCCCCCchHHHHHHHhcCc
Q 039300           83 QTPLSIAIDVRLNDIACFIIDKSSES--------------------------------LNATRLPDELTLLHFFVMRQNY  130 (534)
Q Consensus        83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~  130 (534)
                      .||||+|+..|+.+++++|+....+.                                ....+. .+.++++.|+..++.
T Consensus        67 ~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~  145 (408)
T d1n11a_          67 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKV  145 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhccccccccccccccccccccc-ccchHHHHHHHcCCH
Confidence            99999999999999999999876641                                111222 566777788777777


Q ss_pred             chhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhh--------------------
Q 039300          131 DLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLA--------------------  190 (534)
Q Consensus       131 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~--------------------  190 (534)
                      ++         ++.+++..    ..++..+.+|.+|||+|+..|+.+++++|+++|+++.                    
T Consensus       146 ~~---------v~~ll~~~----~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~  212 (408)
T d1n11a_         146 RV---------AELLLERD----AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE  212 (408)
T ss_dssp             HH---------HHHHHHTT----CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HH---------HHHHHHcC----CCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhh
Confidence            76         55555542    4556666677777777777777777777776655321                    


Q ss_pred             ---------------------------------------------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccc
Q 039300          191 ---------------------------------------------YKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE  225 (534)
Q Consensus       191 ---------------------------------------------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  225 (534)
                                                                   +..+..|.||++.|++.++.+++++|++++++ ++
T Consensus       213 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~  291 (408)
T d1n11a_         213 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VD  291 (408)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TT
T ss_pred             hhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cc
Confidence                                                         01344566777777777788888888888777 67


Q ss_pred             cccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCC
Q 039300          226 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNT  305 (534)
Q Consensus       226 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t  305 (534)
                      ..+..+.||||.++..++.++++++++.|++   +|.+|.+|+||||+|+++|+.+++++|+++ |+|++.+|.  +|+|
T Consensus       292 ~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~---in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~--~G~t  365 (408)
T d1n11a_         292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSS--DGTT  365 (408)
T ss_dssp             CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCS--SSCC
T ss_pred             cccccccccchhhcccCcceeeeeecccccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCC--CCCC
Confidence            7777888888888888888888888888776   899999999999999999999999999998 899999999  9999


Q ss_pred             hHHHhHhhhhchHHHHHHhHHHHHHHH
Q 039300          306 TLEIDEMTRADVTEVQKHLTLKALKTA  332 (534)
Q Consensus       306 ~l~~a~~~~~~~~~~~~~~~~~~L~~~  332 (534)
                      ||++|..       ..+..++++|...
T Consensus       366 ~L~~A~~-------~~~~~iv~~L~~~  385 (408)
T d1n11a_         366 PLAIAKR-------LGYISVTDVLKVV  385 (408)
T ss_dssp             HHHHHHH-------TTCHHHHHHHHHH
T ss_pred             HHHHHHH-------cCCHHHHHHHHHH
Confidence            9999988       3344566666433

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=292.79  Aligned_cols=242  Identities=17%  Similarity=0.184  Sum_probs=155.4

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK   80 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~   80 (534)
                      +|+||||+||++|+.+++++|+++|+++.          .++.+|..|.||||+||.+|+.+++++|+++|+++. ..|.
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~----------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~   76 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHE----------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAER   76 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSG----------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------cccCcCCCCCCccchHHhhccccccccccccccccc-cccc
Confidence            59999999999999999999999988754          455689999999999999999999999999999985 6799


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      +|.||||+|+..++.+++++|++..........     ............+.                            
T Consensus        77 ~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------------------  123 (255)
T d1oy3d_          77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDAS-----DTYLTQSQDCTPDT----------------------------  123 (255)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------
T ss_pred             ccchhhhhhhccCchHHHHHHHhhccchhcccc-----hhhhhHHhhhcccc----------------------------
Confidence            999999999999999999999988765211111     00000000000000                            


Q ss_pred             CCCCcHHHHHHhCCC-HHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300          161 WHQRNPLHYAAASGN-VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA  239 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  239 (534)
                        ...++........ ..........+.. .+.+|..|.||||+|++.++.+++++|++.+.+.....+..|.||||+|+
T Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~  200 (255)
T d1oy3d_         124 --SHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV  200 (255)
T ss_dssp             ----------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             --hHHHHHHHhhcchhHHHHHHhhhcCcc-cccccccCcccccccccccccccccchhcccccccccccccccccccccc
Confidence              0000000000000 1111111222222 22456666666666666666666666666666644445556666666666


Q ss_pred             hcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc
Q 039300          240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN  293 (534)
Q Consensus       240 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  293 (534)
                      +.|+.+++++|+++|++   ++.+|.+|+||||+|+..++.+++++|+++ |++
T Consensus       201 ~~~~~~~v~~Ll~~gad---in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         201 EAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAH-GAP  250 (255)
T ss_dssp             HTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred             cccHHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCC
Confidence            66666666666666655   666666666666666666666666666666 454

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-36  Score=302.20  Aligned_cols=279  Identities=26%  Similarity=0.346  Sum_probs=202.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchh--------------hhh----------------------------
Q 039300            1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSAS--------------VLE----------------------------   38 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~--------------~~~----------------------------   38 (534)
                      .|+||||+||+.|+.++|++|+++|++++......              ..+                            
T Consensus        32 ~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  111 (408)
T d1n11a_          32 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH  111 (408)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcc
Confidence            38999999999999999999999999887421100              000                            


Q ss_pred             -----------hhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300           39 -----------TLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE  107 (534)
Q Consensus        39 -----------~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  107 (534)
                                 .....+|..|.++|+.|+..++.++++.|+++|+++. ..+.+|.+||++|+..|+.+++++|++++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~  190 (408)
T d1n11a_         112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  190 (408)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             cccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCc
Confidence                       0112233444555555555555555555555555543 4455666777777777777777777776665


Q ss_pred             CcccCCCCCCchHHHHHHHhcCcchhhhhh---------------hHH-----HHHHHHHHhCCChhhhhcccCCCCcHH
Q 039300          108 SLNATRLPDELTLLHFFVMRQNYDLSKSMQ---------------FLQ-----FIDIMVKILGTNKDLINRLDWHQRNPL  167 (534)
Q Consensus       108 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~---------------~~~-----~~~~ll~~~~~~~~~~~~~d~~g~tpL  167 (534)
                       ++..+. .|.||+|.++.....+....+.               .+.     .-..+++.....+...+..+..|.||+
T Consensus       191 -~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l  268 (408)
T d1n11a_         191 -PHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL  268 (408)
T ss_dssp             -SCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHH
T ss_pred             -ccccCC-CCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChh
Confidence             333333 5555555555544443311100               000     001112222223345667788899999


Q ss_pred             HHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHH
Q 039300          168 HYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV  247 (534)
Q Consensus       168 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~  247 (534)
                      +.|+..++.+++++|++.|+++. ..+..+.||||.++..++.++++.+++.+.+ ++.+|.+|+||||+|+++|+.+++
T Consensus       269 ~~a~~~~~~~i~~~Ll~~g~~~~-~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv  346 (408)
T d1n11a_         269 HLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIV  346 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTT-CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             hhhhhcCcHHHHHHHHHCCCccc-cccccccccchhhcccCcceeeeeecccccc-ccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999865 6677899999999999999999999999998 899999999999999999999999


Q ss_pred             HHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          248 SFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       248 ~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      ++|+++|++   +|.+|.+|+||||+|+++|+.+++++|.
T Consensus       347 ~~Ll~~GAd---~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         347 TLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHHHTTCC---SCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999987   9999999999999999999999998764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=282.88  Aligned_cols=268  Identities=21%  Similarity=0.239  Sum_probs=229.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |+|+||.|++.|+.++|++|+++|+++|.            ..+..|.||||+|+.+|+.+++++|++.++... ..+..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~------------~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-~~~~~   71 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNF------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKN   71 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCc------------cCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-ccccc
Confidence            67999999999999999999999999884            245689999999999999999999999998775 56778


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCC------Chhh
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGT------NKDL  155 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~  155 (534)
                      +.+|.+.|+..+..+...+.++...+. ...+. .+.++++.|+..++...         +..++.....      ....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  140 (285)
T d1wdya_          72 GATPFLLAAIAGSVKLLKLFLSKGADV-NECDF-YGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKED  140 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCT-TCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCCHH
T ss_pred             cchhhHHHhhcCCccccchhhhhcccc-ccccc-CCCchhHHHHHhcchhh---------hhhhhhhcccccccccchhh
Confidence            999999999999999999999987763 33344 88999999999998877         6666654321      2233


Q ss_pred             hhcccCCCCcHHHHHHhCCCHHHHHHHHhh-chhhhcccCCCCCcHHHHHHHc----CcHHHHHHHHHhCCCccccccCC
Q 039300          156 INRLDWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHLAAEN----GELKVLKLLINKYPDAIEIRDNS  230 (534)
Q Consensus       156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~d~~  230 (534)
                      ....+..|.||||+|+..|+.+++++|++. |+++ +..+..|.++++.+...    +..++++.|++++++ ++.+|..
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~  218 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGER  218 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTT
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCC
Confidence            455677899999999999999999999976 5554 47788899888776543    456799999999999 8999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhC-CcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300          231 DRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR  299 (534)
Q Consensus       231 g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~  299 (534)
                      |+||||+|++.|+.+++++|++. +.+   +|.+|.+|+||||+|++.|+.+++++|+++ |+|+|++|.
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~g~d---in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHcCCCC---CcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcccC
Confidence            99999999999999999999985 555   999999999999999999999999999998 899999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=271.31  Aligned_cols=220  Identities=21%  Similarity=0.291  Sum_probs=190.5

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      +++.||.+|..|+.+.|+.+++...            .+++.+|..|+||||+|+..|+.+++++|++.+.+.. ..+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~------------~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~   69 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADK------------SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDA   69 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCG------------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCC------------CcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-ccccc
Confidence            5788999999999999988876633            2344689999999999999999999999999987765 55677


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      +.++++.|+..++.+++++|++++++                                                ++..|.
T Consensus        70 ~~~~~~~~~~~~~~~i~~~Ll~~~~d------------------------------------------------~~~~d~  101 (223)
T d1uoha_          70 GWSPLHIAASAGRDEIVKALLGKGAQ------------------------------------------------VNAVNQ  101 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCCT
T ss_pred             ccccccccccccccchhHHHhccCce------------------------------------------------eEeeCC
Confidence            88999999999999999999987754                                                244566


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  241 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  241 (534)
                      .|.||||+|+..|+.+++++|+++|.++. ..+..|.||||.|+..++.++++.|.+.+.+ ++.+|.+|+||||+|+..
T Consensus       102 ~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~  179 (223)
T d1uoha_         102 NGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDE  179 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred             CCCchhhHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCccchhhhhcCCcchhhhhccccce-eeeccCCCCceecccccc
Confidence            78899999999999999999999998765 6788999999999999999999999998888 899999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300          242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR  288 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  288 (534)
                      |+.+++++|++.|++   ++.+|.+|+||||+| ..|+.+++++|++
T Consensus       180 g~~~~v~~LL~~Gad---~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         180 ERVEEAKLLVSQGAS---IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TCHHHHHHHHHTTCC---SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CcHHHHHHHHHCCCC---CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            999999999999887   899999999999988 4688899998885

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-35  Score=275.51  Aligned_cols=231  Identities=15%  Similarity=0.113  Sum_probs=164.4

Q ss_pred             ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC--cCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchH
Q 039300           43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS--SYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL  120 (534)
Q Consensus        43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~  120 (534)
                      ..|++|+||||+||++|+.+++++|+++|+++.  +..|..|.||||+|+..|+.+++++|+++|++ ++..+. +|.||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-i~~~d~-~g~tp   81 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAER-GGHTA   81 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCT-TSCCH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc-cccccc-ccchh
Confidence            468999999999999999999999999987643  46788999999999999999999999999987 666776 99999


Q ss_pred             HHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcH
Q 039300          121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP  200 (534)
Q Consensus       121 L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  200 (534)
                      ||+|+..++.++         ++.+++.....       +................+                  ....+
T Consensus        82 L~~A~~~~~~~~---------~~~Ll~~~~~~-------~~~~~~~~~~~~~~~~~~------------------~~~~~  127 (255)
T d1oy3d_          82 LHLACRVRAHTC---------ACVLLQPRPSH-------PRDASDTYLTQSQDCTPD------------------TSHAP  127 (255)
T ss_dssp             HHHHTTTTCHHH---------HHHHSSSCCSS-------CCCC-------------------------------------
T ss_pred             hhhhhccCchHH---------HHHHHhhccch-------hcccchhhhhHHhhhccc------------------chHHH
Confidence            999999999887         55555432211       111111111110000000                  01111


Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300          201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS  280 (534)
Q Consensus       201 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~  280 (534)
                      +..............+.......++.+|..|+||||+|+.+++.+++++|++.+...  .+..+..|.||||+|++.++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~TpL~~A~~~~~~  205 (255)
T d1oy3d_         128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL--NKPEPTCGRTPLHLAVEAQAA  205 (255)
T ss_dssp             ----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccc--cccccccccccccccccccHH
Confidence            111111111111222222222237889999999999999999999999999987762  334578999999999999999


Q ss_pred             hHHHHhhhCcccchhhccccCCCCChHHHhHhhh
Q 039300          281 DVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTR  314 (534)
Q Consensus       281 ~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~  314 (534)
                      +++++|+++ |+|++.+|.  .|+|||++|....
T Consensus       206 ~~v~~Ll~~-gadin~~d~--~g~t~L~~A~~~~  236 (255)
T d1oy3d_         206 SVLELLLKA-GADPTARMY--GGRTPLGSALLRP  236 (255)
T ss_dssp             HHHHHHHHT-TCCTTCCCT--TSCCHHHHHHTSS
T ss_pred             HHHHHHHHC-CCCCCCCCC--CCCCHHHHHHHCC
Confidence            999999998 799999999  9999999998743

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-35  Score=268.05  Aligned_cols=225  Identities=23%  Similarity=0.305  Sum_probs=189.0

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC--cCCcc
Q 039300            3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS--SYINK   80 (534)
Q Consensus         3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~--~~~~~   80 (534)
                      +||||+||+.|+.++|+.|++.+..            .++.+|.+|.||||+|+..|+.+++++|+++|+++.  ...+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~------------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~   68 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS------------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD   68 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG------------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCT
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC------------cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccc
Confidence            5899999999999999999986432            334689999999999999999999999999998764  34577


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300           81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD  160 (534)
Q Consensus        81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d  160 (534)
                      .|.+|+++++..+..++++.++..+...                                              .....+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~  102 (229)
T d1ixva_          69 SGWTPFHIACSVGNLEVVKSLYDRPLKP----------------------------------------------DLNKIT  102 (229)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHSSSSCC----------------------------------------------CTTCCC
T ss_pred             cccccccccccccccccccccccccccc----------------------------------------------cccccc
Confidence            7889999999999999988888776541                                              122344


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300          161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK  240 (534)
Q Consensus       161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  240 (534)
                      ..+.||++.++..++.++++.|++.|.... ..|..|.||||.|+..|+.++++.|++.++..++.+|..|+||||+|+.
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhhccccc-ccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcc
Confidence            457789999999999999999999988754 5788899999999999999999999999877788999999999999999


Q ss_pred             cCCHHHHHHHHhC-CcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc
Q 039300          241 HGNWNIVSFILKS-PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN  293 (534)
Q Consensus       241 ~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  293 (534)
                      +|+.+++++|++. |++   ++.+|.+|+||||+|+   +.+++++|+++ |+|
T Consensus       182 ~~~~~~v~~Ll~~~gad---~~~~d~~g~t~l~~A~---~~~~~~~Ll~~-g~d  228 (229)
T d1ixva_         182 EGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVAL---NEQVKKFFLNN-VVD  228 (229)
T ss_dssp             TTCHHHHHHHHHHHCCC---SCCCCTTSCCTGGGCS---CHHHHHHHHHH-CCC
T ss_pred             cccHHHHHHHHHhcCCC---CCCcCCCCCCHHHHHh---hHHHHHHHHHc-CCC
Confidence            9999999999964 666   8899999999999987   35788999987 665

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=265.98  Aligned_cols=227  Identities=21%  Similarity=0.270  Sum_probs=201.1

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ  128 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~  128 (534)
                      +||||+||.+|+.++|+.|++.++...+..|.+|.||||+|+..|+.+++++|++++++. +                  
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~-~------------------   61 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-N------------------   61 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTC-C------------------
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccc-c------------------
Confidence            589999999999999999999876666788999999999999999999999999988751 1                  


Q ss_pred             CcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhh-cccCCCCCcHHHHHHHc
Q 039300          129 NYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLA-YKRDCNGATPLHLAAEN  207 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~  207 (534)
                                                ..+..+..|.+|+|+++..+..++++.++..+.... ...+..+.||++.++..
T Consensus        62 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  115 (229)
T d1ixva_          62 --------------------------LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK  115 (229)
T ss_dssp             --------------------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             --------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                      123445678899999999999999999988886432 34677899999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      ++.++++.|++.+.. .+..|..|+||||+|+.+|+.+++++|++.+..  .+|.+|.+|+||||+|+..|+.+++++|+
T Consensus       116 ~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         116 KWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS--AVNWQDKQGWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             chhhhhhhhhhhccc-ccccCCCCCCccchhhhcccccccccccccccc--cccccccccCCchhhhcccccHHHHHHHH
Confidence            999999999999988 788999999999999999999999999998643  38999999999999999999999999999


Q ss_pred             hCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhh
Q 039300          288 RHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAK  335 (534)
Q Consensus       288 ~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~  335 (534)
                      +..|+|++.+|.  +|+|||++|..          ..+.++|++.|++
T Consensus       193 ~~~gad~~~~d~--~g~t~l~~A~~----------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         193 EKYGAEYDLVDN--KGAKAEDVALN----------EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHCCCSCCCCT--TSCCTGGGCSC----------HHHHHHHHHHCCC
T ss_pred             HhcCCCCCCcCC--CCCCHHHHHhh----------HHHHHHHHHcCCC
Confidence            877999999999  99999999986          3578999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.1e-35  Score=282.61  Aligned_cols=257  Identities=18%  Similarity=0.279  Sum_probs=207.5

Q ss_pred             CCHHHHHHhc-CCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHH--------HHcCCC
Q 039300            3 ETPLHIAARI-GDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRIL--------VEKDSA   73 (534)
Q Consensus         3 ~T~Lh~Aa~~-g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~L--------l~~g~~   73 (534)
                      +||||+|++. |+.++++.|.+.+.+..              .+.+|+||||+||.+|+.++|++|        +++|++
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~--------------~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad   66 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNII--------------DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD   66 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTC--------------CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcC--------------CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC
Confidence            6999977664 66667776767655433              235699999999999999998877        566888


Q ss_pred             CCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCCh
Q 039300           74 PSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNK  153 (534)
Q Consensus        74 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  153 (534)
                      ++ ..|.+|.||||+|+..|+.+++++|+++|++ ++..+. .|.||++.|+..++.++         ...+..... ..
T Consensus        67 vn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~-~g~t~l~~a~~~~~~~~---------~~~l~~~~~-~~  133 (277)
T d2fo1e1          67 VN-AMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNK-SERSALHQAAANRDFGM---------MVYMLNSTK-LK  133 (277)
T ss_dssp             TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCT-TCCCHHHHHHHTTCHHH---------HHHHTTSHH-HH
T ss_pred             cc-ccCCCCCeeeccccccccccccccccccccc-cccccc-cccccccchhhhcchhh---------hhhhhhccc-cc
Confidence            86 6799999999999999999999999999998 666666 89999999999998877         333332211 11


Q ss_pred             hhhhcccCCCCcHHHHHHhCCCHH---HHHHHHhhch-------hhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc
Q 039300          154 DLINRLDWHQRNPLHYAAASGNVQ---MVQRLLEASK-------QLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA  223 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~~g~~~---~v~~Ll~~~~-------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  223 (534)
                      ..++..+..+.++.+.+...+..+   .+..+.+...       ......+..|.||||.++..++.++++.++......
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~  213 (277)
T d2fo1e1         134 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  213 (277)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             ccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccc
Confidence            345667888999999998877543   3344443322       112235668999999999999999999888777666


Q ss_pred             cccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300          224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH  289 (534)
Q Consensus       224 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  289 (534)
                      .+.+|..|+||||+|+..|+.+++++|+++|++   +|.+|.+|+||||+|+++|+.+++++|++.
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad---in~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            889999999999999999999999999999987   899999999999999999999999999863

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=261.20  Aligned_cols=219  Identities=24%  Similarity=0.326  Sum_probs=194.0

Q ss_pred             CCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300           48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR  127 (534)
Q Consensus        48 g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~  127 (534)
                      .++.|+.+|.+|+.+.|+.+++.++...+..|.+|+||||+|+..|+.+++++|++.+...                   
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-------------------   63 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-------------------   63 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-------------------
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-------------------
Confidence            4688999999999999988888877777788999999999999999999999998877652                   


Q ss_pred             cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc
Q 039300          128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN  207 (534)
Q Consensus       128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  207 (534)
                                                   ...+..+.++++.++..++.+++++|+++|+++. ..|..|.||||+|+..
T Consensus        64 -----------------------------~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~  113 (223)
T d1uoha_          64 -----------------------------NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASK  113 (223)
T ss_dssp             -----------------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred             -----------------------------ccccccccccccccccccccchhHHHhccCceeE-eeCCCCCchhhHHHHc
Confidence                                         1122346788999999999999999999998765 7899999999999999


Q ss_pred             CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      |+.+++++|+++|.+ ++.+|..|.||||+|+..++.+++++|++.+.+   ++.+|.+|+||||+|+..|+.+++++|+
T Consensus       114 ~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~---i~~~d~~g~TpL~~Aa~~g~~~~v~~LL  189 (223)
T d1uoha_         114 NRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNTPLHLACDEERVEEAKLLV  189 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhhhhccccce---eeeccCCCCceeccccccCcHHHHHHHH
Confidence            999999999999988 899999999999999999999999999999876   9999999999999999999999999999


Q ss_pred             hCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHH
Q 039300          288 RHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALK  330 (534)
Q Consensus       288 ~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~  330 (534)
                      ++ |+|++.+|.  .|+|||++|..        ....+++.|+
T Consensus       190 ~~-Gad~~~~d~--~g~tpl~~A~~--------~~~~i~~~Ll  221 (223)
T d1uoha_         190 SQ-GASIYIENK--EEKTPLQVAKG--------GLGLILKRMV  221 (223)
T ss_dssp             HT-TCCSCCCCT--TSCCHHHHCCT--------THHHHHHHHH
T ss_pred             HC-CCCCCCCCC--CCCCHHHHHHC--------CCHHHHhccc
Confidence            98 899999999  99999999954        2344666665

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=266.90  Aligned_cols=265  Identities=20%  Similarity=0.227  Sum_probs=227.3

Q ss_pred             CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM  126 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~  126 (534)
                      +++|+||.|+++|+.|+|++|+++|++++...+..|.||||+|+..|+.+++++|++.+... ..... .+.+|.+.+..
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~-~~~~~~~~~~~   81 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKK-NGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-ccccc-ccchhhHHHhh
Confidence            35799999999999999999999999987666778999999999999999999999999873 44444 78899999999


Q ss_pred             hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhh---------cccCCCC
Q 039300          127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLA---------YKRDCNG  197 (534)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~g  197 (534)
                      .+..+.         ....++...    .....+..+.++++.|+..++...++.+++...+..         ...+..|
T Consensus        82 ~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (285)
T d1wdya_          82 AGSVKL---------LKLFLSKGA----DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  148 (285)
T ss_dssp             HTCHHH---------HHHHHHTTC----CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred             cCCccc---------cchhhhhcc----cccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccC
Confidence            998877         555565543    344567789999999999999999999987655322         1245579


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC----CHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300          198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG----NWNIVSFILKSPEMENLINLIDRNGNTSLHL  273 (534)
Q Consensus       198 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~----~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~  273 (534)
                      .||||.|+++|+.++++.|+++....++..+..|.++.+.+...+    ..+++++|++.|++   ++.+|..|.||||+
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g~t~L~~  225 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLIL  225 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCCCCccch
Confidence            999999999999999999998755458999999999988776544    45799999999887   89999999999999


Q ss_pred             HHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300          274 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL  338 (534)
Q Consensus       274 A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~  338 (534)
                      |+..|+.+++++|++..|++++.+|.  +|.|||++|..       ....+++++|+++||+.+.
T Consensus       226 a~~~~~~~~v~~lL~~~g~din~~d~--~G~TpL~~A~~-------~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHIEINDTDS--DGKTALLLAVE-------LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHHSSCSCC
T ss_pred             hhhcCcHHHHHHHHHcCCCCCcCCCC--CCCCHHHHHHH-------cCCHHHHHHHHHCCCCCCc
Confidence            99999999999999988999999999  99999999998       4568899999999999764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5e-34  Score=273.22  Aligned_cols=243  Identities=23%  Similarity=0.287  Sum_probs=169.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      |.|||+.||..|+.++|++||++|+++|             .+|.+|.||||+|+.+|+.++|++|+++|.+.. ..+..
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-------------~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~~~~~  105 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADIN-------------YANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNE  105 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCC-------------ccCCCCCcHHHHHHhcCCceeeeeecccccccc-ccccc
Confidence            4588999999999999999999998887             378899999999999999999999999987764 56778


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW  161 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~  161 (534)
                      +.+||+.|+..++.++++.|++++.. .+..+. .+.+++++|+..++.+.         +..++......   ......
T Consensus       106 ~~~~L~~a~~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~~a~~~~~~~~---------~~~ll~~~~~~---~~~~~~  171 (291)
T d1s70b_         106 GWIPLHAAASCGYLDIAEYLISQGAH-VGAVNS-EGDTPLDIAEEEAMEEL---------LQNEVNRQGVD---IEAARK  171 (291)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHCCSHHHHHH---------HHHHHHHHTCC---HHHHHH
T ss_pred             ccccccccccccccchhhcccccCcc-cccccc-cCccccccccccccchh---------ccccccccccc---cccccc
Confidence            88999999999999999999998876 444554 78888888887777666         55555443311   111110


Q ss_pred             CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300          162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH  241 (534)
Q Consensus       162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  241 (534)
                      .+..+.       .......+...... ....+..|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||+|+..
T Consensus       172 ~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~  242 (291)
T d1s70b_         172 EEERIM-------LRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHW  242 (291)
T ss_dssp             HHHHHH-------HHHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred             cccccc-------cccchhhhcccccc-cccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHc
Confidence            000111       11112222222222 224556677777777777777777777777766 667777777777777777


Q ss_pred             CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300          242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR  288 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  288 (534)
                      |+.+++++|+++|++   ++.+|.+|+||||+|++    +++++|.+
T Consensus       243 g~~~iv~lLl~~Gad---v~~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         243 GKEEACRILVENLCD---MEAVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             CCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHH----HHHHHHHH
Confidence            777777777777765   67777777777777753    45555543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.2e-32  Score=261.46  Aligned_cols=231  Identities=23%  Similarity=0.323  Sum_probs=191.0

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHH--------hcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCC
Q 039300            1 MDETPLHIAARIGDHAIVSEIM--------KYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDS   72 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll--------~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~   72 (534)
                      .|+||||+||..|+.++|+.|+        +.|+++|             .+|.+|+||||+|+.+|+.++|++|+++|+
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-------------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga   98 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-------------AMDCDENTPLMLAVLARRRRLVAYLMKAGA   98 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-------------ccCCCCCeeecccccccccccccccccccc
Confidence            4899999999999999998875        5567766             489999999999999999999999999999


Q ss_pred             CCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCC--CcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhC
Q 039300           73 APSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE--SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILG  150 (534)
Q Consensus        73 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~  150 (534)
                      +++ ..|.+|.|||++|+..++.++++++......  ..+..+. .+.++.+.+...+..+...      .+..+.+...
T Consensus        99 d~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  170 (277)
T d2fo1e1          99 DPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVA------SAKLLVEKGA  170 (277)
T ss_dssp             CSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-TSCCHHHHHHHSCSTTHHH------HHHHHHHHTC
T ss_pred             ccc-cccccccccccchhhhcchhhhhhhhhccccccccccccc-ccchhHHHHHhcccccccc------cccccccccc
Confidence            975 6789999999999999999999999876543  2333444 7788888888877655411      1222222211


Q ss_pred             ----CChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccc
Q 039300          151 ----TNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI  226 (534)
Q Consensus       151 ----~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  226 (534)
                          ......+..+..|.||||.++..++.++++.++.........+|..|.||||+|++.|+.+++++|+++|++ ++.
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~  249 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEA  249 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC
T ss_pred             cccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCC
Confidence                122345567788999999999999999999877665555567899999999999999999999999999999 899


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300          227 RDNSDRSILHVAAKHGNWNIVSFILKS  253 (534)
Q Consensus       227 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  253 (534)
                      +|.+|+||||+|+++|+.+++++|++.
T Consensus       250 ~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         250 VDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=3.5e-32  Score=260.22  Aligned_cols=268  Identities=14%  Similarity=0.122  Sum_probs=206.7

Q ss_pred             hcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHH
Q 039300           11 RIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAI   90 (534)
Q Consensus        11 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~   90 (534)
                      +..+.+.++.+.....+.+....    +..-...+.+|.|||+.||..|+.++|++|+++|++++ ..|.+|.||||+|+
T Consensus         7 ~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-~~d~~G~T~L~~A~   81 (291)
T d1s70b_           7 KQKRNEQLKRWIGSETDLEPPVV----KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQAC   81 (291)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCSCC----CCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHH
T ss_pred             hHhhHHHHHHHHhCcccccCchh----hccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcHHHHHH
Confidence            34445666666665544332110    00011123456799999999999999999999999975 77999999999999


Q ss_pred             HcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHH
Q 039300           91 DVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYA  170 (534)
Q Consensus        91 ~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A  170 (534)
                      ..|+.+++++|++++.+ ....+. .+.+||+.++..++.++         ++.+++..    ...+..|..+.+|+++|
T Consensus        82 ~~g~~eiv~~Ll~~~~~-~~~~~~-~~~~~L~~a~~~~~~~~---------~~~l~~~~----~~~~~~~~~~~~~~~~a  146 (291)
T d1s70b_          82 IDDNVDMVKFLVENGAN-INQPDN-EGWIPLHAAASCGYLDI---------AEYLISQG----AHVGAVNSEGDTPLDIA  146 (291)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHTT----CCTTCCCTTSCCHHHHC
T ss_pred             hcCCceeeeeecccccc-cccccc-cccccccccccccccch---------hhcccccC----cccccccccCccccccc
Confidence            99999999999999987 344444 78999999999999888         77777653    45677888999999999


Q ss_pred             HhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 039300          171 AASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI  250 (534)
Q Consensus       171 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~L  250 (534)
                      +..+..+.++.+++............+..+.       .......+... .......+..|.||||+|+..|+.+++++|
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  218 (291)
T d1s70b_         147 EEEAMEELLQNEVNRQGVDIEAARKEEERIM-------LRDARQWLNSG-HINDVRHAKSGGTALHVAAAKGYTEVLKLL  218 (291)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HHHHHHHHHHT-CCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccchhccccccccccccccccccccccc-------cccchhhhccc-ccccccccCCCCChhhHHHHcCChhhhccc
Confidence            9999999999988654422211111111111       11222333333 333567788999999999999999999999


Q ss_pred             HhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300          251 LKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM  312 (534)
Q Consensus       251 l~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~  312 (534)
                      ++.|++   +|.+|.+|+||||+|+..|+.+++++|+++ |+|++.+|.  .|+|||++|.+
T Consensus       219 l~~g~d---in~~~~~g~TpL~~A~~~g~~~iv~lLl~~-Gadv~~~d~--~G~TaL~~A~e  274 (291)
T d1s70b_         219 IQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNK--VGQTAFDVADE  274 (291)
T ss_dssp             HTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCTTTSCCS
T ss_pred             ccceec---ccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHHHH
Confidence            999887   899999999999999999999999999997 899999999  99999999976

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-31  Score=242.03  Aligned_cols=223  Identities=22%  Similarity=0.253  Sum_probs=195.0

Q ss_pred             CCCCcHhHHHHHhCcHHHHHHHHH----cCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHH
Q 039300           46 IEGNTPLHNVVTKKHKRVIRILVE----KDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL  121 (534)
Q Consensus        46 ~~g~TpLh~A~~~g~~e~v~~Ll~----~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  121 (534)
                      ++|+||||+||.+|+.++|+.|++    .|++++ ..|.+|.||||+|+..|+.+++++|++++++ .+.... .+.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~-~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDR-HGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhccccccccccccccccc-cccccc-cccccc
Confidence            369999999999999999999885    677774 7799999999999999999999999999987 444454 888999


Q ss_pred             HHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHH
Q 039300          122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL  201 (534)
Q Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  201 (534)
                      +.|...++.+.         ++.............+.......++|+.+.........+.|.....+.....+..+.+|+
T Consensus        78 ~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  148 (228)
T d1k1aa_          78 HLACEHRSPTC---------LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL  148 (228)
T ss_dssp             HHHHHTTCHHH---------HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH
T ss_pred             ccccccccccc---------hhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHH
Confidence            99999998887         666666655444556667777889999999999999999999888776666778899999


Q ss_pred             HHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChh
Q 039300          202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSD  281 (534)
Q Consensus       202 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  281 (534)
                      +.|+..+..++++.+++.+.+ .+.+|..|+||||+|+.+|+.+++++|+++|++   +|.+|.+|+||||+|+++|+.+
T Consensus       149 ~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad---~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         149 IHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHH
T ss_pred             HHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhCCCcc
Confidence            999999999999999999887 788999999999999999999999999999887   8999999999999999999888


Q ss_pred             HHH
Q 039300          282 VVF  284 (534)
Q Consensus       282 ~v~  284 (534)
                      ++|
T Consensus       225 ivk  227 (228)
T d1k1aa_         225 ILR  227 (228)
T ss_dssp             HHT
T ss_pred             ccC
Confidence            875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=244.57  Aligned_cols=199  Identities=18%  Similarity=0.227  Sum_probs=168.8

Q ss_pred             CCCCHHHHHHhcCCHHHHHH----HHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCc
Q 039300            1 MDETPLHIAARIGDHAIVSE----IMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSS   76 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~   76 (534)
                      +|+||||+|+..|+.++++.    +...|+++|             .+|.+|+||||+|+.+|+.+++++|+++|+++. 
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-------------~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-------------FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-------------CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-------------cCCCCCCcccccccccccccccccccccccccc-
Confidence            69999999999999755554    445566655             589999999999999999999999999999885 


Q ss_pred             CCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhh
Q 039300           77 YINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLI  156 (534)
Q Consensus        77 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  156 (534)
                      ..|..|.|||+.|+..++.++++.|++.+......                                          ...
T Consensus        67 ~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~------------------------------------------~~~  104 (221)
T d1iknd_          67 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH------------------------------------------SIL  104 (221)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS------------------------------------------CGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccc------------------------------------------ccc
Confidence            67999999999999999999999999987652100                                          223


Q ss_pred             hcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHH
Q 039300          157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILH  236 (534)
Q Consensus       157 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh  236 (534)
                      +.....|.||||.|+..++.+++++|++.|.......+.+|.||||.|++.|+.+++++|+++|++ ++.+|.+|+||||
T Consensus       105 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~  183 (221)
T d1iknd_         105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQ  183 (221)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGG
T ss_pred             cccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHH
Confidence            445556889999999999999999999999988767777899999999999999999999999998 8999999999999


Q ss_pred             HHHhcCCHHHHHHHHhCCcc
Q 039300          237 VAAKHGNWNIVSFILKSPEM  256 (534)
Q Consensus       237 ~A~~~~~~~~~~~Ll~~~~~  256 (534)
                      +|+.+++.+++++|++....
T Consensus       184 ~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         184 LTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             GCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999887543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.6e-31  Score=239.52  Aligned_cols=219  Identities=24%  Similarity=0.320  Sum_probs=188.3

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHh----cCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCc
Q 039300            1 MDETPLHIAARIGDHAIVSEIMK----YVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSS   76 (534)
Q Consensus         1 ~G~T~Lh~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~   76 (534)
                      +|+||||+||+.|+.++|+.|++    .|+++|             .+|..|+||||+|+.+|+.+++++|+++|++.. 
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-------------~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-   67 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-   67 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------------ccCCCCCccceehhccccccccccccccccccc-
Confidence            59999999999999999999986    566665             589999999999999999999999999998875 


Q ss_pred             CCccCCCcHHHHHHHcCcHHHHHHHHhcCCCC---cccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCCh
Q 039300           77 YINKAYQTPLSIAIDVRLNDIACFIIDKSSES---LNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNK  153 (534)
Q Consensus        77 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  153 (534)
                      ..+..|.++++.|...++.++++.+.......   .+.... ...++++.+........         ...+.....   
T Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~---------~~~l~~~~~---  134 (228)
T d1k1aa_          68 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQET---------VQLLLERGA---  134 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHTTC---
T ss_pred             ccccccccccccccccccccchhhhhhcccccccccccccc-ccccccccccccccchh---------hhhhhcccc---
Confidence            67888999999999999999999888765542   222333 66789999988877665         555555433   


Q ss_pred             hhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCc
Q 039300          154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS  233 (534)
Q Consensus       154 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  233 (534)
                      ......+..+.+||+.|+..+..++++.+++.|.... .+|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+|
T Consensus       135 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~T  212 (228)
T d1k1aa_         135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDT  212 (228)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhhhhccccc-cccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCC
Confidence            3445667789999999999999999999999998755 6789999999999999999999999999998 8999999999


Q ss_pred             HHHHHHhcCCHHHHH
Q 039300          234 ILHVAAKHGNWNIVS  248 (534)
Q Consensus       234 ~Lh~A~~~~~~~~~~  248 (534)
                      |||+|+++|+.++++
T Consensus       213 pL~~A~~~~~~divk  227 (228)
T d1k1aa_         213 PLMVARSRRVIDILR  227 (228)
T ss_dssp             TTTTCSSHHHHHHHT
T ss_pred             HHHHHHhCCCccccC
Confidence            999999999998875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=4.3e-29  Score=226.26  Aligned_cols=207  Identities=22%  Similarity=0.299  Sum_probs=137.4

Q ss_pred             HHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCc
Q 039300           15 HAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRL   94 (534)
Q Consensus        15 ~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~   94 (534)
                      .|+|++|+++|+++|.            ..|.+|+||||+||.+|+.|++++|++.|++++ ..+..+.++++.++..++
T Consensus         2 ~~~v~~Ll~~g~din~------------~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~   68 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA------------TMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADA   68 (209)
T ss_dssp             HHHHHHHHHHHHHHHH------------HHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCcCc------------CcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccccccc
Confidence            5899999999999874            258899999999999999999999999998875 678889999999999988


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCC
Q 039300           95 NDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASG  174 (534)
Q Consensus        95 ~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g  174 (534)
                      .................... .+.++.+                                              .+....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------------------------------~~~~~~  101 (209)
T d1ot8a_          69 MGVFQILLRNRATNLNARMH-DGTTPLI----------------------------------------------LAARLA  101 (209)
T ss_dssp             HHHHHHHHTCTTCCTTCCCT-TCCCHHH----------------------------------------------HHHHTT
T ss_pred             cccccccccccccccccccc-ccccccc----------------------------------------------cccccc
Confidence            88777776655542222222 3444444                                              444444


Q ss_pred             CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300          175 NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP  254 (534)
Q Consensus       175 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  254 (534)
                      .....+.|.+.+.+.. ..+..|.|||+.++..+..++++.+++.+.+ ++..|..|.||||+|+.+|+.+++++|+++|
T Consensus       102 ~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  179 (209)
T d1ot8a_         102 IEGMVEDLITADADIN-AADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNF  179 (209)
T ss_dssp             CTTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             chhhhhhhhhhccccc-ccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCC
Confidence            4444445555544433 3455555566666655666666555555555 5555566666666666666666666666655


Q ss_pred             cccccccccCCCCCcHHHHHHhcCChhHHHHh
Q 039300          255 EMENLINLIDRNGNTSLHLAAMGLHSDVVFTL  286 (534)
Q Consensus       255 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  286 (534)
                      ++   ++.+|.+|+||||+|+++|+.++|++|
T Consensus       180 ad---~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         180 AN---REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CC---CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            54   555566666666666666666666554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.7e-29  Score=226.71  Aligned_cols=199  Identities=26%  Similarity=0.255  Sum_probs=168.8

Q ss_pred             HHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHH
Q 039300           61 KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQ  140 (534)
Q Consensus        61 ~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~  140 (534)
                      .|+|++|+++|++++...|.+|.||||+||..|+.+++++|++.+++ ++.                             
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~-----------------------------   51 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANS-----------------------------   51 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTC-----------------------------
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-ccc-----------------------------
Confidence            58999999999998655689999999999999999999999998876 232                             


Q ss_pred             HHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhC
Q 039300          141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKY  220 (534)
Q Consensus       141 ~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  220 (534)
                                        .+..+.++++.++..++.....................|.++.+.+.........+.|...+
T Consensus        52 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  113 (209)
T d1ot8a_          52 ------------------QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD  113 (209)
T ss_dssp             ------------------CCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTT
T ss_pred             ------------------ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence                              33345556666666666655555555544444445667889999999999999999999998


Q ss_pred             CCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcccc
Q 039300          221 PDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS  300 (534)
Q Consensus       221 ~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~  300 (534)
                      .+ ++.++..|+|||+.++.++..++++.+++.+.+   ++.+|.+|+||||+|+..|+.++++.|+++ |+|++.+|. 
T Consensus       114 ~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gad~n~~d~-  187 (209)
T d1ot8a_         114 AD-INAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDH-  187 (209)
T ss_dssp             CC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT-
T ss_pred             cc-ccccCCCCCCcchhhcccCcceeeeeecccccc---ccccccccccccchhccccHHHHHHHHHHC-CCCCCCcCC-
Confidence            88 888999999999999999999999999999876   899999999999999999999999999998 799999999 


Q ss_pred             CCCCChHHHhHhhh
Q 039300          301 ARNNTTLEIDEMTR  314 (534)
Q Consensus       301 ~~g~t~l~~a~~~~  314 (534)
                       .|.|||++|....
T Consensus       188 -~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         188 -MDRLPRDVASERL  200 (209)
T ss_dssp             -TSCCHHHHHHHTT
T ss_pred             -CCCCHHHHHHHcC
Confidence             9999999999853

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=230.55  Aligned_cols=191  Identities=24%  Similarity=0.309  Sum_probs=153.5

Q ss_pred             CCCcHhHHHHHhCcHHHHH----HHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300           47 EGNTPLHNVVTKKHKRVIR----ILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH  122 (534)
Q Consensus        47 ~g~TpLh~A~~~g~~e~v~----~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~  122 (534)
                      +|+||||+|+.+|+.++++    .+...|++++ ..|.+|+||||+|+..|+.+++++|+++|++ +             
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-~-------------   65 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCD-P-------------   65 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-S-------------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCcccccccccccccccccccccccc-c-------------
Confidence            5899999999999965544    5555676664 6788999999999999999999999888775 2             


Q ss_pred             HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchh-----hhcccCCCC
Q 039300          123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQ-----LAYKRDCNG  197 (534)
Q Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g  197 (534)
                                                        +..|..|.||||.++..++.++++.|++.+..     ........|
T Consensus        66 ----------------------------------~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          66 ----------------------------------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             ----------------------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             ----------------------------------cccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence                                              23344566666666666666666666665432     222345578


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhc
Q 039300          198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMG  277 (534)
Q Consensus       198 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~  277 (534)
                      .||||.|+..++.++++.|+..++......+.+|+||||+|++.|+.+++++|+++|++   ++.+|.+|+||||+|+..
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad---~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGGCTTS
T ss_pred             chhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc---ccccCCCCCCHHHHHHHC
Confidence            99999999999999999999999985455567899999999999999999999999887   999999999999999999


Q ss_pred             CChhHHHHhhhC
Q 039300          278 LHSDVVFTLSRH  289 (534)
Q Consensus       278 ~~~~~v~~Ll~~  289 (534)
                      ++.+++++|++.
T Consensus       189 ~~~~~~~~l~~~  200 (221)
T d1iknd_         189 PSTRIQQQLGQL  200 (221)
T ss_dssp             SCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHc
Confidence            999999999887

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=9e-31  Score=255.91  Aligned_cols=269  Identities=12%  Similarity=0.057  Sum_probs=196.7

Q ss_pred             HHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHH---HHHcCCCCCcCCccCCCcH
Q 039300            9 AARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRI---LVEKDSAPSSYINKAYQTP   85 (534)
Q Consensus         9 Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~---Ll~~g~~~~~~~~~~g~tp   85 (534)
                      +...+..++.+.+...+++.+....  .....+..+|..|.||||+|+++|+.+++++   |++.|++++ ..|.+|.||
T Consensus        53 ~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~~~g~ta  129 (346)
T d2ajaa1          53 PGTKNMEQVRQLLCLYYAHYNRNAK--QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQA  129 (346)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHH
T ss_pred             HhhccHHHHHHHHHHcchhhccchh--hhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccCCCCCCH
Confidence            3344556777888777766654221  2345667789999999999999999887776   788898875 678899999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCCcccCC-CCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCC
Q 039300           86 LSIAIDVRLNDIACFIIDKSSESLNATR-LPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR  164 (534)
Q Consensus        86 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~  164 (534)
                      ||+|+..|+.++|++|++.|++. +..+ ..+|.||||+|+.+|+.++         ++.|++.... ....+..+.++.
T Consensus       130 L~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~Aa~~g~~~i---------v~~Ll~~~~~-~~~~~~~~~~~~  198 (346)
T d2ajaa1         130 FRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLAAENGHLHV---------LNRLCELAPT-EATAMIQAENYY  198 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHHHHTTCHHH---------HHHHHHSCGG-GHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHHHHHhhHHH---------HHHHHHcCCc-ccccccccCCCc
Confidence            99999999999999999999873 3322 1268999999999999999         8888886431 123455556678


Q ss_pred             cHHHHHHhCCCHHHHHHHHhhchhhhcc------cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc-ccccc-------CC
Q 039300          165 NPLHYAAASGNVQMVQRLLEASKQLAYK------RDCNGATPLHLAAENGELKVLKLLINKYPDA-IEIRD-------NS  230 (534)
Q Consensus       165 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-~~~~d-------~~  230 (534)
                      ||++.|+..|+.+++++|++.|++....      ....+.++++.+...+..+....+.....+. .+..+       ..
T Consensus       199 t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~  278 (346)
T d2ajaa1         199 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFY  278 (346)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHH
T ss_pred             chhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccch
Confidence            8899999999999999999999865422      1233446666666666655555444333221 11111       12


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCccccc--ccccCCCCCcHHHHHHhcCChhHHHHhhhCcc
Q 039300          231 DRSILHVAAKHGNWNIVSFILKSPEMENL--INLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS  291 (534)
Q Consensus       231 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  291 (534)
                      +.++++.|+..++.+++++|++.+.....  .+..+.+|+||||+|++.|+.+++++|++.++
T Consensus       279 ~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             hhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence            35788999999999999999998764332  33456789999999999999999999998753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=199.08  Aligned_cols=154  Identities=21%  Similarity=0.248  Sum_probs=109.5

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      +|||+||..|+.++|+.|+++|++++             .+|.+|.||||+|+ .|+.|++++|+++|+++. ..+..|.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-------------~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~   67 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN-------------AQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGF   67 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT-------------CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC-------------ccCCcccccccccc-cccccccccccccccccc-cccccCc
Confidence            78888888888888888888888777             37888888888775 678888888888887764 5677788


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCC
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ  163 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g  163 (534)
                      +|++.++..++.++++.|++.+.+                                                .+..+..|
T Consensus        68 ~~l~~~~~~~~~~~~~~l~~~~~~------------------------------------------------~~~~~~~~   99 (156)
T d1ihba_          68 AVIHDAARAGFLDTLQTLLEFQAD------------------------------------------------VNIEDNEG   99 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCCTTS
T ss_pred             cccccccccccccccccccccccc------------------------------------------------cccccccc
Confidence            888888888888888888776554                                                22334445


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhC
Q 039300          164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKY  220 (534)
Q Consensus       164 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  220 (534)
                      .+|+|+|+..++.+++++|+++++.....+|..|.||||+|++.|+.+++++|+++|
T Consensus       100 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         100 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666666666666666666666665444455666666666666666666666666554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=3.3e-28  Score=237.56  Aligned_cols=226  Identities=12%  Similarity=0.080  Sum_probs=161.4

Q ss_pred             CCCHHHHHHhcCCHHHHHH---HHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcC-
Q 039300            2 DETPLHIAARIGDHAIVSE---IMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSY-   77 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~---Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~-   77 (534)
                      |.||||+||++|+.+++++   |++.|+++|             .+|.+|.||||+||++||.++|++|++.|+++... 
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-------------~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~  156 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCLLLTSDEIVK-------------VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM  156 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---------------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH
T ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-------------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence            6799999999999877765   788998887             48889999999999999999999999999987532 


Q ss_pred             CccCCCcHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhh
Q 039300           78 INKAYQTPLSIAIDVRLNDIACFIIDKSSESL--NATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDL  155 (534)
Q Consensus        78 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  155 (534)
                      .+.+|.||||+|+..|+.+++++|++.++...  +..+. ++.+|++.|+.+|+.++         ++.|++    .+..
T Consensus       157 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~i---------v~~Ll~----~ga~  222 (346)
T d2ajaa1         157 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE-NYYAFRWAAVGRGHHNV---------INFLLD----CPVM  222 (346)
T ss_dssp             HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH-HHHHHHHHHSTTCCHHH---------HHHHTT----SHHH
T ss_pred             cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccC-CCcchhhHHhhcCHHHH---------HHHHHh----CCCC
Confidence            23468999999999999999999999987632  22222 56788888999999998         666654    3344


Q ss_pred             hhcccC-------CCCcHHHHHHhCCCHHHHHHHHhhchhhh-cc-------cCCCCCcHHHHHHHcCcHHHHHHHHHhC
Q 039300          156 INRLDW-------HQRNPLHYAAASGNVQMVQRLLEASKQLA-YK-------RDCNGATPLHLAAENGELKVLKLLINKY  220 (534)
Q Consensus       156 ~~~~d~-------~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~-~~-------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  220 (534)
                      ++..+.       .+.++++.+...+..+....+.....+.. ..       ....+.++++.|+..|+.+++++|++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~  302 (346)
T d2ajaa1         223 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP  302 (346)
T ss_dssp             HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred             cchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCc
Confidence            443222       22244444443333333332222221100 00       0112347889999999999999999877


Q ss_pred             CCc----cccccCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300          221 PDA----IEIRDNSDRSILHVAAKHGNWNIVSFILKSP  254 (534)
Q Consensus       221 ~~~----~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  254 (534)
                      ...    ....+.+|+||||+|++.|+.+++++|++.+
T Consensus       303 ~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         303 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             ChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            642    2334567999999999999999999999863

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-25  Score=193.36  Aligned_cols=154  Identities=21%  Similarity=0.288  Sum_probs=123.5

Q ss_pred             cHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC
Q 039300           50 TPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQN  129 (534)
Q Consensus        50 TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~  129 (534)
                      +|||+||..|+.++|++|+++|++++ ..|.+|.||||+|+ .|+.+++++|++++++                      
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~----------------------   58 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGAN----------------------   58 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCcccccccccc-cccccccccccccccc----------------------
Confidence            78889998899999999888888874 67888888888775 6788888888887654                      


Q ss_pred             cchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc
Q 039300          130 YDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE  209 (534)
Q Consensus       130 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  209 (534)
                                                ++..+..|.+|++.++..+..+.++.|++.+.+.. ..|..|.+|+|.|+..++
T Consensus        59 --------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~  111 (156)
T d1ihba_          59 --------------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGH  111 (156)
T ss_dssp             --------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             --------------------------cccccccCccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence                                      23344556778888888888888888888877654 567788888888888888


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300          210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP  254 (534)
Q Consensus       210 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~  254 (534)
                      .++++.|+++++...+.+|.+|+||||+|+++++.+++++|+++|
T Consensus       112 ~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         112 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            888888888887667888888888888888888888888888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-24  Score=186.60  Aligned_cols=149  Identities=21%  Similarity=0.299  Sum_probs=74.3

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      ||||.||+.|+.++|++||++|++++              .|..|.||||+|+..++.++++.++....... ..+..+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--------------~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~   68 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--------------cccCCCcccccccccccccccccccccccccc-ccccccc
Confidence            45555555555555555555554433              34445555555555555555555554443332 2333444


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCC
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ  163 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g  163 (534)
                      ++++.++...+.++++++++++.+                                                .+.+|.+|
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~~~------------------------------------------------~~~~~~~g  100 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHGAD------------------------------------------------VNAKDMLK  100 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCC------------------------------------------------TTCCCTTS
T ss_pred             cccccccccccceeeecccccCCc------------------------------------------------cccccccC
Confidence            444444444444444444443332                                                22234445


Q ss_pred             CcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHH
Q 039300          164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL  216 (534)
Q Consensus       164 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  216 (534)
                      .||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+.+|+.+++++|
T Consensus       101 ~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         101 MTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             chHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            555555555555555555555555443 4455555555555555555555543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=185.14  Aligned_cols=152  Identities=24%  Similarity=0.292  Sum_probs=138.5

Q ss_pred             hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300          119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGA  198 (534)
Q Consensus       119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  198 (534)
                      +.|+.|+..|+.++         ++.+++...   .+++..|..|+||||+|+ .|+.+++++|++.+.++. ..+..|.
T Consensus         4 ~~L~~Aa~~g~~~~---------vk~lL~~~~---~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~~~   69 (156)
T d1bd8a_           4 DRLSGAAARGDVQE---------VRRLLHREL---VHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGT   69 (156)
T ss_dssp             HHHHHHHHHTCHHH---------HHHHHHTTC---CCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             HHHHHHHHcCCHHH---------HHHHHHhCC---CCCCccCCCCCccccccc-cccccccccccccccccc-ccccccc
Confidence            46999999999998         888887644   678999999999999886 488999999999999865 6778999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL  278 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~  278 (534)
                      +|++.++..++.++++.+++++++ ++.+|..|+||||+|+..|+.+++++|++ +++   ++.+|.+|+||||+|+..|
T Consensus        70 ~~l~~~~~~~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-~~~---~~~~d~~G~TpL~~A~~~g  144 (156)
T d1bd8a_          70 SPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESD---LHRRDARGLTPLELALQRG  144 (156)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-TSC---TTCCCTTSCCHHHHHHHSC
T ss_pred             cccccccccccccccccccccccc-cccccCCCCeeeccccccccccccccccc-ccc---ccccCCCCCCHHHHHHHcC
Confidence            999999999999999999999998 88999999999999999999999998884 554   8999999999999999999


Q ss_pred             ChhHHHHhhhC
Q 039300          279 HSDVVFTLSRH  289 (534)
Q Consensus       279 ~~~~v~~Ll~~  289 (534)
                      +.+++++|++|
T Consensus       145 ~~~iv~~Ll~h  155 (156)
T d1bd8a_         145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHhh
Confidence            99999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6e-24  Score=181.85  Aligned_cols=150  Identities=20%  Similarity=0.309  Sum_probs=111.5

Q ss_pred             CcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc
Q 039300           49 NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ  128 (534)
Q Consensus        49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~  128 (534)
                      .||||.||+.|+.++|++|+++|++..  .|..|.||||+|+..++.++++.++......                    
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~--------------------   60 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR--------------------   60 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT--------------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccc--------------------
Confidence            388888888888888888888887653  5777888888888888888887777665441                    


Q ss_pred             CcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcC
Q 039300          129 NYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG  208 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  208 (534)
                                                  ...+..+.++++.++...+.+.++.+++.+.+.. .+|..|.||||+|+..|
T Consensus        61 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g  111 (153)
T d1awcb_          61 ----------------------------DARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHN  111 (153)
T ss_dssp             ----------------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             ----------------------------cccccccccccccccccccceeeecccccCCccc-cccccCchHHHhhhhcc
Confidence                                        1122234567777777777777888877777654 56777888888888888


Q ss_pred             cHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 039300          209 ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI  250 (534)
Q Consensus       209 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~L  250 (534)
                      +.+++++|++.|++ ++.+|.+|+||||+|+.+|+.+++++|
T Consensus       112 ~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         112 HQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            88888888877777 677777788888888888877777765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.2e-25  Score=210.80  Aligned_cols=207  Identities=14%  Similarity=0.063  Sum_probs=131.7

Q ss_pred             HHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCc---chhhhhhh
Q 039300           62 RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNY---DLSKSMQF  138 (534)
Q Consensus        62 e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~---~~~~~~~~  138 (534)
                      ++...+...+.+++...|.+|.||||+||..|+.+++++|+++|++ ++..+. .|+||||.|+..++.   +.      
T Consensus        87 ~~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~-~G~TpL~~A~~~~~~~~~~~------  158 (301)
T d1sw6a_          87 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDN-MGESCLVKAVKSVNNYDSGT------  158 (301)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCT-TCCCHHHHHHHSSHHHHTTC------
T ss_pred             HHHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCc-ccccHHHHhhhcccchhhhh------
Confidence            3333333345555434478899999999999999999999999887 566666 788999998876642   22      


Q ss_pred             HHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCC----HHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHH
Q 039300          139 LQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGN----VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLK  214 (534)
Q Consensus       139 ~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  214 (534)
                         ++.+++.+.   ...+..|..|+||||.++..+.    ...+++.                          ...++.
T Consensus       159 ---~~~ll~~l~---~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~--------------------------~~~~~~  206 (301)
T d1sw6a_         159 ---FEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYY--------------------------LDILMG  206 (301)
T ss_dssp             ---HHHHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH--------------------------HHHHHH
T ss_pred             ---HHHHHHHHh---hhhhhcccccCCHHHHHHHHhCccccHHHHHHH--------------------------HHHHHH
Confidence               445566554   4567778888999998774332    2222221                          123455


Q ss_pred             HHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccch
Q 039300          215 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNI  294 (534)
Q Consensus       215 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~  294 (534)
                      .+.+.+..........+.++++.+........++.+.........+|.+|.+|+||||+|++.|+.+++++|+++ |+|+
T Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~  285 (301)
T d1sw6a_         207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADP  285 (301)
T ss_dssp             HHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCT
T ss_pred             HHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCC
Confidence            666666554555666667777766665555544433211111223788999999999999999999999999987 8999


Q ss_pred             hhccccCCCCChHHHhH
Q 039300          295 RAKNRSARNNTTLEIDE  311 (534)
Q Consensus       295 ~~~n~~~~g~t~l~~a~  311 (534)
                      +.+|+  .|.|||++|.
T Consensus       286 ~~~n~--~G~Tpl~~A~  300 (301)
T d1sw6a_         286 FIANK--SGLRPVDFGA  300 (301)
T ss_dssp             TCCCT--TSCCGGGGTC
T ss_pred             CCCCC--CCCCHHHHcC
Confidence            99999  9999999885

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.9e-24  Score=182.55  Aligned_cols=152  Identities=22%  Similarity=0.333  Sum_probs=120.9

Q ss_pred             cHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC
Q 039300           50 TPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQN  129 (534)
Q Consensus        50 TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~  129 (534)
                      +.||.||..|+.++|+.|++.+....+..|..|.||||+|+. |+.+++++|++++.+                      
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~----------------------   60 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS----------------------   60 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCC----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccc----------------------
Confidence            459999999999999999987443345778899999998874 788899999887665                      


Q ss_pred             cchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc
Q 039300          130 YDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE  209 (534)
Q Consensus       130 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  209 (534)
                                                ++..+..|.+|++.++..++.++++.+++.|++++ .+|..|.||||+|++.|+
T Consensus        61 --------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~  113 (156)
T d1bd8a_          61 --------------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGH  113 (156)
T ss_dssp             --------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTC
T ss_pred             --------------------------ccccccccccccccccccccccccccccccccccc-cccCCCCeeecccccccc
Confidence                                      22334457788888888888888888888887754 567788888888888888


Q ss_pred             HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300          210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS  253 (534)
Q Consensus       210 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~  253 (534)
                      .+++++|+ .+++ ++.+|.+|+||||+|+.+|+.+++++|+++
T Consensus       114 ~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         114 TAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            88888776 5666 788888888888888888888888888865

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.9e-24  Score=204.63  Aligned_cols=185  Identities=17%  Similarity=0.200  Sum_probs=120.4

Q ss_pred             CCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCc-------HHHHHHHHhcCCCCcccCCCCCC
Q 039300           45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRL-------NDIACFIIDKSSESLNATRLPDE  117 (534)
Q Consensus        45 d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~-------~~iv~~Ll~~~~~~~~~~~~~~g  117 (534)
                      |.+|+||||+||..|+.++|++|+++|+++. ..|..|+||||.||..++       .++++++.+.    ....+. .|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----~~~~d~-~g  177 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----LILEDS-MN  177 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----GGEECT-TC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----hhhccc-cc
Confidence            8999999999999999999999999999986 679999999999998775       2455555432    344455 88


Q ss_pred             chHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCC
Q 039300          118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNG  197 (534)
Q Consensus       118 ~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  197 (534)
                      +||||.++..+..+.         .....+.                         ....++..+++.+..........+
T Consensus       178 ~t~lh~~~~~~~~~~---------~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~~~~  223 (301)
T d1sw6a_         178 RTILHHIIITSGMTG---------CSAAAKY-------------------------YLDILMGWIVKKQNRPIQSGTNEK  223 (301)
T ss_dssp             CCHHHHHHHHHTSTT---------CHHHHHH-------------------------HHHHHHHHHHHGGGCCEEEC----
T ss_pred             CCHHHHHHHHhCccc---------cHHHHHH-------------------------HHHHHHHHHHhcCCcchhcccccc
Confidence            999999987766443         1111111                         011234555555554443444445


Q ss_pred             CcHHHHHHHcCcHHHHH-----HHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHH
Q 039300          198 ATPLHLAAENGELKVLK-----LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH  272 (534)
Q Consensus       198 ~tpL~~A~~~g~~~~v~-----~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh  272 (534)
                      .++++.+........+.     .++...   ++.+|.+|+||||+|+++|+.+++++|++.|++   ++.+|++|.||||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd---~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         224 ESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVD  297 (301)
T ss_dssp             ------------CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGG
T ss_pred             cchhHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHH
Confidence            55555444333322222     222221   567788888888888888888888888888877   7888888888888


Q ss_pred             HHH
Q 039300          273 LAA  275 (534)
Q Consensus       273 ~A~  275 (534)
                      +|+
T Consensus       298 ~A~  300 (301)
T d1sw6a_         298 FGA  300 (301)
T ss_dssp             GTC
T ss_pred             HcC
Confidence            885

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.3e-23  Score=169.18  Aligned_cols=106  Identities=27%  Similarity=0.276  Sum_probs=63.0

Q ss_pred             cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC
Q 039300          199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL  278 (534)
Q Consensus       199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~  278 (534)
                      |||++|+++|+.++++.|+++|++ ++.+|..|+||||+|+.+|+.+++++|++.+.+   +|.+|.+|+||||+|+.+|
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d---in~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT---TTCCSSSCSCHHHHHHTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccce---eeecccccccchhhhhhcC
Confidence            456666666666666666655555 555555666666666666666666666655554   5555666666666666666


Q ss_pred             ChhHHHHhhhCcccchhhccccCCCCChHHHhH
Q 039300          279 HSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDE  311 (534)
Q Consensus       279 ~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~  311 (534)
                      +.+++++|+++ |+|++.+|.  +|.|||++|.
T Consensus        80 ~~~~v~~Ll~~-Gad~~~~d~--~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSK-GADKTVKGP--DGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHTT-CCCSSSSSS--STCCCCCTCS
T ss_pred             chhhhhhhhcc-cccceeeCC--CCCCHHHHHh
Confidence            66666666655 456666655  5666665553

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.9e-23  Score=168.29  Aligned_cols=120  Identities=25%  Similarity=0.287  Sum_probs=111.1

Q ss_pred             CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC-cHHHHHHhc
Q 039300          163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDR-SILHVAAKH  241 (534)
Q Consensus       163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~  241 (534)
                      +.++||.|+..|+.+++++|+++|++++ .+|..|.||+|.|+ .|+.+++++|++++++ ++.+|..|. ||||+|+++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-cccccccccccccccc-ccccccccccccccccccc
Confidence            5689999999999999999999999865 78899999999775 7999999999999998 788888776 699999999


Q ss_pred             CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300          242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR  288 (534)
Q Consensus       242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  288 (534)
                      |+.+++++|++.|++   ++.+|.+|+||||+|+++|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc---cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999877   89999999999999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-22  Score=166.62  Aligned_cols=114  Identities=16%  Similarity=0.138  Sum_probs=102.9

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300            2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      +.++||+||+.|+.++|++|+++|+++|             .+|..|.||||.|+ .|+.+++++|+++|++++. .+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-------------~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~-~~~~   67 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-------------APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPA   67 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-------------CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-------------cccccccccccccc-ccccccccccccccccccc-cccc
Confidence            4689999999999999999999999988             48999999999775 7999999999999999864 4555


Q ss_pred             C-CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300           82 Y-QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL  132 (534)
Q Consensus        82 g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (534)
                      + .||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+.+|+.++
T Consensus        68 ~~~~~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~-~G~T~l~~A~~~g~~~~  117 (125)
T d1bi7b_          68 TLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDA-WGRLPVDLAEELGHRDV  117 (125)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCT-TCCCHHHHHHHHTCHHH
T ss_pred             ccccccccccccccccccccccccccc-cccccC-CCCCHHHHHHHcCCHHH
Confidence            4 5799999999999999999999987 677776 99999999999999998

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=6.6e-23  Score=166.49  Aligned_cols=115  Identities=23%  Similarity=0.343  Sum_probs=105.9

Q ss_pred             CcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 039300          164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN  243 (534)
Q Consensus       164 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  243 (534)
                      .|||++|++.|+.+++++|+++|+++. .+|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc-cccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCc
Confidence            489999999999999999999999865 7899999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300          244 WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS  287 (534)
Q Consensus       244 ~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  287 (534)
                      .+++++|+++|++   ++.+|.+|+||||+|.    .+.++.|+
T Consensus        81 ~~~v~~Ll~~Gad---~~~~d~~G~t~l~~a~----~~~i~~LL  117 (118)
T d1myoa_          81 VSCVKLLLSKGAD---KTVKGPDGLTALEATD----NQAIKALL  117 (118)
T ss_dssp             CHHHHHHHTTCCC---SSSSSSSTCCCCCTCS----STTTGGGG
T ss_pred             hhhhhhhhccccc---ceeeCCCCCCHHHHHh----HHHHHHhc
Confidence            9999999999987   8999999999999983    24455555

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=161.10  Aligned_cols=121  Identities=19%  Similarity=0.214  Sum_probs=106.1

Q ss_pred             CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCC
Q 039300            4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ   83 (534)
Q Consensus         4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~   83 (534)
                      ++||.||..|+.++|+.|+++|+++|             .+|.+|+||||+|+..|+.+++++|++.|++.+ ..|.+|.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n-------------~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~   68 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS-------------LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGW   68 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc-------------ccccccccccccccccccccccccccccccccc-cccccCc
Confidence            57999999999999999999999988             489999999999999999999999999998875 7899999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHH--HHhcCcchhhhhhhHHHHHHHHHH
Q 039300           84 TPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF--VMRQNYDLSKSMQFLQFIDIMVKI  148 (534)
Q Consensus        84 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~~~~~~~~~~ll~~  148 (534)
                      ||||+|+..|+.+++++|+++|++ ++..+..++.|+++.+  ...|+.++         ++.|+..
T Consensus        69 tpLh~A~~~g~~~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~ei---------v~~L~~~  125 (130)
T d1ycsb1          69 TPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQC---------SQFLYGV  125 (130)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCH---------HHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHH---------HHHHHhH
Confidence            999999999999999999999998 4444443678887665  56788888         7777654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.5e-21  Score=159.91  Aligned_cols=120  Identities=19%  Similarity=0.215  Sum_probs=108.2

Q ss_pred             cHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH
Q 039300          165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW  244 (534)
Q Consensus       165 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  244 (534)
                      ++|+.|+..|+.++++.|+++|++++ .+|.+|.||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+.+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc-ccccccccccccccccccccccccccccccc-cccccccCcccccccchhhHH
Confidence            67899999999999999999999865 7899999999999999999999999999988 899999999999999999999


Q ss_pred             HHHHHHHhCCcccccccccC-CCCCcHHHHH--HhcCChhHHHHhhhC
Q 039300          245 NIVSFILKSPEMENLINLID-RNGNTSLHLA--AMGLHSDVVFTLSRH  289 (534)
Q Consensus       245 ~~~~~Ll~~~~~~~~~~~~d-~~g~t~Lh~A--~~~~~~~~v~~Ll~~  289 (534)
                      +++++|+++|++   ++..+ .+|+||++++  +..|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~---v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCC---cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999887   77666 4588887765  577889999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=7.3e-20  Score=155.06  Aligned_cols=121  Identities=18%  Similarity=0.257  Sum_probs=108.6

Q ss_pred             HHHHHHhCCCHHHHHHHHhhchhhhcc-----cCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300          166 PLHYAAASGNVQMVQRLLEASKQLAYK-----RDCNGATPLHLAAEN---GELKVLKLLINKYPDAIEIRDNSDRSILHV  237 (534)
Q Consensus       166 pL~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  237 (534)
                      .|..|++.++...+..++..|.+....     .+..|.||||+|++.   ++.+++++|+++|++ ++.+|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hhhhhhhhcccccc
Confidence            456788999999999999988765422     366899999999974   788999999999998 89999999999999


Q ss_pred             HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCc
Q 039300          238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK  290 (534)
Q Consensus       238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  290 (534)
                      |+..|+.+++++|+++|++   ++.+|.+|+||||+|++.|+.+++++|++..
T Consensus        88 A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccccCcc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999999999887   8999999999999999999999999999863

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=6.6e-19  Score=149.10  Aligned_cols=127  Identities=11%  Similarity=0.045  Sum_probs=110.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHh---CcHHHHHHHHHcCCCCCcCCccC
Q 039300            5 PLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTK---KHKRVIRILVEKDSAPSSYINKA   81 (534)
Q Consensus         5 ~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~---g~~e~v~~Ll~~g~~~~~~~~~~   81 (534)
                      .|+.|++.+++..+..++..|.+++..       ......+..|+||||+|++.   |+.++|++|+++|++++ ..|..
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~-------~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~   80 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEK-------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGK   80 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSB-------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCC-------CCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhh
Confidence            356888999999999999999887642       22334578899999999985   67899999999999885 78999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhC
Q 039300           82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILG  150 (534)
Q Consensus        82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~  150 (534)
                      |.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.++         ++.|++...
T Consensus        81 g~TpLh~A~~~~~~~~v~~Ll~~gad-~~~~d~-~g~tpL~~A~~~~~~~i---------~~~L~~~~~  138 (154)
T d1dcqa1          81 GSTALHYCCLTDNAECLKLLLRGKAS-IEIANE-SGETPLDIAKRLKHEHC---------EELLTQALS  138 (154)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHTTCHHH---------HHHHHHHHT
T ss_pred             hccccccccccccccccccccccCcc-ccccCC-CCCCHHHHHHHcCCHHH---------HHHHHHhCC
Confidence            99999999999999999999999998 577776 99999999999999999         888888654