Citrus Sinensis ID: 039327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL
Secondary Structure (PSIPRED)
ccccccEEEccccEEEEEcccccccccccccEEEccccEEEEEcccccccccccccccEEEccccccccccccHHHHccccccEEEcccccccccccHHHHHcccccccEEccccEEEEEccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccccccccccccHHHcccccccEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccHHHHcccccccEEEEccccccccccHHHccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccEEcccccccccccHHHcccccccEEEcccccccccccHHHccccEEEEcc
Coil and Loop (DISEMBL)
HLTSIEELylsnnhfqipisleplfnhsrlKRLWAYNNEIKAEIteshsltapnfQLQSLLLssgygdgvtfpkflyhqhdledvhLSHIkmngkfpnwllennaKLETLFLIndsiggpfrlpihphrrlrfldvsnnnfqghipveigdilpslfsfnistnalhgsipssfgnmNFLRILDlssnqltgeiperlavgcVNLEFLALSNnnlkghmfcrnfNLANlrqlqlednrfigeipqslskcssleglylnnnslsditmpknhlegpipvefCQLYSLHildisdnnisgslpscfhplyikkvhl
Flexible Loop (DISEMBL)
HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL
Low Complexity Region (SEG)
HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFqlqslllssGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL
Disordered region (IsUnstruct)
******ELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKK***
Disordered Region (DISOPRED)
HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL
Disordered Region (DISEMBL)
HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL
Disordered Region (DISPRO)
*LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.933	0.235	0.319	5e-26
Q9FL28	1173	LRR receptor-like serine/	no	no	0.939	0.252	0.318	2e-24
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.920	0.243	0.320	1e-23
O49318	1124	Probable leucine-rich rep	no	no	0.761	0.213	0.316	4e-22
O22938	890	Leucine-rich repeat recep	no	no	0.701	0.248	0.323	5e-22
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.939	0.260	0.308	5e-22
Q9LP24	1120	Probable leucine-rich rep	no	no	0.869	0.244	0.312	1e-21
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.660	0.188	0.343	2e-21
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.955	0.276	0.306	2e-21
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.876	0.241	0.306	3e-21

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 160/341 (46%), Gaps = 47/341 (13%)

Query: 1   HLTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITE------------ 46
           +LTS+E L+L +N    +IP  L  L N   ++ L   +NE+  +I E            
Sbjct: 117 NLTSLESLFLFSNQLTGEIPSQLGSLVN---IRSLRIGDNELVGDIPETLGNLVNLQMLA 173

Query: 47  --SHSLTAPN-------FQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFP 97
             S  LT P         ++QSL+L   Y +G   P  L +  DL     +   +NG  P
Sbjct: 174 LASCRLTGPIPSQLGRLVRVQSLILQDNYLEG-PIPAELGNCSDLTVFTAAENMLNGTIP 232

Query: 98  NWL--LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPS 155
             L  LEN   LE L L N+S+ G     +    +L++L +  N  QG IP  + D L +
Sbjct: 233 AELGRLEN---LEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLAD-LGN 288

Query: 156 LFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215
           L + ++S N L G IP  F NM+ L  L L++N L+G +P+ +     NLE L LS   L
Sbjct: 289 LQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQL 348

Query: 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPK----- 270
            G +        +L+QL L +N   G IP++L +   L  LYL+NN+L     P      
Sbjct: 349 SGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLT 408

Query: 271 ---------NHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
                    N+LEG +P E   L  L +L + +N  SG +P
Sbjct: 409 NLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIP 449

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 166/349 (47%), Gaps = 53/349 (15%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQS 59
           +L +++ L L+ N  +  I  E + N S L +L  Y+N++  +I  E  +L     QLQ+
Sbjct: 238 NLLNLQSLVLTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKIPAELGNLV----QLQA 292

Query: 60  LLLSSGYGDGVT--FPKFLYHQHDLEDVHLSHIKMNGKFPNWL--LENNAKLETLFLIND 115
           L +   Y + +T   P  L+    L  + LS   + G     +  LE+   LE L L ++
Sbjct: 293 LRI---YKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSN 346

Query: 116 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
           +  G F   I   R L  L V  NN  G +P ++G +L +L + +   N L G IPSS  
Sbjct: 347 NFTGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSIS 405

Query: 176 NMNFLRILDLSSNQLTGEIPER--------LAVG--------------CVNLEFLALSNN 213
           N   L++LDLS NQ+TGEIP          +++G              C NLE L++++N
Sbjct: 406 NCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query: 214 NLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS----------- 262
           NL G +      L  LR LQ+  N   G IP+ +     L  LYL++N            
Sbjct: 466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN 525

Query: 263 ---LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
              L  + M  N LEGPIP E   +  L +LD+S+N  SG +P+ F  L
Sbjct: 526 LTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKL 574

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 31/321 (9%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LTS+  L L+ N FQ  I +E L + + L  L   +N ++ +I +  +  A   QLQ L
Sbjct: 494 KLTSLSVLNLNANMFQGKIPVE-LGDCTSLTTLDLGSNNLQGQIPDKITALA---QLQCL 549

Query: 61  LLSSG--YGDGVTFPKFLYHQHDLEDV---------HLSHIKMNGKFPNWLLENNAKLET 109
           +LS     G   + P   +HQ ++ D+          LS+ +++G  P  L E    +E 
Sbjct: 550 VLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVE- 608

Query: 110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGS 169
           + L N+ + G     +     L  LD+S N   G IP E+G+ L  L   N++ N L+G 
Sbjct: 609 ISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSL-KLQGLNLANNQLNGH 667

Query: 170 IPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANL 229
           IP SFG +  L  L+L+ N+L G +P  L      L  + LS NNL G +      +  L
Sbjct: 668 IPESFGLLGSLVKLNLTKNKLDGPVPASLG-NLKELTHMDLSFNNLSGELSSELSTMEKL 726

Query: 230 RQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHI 289
             L +E N+F GEIP  L   + LE  YL+        + +N L G IP + C L +L  
Sbjct: 727 VGLYIEQNKFTGEIPSELGNLTQLE--YLD--------VSENLLSGEIPTKICGLPNLEF 776

Query: 290 LDISDNNISGSLPS---CFHP 307
           L+++ NN+ G +PS   C  P
Sbjct: 777 LNLAKNNLRGEVPSDGVCQDP 797

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 130/262 (49%), Gaps = 22/262 (8%)

Query: 57  LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS 116
           + SL LSS    G+  P  +    +L  ++L++  + G  P  +  N +KLE +FL N+ 
Sbjct: 87  VTSLDLSSMNLSGIVSPS-IGGLVNLVYLNLAYNALTGDIPREI-GNCSKLEVMFLNNNQ 144

Query: 117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI--LPSLFSFNISTNALHGSIPSSF 174
            GG   + I+   +LR  ++ NN   G +P EIGD+  L  L ++   TN L G +P S 
Sbjct: 145 FGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAY---TNNLTGPLPRSL 201

Query: 175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL 234
           GN+N L       N  +G IP  +   C+NL+ L L+ N + G +      L  L+++ L
Sbjct: 202 GNLNKLTTFRAGQNDFSGNIPTEIG-KCLNLKLLGLAQNFISGELPKEIGMLVKLQEVIL 260

Query: 235 EDNRFIGEIPQSLSKCSSLEGLYL--------------NNNSLSDITMPKNHLEGPIPVE 280
             N+F G IP+ +   +SLE L L              N  SL  + + +N L G IP E
Sbjct: 261 WQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKE 320

Query: 281 FCQLYSLHILDISDNNISGSLP 302
             +L  +  +D S+N +SG +P
Sbjct: 321 LGKLSKVMEIDFSENLLSGEIP 342

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 17/238 (7%)

Query: 80  HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 139
             L+ + LS    NG+ P     N ++LE L L  +   G   +     R LR  ++SNN
Sbjct: 86  RSLKHLDLSGNNFNGRIPTSF-GNLSELEFLDLSLNRFVGAIPVEFGKLRGLRAFNISNN 144

Query: 140 NFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLA 199
              G IP E+  +L  L  F +S N L+GSIP   GN++ LR+     N L GEIP  L 
Sbjct: 145 LLVGEIPDEL-KVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPNGLG 203

Query: 200 VGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLN 259
           +    LE L L +N L+G +    F    L+ L L  NR  GE+P+++  CS L  + + 
Sbjct: 204 L-VSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEAVGICSGLSSIRIG 262

Query: 260 NNSLSDIT--------------MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
           NN L  +                 KN+L G I  EF +  +L +L+++ N  +G++P+
Sbjct: 263 NNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSKCSNLTLLNLAANGFAGTIPT 320

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 166/350 (47%), Gaps = 54/350 (15%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNN----EIKAEITESHSLTAPNFQ 56
           ++ S++ L +S N F   I  + + N  RL+ L   NN    EI  EI +  SL   +F+
Sbjct: 330 NILSLKNLDVSGNLFSGEIPPD-IGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFE 388

Query: 57  LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS 116
             SL            P+FL +   L+ + L     +G  P+ ++ N  +LE L L  ++
Sbjct: 389 GNSL--------KGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMV-NLQQLERLNLGENN 439

Query: 117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGN 176
           + G F + +     L  LD+S N F G +PV I + L +L   N+S N   G IP+S GN
Sbjct: 440 LNGSFPVELMALTSLSELDLSGNRFSGAVPVSISN-LSNLSFLNLSGNGFSGEIPASVGN 498

Query: 177 MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLED 236
           +  L  LDLS   ++GE+P  L+ G  N++ +AL  NN  G +     +L +LR + L  
Sbjct: 499 LFKLTALDLSKQNMSGEVPVELS-GLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSS 557

Query: 237 NRFIGEIPQS------------------------LSKCSSLEGLYLNNNSL-----SDIT 267
           N F GEIPQ+                        +  CS+LE L L +N L     +D++
Sbjct: 558 NSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLS 617

Query: 268 ---------MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
                    + +N+L G IP E  Q  SL+ L +  N++SG +P  F  L
Sbjct: 618 RLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGL 667

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 139/298 (46%), Gaps = 24/298 (8%)

Query: 26  NHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDV 85
           N ++L+ L+   N +   I       A +  L +L+L +    G  FP+ +     L+++
Sbjct: 436 NFTKLESLYLRVNHLSGAIPPG---VANSSHLTTLILDTNNFTGF-FPETVCKGRKLQNI 491

Query: 86  HLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGH 144
            L +  + G  P  L +  + +   FL N   G  F    I+P   L F+D S+N F G 
Sbjct: 492 SLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPD--LNFIDFSHNKFHGE 549

Query: 145 IPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG-CV 203
           I     +  P L +  +S N + G+IP+   NM  L  LDLS+N L GE+PE  A+G   
Sbjct: 550 ISSNW-EKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPE--AIGNLT 606

Query: 204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS- 262
           NL  L L+ N L G +      L NL  L L  N F  EIPQ+      L  + L+ N  
Sbjct: 607 NLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKF 666

Query: 263 ------------LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
                       L+ + +  N L+G IP +   L SL  LD+S NN+SG +P+ F  +
Sbjct: 667 DGSIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGM 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 110/221 (49%), Gaps = 13/221 (5%)

Query: 82  LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF 141
           L+ + LS+  ++GK P  +  N + LE L L N+   G   + I     L  L + NN  
Sbjct: 99  LKQLDLSYNGLSGKIPKEI-GNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRI 157

Query: 142 QGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG 201
            G +PVEIG++L SL      +N + G +P S GN+  L       N ++G +P  +  G
Sbjct: 158 SGSLPVEIGNLL-SLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIG-G 215

Query: 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261
           C +L  L L+ N L G +      L  L Q+ L +N F G IP+ +S C+SLE L L   
Sbjct: 216 CESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALY-- 273

Query: 262 SLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
                   KN L GPIP E   L SL  L +  N ++G++P
Sbjct: 274 --------KNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIP 306

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 165/379 (43%), Gaps = 78/379 (20%)

Query: 3   TSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           TS+E L LSNN F  ++P     L N   L  L+   N +   I  S        +L  L
Sbjct: 124 TSLEYLDLSNNDFSGEVPDIFGSLQN---LTFLYLDRNNLSGLIPAS---VGGLIELVDL 177

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPN--WLLENNAKLETLFLINDSIG 118
            +S     G T P+ L +   LE + L++ K+NG  P   +LLEN   L  LF+ N+S+G
Sbjct: 178 RMSYNNLSG-TIPELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSLG 233

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
           G         ++L  LD+S N+FQG +P EIG+   SL S  +    L G+IPSS G + 
Sbjct: 234 GRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGMLR 292

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--------------------- 217
            + ++DLS N+L+G IP+ L   C +LE L L++N L+G                     
Sbjct: 293 KVSVIDLSDNRLSGNIPQELG-NCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNK 351

Query: 218 ----------------HMFCRN-----------FNLANLRQLQLEDNRFIGEIPQSLSKC 250
                            M   N             L +L++L L +N F G+IP SL   
Sbjct: 352 LSGEIPIGIWKIQSLTQMLVYNNTLTGELPVEVTQLKHLKKLTLFNNGFYGDIPMSLGLN 411

Query: 251 SSLEGLYLNNNSLSDITMP--------------KNHLEGPIPVEFCQLYSLHILDISDNN 296
            SLE + L  N  +    P               N L G IP    Q  +L  + + DN 
Sbjct: 412 RSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQCKTLERVRLEDNK 471

Query: 297 ISGSLPSCFHPLYIKKVHL 315
           +SG LP     L +  V+L
Sbjct: 472 LSGVLPEFPESLSLSYVNL 490

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 153/333 (45%), Gaps = 57/333 (17%)

Query: 3   TSIEELYLSNNHF--QIPISLEPL-------FNHSRLKRLWAYNNEIKAEITESHSLTAP 53
           T+++ L LS N+F  QIP S   L        +H+RL   W     I  EI ++      
Sbjct: 228 TNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTG-W-----IPPEIGDTCR---- 277

Query: 54  NFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLI 113
              LQ+L LS     GV  P+ L     L+ + LS+  ++G FPN +L +   L+ L L 
Sbjct: 278 --SLQNLRLSYNNFTGV-IPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLS 334

Query: 114 NDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEI------------------GDILPS 155
           N+ I G F   I   + LR  D S+N F G IP ++                  G+I P+
Sbjct: 335 NNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPA 394

Query: 156 ------LFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLA 209
                 L + ++S N L+G+IP   GN+  L       N + GEIP  +     NL+ L 
Sbjct: 395 ISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIG-KLQNLKDLI 453

Query: 210 LSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMP 269
           L+NN L G +    FN +N+  +    NR  GE+P+     S L  L L NN+ +     
Sbjct: 454 LNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFT----- 508

Query: 270 KNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
                G IP E  +  +L  LD++ N+++G +P
Sbjct: 509 -----GEIPPELGKCTTLVWLDLNTNHLTGEIP 536

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
255581263	912	serine-threonine protein kinase, plant-t	0.980	0.338	0.536	6e-83
224142481	781	predicted protein [Populus trichocarpa]	0.926	0.373	0.516	2e-67
224102049	577	predicted protein [Populus trichocarpa]	0.958	0.523	0.504	2e-66
224158883	315	predicted protein [Populus trichocarpa]	0.828	0.828	0.532	2e-64
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.980	0.211	0.462	3e-61
224120284	929	predicted protein [Populus trichocarpa]	0.914	0.310	0.449	3e-57
224106950	863	predicted protein [Populus trichocarpa]	0.977	0.356	0.432	4e-57
224106948	658	predicted protein [Populus trichocarpa]	0.946	0.452	0.431	3e-55
224112245	876	predicted protein [Populus trichocarpa]	0.971	0.349	0.389	1e-54
224123984	1016	predicted protein [Populus trichocarpa]	0.984	0.305	0.430	2e-54

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  313 bits (802), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/328 (53%), Positives = 224/328 (68%), Gaps = 19/328 (5%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
           L S+ +L +SNNHFQ+P SL P FNHS LK +   NN I  E  E HS  AP FQL S++
Sbjct: 275 LKSLVDLDVSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISII 331

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
            S GYG   TFP FLYHQ++L+ V LSH+ + G+FPNWLL NN +LE L L+N+S+ G  
Sbjct: 332 FS-GYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHL 390

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
           +LP+HPH  L  LD+SNN+   HIP+EIG  LP L   N+S+N   GSIPSSFGNMN LR
Sbjct: 391 QLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLR 450

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
           ILDLS+NQL+G IPE LA GC +L  L LSNN+L+G MF + FNL NL  L+L+ N F G
Sbjct: 451 ILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSG 510

Query: 242 EIPQSLSKCSSLEGLYLNNNSLS--------------DITMPKNHLEGPIPVEFCQLYSL 287
            IP+SLSK S+L  + L++N LS              ++ +  N L+GPIPVEFCQL+ L
Sbjct: 511 RIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYL 569

Query: 288 HILDISDNNISGSLPSCFHPLYIKKVHL 315
            +LD+++N++SG LPSC  P  I  VHL
Sbjct: 570 EVLDLANNSVSGILPSCLSPSSIIHVHL 597

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/304 (51%), Positives = 196/304 (64%), Gaps = 12/304 (3%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
           LTSI +L LS+NHFQIPISL P FN S LK L   +NEI       H+L  P FQLQ L 
Sbjct: 124 LTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQRLS 182

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
           L+  +G G TFPKFLY+QHDL+ V LSHIK+ G+FP+WLL+NN KLE L+L+N S+ G  
Sbjct: 183 LAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSL 241

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
           +LP   H  L  LD+S N+ Q  IP +IG   P L   N+S N   GSIPSS  NM+ L 
Sbjct: 242 QLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLG 301

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
           +LDLS+N L+G IPE+L  GC++L  L LSNN+LKG  F R+FNLA L  L L  N+  G
Sbjct: 302 VLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTG 361

Query: 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL 301
            +P SLS  S LE L        D+++  N+L G IP     + SL  LD+S+NN+ GSL
Sbjct: 362 ILPNSLSNGSRLEAL--------DVSL--NNLSGKIPRWIGYMSSLQYLDLSENNLYGSL 411

Query: 302 PSCF 305
           PS F
Sbjct: 412 PSSF 415

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102049|ref|XP_002334215.1| predicted protein [Populus trichocarpa] gi|222870030|gb|EEF07161.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 159/315 (50%), Positives = 197/315 (62%), Gaps = 13/315 (4%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
           LTSI +L LS+NHFQIPISL P FN S LK L    NE+       H+L  P FQLQ L 
Sbjct: 59  LTSIRDLNLSDNHFQIPISLGPFFNLSNLKNLNGDRNELYESTELVHNLI-PRFQLQRLS 117

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
           L+   G G TF K LY+QHDL+ V LSHIKM G+FP+WLL+NN KLE L+L+N+S  G F
Sbjct: 118 LAYT-GSGGTFLKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEELYLVNNSFSGSF 176

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
           +L  H   RL  LD+S N+    IP EIG   P L   N+S N   GSIPSS  NM+ L 
Sbjct: 177 QLANHSLDRLSHLDISRNHIHNQIPTEIGACFPRLVFLNLSRNDFGGSIPSSISNMSSLE 236

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
           ILDLS+N+L+G IPE L   C++L  L LSNN+LKG  F RNFNLA L  L L  N+  G
Sbjct: 237 ILDLSNNELSGNIPEHLVEDCLSLRGLVLSNNHLKGQFFWRNFNLAYLTDLILSGNQLTG 296

Query: 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL 301
            +P SLS  S LE L        D+++  N+L G IP     + SL  LD+S+NN+ GSL
Sbjct: 297 ILPNSLSNGSRLEAL--------DVSL--NNLSGKIPRWIRNMSSLEYLDLSENNLFGSL 346

Query: 302 PSCF-HPLYIKKVHL 315
           PS F   + + +V+L
Sbjct: 347 PSSFCSSMMMTEVYL 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224158883|ref|XP_002338020.1| predicted protein [Populus trichocarpa] gi|222870336|gb|EEF07467.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/263 (53%), Positives = 178/263 (67%), Gaps = 2/263 (0%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
           LTSI++L LS+NHF+IPISL P FN S+LK L   +NEI       H+L  P FQLQ L 
Sbjct: 53  LTSIQDLRLSHNHFKIPISLGPFFNLSKLKHLNGDHNEIYESTELVHNLI-PRFQLQWLS 111

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
           L    G G TFPK LY+QHDL+ V LSHIKM G+FP+WLL+NN KLE L+L+N+S+ G F
Sbjct: 112 LEC-TGSGGTFPKSLYYQHDLQFVDLSHIKMTGEFPSWLLQNNTKLEGLYLVNNSLSGSF 170

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
           +L  H   RL  LD+S N     IP EIG   P L   N+S N   GSIPSS  NM+ L+
Sbjct: 171 QLANHSLVRLSHLDISRNRIHNQIPTEIGACFPRLVFLNLSRNDFDGSIPSSISNMSLLK 230

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
           +LDLS+N L+G IPE+L  GC++LE + LSNN  +G +F +NFNL  L +L L  N+  G
Sbjct: 231 VLDLSNNNLSGNIPEQLVEGCLSLEVIMLSNNYFEGQLFWKNFNLTYLTELILRGNQLTG 290

Query: 242 EIPQSLSKCSSLEGLYLNNNSLS 264
            +P SLS CS+LE L ++NN+LS
Sbjct: 291 ILPNSLSSCSALEALDVSNNNLS 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 153/331 (46%), Positives = 199/331 (60%), Gaps = 22/331 (6%)

Query: 2    LTSIEELYLSNNHFQIPISLEPLFNHSRLK--RLWAYNNEIKAEITESHSLT-APNFQLQ 58
            L  +E L LS+N FQ    +     HS+L+   L   NN +   + ES   T  P+FQL+
Sbjct: 790  LMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTL---LLESEDQTWVPSFQLK 846

Query: 59   SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
               LSS      + P FL++QHDL  V LS+  +   FP WL++NN +LE L L N+S+ 
Sbjct: 847  VFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLT 906

Query: 119  GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
            G F LP  P+     +D+SNN  QG +P  I   LP+L   N+S N+  GSIP SFG M 
Sbjct: 907  GYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGGMR 965

Query: 179  FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR 238
             L  LDLS+N  TG IPE LA+GC +LE+L LS N+L G MF R  NL +LR L+L+DN 
Sbjct: 966  KLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNH 1025

Query: 239  FIGEIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQL 284
            F G+IP  LS  S LE LY+++NS+S               + MP N LEGPIPVEFC L
Sbjct: 1026 FSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSL 1084

Query: 285  YSLHILDISDNNISGSLPSCFHPLYIKKVHL 315
             +L +LD+S+NN+SGSLPSCF P  +  VHL
Sbjct: 1085 DALELLDLSNNNLSGSLPSCFSPSLLIHVHL 1115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/309 (44%), Positives = 188/309 (60%), Gaps = 21/309 (6%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
           LTSI+EL LS+N+FQIPISL    NHS LK  + YNNEI AE+ E H+L  P FQLQ L 
Sbjct: 384 LTSIQELRLSDNNFQIPISLRSFSNHSELKFFFGYNNEICAEL-EEHNLI-PKFQLQRLH 441

Query: 62  LSS-GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
           LS   YG  + FPKFL++QH+L +++ S+++M G  PNWLLENN  L  LFL+N+S+ GP
Sbjct: 442 LSGQAYGGALPFPKFLFYQHNLREIYFSNMRMRGGVPNWLLENNTNLHELFLVNNSLSGP 501

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
           F+LPIHPH  L  LD+S+N+   HIP EIG   PSL   ++S N  +G IPSSFG M+ L
Sbjct: 502 FQLPIHPHVSLSQLDISDNHLDSHIPTEIGAYFPSLTFLSMSKNHFNGIIPSSFGYMSSL 561

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM---FCRNFNLANLRQLQLEDN 237
            +LDLS N ++G++P       + L  + LS N L+G +   F ++F L     L L  N
Sbjct: 562 LVLDLSENNISGKLPS--CFSSLPLVHVYLSQNKLQGSLEDAFHKSFELIT---LDLSHN 616

Query: 238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297
           +  G I + + + S +  L L            N+LEG IP + C+L  L  +D+S N  
Sbjct: 617 QLTGNISEWIGEFSHMSYLLLG----------YNNLEGRIPNQLCKLDKLSFIDLSHNKF 666

Query: 298 SGSLPSCFH 306
           SG +  C  
Sbjct: 667 SGHILPCLR 675

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106950|ref|XP_002333589.1| predicted protein [Populus trichocarpa] gi|222837497|gb|EEE75876.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/328 (43%), Positives = 197/328 (60%), Gaps = 20/328 (6%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           ++TS++ LYLS+NH +IP+SL PL+N S+LK  +   NEI AE  + H+LT P FQL+SL
Sbjct: 337 NMTSLQRLYLSSNHLKIPMSLSPLYNLSKLKSFYGSGNEIYAE-EDDHNLT-PKFQLESL 394

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS+G  +   FPKFLYHQ  L+ + L++I++ G+FPNWL+ENN  L+ L L N S+ GP
Sbjct: 395 SLSNGGQNTRAFPKFLYHQFSLQSLDLTNIQIKGEFPNWLIENNTYLKLLSLENCSLSGP 454

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
           F LP   H  L FL +S N+FQG IP EIG     L    +S N  +GSIPSS GNM+ +
Sbjct: 455 FLLPKSSHVNLSFLSISMNHFQGQIPSEIGAHFSGLEVLLMSDNGFNGSIPSSLGNMSLM 514

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             LDLS+N L G+IP  +     +LEFL LS NNL G +  R    + LR + L  NR  
Sbjct: 515 YELDLSNNSLQGQIPGWIG-NMSSLEFLDLSRNNLSGPLPPRFGTSSKLRDVFLSRNRLQ 573

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYS 286
           G I  + S  S +  L L++N L+               + +  N+LEG IP+  C+L  
Sbjct: 574 GPIAMAFSDSSEIFALDLSHNDLTGRIPEWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQ 633

Query: 287 LHILDISDNNISGSLPSCF---HPLYIK 311
           L ++D+S N +SG++ S     HP  I+
Sbjct: 634 LTVIDLSHNYLSGNILSWMISTHPFPIQ 661

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106948|ref|XP_002333588.1| predicted protein [Populus trichocarpa] gi|222837496|gb|EEE75875.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/315 (43%), Positives = 191/315 (60%), Gaps = 17/315 (5%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           ++TS++ LYLS+NH +IP+SL PL+N S+LK  +   NEI AE  + H+LT P FQL+SL
Sbjct: 101 NMTSLQRLYLSSNHLKIPMSLSPLYNLSKLKSFYGSGNEICAE-EDDHNLT-PKFQLESL 158

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS+G  +   FPKFLYHQ  L+ + L++ ++ G+FPNWL+ENN  L+ L L N S+ GP
Sbjct: 159 SLSNGGQNTRAFPKFLYHQFSLQSLDLTNFQIKGEFPNWLIENNTYLKRLSLENCSLSGP 218

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
           F LP   H  L FL +S N+FQG IP EI   LP L    +S N  +GSIPSS GNM+ +
Sbjct: 219 FLLPKSSHVNLSFLSISMNHFQGQIPSEIRAHLPGLEVLLMSDNGFNGSIPSSLGNMSLM 278

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             LDLS+N L G+IP  +     +LEFL LS NNL G +  R    + LR + L  N+  
Sbjct: 279 YELDLSNNSLQGQIPGWIG-NMSSLEFLDLSRNNLSGPLPPRFNTSSKLRVVYLSRNKLQ 337

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYS 286
           G I  +    S +  L L++N L+               + +  N+LEG IP+  C+L  
Sbjct: 338 GPIAMAFYDSSEIFALDLSHNDLTGRIPEWIGRLSNLRFLLLSYNNLEGEIPIRLCRLDQ 397

Query: 287 LHILDISDNNISGSL 301
           L ++D+S N +SG++
Sbjct: 398 LTVIDLSHNYLSGNI 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112245|ref|XP_002332815.1| predicted protein [Populus trichocarpa] gi|222833209|gb|EEE71686.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/370 (38%), Positives = 201/370 (54%), Gaps = 64/370 (17%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +LTS++ L LS+NH +IP+SL PL+N S+LK     +NEI AE  + H+L +P FQLQSL
Sbjct: 291 NLTSLQRLDLSSNHLKIPMSLSPLYNLSKLKSFHGLDNEIYAE-EDDHNL-SPKFQLQSL 348

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS+       FP+FLYHQ +L+ + L++I+M G FPNWL+ENN  L+ L+L N S+ GP
Sbjct: 349 YLSNHGQGARAFPRFLYHQLNLQSLDLTNIQMKGDFPNWLIENNTYLKNLYLENCSLSGP 408

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
           F LP + H  L  L +S N  QG IP EIG  LP L   ++S N  +GSIPSS  NM+ L
Sbjct: 409 FLLPKNSHMNLSILSISMNYLQGQIPSEIGAHLPRLTVLSMSHNGFNGSIPSSLSNMSLL 468

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM-----FCRNFNLANLRQ---- 231
           R LDLS+N LTG IP+ L        FL LSNN+L+G +      C +  L ++      
Sbjct: 469 RDLDLSNNVLTGRIPKHLTTSLCLFNFLILSNNSLQGAIPDSMSNCSSLQLLDVSNNNLS 528

Query: 232 ---------------LQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI---------- 266
                          L L  N F G +P ++S  S+L  +YL+ N L  +          
Sbjct: 529 PRIPGWIWSMSFLDFLDLSRNNFSGPLPPTISTSSTLRYVYLSRNKLQGLITKAFYNFST 588

Query: 267 -------------TMPK---------------NHLEGPIPVEFCQLYSLHILDISDNNIS 298
                        T+P+               N LEG IP++ C+L  L ++D+S N++S
Sbjct: 589 LLTLDLSHNNLIGTIPEWIGSLSKLRYLLLSYNKLEGEIPIQLCKLDGLTLIDLSHNHLS 648

Query: 299 GSLPSCFHPL 308
           G++ SC   L
Sbjct: 649 GNILSCMTSL 658

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 143/332 (43%), Positives = 187/332 (56%), Gaps = 22/332 (6%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQ-- 58
           +L S+E + LSNNHFQ+PIS++P  NHS L+   + NN +  E    H L  P FQL   
Sbjct: 336 NLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMSFHDLI-PKFQLVFF 394

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
           SL  SS     V  P FLY+QHDL  + LS     G FP+WLL+NN +LE LFL  +S  
Sbjct: 395 SLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFF 454

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
           G  +L  HP+  +  +D+SNNN  G IP  I  I  +L++  ++ N L G IPS  GN +
Sbjct: 455 GTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSS 514

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR 238
            L +LDLS+NQL+    E+     + L FL LSNNNL G +     N + L  L L DN 
Sbjct: 515 SLGVLDLSNNQLSMVELEQF----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNN 570

Query: 239 FIGEIPQSLSKCSSLEG-LYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQ 283
           F G+I    S   ++   L L+NN  S               I + KNH  GPIPVEFC+
Sbjct: 571 FWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCK 630

Query: 284 LYSLHILDISDNNISGSLPSCFHPLYIKKVHL 315
           L  L  LD+SDNN+  S+PSCF+P +I  VHL
Sbjct: 631 LDELKYLDLSDNNLFDSIPSCFNPPHITHVHL 662

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.955	0.301	0.365	3.5e-40
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.939	0.306	0.358	3.5e-38
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.930	0.270	0.355	5.8e-38
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.971	0.313	0.360	2.6e-37
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.911	0.316	0.357	1.1e-35
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.933	0.329	0.329	1.7e-34
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.723	0.243	0.367	6.5e-31
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.920	0.266	0.324	1.6e-26
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.879	0.254	0.340	2.7e-26
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.917	0.294	0.323	7.7e-26

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 3.5e-40, P = 3.5e-40
 Identities = 119/326 (36%), Positives = 165/326 (50%)

Query:     1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLK--RLWAYNNEIKAEITESHSLTAPNFXXX 58
             +L S+E L L  N+F+   SL  L N S+LK  RL + +N ++ E   S     P F   
Sbjct:   304 NLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWK---PKFQLV 360

Query:    59 XXXXXXGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
                      + V  P FL HQ DL  V LS  +++G FP+WLLENN KLE L L N+S  
Sbjct:   361 VIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFT 418

Query:   119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVE-IGDILPSLFSFNISTNALHGSIPSSFGNM 177
               F+LP   H  L FL+VS N F  H+ ++  G ILP L   N++ N   G++PSS  NM
Sbjct:   419 S-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNM 475

Query:   178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN 237
               +  LDLS N+  G++P R   GC NL  L LS+N L G +F    N   L  + +++N
Sbjct:   476 KSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNN 535

Query:   238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDIT--------------MPKNHLEGPIPVEFCQ 283
              F G I +      SL  L ++NN L+ +               +  N LEG IP     
Sbjct:   536 LFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFN 595

Query:   284 LYSLHILDISDNNISGSLPSCFHPLY 309
             +  L +LD+S N +SG +P     +Y
Sbjct:   596 ISYLQLLDLSSNRLSGDIPPHVSSIY 621

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 3.5e-38, P = 3.5e-38
 Identities = 113/315 (35%), Positives = 158/315 (50%)

Query:     2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFXXXXXX 61
             L S+E L L +N F+   S   L N S L  L   +     ++  S S   P F      
Sbjct:   291 LQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIA 349

Query:    62 XXXGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
                   + V  P FL HQ DL  V LS   ++GK P+WLL NN KL+ L L N+     F
Sbjct:   350 LRSCNMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-F 406

Query:   122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
             ++P   H  L FLDVS N+F    P  IG I P L   N S N    ++PSS GNMN ++
Sbjct:   407 QIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQ 465

Query:   182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
              +DLS N   G +P     GC ++  L LS+N L G +F  + N  N+  L +++N F G
Sbjct:   466 YMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTG 525

Query:   242 EIPQSLSKCSSLEGLYLNNNSLSDIT------MPK--------NHLEGPIPVEFCQLYSL 287
             +I Q L    +LE L ++NN+L+ +       +P         N L+G IP+      SL
Sbjct:   526 KIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSL 585

Query:   288 HILDISDNNISGSLP 302
              +LD+S N++SG +P
Sbjct:   586 QLLDLSANSLSGVIP 600

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 5.8e-38, P = 5.8e-38
 Identities = 111/312 (35%), Positives = 164/312 (52%)

Query:     5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFXXXXXXXXX 64
             +E L L +N+F        L N +RL  ++  ++++     ++ S  AP F         
Sbjct:   408 LEYLSLLDNNFDGSFLFNSLVNQTRLT-VFKLSSKVGVIQVQTESSWAPLFQLKMLYLS- 465

Query:    65 GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLP 124
                 G T   FL HQ DL  V LSH K+ G FP WL++NN +L+T+ L  +S+    +LP
Sbjct:   466 NCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLP 524

Query:   125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILD 184
             I  H  L+ LD+S+N     I  +IG + P+L   N S+N   G+IPSS G M  L++LD
Sbjct:   525 ILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLD 583

Query:   185 LSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP 244
             +SSN L G++P     GC +L  L LSNN L+G +F ++ NL  L  L L+ N F G + 
Sbjct:   584 MSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLE 643

Query:   245 QSLSKCSSLEGLYLNNNS--------------LSDITMPKNHLEGPIPVEFCQLYSLHIL 290
             + L K  +L  L +++N               LS + M  N L+GP P    Q   + ++
Sbjct:   644 EGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVM 702

Query:   291 DISDNNISGSLP 302
             DIS N+ SGS+P
Sbjct:   703 DISHNSFSGSIP 714

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.6e-37, P = 2.6e-37
 Identities = 120/333 (36%), Positives = 174/333 (52%)

Query:     2 LTSIEELYLSNNHFQIPISLEPLFNHSRLK--RLWAYNNEIKAEITESHSLTAPNFXXXX 59
             L S+E L LS+N+F+   SL PL N ++LK  RL + +  ++ E TES+ L  P F    
Sbjct:   307 LESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSSTSEMLQVE-TESNWL--PKFQLTV 363

Query:    60 XXXXX-GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
                     G     P FL +Q +L  V LS  +++G  P WLLENN +L+ L L N+S  
Sbjct:   364 AALPFCSLGK---IPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT 420

Query:   119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
               F++P   H+ L+ LD S N+  G +P  IG +LP L   N S N   G++PSS G MN
Sbjct:   421 -IFQIPTIVHK-LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMN 478

Query:   179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR 238
              +  LDLS N  +GE+P  L  GC +L  L LS+N+  G +      L +L  L++ +N 
Sbjct:   479 DISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNL 538

Query:   239 FIGEIPQSLSKCSSLEGLYLNNNSLSDI---TMP------------KNHLEGPIPVEFCQ 283
             F GEI   L    +L     +NN L+ +   ++P             N LEG +P     
Sbjct:   539 FTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLA 598

Query:   284 LYSLHILDISDNNISGSLPSCF-HPLYIKKVHL 315
             ++ L+ LD+S N +SG LPS   + +Y  K+ L
Sbjct:   599 IHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFL 631

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 108/302 (35%), Positives = 152/302 (50%)

Query:     2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFXXXXXX 61
             L S+E L LS+N F+   SL PL N ++LK ++ ++++      +  S   P F      
Sbjct:   267 LESLEYLSLSDNSFEGFFSLNPLTNLTKLK-VFIFSSKDDMVQVKIESTWQPLFQLSVLV 325

Query:    62 XXXGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
                   + +  P FL +Q +L  V LS  +++G  P WLLENN +LE L L N+S    F
Sbjct:   326 LRLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IF 382

Query:   122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
             ++P   H  L+ LD S NN  G  P   G +LP+L   N S N   G+ PSS G M  + 
Sbjct:   383 QMPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNIS 441

Query:   182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
              LDLS N L+GE+P+     C +L  L LS+N   GH   R  N  +L  L++ +N F G
Sbjct:   442 FLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTG 501

Query:   242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL 301
             +I   L          L    L  + M  N LEG +P        L+ LD+S N +SG+L
Sbjct:   502 KIGVGL----------LTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGAL 551

Query:   302 PS 303
             PS
Sbjct:   552 PS 553

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 103/313 (32%), Positives = 162/313 (51%)

Query:     4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFXXXXXXXX 63
             S+E L L +N F+   SL  +   + LK     +     +I E++   +           
Sbjct:   227 SMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETN--VSGGLQSQLSSIM 284

Query:    64 XGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRL 123
               + +    P FL++Q +L  + LS+  ++G FP WLLENN +L+ L L N+S      L
Sbjct:   285 LSHCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTL 343

Query:   124 PIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRIL 183
             P    RRL+ LD+S NNF   +P ++G IL SL   N+S N   G++PSS   M  +  +
Sbjct:   344 P-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFM 402

Query:   184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI 243
             DLS N  +G++P  L  GC +L +L LS+N   G +  ++ +  +L  L +++N F G+I
Sbjct:   403 DLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKI 462

Query:   244 PQSLSKCSSLEGLYLNNNSLSDITMPK--------------NHLEGPIPVEFCQLYSLHI 289
             P++L     L  + L+NN L+  T+P+              N L+G IP     +  L +
Sbjct:   463 PRTLLNLRMLSVIDLSNNLLTG-TIPRWLGNFFLEVLRISNNRLQGAIPPSLFNIPYLWL 521

Query:   290 LDISDNNISGSLP 302
             LD+S N +SGSLP
Sbjct:   522 LDLSGNFLSGSLP 534

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 6.5e-31, P = 6.5e-31
 Identities = 90/245 (36%), Positives = 121/245 (49%)

Query:    73 PKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLR 132
             P FL +Q  L  V LS   ++G  P WLL NN +LE L L N+S    F +P   H  L+
Sbjct:   336 PSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQ 393

Query:   133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTG 192
               D S NN  G  P ++   LP+L   N S N   G  P+S G M  +  LDLS N  +G
Sbjct:   394 IFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSG 452

Query:   193 EIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSS 252
             ++P     GCV++ FL LS+N   G    R  N  +L  L++++N F G I   LS  + 
Sbjct:   453 KLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTM 512

Query:   253 LEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
             L  L ++NN LS               + +  N LEG IP     +  L  LD+S N  S
Sbjct:   513 LRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFS 572

Query:   299 GSLPS 303
             G+LPS
Sbjct:   573 GALPS 577

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 103/317 (32%), Positives = 152/317 (47%)

Query:     1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFXXXX 59
             +L +++EL LS N     I  E L N ++L  L   NN+I  EI      LT+       
Sbjct:   335 NLPNLQELQLSVNQLSGTIP-EELANCTKLTHLEIDNNQISGEIPPLIGKLTSLTMFFAW 393

Query:    60 XXXXXGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
                  G       P+ L    +L+ + LS+  ++G  PN + E    L  L L+++ + G
Sbjct:   394 QNQLTGI-----IPESLSQCQELQAIDLSYNNLSGSIPNGIFEIR-NLTKLLLLSNYLSG 447

Query:   120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                  I     L  L ++ N   G+IP EIG+ L +L   +IS N L G+IP        
Sbjct:   448 FIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGN-LKNLNFIDISENRLIGNIPPEISGCTS 506

Query:   180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
             L  +DL SN LTG +P  L     +L+F+ LS+N+L G +     +L  L +L L  NRF
Sbjct:   507 LEFVDLHSNGLTGGLPGTLPK---SLQFIDLSDNSLTGSLPTGIGSLTELTKLNLAKNRF 563

Query:   240 IGEIPQSLSKCSSLEGLYLNNN--------------SLS-DITMPKNHLEGPIPVEFCQL 284
              GEIP+ +S C SL+ L L +N              SL+  + +  NH  G IP  F  L
Sbjct:   564 SGEIPREISSCRSLQLLNLGDNGFTGEIPNELGRIPSLAISLNLSCNHFTGEIPSRFSSL 623

Query:   285 YSLHILDISDNNISGSL 301
              +L  LD+S N ++G+L
Sbjct:   624 TNLGTLDVSHNKLAGNL 640

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 2.7e-26, P = 2.7e-26
 Identities = 104/305 (34%), Positives = 152/305 (49%)

Query:     3 TSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFXXXXX 60
             TS+E L LSNN F  ++P     L N   L  L+   N +   I  S             
Sbjct:   124 TSLEYLDLSNNDFSGEVPDIFGSLQN---LTFLYLDRNNLSGLIPAS-----VGGLIELV 175

Query:    61 XXXXGYGD-GVTFPKFLYHQHDLEDVHLSHIKMNGKFPN--WLLENNAKLETLFLINDSI 117
                  Y +   T P+ L +   LE + L++ K+NG  P   +LLEN   L  LF+ N+S+
Sbjct:   176 DLRMSYNNLSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLEN---LGELFVSNNSL 232

Query:   118 GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177
             GG         ++L  LD+S N+FQG +P EIG+   SL S  +    L G+IPSS G +
Sbjct:   233 GGRLHFGSSNCKKLVSLDLSFNDFQGGVPPEIGNC-SSLHSLVMVKCNLTGTIPSSMGML 291

Query:   178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN 237
               + ++DLS N+L+G IP+ L   C +LE L L++N L+G +      L  L+ L+L  N
Sbjct:   292 RKVSVIDLSDNRLSGNIPQELG-NCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFN 350

Query:   238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297
             +  GEIP  + K  SL  + + NN+L+          G +PVE  QL  L  L + +N  
Sbjct:   351 KLSGEIPIGIWKIQSLTQMLVYNNTLT----------GELPVEVTQLKHLKKLTLFNNGF 400

Query:   298 SGSLP 302
              G +P
Sbjct:   401 YGDIP 405

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 7.7e-26, P = 7.7e-26
 Identities = 101/312 (32%), Positives = 149/312 (47%)

Query:     2 LTSIEELYLSNNHF---QIPISLEPLF----NHSRLKRLWAYNNEIKAEITESHSLTAPN 54
             +  ++ LYLS NHF       +LEP F    N S L+ L    N +  EIT S    + N
Sbjct:   239 MPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVN 298

Query:    55 FXXXXXXXXXGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIN 114
                        +G   + P  + +  +L  ++LS   ++G  P  L + + KLE ++L N
Sbjct:   299 LVQIHLDQNRIHG---SIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLS-KLERVYLSN 354

Query:   115 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSF 174
             + + G   + +    RL  LDVS NN  G IP   G+ L  L    +  N L G++P S 
Sbjct:   355 NHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGN-LSQLRRLLLYGNHLSGTVPQSL 413

Query:   175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLE-FLALSNNNLKGHMFCRNFNLANLRQLQ 233
             G    L ILDLS N LTG IP  +     NL+ +L LS+N+L G +      +  +  + 
Sbjct:   414 GKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVD 473

Query:   234 LEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDIS 293
             L  N   G+IP  L  C +LE L L+ N  S  T+P +   G +P      Y L  LD+S
Sbjct:   474 LSSNELSGKIPPQLGSCIALEHLNLSRNGFSS-TLPSSL--GQLP------Y-LKELDVS 523

Query:   294 DNNISGSLPSCF 305
              N ++G++P  F
Sbjct:   524 FNRLTGAIPPSF 535

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  110 bits (277), Expect = 6e-27
 Identities = 104/322 (32%), Positives = 149/322 (46%), Gaps = 31/322 (9%)

Query: 2   LTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQ 58
           LTS+  L L  N+    IP SL  L     L+ L+ Y N++   I  S  SL     +L 
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNL---KNLQYLFLYQNKLSGPIPPSIFSLQ----KLI 287

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
           SL LS     G   P+ +    +LE +HL      GK P   L +  +L+ L L ++   
Sbjct: 288 SLDLSDNSLSG-EIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFS 345

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
           G     +  H  L  LD+S NN  G IP  +     +LF   + +N+L G IP S G   
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACR 404

Query: 179 FLRILDLSSNQLTGEIP-ERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN 237
            LR + L  N  +GE+P E   +  V   FL +SNNNL+G +  R +++ +L+ L L  N
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVY--FLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 238 RFIGEIPQSLSKCSSLEGLYLNNNSLS--------------DITMPKNHLEGPIPVEFCQ 283
           +F G +P S      LE L L+ N  S               + + +N L G IP E   
Sbjct: 463 KFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Query: 284 LYSLHILDISDNNISGSLPSCF 305
              L  LD+S N +SG +P+ F
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASF 543

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (275), Expect = 1e-26
 Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 14/221 (6%)

Query: 82  LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF 141
           ++ ++LS+ +++G  P+ +   ++ L  L L N++  G   +P      L  LD+SNN  
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IPRGSIPNLETLDLSNNML 152

Query: 142 QGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG 201
            G IP +IG    SL   ++  N L G IP+S  N+  L  L L+SNQL G+IP  L   
Sbjct: 153 SGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-Q 210

Query: 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261
             +L+++ L  NNL G +      L +L  L L  N   G IP SL    +L+ L+L  N
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 262 SLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
            LS          GPIP     L  L  LD+SDN++SG +P
Sbjct: 271 KLS----------GPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (271), Expect = 4e-26
 Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 26/228 (11%)

Query: 86  HLSHIKMNGKFPNW---LLENNAKLETLFLINDSIGGP-----FRLPIHPHRRLRFLDVS 137
           +LS+   +     W      N++++ ++ L   +I G      FRLP      ++ +++S
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPY-----IQTINLS 101

Query: 138 NNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPER 197
           NN   G IP +I     SL   N+S N   GSIP   G++  L  LDLS+N L+GEIP  
Sbjct: 102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND 159

Query: 198 LAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLY 257
           +     +L+ L L  N L G +     NL +L  L L  N+ +G+IP+ L +  SL+ +Y
Sbjct: 160 IGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218

Query: 258 LNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
           L  N+LS          G IP E   L SL+ LD+  NN++G +PS  
Sbjct: 219 LGYNNLS----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  102 bits (256), Expect = 4e-24
 Identities = 96/318 (30%), Positives = 152/318 (47%), Gaps = 51/318 (16%)

Query: 2   LTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
           L ++E L+L +N+F  +IP++L  L    RL+ L  ++N+   EI               
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSL---PRLQVLQLWSNKFSGEI--------------- 348

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
                        PK L   ++L  + LS   + G+ P  L  ++  L  L L ++S+ G
Sbjct: 349 -------------PKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEG 394

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                +   R LR + + +N+F G +P E    LP ++  +IS N L G I S   +M  
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           L++L L+ N+  G +P+  + G   LE L LS N   G +  +  +L+ L QL+L +N+ 
Sbjct: 454 LQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 240 IGEIPQSLSKCSSLEGLYLNNNS--------------LSDITMPKNHLEGPIPVEFCQLY 285
            GEIP  LS C  L  L L++N               LS + + +N L G IP     + 
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571

Query: 286 SLHILDISDNNISGSLPS 303
           SL  ++IS N++ GSLPS
Sbjct: 572 SLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  100 bits (251), Expect = 1e-23
 Identities = 100/308 (32%), Positives = 144/308 (46%), Gaps = 54/308 (17%)

Query: 2   LTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLW-AYNN---EIKAEITESHSLTAPNF 55
           LTS+E L L++N    QIP  L  + +   LK ++  YNN   EI  EI    SL   + 
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 56  QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIND 115
              +L   +G       P  L +  +L+ + L   K++G  P  +  +  KL +L L ++
Sbjct: 244 VYNNL---TG-----PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDN 294

Query: 116 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
           S+ G     +   + L  L + +NNF G IPV +   LP L    + +N   G IP + G
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLG 353

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235
             N L +LDLS+N LTGEIPE L                          +  NL +L L 
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLC-------------------------SSGNLFKLILF 388

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
            N   GEIP+SL  C SL  + L +NS S          G +P EF +L  ++ LDIS+N
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFS----------GELPSEFTKLPLVYFLDISNN 438

Query: 296 NISGSLPS 303
           N+ G + S
Sbjct: 439 NLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.5 bits (240), Expect = 5e-22
 Identities = 105/344 (30%), Positives = 149/344 (43%), Gaps = 72/344 (20%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLL 62
           +S+  L LSNN+F   I    + N   L+ L   NN +  EI                  
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEI------------------ 156

Query: 63  SSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR 122
                D  +F         L+ + L    + GK PN  L N   LE L L ++ + G   
Sbjct: 157 ---PNDIGSF-------SSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIP 205

Query: 123 LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182
             +   + L+++ +  NN  G IP EIG  L SL   ++  N L G IPSS GN+  L+ 
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---------------HMFCRNF--- 224
           L L  N+L+G IP  +      L  L LS+N+L G               H+F  NF   
Sbjct: 265 LFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 225 ------NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS-------------- 264
                 +L  L+ LQL  N+F GEIP++L K ++L  L L+ N+L+              
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383

Query: 265 DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
            + +  N LEG IP       SL  + + DN+ SG LPS F  L
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 1e-20
 Identities = 89/302 (29%), Positives = 127/302 (42%), Gaps = 43/302 (14%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L  I+ + LSNN    PI  +     S L+ L   NN     I      + PN      
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPN------ 141

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
                                LE + LS+  ++G+ PN  + + + L+ L L  + + G 
Sbjct: 142 ---------------------LETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGK 179

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
               +     L FL +++N   G IP E+G  + SL    +  N L G IP   G +  L
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             LDL  N LTG IP  L     NL++L L  N L G +    F+L  L  L L DN   
Sbjct: 239 NHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGS 300
           GEIP+ + +  +LE L+L +          N+  G IPV    L  L +L +  N  SG 
Sbjct: 298 GEIPELVIQLQNLEILHLFS----------NNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 301 LP 302
           +P
Sbjct: 348 IP 349

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 26/114 (22%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE 193
           L + N   +G IP +I   L  L S N+S N++ G+IP S G++  L +LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 194 IPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSL 247
           IPE L                           L +LR L L  N   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
           R L+ +++S N+ +G+IP  +G I  SL   ++S N+ +GSIP S G +  LRIL+L+ N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 189 QLTGEIPERL 198
            L+G +P  L
Sbjct: 501 SLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 208 LALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267
           L L N  L+G +      L +L+ + L  N   G IP SL   +SLE L L+ NS +   
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN--- 479

Query: 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
                  G IP    QL SL IL+++ N++SG +P+
Sbjct: 480 -------GSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 17/218 (7%)

Query: 4   SIEELYLSNNHFQIPISLE----PLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
           S+  + L +N F   +  E    PL     +      NN ++  I  S     P+ Q+ S
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS-----NNNLQGRI-NSRKWDMPSLQMLS 458

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L  +  +G     P   +    LE++ LS  + +G  P  L  + ++L  L L  + + G
Sbjct: 459 LARNKFFGG---LPDS-FGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSG 513

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                +   ++L  LD+S+N   G IP    + +P L   ++S N L G IP + GN+  
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG 217
           L  +++S N L G +P   A   +N   +A  N +L G
Sbjct: 573 LVQVNISHNHLHGSLPSTGAFLAINASAVA-GNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 106 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNA 165
            L+++ L  +SI G     +     L  LD+S N+F G IP  +G  L SL   N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 166 LHGSIPSSFG 175
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNN 214
           +L S ++S N L      +F  +  L++LDLS N LT  I      G  +L  L LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 215 L 215
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
PLN03150	623	hypothetical protein; Provisional	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
PLN03150	623	hypothetical protein; Provisional	98.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG4341	483	consensus F-box protein containing LRR [General fu	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.22
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.18
KOG4341	483	consensus F-box protein containing LRR [General fu	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.06
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.21
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.16
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.47
KOG4308	478	consensus LRR-containing protein [Function unknown	94.38
KOG4308	478	consensus LRR-containing protein [Function unknown	94.07
smart00370	26	LRR Leucine-rich repeats, outliers.	92.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.03
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.35
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.59

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-35  Score=287.11  Aligned_cols=304  Identities=33%  Similarity=0.429  Sum_probs=198.2

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      +++|+.|++++|.+.+.+|.+.+..+++|++|++++|.+++ +|..    .++  +|++|++ ++|.+.+..|..+.+++
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~l~--~L~~L~L-s~n~~~~~~p~~~~~l~  164 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----SIP--NLETLDL-SNNMLSGEIPNDIGSFS  164 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc----ccC--CCCEEEC-cCCcccccCChHHhcCC
Confidence            56788888888877777775445577788888888777765 4432    244  7777888 77777777777777788


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN  160 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  160 (315)
                      +|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|+
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~  242 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLD  242 (968)
T ss_pred             CCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEE
Confidence            88888888887777777764 67777888888777777667777777777777777777776666666655 66777777


Q ss_pred             eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +.+|.+++..|..++.+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            777777666666677777777777777766655555544 3556666666666655555555555555555555555555


Q ss_pred             cccccccccCCCCcEEEccCCcccc--------------------------------------ccCCCCccccCCchhhc
Q 039327          241 GEIPQSLSKCSSLEGLYLNNNSLSD--------------------------------------ITMPKNHLEGPIPVEFC  282 (315)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~n~i~~--------------------------------------l~l~~~~l~~~~~~~l~  282 (315)
                      +..|..+..+++|+.|++++|.+..                                      +++.+|.+.+.+|.++.
T Consensus       322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~  401 (968)
T PLN00113        322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG  401 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence            4444444455555555554443321                                      33444455555555555


Q ss_pred             ccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          283 QLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       283 ~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      .+++|+.|++++|.+++.+|..+. ++.|+.|++
T Consensus       402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  435 (968)
T PLN00113        402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI  435 (968)
T ss_pred             CCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence            566666666666666656666555 566655543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.3e-35  Score=283.01  Aligned_cols=303  Identities=29%  Similarity=0.367  Sum_probs=191.1

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      ++|++|++++|.+.+..| ..+.++++|++|++++|.+.+ +|..+.+  ++  +|++|++ ++|.+.+..|..+.++++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~--~L~~L~L-~~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTN--LT--SLEFLTL-ASNQLVGQIPRELGQMKS  213 (968)
T ss_pred             CCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChhhhh--Cc--CCCeeec-cCCCCcCcCChHHcCcCC
Confidence            445555555555554445 345666666666666666554 5554443  34  6666666 666666666666666666


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      |++|++++|.+.+.+|..+ +.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++
T Consensus       214 L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L  291 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDL  291 (968)
T ss_pred             ccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEEC
Confidence            6666666666666666654 66677777777777666666666667777777777777666566666554 667777777


Q ss_pred             ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      ++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus       292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence            77776666666666777777777777776655555544 46777777777777766666666667777777777777666


Q ss_pred             ccccccccCCCCcEEEccCCccc--------------cccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-
Q 039327          242 EIPQSLSKCSSLEGLYLNNNSLS--------------DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-  306 (315)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~n~i~--------------~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-  306 (315)
                      .+|..+...++++.+++.+|.+.              .+++.+|.+.+.+|..+..+++|+.|++++|.+++.+|..+. 
T Consensus       371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  450 (968)
T PLN00113        371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD  450 (968)
T ss_pred             eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence            66666655556666666555432              245555556555666666666666666666666555555444 


Q ss_pred             ccccceec
Q 039327          307 PLYIKKVH  314 (315)
Q Consensus       307 ~~~L~~l~  314 (315)
                      +++|+.|+
T Consensus       451 l~~L~~L~  458 (968)
T PLN00113        451 MPSLQMLS  458 (968)
T ss_pred             CCCCcEEE
Confidence            55555544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=5.9e-33  Score=235.96  Aligned_cols=302  Identities=24%  Similarity=0.206  Sum_probs=227.7

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCc-cccEEEEeccCCCCccccccccccCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPN-FQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      +|+.|+|.+|.|. ++..+.++-+|.|++||||.|.++.+|..    .+|. .++++|++ ..|.++..-...|..+.+|
T Consensus       126 hl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~L-a~N~It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  126 HLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNL-ASNRITTLETGHFDSLNSL  199 (873)
T ss_pred             ceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEee-ccccccccccccccccchh
Confidence            4666777777665 34445677788889999998888887665    3444 48999999 9999998888889999999


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS  162 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  162 (315)
                      .+|.++.|+++ .+|...|+++++|+.|+|..|++.-.--.+|.++++|+.|.+..|.+. .+..+.+..+.+++.|++.
T Consensus       200 ~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  200 LTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             eeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecc
Confidence            99999999998 778877899999999999999987554567888889999999888887 6777777778888888888


Q ss_pred             cCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327          163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE  242 (315)
Q Consensus       163 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (315)
                      .|+++.....++-++..|+.|+++.|.+. .+..+.-+.++.|+.|+++.|+++...++.+..++.|++|+++.|.++-.
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l  356 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL  356 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence            88888666667778888888888888887 44433333588888888888888877777777777777777777776644


Q ss_pred             cccccccCCCCcEEEccCCcccc-----------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327          243 IPQSLSKCSSLEGLYLNNNSLSD-----------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF  305 (315)
Q Consensus       243 ~~~~~~~~~~L~~L~l~~n~i~~-----------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  305 (315)
                      ...++..+.+|+.||++.|.++-                 +.+-+|++...-..+|.+++.|++||+.+|.|...-|..|
T Consensus       357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence            44555566666666666664432                 4444555554445788888888888888888877777777


Q ss_pred             cccccceec
Q 039327          306 HPLYIKKVH  314 (315)
Q Consensus       306 ~~~~L~~l~  314 (315)
                      .--.|++|.
T Consensus       437 e~m~Lk~Lv  445 (873)
T KOG4194|consen  437 EPMELKELV  445 (873)
T ss_pred             ccchhhhhh
Confidence            722666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.97  E-value=4e-32  Score=230.95  Aligned_cols=302  Identities=23%  Similarity=0.236  Sum_probs=228.4

Q ss_pred             cceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCe
Q 039327            5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLED   84 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~   84 (315)
                      -+.|++++|.+. .+.+..|.++|+|+.+++.+|.++.+|.....  ..  +++.|++ ..|.+...-.+.++.++.|+.
T Consensus        80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~--sg--hl~~L~L-~~N~I~sv~se~L~~l~alrs  153 (873)
T KOG4194|consen   80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHE--SG--HLEKLDL-RHNLISSVTSEELSALPALRS  153 (873)
T ss_pred             eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccc--cc--ceeEEee-eccccccccHHHHHhHhhhhh
Confidence            367999999998 44446789999999999999999998876443  44  8999999 999999888888999999999


Q ss_pred             EEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC
Q 039327           85 VHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN  164 (315)
Q Consensus        85 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n  164 (315)
                      ||++.|.++ .++..-|..-.++++|+|.+|++++.....|..+.+|..|.++.|.++ .+|...+..+++|+.|++..|
T Consensus       154 lDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  154 LDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence            999999987 555433455578999999999999877788889999999999999998 899888887899999999998


Q ss_pred             cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccc
Q 039327          165 ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP  244 (315)
Q Consensus       165 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (315)
                      .|.-.--..|..+++|+.+.+.+|++. .+....|-.+..+++|++..|++...-.+.+..+..|++|+++.|.+....+
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            876221234677777777777777776 5555555456666666666666655555555556666666666666655555


Q ss_pred             cccccCCCCcEEEccCCcccc--------------------------------------ccCCCCccccCC---chhhcc
Q 039327          245 QSLSKCSSLEGLYLNNNSLSD--------------------------------------ITMPKNHLEGPI---PVEFCQ  283 (315)
Q Consensus       245 ~~~~~~~~L~~L~l~~n~i~~--------------------------------------l~l~~~~l~~~~---~~~l~~  283 (315)
                      ..+..+++|++|++++|+|+.                                      ++++.|.++..+   ..+|.+
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g  390 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG  390 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence            555556666666666665544                                      778888877544   355778


Q ss_pred             cCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          284 LYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       284 ~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      +++|+.|.+.||++....-..|. +..|+.|+|
T Consensus       391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             chhhhheeecCceeeecchhhhccCcccceecC
Confidence            89999999999998844444566 888888875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=1.2e-30  Score=224.07  Aligned_cols=297  Identities=28%  Similarity=0.337  Sum_probs=247.1

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccc--cccccccCCCCccccEEEEeccCCCCccccccccccC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ   79 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~   79 (315)
                      |.+|++|.++.|++....  ..++.+|.|+.+.+..|++..  +|.++++  +.  .|+.|++ +.|.+. +.|..+.+.
T Consensus        54 lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~--l~--dLt~lDL-ShNqL~-EvP~~LE~A  125 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFR--LK--DLTILDL-SHNQLR-EVPTNLEYA  125 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCCCCchhcc--cc--cceeeec-chhhhh-hcchhhhhh
Confidence            567888889888887333  367788899999999888865  8988876  66  8999999 888887 688888889


Q ss_pred             CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327           80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF  159 (315)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  159 (315)
                      +++-.|++|+|++. .+|..+|.+++-|-.|++++|++. ..|..+..+..|++|.+++|.+. .+.-.-...+.+|+.|
T Consensus       126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vL  202 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVL  202 (1255)
T ss_pred             cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhh
Confidence            99999999999997 889988899999999999999987 46777888999999999999876 3322222226678888


Q ss_pred             EeecCcCC-CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCc
Q 039327          160 NISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR  238 (315)
Q Consensus       160 ~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  238 (315)
                      .+++..-+ ..+|..+..+.+|..++++.|++. .+|..++ .+++|+.|++++|.+++.- .....+.+|++|+++.|+
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQ  279 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeee-ccHHHHhhhhhhccccch
Confidence            88887655 467888999999999999999998 9999998 5999999999999998743 344567889999999999


Q ss_pred             cccccccccccCCCCcEEEccCCcccc---------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCC
Q 039327          239 FIGEIPQSLSKCSSLEGLYLNNNSLSD---------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS  303 (315)
Q Consensus       239 ~~~~~~~~~~~~~~L~~L~l~~n~i~~---------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  303 (315)
                      ++ .+|.+++.+++|+.|.+.+|++.-               +...+|.+. .+|+.+|+|++|+.|.++.|++- .+|+
T Consensus       280 Lt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPe  356 (1255)
T KOG0444|consen  280 LT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPE  356 (1255)
T ss_pred             hc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echh
Confidence            98 889999999999999998886432               445566665 78999999999999999999987 8999


Q ss_pred             Ccc-ccccceecC
Q 039327          304 CFH-PLYIKKVHL  315 (315)
Q Consensus       304 ~~~-~~~L~~l~l  315 (315)
                      .++ ++-|++||+
T Consensus       357 aIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  357 AIHLLPDLKVLDL  369 (1255)
T ss_pred             hhhhcCCcceeec
Confidence            999 899999875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=9.7e-28  Score=206.38  Aligned_cols=298  Identities=20%  Similarity=0.279  Sum_probs=244.7

Q ss_pred             CCccceEEeecCccc-ccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            2 LTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      ++-++-+++++|.++ +.+| .....|+.++-|.|.+.++..+|..++.  +.  +|++|.+ ..|.+. .+-..++.++
T Consensus         6 LpFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~vPeEL~~--lq--kLEHLs~-~HN~L~-~vhGELs~Lp   78 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQVPEELSR--LQ--KLEHLSM-AHNQLI-SVHGELSDLP   78 (1255)
T ss_pred             cceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhhChHHHHH--Hh--hhhhhhh-hhhhhH-hhhhhhccch
Confidence            566778899999998 5566 5788999999999999999889998776  55  8999999 877776 3455678899


Q ss_pred             CCCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327           81 DLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF  159 (315)
Q Consensus        81 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  159 (315)
                      .|+.+++..|++.. -+|..+ -.+..|..|++++|++. ..|..+..-+++..|++++|.+. .+|..++..+..|-.|
T Consensus        79 ~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhHHHhhhccccccCCCCchh-cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            99999999998854 567777 48899999999999987 68888999999999999999998 9999998888889999


Q ss_pred             EeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCC-CcccccccCCCCCCEEEcCCCc
Q 039327          160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK-GHMFCRNFNLANLRQLQLEDNR  238 (315)
Q Consensus       160 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~  238 (315)
                      |++.|++. .+|+..+.+.+|++|.+++|.+. .+.....-.+.+|++|.+++.+-+ ...|.++..+.+|..+|++.|.
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            99999998 78888999999999999999887 433222224667788888887654 4577888889999999999999


Q ss_pred             cccccccccccCCCCcEEEccCCcccc-------------ccCCCCccccCCchhhcccCCCCEEecccCccC-CCCCCC
Q 039327          239 FIGEIPQSLSKCSSLEGLYLNNNSLSD-------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS-GSLPSC  304 (315)
Q Consensus       239 ~~~~~~~~~~~~~~L~~L~l~~n~i~~-------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~  304 (315)
                      +. .+|+.+..+++|+.|++++|.|++             ++++.|+++ .+|.+++++++|+.|.+.+|.++ .-+|+.
T Consensus       234 Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  234 LP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             CC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence            88 889999999999999999998887             667778877 67888888888888888887653 245666


Q ss_pred             cc-cccccee
Q 039327          305 FH-PLYIKKV  313 (315)
Q Consensus       305 ~~-~~~L~~l  313 (315)
                      ++ +..|+++
T Consensus       312 IGKL~~Levf  321 (1255)
T KOG0444|consen  312 IGKLIQLEVF  321 (1255)
T ss_pred             hhhhhhhHHH
Confidence            66 6666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=1.7e-27  Score=194.56  Aligned_cols=245  Identities=24%  Similarity=0.297  Sum_probs=160.7

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +..++++++..|.+. ..| .++..+..++.++.+.|.+..+|..+..  .+  .+..++. +.+.+. .+++.+..+..
T Consensus        67 L~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls~lp~~i~s--~~--~l~~l~~-s~n~~~-el~~~i~~~~~  138 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLSELPEQIGS--LI--SLVKLDC-SSNELK-ELPDSIGRLLD  138 (565)
T ss_pred             ccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHhhccHHHhh--hh--hhhhhhc-ccccee-ecCchHHHHhh
Confidence            445566666666665 444 2556666666666666666666666554  44  5666666 555544 45566666666


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      ++.++-.+|++. ..|..+ .++.++..+++.+|++....+. .-.|+.|++++...|.++ .+|+.++. +..|..|++
T Consensus       139 l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL  213 (565)
T KOG0472|consen  139 LEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGG-LESLELLYL  213 (565)
T ss_pred             hhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcc-hhhhHHHHh
Confidence            666666666665 455554 5666777777777766643333 333777777777777776 77777775 777777777


Q ss_pred             ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      ..|.+. .+| .|..|..|.+++++.|.+. .+|.....+++++.+||++.|++.+ .|..+..+.+|+.||+++|.++ 
T Consensus       214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-  288 (565)
T KOG0472|consen  214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-  288 (565)
T ss_pred             hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-
Confidence            777776 566 5677777777777777776 6777766677777777777777765 3555556677777777777776 


Q ss_pred             ccccccccCCCCcEEEccCCcccc
Q 039327          242 EIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      ..|..++++ +|+.|.+.+|.+++
T Consensus       289 ~Lp~sLgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  289 SLPYSLGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             cCCcccccc-eeeehhhcCCchHH
Confidence            556667776 67777777775554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=5.6e-26  Score=185.76  Aligned_cols=295  Identities=22%  Similarity=0.298  Sum_probs=185.8

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      ..+..++++.|.+. ..+ +.+..+-.++.++..+|+++++|.+++.    +.++..+++ .++.+....|+ ..+++.|
T Consensus       114 ~~l~~l~~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~slp~~~~~----~~~l~~l~~-~~n~l~~l~~~-~i~m~~L  185 (565)
T KOG0472|consen  114 ISLVKLDCSSNELK-ELP-DSIGRLLDLEDLDATNNQISSLPEDMVN----LSKLSKLDL-EGNKLKALPEN-HIAMKRL  185 (565)
T ss_pred             hhhhhhhcccccee-ecC-chHHHHhhhhhhhccccccccCchHHHH----HHHHHHhhc-cccchhhCCHH-HHHHHHH
Confidence            45667777777776 455 3677777777777777777777776543    336667777 66666633333 3336666


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-----------------------CCCcCCCCccEEEcccC
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-----------------------LPIHPHRRLRFLDVSNN  139 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------------------~~l~~~~~L~~L~l~~~  139 (315)
                      ++||...|.++ .+|+.+ +.+.+|.-|++.+|++. ..|                       ...++++++.+|++++|
T Consensus       186 ~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  186 KHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             Hhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence            67776666554 556554 56666666666666554 222                       22335566777777777


Q ss_pred             cCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhh---------------------
Q 039327          140 NFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERL---------------------  198 (315)
Q Consensus       140 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---------------------  198 (315)
                      .+. ++|.+++- +.+|++||+++|.++ ..|..++++ +|+.|-+.+|.+. .+...+                     
T Consensus       263 klk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dgl  337 (565)
T KOG0472|consen  263 KLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGL  337 (565)
T ss_pred             ccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCC
Confidence            776 67777665 666777777777776 566667776 6776766666543 100000                     


Q ss_pred             -----------------c---cCCCc--------------------------ccEEEccCCCCC----------------
Q 039327          199 -----------------A---VGCVN--------------------------LEFLALSNNNLK----------------  216 (315)
Q Consensus       199 -----------------~---~~~~~--------------------------L~~L~l~~n~~~----------------  216 (315)
                                       +   ....+                          .+..++++|++.                
T Consensus       338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l  417 (565)
T KOG0472|consen  338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL  417 (565)
T ss_pred             CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence                             0   00001                          233444444322                


Q ss_pred             -------CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc-------------ccCCCCccccC
Q 039327          217 -------GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD-------------ITMPKNHLEGP  276 (315)
Q Consensus       217 -------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~-------------l~l~~~~l~~~  276 (315)
                             +++|..+..++++..|++++|.+. .+|..++....|+.++++.|++..             +-.++++++..
T Consensus       418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             HhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccccc
Confidence                   223344557788888999888776 778888888889999999987665             22344555533


Q ss_pred             CchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          277 IPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       277 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      -+..+.+|.+|..||+.+|.+. .+|..++ |.+|+.|++
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL  535 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLEL  535 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEe
Confidence            3445778888888888888887 6777777 888887764

>PLN03210 Resistant to P

Probab=99.89  E-value=2e-21  Score=189.25  Aligned_cols=295  Identities=21%  Similarity=0.212  Sum_probs=180.4

Q ss_pred             CCccceEEeecCccc------ccCCCcccCCCc-ccceeecccccccccccccccCCCCccccEEEEeccCCCCcccccc
Q 039327            2 LTSIEELYLSNNHFQ------IPISLEPLFNHS-RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPK   74 (315)
Q Consensus         2 l~~L~~l~l~~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~   74 (315)
                      |++|+.|.+.++...      ..+| ..+..+| +|+.|.+.++++..+|..+     ...+|+.|++ .++.+. .++.
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f-----~~~~L~~L~L-~~s~l~-~L~~  628 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF-----RPENLVKLQM-QGSKLE-KLWD  628 (1153)
T ss_pred             CccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC-----CccCCcEEEC-cCcccc-cccc
Confidence            567777777654321      2233 2344443 4777777777666666553     1226777777 666554 3555


Q ss_pred             ccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCC
Q 039327           75 FLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP  154 (315)
Q Consensus        75 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  154 (315)
                      .+..+++|+.|+++++.....+|.  +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|...  .+.
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~  704 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK  704 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence            556666777777766554345554  3566677777776665545566666666667777776654333555543  255


Q ss_pred             CceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhh-----------------------------ccCCCcc
Q 039327          155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERL-----------------------------AVGCVNL  205 (315)
Q Consensus       155 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----------------------------~~~~~~L  205 (315)
                      +|+.|++.+|.....+|..   ..+|++|++++|.+. .+|...                             +..+++|
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence            6666666665433333321   234555555555543 333211                             1124567


Q ss_pred             cEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-----------cccccCCCCccc
Q 039327          206 EFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-----------LSDITMPKNHLE  274 (315)
Q Consensus       206 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-----------i~~l~l~~~~l~  274 (315)
                      +.|++++|......|..+..+++|+.|++++|...+.+|... .+++|+.|++++|.           +..++++++.+.
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE  859 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence            788888877666677778888888888888876444556544 57788888887752           334667777776


Q ss_pred             cCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327          275 GPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVH  314 (315)
Q Consensus       275 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~  314 (315)
                       .+|.++..+++|+.|++++|.--..+|..+. +++|+.++
T Consensus       860 -~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~  899 (1153)
T PLN03210        860 -EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD  899 (1153)
T ss_pred             -cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence             6888899999999999999643335666655 66666654

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.86  E-value=1.5e-20  Score=183.15  Aligned_cols=278  Identities=18%  Similarity=0.177  Sum_probs=207.6

Q ss_pred             CCCcccCCCcccceeeccccccc-------ccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCce
Q 039327           19 ISLEPLFNHSRLKRLWAYNNEIK-------AEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK   91 (315)
Q Consensus        19 ~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   91 (315)
                      +...+|.+|++|+.|.+..+...       .+|..+..  +|. +|+.|++ .++.+. .+|..+ ...+|+.|+++++.
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~--lp~-~Lr~L~~-~~~~l~-~lP~~f-~~~~L~~L~L~~s~  622 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY--LPP-KLRLLRW-DKYPLR-CMPSNF-RPENLVKLQMQGSK  622 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhh--cCc-ccEEEEe-cCCCCC-CCCCcC-CccCCcEEECcCcc
Confidence            33457889999999999765321       15555443  332 7999999 877765 567665 57899999999999


Q ss_pred             ecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCC
Q 039327           92 MNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIP  171 (315)
Q Consensus        92 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  171 (315)
                      +. .++..+ ..+++|++++++++.....+| .+..+++|++|++.+|.....+|..+.. +++|+.|++.+|.....+|
T Consensus       623 l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~-L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        623 LE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQY-LNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             cc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhc-cCCCCEEeCCCCCCcCccC
Confidence            87 566664 789999999999876555555 4788999999999998755588888776 8899999999976555677


Q ss_pred             ccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccc-----------------------------c
Q 039327          172 SSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFC-----------------------------R  222 (315)
Q Consensus       172 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----------------------------~  222 (315)
                      ..+ ++++|+.|++++|.....+|..    ..+|+.|++++|.+...+..                             .
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh
Confidence            655 7899999999998655455532    45788999998886543211                             0


Q ss_pred             ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-------------cccccCCCCccccCCchhhcccCCCCE
Q 039327          223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-------------LSDITMPKNHLEGPIPVEFCQLYSLHI  289 (315)
Q Consensus       223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~l~l~~~~l~~~~~~~l~~~~~L~~  289 (315)
                      ...+++|+.|++++|.....+|..++++++|+.|++++|.             +..+++++|.....+|..   .++++.
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~  850 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISD  850 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCE
Confidence            1124578899999988777889999999999999999863             233556666544445532   357889


Q ss_pred             EecccCccCCCCCCCcc-ccccceecC
Q 039327          290 LDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       290 L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      |++++|.++ .+|..+. +++|+.|++
T Consensus       851 L~Ls~n~i~-~iP~si~~l~~L~~L~L  876 (1153)
T PLN03210        851 LNLSRTGIE-EVPWWIEKFSNLSFLDM  876 (1153)
T ss_pred             eECCCCCCc-cChHHHhcCCCCCEEEC
Confidence            999999998 7887777 888888764

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=2.9e-20  Score=169.98  Aligned_cols=253  Identities=21%  Similarity=0.284  Sum_probs=158.3

Q ss_pred             cceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCe
Q 039327            5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLED   84 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~   84 (315)
                      -..|+++++.++ .+|. .+.  ++|+.|++++|+++.+|..     .+  +|++|++ ++|.++ .+|..   .++|+.
T Consensus       203 ~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt~LP~l-----p~--~Lk~LdL-s~N~Lt-sLP~l---p~sL~~  266 (788)
T PRK15387        203 NAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLPAL-----PP--ELRTLEV-SGNQLT-SLPVL---PPGLLE  266 (788)
T ss_pred             CcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCCCCCCC-----CC--CCcEEEe-cCCccC-cccCc---ccccce
Confidence            456888888887 6773 343  4788888888888877653     33  7888888 777777 34432   357777


Q ss_pred             EEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC
Q 039327           85 VHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN  164 (315)
Q Consensus        85 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n  164 (315)
                      |++++|.++ .+|.    ..++|+.|++++|++.. +|.   .+++|++|++++|.+. .+|..    ..+|+.|++.+|
T Consensus       267 L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N  332 (788)
T PRK15387        267 LSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNN  332 (788)
T ss_pred             eeccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccC
Confidence            888777765 3443    12456777777777663 333   2356777777777766 45431    335666666666


Q ss_pred             cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccc
Q 039327          165 ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP  244 (315)
Q Consensus       165 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (315)
                      .++ .+|..   ..+|+.|++++|.+. .+|..    .++|+.|++++|.+... |..   +.+|+.|++++|.++ .+|
T Consensus       333 ~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt-~LP  398 (788)
T PRK15387        333 QLT-SLPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLT-SLP  398 (788)
T ss_pred             ccc-ccccc---ccccceEecCCCccC-CCCCC----CcccceehhhccccccC-ccc---ccccceEEecCCccc-CCC
Confidence            665 34431   135666666666666 44431    34556666666665542 221   245666666666665 233


Q ss_pred             cccccCCCCcEEEccCCcccc----------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327          245 QSLSKCSSLEGLYLNNNSLSD----------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF  305 (315)
Q Consensus       245 ~~~~~~~~L~~L~l~~n~i~~----------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  305 (315)
                      ..   .++|+.|++++|.+..          +++++|.++ .+|..++++++|+.|++++|.+++..+..+
T Consensus       399 ~l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        399 VL---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             Cc---ccCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            22   2356666666665554          344555555 688889999999999999999998766654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=2.3e-22  Score=164.33  Aligned_cols=230  Identities=21%  Similarity=0.167  Sum_probs=172.3

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      .-.+++|..|.|+ .+|..+|+.+++|+.|||+.|+|+.+. .++.+  ++  .+..|-+-++|+|++.--..|.++..+
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G--L~--~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG--LA--SLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhh--hH--hhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            4467889999997 788889999999999999999998844 44443  45  566666614488886555677788888


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCc----------------------
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN----------------------  140 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----------------------  140 (315)
                      +.|.+.-|++. .++...+..++++..|.+.+|.+....-.++..+..++.+.+..|.                      
T Consensus       143 qrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  143 QRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            88888888776 3444446888888888888876654333345555555555554443                      


Q ss_pred             ---------------------------------------CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327          141 ---------------------------------------FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR  181 (315)
Q Consensus       141 ---------------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  181 (315)
                                                             ..+..|...+..+++|++|++++|.++..-+.+|.....++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence                                                   11233444455588999999999999977788888999999


Q ss_pred             EEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       182 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +|.+.+|++. .+...+|..+..|++|++.+|+++...|.+|.....|.+|++-+|.+.
T Consensus       302 eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  302 ELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9999999988 778888888999999999999999888888888888999988887653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=5.5e-20  Score=168.97  Aligned_cols=250  Identities=20%  Similarity=0.304  Sum_probs=188.9

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      +.+.|+++++.++ .+|. .+  .++|+.|++++|.++.+|..+..      +|++|++ ++|.+. .+|..+.  .+|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~LtsLP~~l~~------nL~~L~L-s~N~Lt-sLP~~l~--~~L~  244 (754)
T PRK15370        179 NKTELRLKILGLT-TIPA-CI--PEQITTLILDNNELKSLPENLQG------NIKTLYA-NSNQLT-SIPATLP--DTIQ  244 (754)
T ss_pred             CceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCCcCChhhcc------CCCEEEC-CCCccc-cCChhhh--cccc
Confidence            4678899998887 5663 33  25799999999999998877543      8999999 888887 4665443  4799


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST  163 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  163 (315)
                      .|++++|.+. .+|..+   ..+|++|++++|++.. +|..+.  ++|+.|++++|.++ .+|..+.   ++|+.|++.+
T Consensus       245 ~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~  313 (754)
T PRK15370        245 EMELSINRIT-ELPERL---PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQS  313 (754)
T ss_pred             EEECcCCccC-cCChhH---hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcC
Confidence            9999999987 778765   3589999999999874 565543  58999999999988 6776543   4788899999


Q ss_pred             CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327          164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI  243 (315)
Q Consensus       164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (315)
                      |.++ .+|..+  .++|+.|++++|.+. .+|..+   +++|+.|++++|.+... |..+  ++.|+.|++++|.++ .+
T Consensus       314 N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt-~L  382 (754)
T PRK15370        314 NSLT-ALPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT-NL  382 (754)
T ss_pred             Cccc-cCCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC-CC
Confidence            9888 456543  368999999999988 677654   46899999999998753 4433  468999999999988 55


Q ss_pred             ccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327          244 PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       244 ~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                      |..+.  +.|+.|++++|++..+.       ..+|..+..++.+..+++.+|.++
T Consensus       383 P~~l~--~sL~~LdLs~N~L~~LP-------~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        383 PENLP--AALQIMQASRNNLVRLP-------ESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CHhHH--HHHHHHhhccCCcccCc-------hhHHHHhhcCCCccEEEeeCCCcc
Confidence            65543  36888888888776322       123444555688899999999885

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=2.6e-22  Score=179.66  Aligned_cols=281  Identities=26%  Similarity=0.332  Sum_probs=152.2

Q ss_pred             EEeecCcccccCCCcccCCCcccceeecccccccccccc----------------cccCCCCccccEEEEeccCCCCccc
Q 039327            8 LYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE----------------SHSLTAPNFQLQSLLLSSGYGDGVT   71 (315)
Q Consensus         8 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~~~~~~~L~~L~l~~~~~~~~~   71 (315)
                      +++++|.+.  .  ..+.++++|+.+..++|++..+...                ......|. +++++++ +.+.+. .
T Consensus       183 ldLr~N~~~--~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~-nl~~~di-s~n~l~-~  255 (1081)
T KOG0618|consen  183 LDLRYNEME--V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPL-NLQYLDI-SHNNLS-N  255 (1081)
T ss_pred             eecccchhh--h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccc-cceeeec-chhhhh-c
Confidence            777777765  1  1455666666666666655442211                00001111 5666666 555554 3


Q ss_pred             cccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhh
Q 039327           72 FPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGD  151 (315)
Q Consensus        72 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  151 (315)
                      +|+++..+.+|+.+...+|.+. .+|..+ ...++|+.|...+|.+. -+|......++|++|++..|.+. .+|..++.
T Consensus       256 lp~wi~~~~nle~l~~n~N~l~-~lp~ri-~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~  331 (1081)
T KOG0618|consen  256 LPEWIGACANLEALNANHNRLV-ALPLRI-SRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA  331 (1081)
T ss_pred             chHHHHhcccceEecccchhHH-hhHHHH-hhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence            4566666666666666666663 555554 34556666666666554 34555666777777777777775 66664443


Q ss_pred             cCCC-ceEEEeecCcCCCCCCc-cccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCC
Q 039327          152 ILPS-LFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANL  229 (315)
Q Consensus       152 ~~~~-L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  229 (315)
                      .... +..++.+.+.+. ..|. .=..++.|+.|++.+|.+++..-..+. ...+|+.|++++|++..++...+.++..|
T Consensus       332 v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~L  409 (1081)
T KOG0618|consen  332 VLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEEL  409 (1081)
T ss_pred             hhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHh
Confidence            2221 334444444333 2221 112234466666666666644333322 46666777777776666666666666667


Q ss_pred             CEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC-CCCcccc
Q 039327          230 RQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL-PSCFHPL  308 (315)
Q Consensus       230 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~  308 (315)
                      ++|+++||.++ .+|+.+..++.|++|...+|++.           .+| .+..++.|+.+|++-|+++... |.....+
T Consensus       410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-----------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p  476 (1081)
T KOG0618|consen  410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-----------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP  476 (1081)
T ss_pred             HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-----------ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence            77777777666 55566666666666666666555           234 4555555555555555554222 2222235


Q ss_pred             ccceec
Q 039327          309 YIKKVH  314 (315)
Q Consensus       309 ~L~~l~  314 (315)
                      .|++||
T Consensus       477 ~LkyLd  482 (1081)
T KOG0618|consen  477 NLKYLD  482 (1081)
T ss_pred             ccceee
Confidence            555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=1.5e-22  Score=181.10  Aligned_cols=295  Identities=25%  Similarity=0.278  Sum_probs=187.1

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      +|+.|++++|.+. ..|. .+..+++|+.|++++|.+..+|.++.+  ..  +|+++.+ .++... ..|..+..+.+|+
T Consensus        46 ~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~vp~s~~~--~~--~l~~lnL-~~n~l~-~lP~~~~~lknl~  117 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRSVPSSCSN--MR--NLQYLNL-KNNRLQ-SLPASISELKNLQ  117 (1081)
T ss_pred             eeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhhCchhhhh--hh--cchhhee-ccchhh-cCchhHHhhhccc
Confidence            5888888888886 6664 677788888888888888777765443  33  7777777 665554 5677777777777


Q ss_pred             eEEecCceecccCChhhhhcc----------------------------------------cccce-eEeecCCCcCc--
Q 039327           84 DVHLSHIKMNGKFPNWLLENN----------------------------------------AKLET-LFLINDSIGGP--  120 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~----------------------------------------~~L~~-L~l~~~~~~~~--  120 (315)
                      .|+++.|.+. .+|..+ ..+                                        -.+++ +++++|.+...  
T Consensus       118 ~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl  195 (1081)
T KOG0618|consen  118 YLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL  195 (1081)
T ss_pred             ccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence            7777776554 222111 000                                        01111 33333322200  


Q ss_pred             -------------------------------------CcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327          121 -------------------------------------FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST  163 (315)
Q Consensus       121 -------------------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  163 (315)
                                                           ....-....++++++++.+.++ .+|.-+.. +++|+.++...
T Consensus       196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~  273 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANH  273 (1081)
T ss_pred             hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHh-cccceEecccc
Confidence                                                 0000111246777777777776 77765555 78888888888


Q ss_pred             CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc---------------------
Q 039327          164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR---------------------  222 (315)
Q Consensus       164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---------------------  222 (315)
                      |.++ .+|..+....+|+.+++..|.+. .+|.... ...+|++|++..|.+...+...                     
T Consensus       274 N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  274 NRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             hhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            8776 55555555566666666666665 5554443 3556666666666554322111                     


Q ss_pred             ----ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhccc
Q 039327          223 ----NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQL  284 (315)
Q Consensus       223 ----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~  284 (315)
                          =...+.|+.|.+.+|.+++..-+.+.+.+.|+.|++++|++.+              +.++||+++ .+|+.+..+
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence                0123456667777777776665666677777777777776554              667777776 678888999


Q ss_pred             CCCCEEecccCccCCCCCCCccccccceecC
Q 039327          285 YSLHILDISDNNISGSLPSCFHPLYIKKVHL  315 (315)
Q Consensus       285 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l  315 (315)
                      +.|+.|...+|++. ..|+...++.|+.+|+
T Consensus       430 ~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLL-SFPELAQLPQLKVLDL  459 (1081)
T ss_pred             hhhHHHhhcCCcee-echhhhhcCcceEEec
Confidence            99999999999998 7776656888888875

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=4.7e-19  Score=162.92  Aligned_cols=238  Identities=19%  Similarity=0.280  Sum_probs=184.3

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      +...|+++++.++.+|..+..      .++.|++ ++|.++ .+|..+.  .+|+.|++++|.++ .+|..+   .++|+
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip~------~L~~L~L-s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~  244 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIPE------QITTLIL-DNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQ  244 (754)
T ss_pred             CceEEEeCCCCcCcCCccccc------CCcEEEe-cCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hcccc
Confidence            567899999999998887544      8999999 888888 4666544  58999999999987 677654   35799


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN  188 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  188 (315)
                      +|++++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.   ++|+.|++++|.++ .+|..+.  ++|+.|++++|
T Consensus       245 ~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N  314 (754)
T PRK15370        245 EMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN  314 (754)
T ss_pred             EEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC
Confidence            9999999987 4565543  57999999999998 7887553   58999999999988 4565443  47899999999


Q ss_pred             cccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccC
Q 039327          189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITM  268 (315)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l  268 (315)
                      .+. .+|...   .++|+.|++++|.+++. |..+  +++|+.|++++|.++ .+|..+  .++|+.|++++|.+.    
T Consensus       315 ~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt----  380 (754)
T PRK15370        315 SLT-ALPETL---PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT----  380 (754)
T ss_pred             ccc-cCCccc---cccceeccccCCccccC-Chhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC----
Confidence            998 676554   46899999999998874 4433  478999999999988 566554  368999999999877    


Q ss_pred             CCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-----ccccceec
Q 039327          269 PKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-----PLYIKKVH  314 (315)
Q Consensus       269 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~L~~l~  314 (315)
                             .+|..+.  ++|+.|++++|++. .+|..+.     ++.+..++
T Consensus       381 -------~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        381 -------NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             -------CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence                   3555543  26889999999998 6776543     35555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=1.2e-18  Score=159.47  Aligned_cols=241  Identities=22%  Similarity=0.246  Sum_probs=188.1

Q ss_pred             cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      ..-..|+++.+.++.+|..+..      +++.|++ ..|.++. +|.   ..++|++|++++|+++ .+|.    ..++|
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~~------~L~~L~L-~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL  264 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLPA------HITTLVI-PDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGL  264 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchhc------CCCEEEc-cCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----ccccc
Confidence            3466799999999999987543      8999999 8888884 564   3588999999999998 5564    24789


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      ++|++++|.+.. +|..   +..|+.|++++|.++ .+|.    .+++|+.|++++|.++ .+|..   ..+|+.|++++
T Consensus       265 ~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~  331 (788)
T PRK15387        265 LELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYN  331 (788)
T ss_pred             ceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccc-cCCCC---ccccccccccc
Confidence            999999998874 4432   367889999999998 6775    2578999999999998 45543   24588899999


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD--  265 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--  265 (315)
                      |.+. .+|.    ...+|+.|++++|.+.+. |.   .+++|+.|++++|.+. .+|..   ..+|+.|++++|.+..  
T Consensus       332 N~L~-~LP~----lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP  398 (788)
T PRK15387        332 NQLT-SLPT----LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP  398 (788)
T ss_pred             Cccc-cccc----cccccceEecCCCccCCC-CC---CCcccceehhhccccc-cCccc---ccccceEEecCCcccCCC
Confidence            9997 6664    246899999999999874 33   2467889999999988 45543   3579999999998765  


Q ss_pred             --------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          266 --------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       266 --------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                              +++++|.++. +|...   .+|+.|++++|+++ .+|+.+. ++.|+.|++
T Consensus       399 ~l~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        399 VLPSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             CcccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence                    5678888874 66533   35788999999998 7888887 888888875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=3.3e-20  Score=157.94  Aligned_cols=278  Identities=21%  Similarity=0.194  Sum_probs=159.8

Q ss_pred             eEEeecCcccccCCCcccCCCcccceeecccccccc-----cccccccCCCCccccEEEEeccCCCCc------cccccc
Q 039327            7 ELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDG------VTFPKF   75 (315)
Q Consensus         7 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~   75 (315)
                      .|+|.++.+++......+..++.|+.++++++.++.     ++..+..  .+  .++++++ +.+.+.      ..++..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~--~~--~l~~l~l-~~~~~~~~~~~~~~~~~~   76 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP--QP--SLKELCL-SLNETGRIPRGLQSLLQG   76 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh--CC--CceEEec-cccccCCcchHHHHHHHH
Confidence            467777777633332455667778899998888754     3333332  33  6888888 666655      123445


Q ss_pred             cccCCCCCeEEecCceecccCChhhhhccc---ccceeEeecCCCcC----cCcCCCcCC-CCccEEEcccCcCCCCCch
Q 039327           76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNA---KLETLFLINDSIGG----PFRLPIHPH-RRLRFLDVSNNNFQGHIPV  147 (315)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~l~~~~~~~~~~~  147 (315)
                      +..+++|+.|++++|.+.+..+..+ ..+.   +|++|++++|.+.+    .+...+..+ ++|++|++++|.+++....
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            6667888888888887765444432 3333   38888888887663    222334455 7778888888777632221


Q ss_pred             hh---hhcCCCceEEEeecCcCCCC----CCccccCCCCCcEEEccCccccCcCch---hhccCCCcccEEEccCCCCCC
Q 039327          148 EI---GDILPSLFSFNISTNALHGS----IPSSFGNMNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFLALSNNNLKG  217 (315)
Q Consensus       148 ~~---~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~  217 (315)
                      .+   +..+.+|++|++.+|.+++.    ++..+...++|+.|++++|.+.+....   .....+++|+.|++++|.+.+
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            11   12245777888877776621    222344456777777777766522211   112246667777777777664


Q ss_pred             ccccccc-----CCCCCCEEEcCCCcccc----ccccccccCCCCcEEEccCCccccccCCCCccccCCchhhccc-CCC
Q 039327          218 HMFCRNF-----NLANLRQLQLEDNRFIG----EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL-YSL  287 (315)
Q Consensus       218 ~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~-~~L  287 (315)
                      .....+.     ..+.|++|++++|.+++    .+...+..+++|+++++++|.+.+-.      ...+...+... +.+
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~------~~~~~~~~~~~~~~~  309 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG------AQLLAESLLEPGNEL  309 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH------HHHHHHHHhhcCCch
Confidence            2221111     23567777777777652    12234445566777777777665311      00122333333 466


Q ss_pred             CEEecccCc
Q 039327          288 HILDISDNN  296 (315)
Q Consensus       288 ~~L~l~~n~  296 (315)
                      +++++.+|.
T Consensus       310 ~~~~~~~~~  318 (319)
T cd00116         310 ESLWVKDDS  318 (319)
T ss_pred             hhcccCCCC
Confidence            777766664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.77  E-value=1.1e-20  Score=154.52  Aligned_cols=263  Identities=21%  Similarity=0.229  Sum_probs=178.9

Q ss_pred             eecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEe
Q 039327           33 LWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL  112 (315)
Q Consensus        33 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  112 (315)
                      ++.++-.++.+|.++..      ....|++ ..|.|+..-+.+|+.+++|+.||++.|.++..-|.. |.-++++..|-+
T Consensus        51 VdCr~~GL~eVP~~LP~------~tveirL-dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvl  122 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPP------ETVEIRL-DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVL  122 (498)
T ss_pred             EEccCCCcccCcccCCC------cceEEEe-ccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHh
Confidence            44455566667777444      7778888 788888666677888888888888888887555665 466777766666


Q ss_pred             ec-CCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcccc
Q 039327          113 IN-DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT  191 (315)
Q Consensus       113 ~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  191 (315)
                      .+ |+|+..-...|.++.+++.|.+.-|.+. .++...++.++++..|.+.+|.+...--..|..+..++.+.+..|.+.
T Consensus       123 yg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  123 YGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             hcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence            55 7777655567778888888888777776 666666666778888888877766333335666677777777666522


Q ss_pred             Cc------------CchhhccCCC----------------------cccEE--Ec-cCCCCCCcc-cccccCCCCCCEEE
Q 039327          192 GE------------IPERLAVGCV----------------------NLEFL--AL-SNNNLKGHM-FCRNFNLANLRQLQ  233 (315)
Q Consensus       192 ~~------------~~~~~~~~~~----------------------~L~~L--~l-~~n~~~~~~-~~~~~~~~~L~~L~  233 (315)
                      ..            .+.. +....                      .++.+  .+ +.+...... ...|..+++|+.++
T Consensus       202 cdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln  280 (498)
T KOG4237|consen  202 CDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN  280 (498)
T ss_pred             cccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence            00            0000 00000                      01111  01 111122222 23467888999999


Q ss_pred             cCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccce
Q 039327          234 LEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKK  312 (315)
Q Consensus       234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~  312 (315)
                      +++|+++..-+.+|....++++|.+..|+|..+.          ..+|.++..|+.|++.+|+|+..-|..|. ..+|..
T Consensus       281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~----------~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS----------SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             cCCCccchhhhhhhcchhhhhhhhcCcchHHHHH----------HHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            9999999888888989999999999999887544          46788888888999999999888888888 777777


Q ss_pred             ecC
Q 039327          313 VHL  315 (315)
Q Consensus       313 l~l  315 (315)
                      |++
T Consensus       351 l~l  353 (498)
T KOG4237|consen  351 LNL  353 (498)
T ss_pred             eeh
Confidence            654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=6.5e-20  Score=156.12  Aligned_cols=271  Identities=23%  Similarity=0.225  Sum_probs=184.7

Q ss_pred             eeecccccccc--cccccccCCCCccccEEEEeccCCCCccc----cccccccCCCCCeEEecCceecc------cCChh
Q 039327           32 RLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVT----FPKFLYHQHDLEDVHLSHIKMNG------KFPNW   99 (315)
Q Consensus        32 ~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~------~~~~~   99 (315)
                      .|+|.++.+++  ....+..  +.  .++.|++ +++.+++.    ++..+...+.+++++++++.+..      .++..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~--l~--~L~~l~l-~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~   76 (319)
T cd00116           2 QLSLKGELLKTERATELLPK--LL--CLQVLRL-EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG   76 (319)
T ss_pred             ccccccCcccccchHHHHHH--Hh--hccEEee-cCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH
Confidence            45666666653  3222222  44  6999999 88887543    45566778889999999987762      12233


Q ss_pred             hhhcccccceeEeecCCCcCcCcCCCcCCC---CccEEEcccCcCCCC----CchhhhhcC-CCceEEEeecCcCCCC--
Q 039327          100 LLENNAKLETLFLINDSIGGPFRLPIHPHR---RLRFLDVSNNNFQGH----IPVEIGDIL-PSLFSFNISTNALHGS--  169 (315)
Q Consensus       100 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~----~~~~~~~~~-~~L~~L~l~~n~~~~~--  169 (315)
                       +..+++|++|++++|.+.+..+..+..+.   +|++|++++|.+.+.    +...+.. + ++|+.|++.+|.+++.  
T Consensus        77 -l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          77 -LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-LPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             -HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHh-CCCCceEEEcCCCcCCchHH
Confidence             46788999999999988754444444444   499999999988632    1222333 4 7999999999998732  


Q ss_pred             --CCccccCCCCCcEEEccCccccCcCchhh---ccCCCcccEEEccCCCCCCc----ccccccCCCCCCEEEcCCCccc
Q 039327          170 --IPSSFGNMNFLRILDLSSNQLTGEIPERL---AVGCVNLEFLALSNNNLKGH----MFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       170 --~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                        ++..+..+++|++|++++|.+.+.....+   ....++|+.|++++|.+.+.    ....+..+++|++|++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence              23356677899999999998874322221   12457999999999998753    2344567899999999999988


Q ss_pred             cccccccc-c----CCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC----CCCcc-c-cc
Q 039327          241 GEIPQSLS-K----CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL----PSCFH-P-LY  309 (315)
Q Consensus       241 ~~~~~~~~-~----~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~-~-~~  309 (315)
                      +.....+. .    .+.|++|++.+|.+.+..      ...+...+..+++|+.+++++|.+++..    ...+. . +.
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~------~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~  308 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDG------AKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNE  308 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHH------HHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCc
Confidence            63333222 2    378999999999876311      0123455667789999999999998553    33333 2 46


Q ss_pred             cceecC
Q 039327          310 IKKVHL  315 (315)
Q Consensus       310 L~~l~l  315 (315)
                      |+.+++
T Consensus       309 ~~~~~~  314 (319)
T cd00116         309 LESLWV  314 (319)
T ss_pred             hhhccc
Confidence            666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=3.2e-18  Score=125.10  Aligned_cols=153  Identities=24%  Similarity=0.300  Sum_probs=72.3

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      ..++.|.+|.|+++ .+| ..+..+.+|+.|++.+|+++++|..+..  .+  +|++|++ +.|.+. ..|..|..++-|
T Consensus        33 s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie~lp~~iss--l~--klr~lnv-gmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIEELPTSISS--LP--KLRILNV-GMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhhhcChhhhh--ch--hhhheec-chhhhh-cCccccCCCchh
Confidence            34444555555554 333 1344455555555555555555554443  44  4555555 433333 344445555555


Q ss_pred             CeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           83 EDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        83 ~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      +.||+.+|++.. .+|..+ -.++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|.++.. +..|++|.+
T Consensus       105 evldltynnl~e~~lpgnf-f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrelhi  180 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNF-FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRELHI  180 (264)
T ss_pred             hhhhccccccccccCCcch-hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHHhc
Confidence            555555554432 333332 24444555555555443 34444445555555555555444 44554444 445555555


Q ss_pred             ecCcCC
Q 039327          162 STNALH  167 (315)
Q Consensus       162 ~~n~~~  167 (315)
                      ++|+++
T Consensus       181 qgnrl~  186 (264)
T KOG0617|consen  181 QGNRLT  186 (264)
T ss_pred             ccceee
Confidence            555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=3.9e-18  Score=124.60  Aligned_cols=155  Identities=28%  Similarity=0.459  Sum_probs=99.2

Q ss_pred             cccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcE
Q 039327          103 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI  182 (315)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  182 (315)
                      ++.+++.|.+++|+++ .+|..++.+.+|+.|++.+|+++ ++|..+.. ++.|+.|++..|++. ..|..|+++|.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhh
Confidence            4556666777777766 45556667777777777777776 67766665 667777777777666 66777777777777


Q ss_pred             EEccCcccc-CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCC
Q 039327          183 LDLSSNQLT-GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN  261 (315)
Q Consensus       183 L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  261 (315)
                      |++..|++. ..+|..+| .+..|+.|.++.|.+. ..|..+.++.+|+.|.+.+|.+- ..|..++.+..|++|.+++|
T Consensus       107 ldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            777766654 23455555 3555666666666553 34455556666666666666655 45566666666666666666


Q ss_pred             ccc
Q 039327          262 SLS  264 (315)
Q Consensus       262 ~i~  264 (315)
                      +++
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.1e-13  Score=113.75  Aligned_cols=208  Identities=22%  Similarity=0.233  Sum_probs=144.6

Q ss_pred             CCCccceEEeecCcccccCCC-cccCCCcccceeecccccccc---cccccccCCCCccccEEEEeccCCCCcccccc-c
Q 039327            1 HLTSIEELYLSNNHFQIPISL-EPLFNHSRLKRLWAYNNEIKA---EITESHSLTAPNFQLQSLLLSSGYGDGVTFPK-F   75 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~   75 (315)
                      ++++|+.+.+.++... ..+. .+...||+++.|||++|-+..   +..-+.  .+|  +|+.|++ +.|.+.-...+ .
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e--qLp--~Le~LNl-s~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAE--QLP--SLENLNL-SSNRLSNFISSNT  192 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHH--hcc--cchhccc-ccccccCCccccc
Confidence            4678999999999775 2221 467889999999999997665   222222  277  8999999 77776532222 2


Q ss_pred             cccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCc--hhhhhcC
Q 039327           76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIP--VEIGDIL  153 (315)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~  153 (315)
                      -..+++|+.|.++.|.++..-..++...+|+|+.|++..|...........-+..|+.|++++|.+- .++  ..... +
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~-l  270 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGT-L  270 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccc-c
Confidence            2257899999999999986666666788999999999998533233344555778999999998876 444  33333 7


Q ss_pred             CCceEEEeecCcCCCC-CCcc-----ccCCCCCcEEEccCccccCcC-chhhccCCCcccEEEccCCCCCC
Q 039327          154 PSLFSFNISTNALHGS-IPSS-----FGNMNFLRILDLSSNQLTGEI-PERLAVGCVNLEFLALSNNNLKG  217 (315)
Q Consensus       154 ~~L~~L~l~~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~  217 (315)
                      +.|..|+++.++++.. .|+.     ...+++|++|++..|++.+.- -..+. ..++|+.+.+.+|.+..
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLNK  340 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhcccccccc
Confidence            8889999999888732 2322     356788999999999885211 12222 36677777777776653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.4e-13  Score=114.71  Aligned_cols=135  Identities=19%  Similarity=0.102  Sum_probs=56.4

Q ss_pred             ccEEEEeccCCCCccccc-cccccCCCCCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcC-CCcCCCCcc
Q 039327           56 QLQSLLLSSGYGDGVTFP-KFLYHQHDLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRL-PIHPHRRLR  132 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~  132 (315)
                      +|+.+.+ .++.+..... .....|++++.||++.|-+.. .....+...+|+|+.|+++.|.+...... .-..+++++
T Consensus       122 kL~~IsL-dn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISL-DNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheee-cCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            4555555 4444432111 234445555555555554432 11122234555555555555544321110 011234455


Q ss_pred             EEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcccc
Q 039327          133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT  191 (315)
Q Consensus       133 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~  191 (315)
                      .|.++.|+++..-...+...+|+++.|++.+|...........-+..|++|++++|.+.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            55555555543222222223555555555555211111112233344555555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.31  E-value=2.5e-13  Score=110.18  Aligned_cols=138  Identities=23%  Similarity=0.258  Sum_probs=72.3

Q ss_pred             CCceEEEeecCcCCC----CCCccccCCCCCcEEEccCccccCcCc---hhhccCCCcccEEEccCCCCCC----ccccc
Q 039327          154 PSLFSFNISTNALHG----SIPSSFGNMNFLRILDLSSNQLTGEIP---ERLAVGCVNLEFLALSNNNLKG----HMFCR  222 (315)
Q Consensus       154 ~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~----~~~~~  222 (315)
                      +.|+.+...+|++..    .+...|...+.|+.+.+..|.+.....   ...+.++++|+.||++.|-++.    .+..+
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            455666665555431    112234555666666666665541111   1122356667777777666553    23344


Q ss_pred             ccCCCCCCEEEcCCCcccccccccc-----ccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCcc
Q 039327          223 NFNLANLRQLQLEDNRFIGEIPQSL-----SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI  297 (315)
Q Consensus       223 ~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~  297 (315)
                      +..+++|+++++++|.+...-..++     ...|.|+.+.+.+|.|+.=.      ...+..+....|.|..|++++|++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da------~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA------ALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH------HHHHHHHHhcchhhHHhcCCcccc
Confidence            5566677777777776654322222     23567777777777665300      001122233456677777777776

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=1.3e-12  Score=106.10  Aligned_cols=187  Identities=23%  Similarity=0.243  Sum_probs=106.0

Q ss_pred             cccCCCCCeEEecCceecccCCh---hhhhcccccceeEeecCCCcCcC-------------cCCCcCCCCccEEEcccC
Q 039327           76 LYHQHDLEDVHLSHIKMNGKFPN---WLLENNAKLETLFLINDSIGGPF-------------RLPIHPHRRLRFLDVSNN  139 (315)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l~~~  139 (315)
                      +..+++|+.+++|+|-+....+.   .+++++..|++|.|.+|.+....             .......++|+++...+|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            34456777777777766543332   22456667777777777654311             112344566777777777


Q ss_pred             cCCCCCch----hhhhcCCCceEEEeecCcCCC----CCCccccCCCCCcEEEccCccccCcCch---hhccCCCcccEE
Q 039327          140 NFQGHIPV----EIGDILPSLFSFNISTNALHG----SIPSSFGNMNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFL  208 (315)
Q Consensus       140 ~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L  208 (315)
                      .+. ..+.    ..+...+.|+.+.+..|+|..    .....+..+++|+.|++.+|.++.....   ..+..+++|+.+
T Consensus       168 rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  168 RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            665 3332    223335677777777776641    1123456677777777777766522211   122346667777


Q ss_pred             EccCCCCCCcccccc-----cCCCCCCEEEcCCCccccc----cccccccCCCCcEEEccCCcc
Q 039327          209 ALSNNNLKGHMFCRN-----FNLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNNNSL  263 (315)
Q Consensus       209 ~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i  263 (315)
                      +++.|.+......++     ...+.|+.+.+.+|.++..    +...+...|.|+.|++++|++
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            777777654322221     2466777777777776532    223334466777777777776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=3e-13  Score=116.32  Aligned_cols=174  Identities=28%  Similarity=0.366  Sum_probs=136.8

Q ss_pred             CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327           80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF  159 (315)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  159 (315)
                      .--...|++.|++. .+|..+ ..+-.|+.+.++.|.+. .+|.++.++..|++++++.|++. .+|..++. + -|+.|
T Consensus        75 tdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkvl  148 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKVL  148 (722)
T ss_pred             cchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cceeE
Confidence            33446778888887 677764 67788888888888876 67888888889999999998887 88888885 4 68888


Q ss_pred             EeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327          160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF  239 (315)
Q Consensus       160 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (315)
                      .+.+|.++ .+|..++..++|..++.+.|.+. .+|..+. .+..|+.|.++.|++...++ .+. .-.|..||++.|++
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNki  223 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKI  223 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCce
Confidence            88888888 77878888888888888888887 7777766 47788888888888776543 333 33478888888888


Q ss_pred             ccccccccccCCCCcEEEccCCcccc
Q 039327          240 IGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       240 ~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      . .+|..|..++.|++|.|.+|.+++
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCCC
Confidence            7 778888888888888888887773

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=2.6e-11  Score=92.12  Aligned_cols=129  Identities=29%  Similarity=0.363  Sum_probs=39.2

Q ss_pred             CCCceEEEeecCcCCCCCCcccc-CCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327          153 LPSLFSFNISTNALHGSIPSSFG-NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ  231 (315)
Q Consensus       153 ~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  231 (315)
                      +..+++|++.+|.|+ .+. .++ .+.+|+.|++++|.+. .++.  ...++.|++|++++|.++.........+++|++
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            345677777777776 232 343 4566777777777776 4432  223666777777777766543222234666777


Q ss_pred             EEcCCCcccccc-ccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecc
Q 039327          232 LQLEDNRFIGEI-PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDIS  293 (315)
Q Consensus       232 L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~  293 (315)
                      |++++|.+.... -..+..+|+|+.|++.+|.+..-.    ...   ...+..+|+|+.||-.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~----~YR---~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK----NYR---LFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST----THH---HHHHHH-TT-SEETTE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh----hHH---HHHHHHcChhheeCCE
Confidence            777777665321 234556666667776666655311    011   2335556666666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=4.3e-11  Score=104.94  Aligned_cols=195  Identities=29%  Similarity=0.371  Sum_probs=117.6

Q ss_pred             eeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC-CCCeEEecCceecccCChhhhhccccccee
Q 039327           32 RLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH-DLEDVHLSHIKMNGKFPNWLLENNAKLETL  110 (315)
Q Consensus        32 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  110 (315)
                      .+.++.+.+..-+..+..  ..  .++.|++ .++.+. .++....... +|+.|++++|.+. .+|..+ +.+++|+.|
T Consensus        97 ~l~~~~~~~~~~~~~~~~--~~--~l~~L~l-~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L  168 (394)
T COG4886          97 SLDLNLNRLRSNISELLE--LT--NLTSLDL-DNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNL  168 (394)
T ss_pred             eeeccccccccCchhhhc--cc--ceeEEec-CCcccc-cCccccccchhhcccccccccchh-hhhhhh-hcccccccc
Confidence            355555555332222222  22  5777777 666666 3444444553 7777777777776 443332 677777777


Q ss_pred             EeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccc
Q 039327          111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL  190 (315)
Q Consensus       111 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  190 (315)
                      ++++|++.. ++......+.|+.|++++|.+. .+|..... ...|+++.+.+|.+. ..+..+.++.++..+.+.+|.+
T Consensus       169 ~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         169 DLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             ccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence            777777663 3443335667777777777776 66665432 445777777777433 3445566667777777776666


Q ss_pred             cCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327          191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE  242 (315)
Q Consensus       191 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (315)
                      . ..+.... .+++++.|++++|.+.....  +....+++.++++++.+...
T Consensus       245 ~-~~~~~~~-~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         245 E-DLPESIG-NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             e-eccchhc-cccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            5 3333333 46667777777777766443  55667777777777766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=1.6e-12  Score=111.98  Aligned_cols=158  Identities=30%  Similarity=0.416  Sum_probs=70.9

Q ss_pred             cccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhh
Q 039327           72 FPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGD  151 (315)
Q Consensus        72 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  151 (315)
                      +|..+..+..|+.+.++.|.+. .+|..+ +++..|..++++.|+++ ..|..+..++ |+.|.+++|.++ .+|..+. 
T Consensus        90 lp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig-  163 (722)
T KOG0532|consen   90 LPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG-  163 (722)
T ss_pred             CchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc-
Confidence            4444444444444444444443 334333 44444444444444443 2333333332 444444444444 4444444 


Q ss_pred             cCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327          152 ILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ  231 (315)
Q Consensus       152 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  231 (315)
                      ..+.|..|+.+.|.+. .+|..++.+.+|+.+.+..|.+. .+|..+.  .-.|..||+++|++.. +|..|.+++.|++
T Consensus       164 ~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis~-iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKISY-LPVDFRKMRHLQV  238 (722)
T ss_pred             cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCceee-cchhhhhhhhhee
Confidence            2444444444444444 34444444444444444444444 4444443  2224444555444432 2344444455555


Q ss_pred             EEcCCCccc
Q 039327          232 LQLEDNRFI  240 (315)
Q Consensus       232 L~l~~n~~~  240 (315)
                      |-|..|.++
T Consensus       239 l~LenNPLq  247 (722)
T KOG0532|consen  239 LQLENNPLQ  247 (722)
T ss_pred             eeeccCCCC
Confidence            555544443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=1.2e-11  Score=98.90  Aligned_cols=198  Identities=23%  Similarity=0.230  Sum_probs=95.9

Q ss_pred             ccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCce-ecc----cCC
Q 039327           23 PLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK-MNG----KFP   97 (315)
Q Consensus        23 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~----~~~   97 (315)
                      .+.-+.+|+.+.++.+.-..+-.-..  .-|  .|+++.+ .+..+... | .+.-...+.....+.-. .+|    .++
T Consensus       209 ~l~~f~~l~~~~~s~~~~~~i~~~~~--~kp--tl~t~~v-~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d  281 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTENIVDIEL--LKP--TLQTICV-HNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSAD  281 (490)
T ss_pred             chHHhhhhheeeeeccchhheeceee--cCc--hhheeee-eccccccc-c-cccchhhhcCccCCCCCccCCceEEecc
Confidence            35556778888888875433111100  134  7888888 66554421 1 11111111111111100 111    122


Q ss_pred             hhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCC
Q 039327           98 NWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM  177 (315)
Q Consensus        98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~  177 (315)
                      .|     ..|+++++++|.++ .+..+..-.|+++.|++++|.+. .+.. +.. +++|+.||+++|.++ ....+-.++
T Consensus       282 TW-----q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~-L~~L~~LDLS~N~Ls-~~~Gwh~KL  351 (490)
T KOG1259|consen  282 TW-----QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAE-LPQLQLLDLSGNLLA-ECVGWHLKL  351 (490)
T ss_pred             hH-----hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhh-cccceEeecccchhH-hhhhhHhhh
Confidence            11     34566666666554 34444555566666666666654 3322 222 556666666666555 223333445


Q ss_pred             CCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCc-ccccccCCCCCCEEEcCCCccc
Q 039327          178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGH-MFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       178 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      -+++.|.+++|.+. .+.. +. .+-+|..||+++|++... --..+..+|.|+++.+.+|.+.
T Consensus       352 GNIKtL~La~N~iE-~LSG-L~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIE-TLSG-LR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             cCEeeeehhhhhHh-hhhh-hH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            55666666666554 2211 11 244556666666665432 1234455666666666666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=8e-11  Score=103.21  Aligned_cols=201  Identities=31%  Similarity=0.468  Sum_probs=131.1

Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCC-CccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHR-RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS  162 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  162 (315)
                      .++.+.+.+......  ....+.++.+++.++.+.. ++......+ +|+.|++++|.+. .+|..+.. +++|+.|++.
T Consensus        97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccCchh--hhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhc-cccccccccC
Confidence            466666665323222  1345677778888777763 444445553 7888888888776 66545554 7788888888


Q ss_pred             cCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327          163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE  242 (315)
Q Consensus       163 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (315)
                      .|.++ ..|......+.|+.+++++|.+. .+|.... ....|+++.+++|.+.. .+..+....++..+.+.+|++. .
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~  246 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-D  246 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-e
Confidence            88777 45544446777888888888877 6666542 25557788888775332 2445556677777777777765 3


Q ss_pred             cccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc
Q 039327          243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH  306 (315)
Q Consensus       243 ~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  306 (315)
                      .+..+..++.++.|++++|.+..++           . ++...+++.|++++|.++..++....
T Consensus       247 ~~~~~~~l~~l~~L~~s~n~i~~i~-----------~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         247 LPESIGNLSNLETLDLSNNQISSIS-----------S-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccchhccccccceeccccccccccc-----------c-ccccCccCEEeccCccccccchhhhc
Confidence            3566667777888888888777533           2 66677788888888777655554433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=7.7e-11  Score=89.53  Aligned_cols=126  Identities=29%  Similarity=0.339  Sum_probs=36.8

Q ss_pred             CCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEE
Q 039327          129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFL  208 (315)
Q Consensus       129 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  208 (315)
                      .++++|++.++.++ .+. .+...+.+|+.|++++|.++ .++ .+..++.|++|++++|.+. .+...+...+++|+.|
T Consensus        19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            34455555555444 221 22222445555555555555 222 2444555566666666555 3433322235556666


Q ss_pred             EccCCCCCCcc-cccccCCCCCCEEEcCCCcccccc---ccccccCCCCcEEEcc
Q 039327          209 ALSNNNLKGHM-FCRNFNLANLRQLQLEDNRFIGEI---PQSLSKCSSLEGLYLN  259 (315)
Q Consensus       209 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~  259 (315)
                      .+++|.+.+.. -..+..+++|+.|++.+|.++...   ...+..+|+|+.||-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            66666554321 234456677777777777765321   1334556777777654

>PLN03150 hypothetical protein; Provisional

Probab=99.08  E-value=4.2e-10  Score=103.52  Aligned_cols=107  Identities=27%  Similarity=0.458  Sum_probs=74.1

Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      ++.|+++++.+.+.+|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEEC
Confidence            5667777777777777664 67777777777777777667767777777777777777777667766665 667777777


Q ss_pred             ecCcCCCCCCccccCC-CCCcEEEccCccc
Q 039327          162 STNALHGSIPSSFGNM-NFLRILDLSSNQL  190 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~  190 (315)
                      ++|.+++.+|..+... .++..+++.+|..
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCcc
Confidence            7777777777665542 3455666666643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=1.2e-10  Score=93.35  Aligned_cols=119  Identities=25%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCc
Q 039327          175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLE  254 (315)
Q Consensus       175 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  254 (315)
                      ..+..|+++++++|.+. .+..++- -.|.++.|+++.|.+....  .+..+++|++||+++|.++ .+..|-..+.+.+
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            34455566666666555 4444443 3555666666666555432  2445556666666666554 3333333444455


Q ss_pred             EEEccCCcccc------------ccCCCCcccc-CCchhhcccCCCCEEecccCccC
Q 039327          255 GLYLNNNSLSD------------ITMPKNHLEG-PIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       255 ~L~l~~n~i~~------------l~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                      .|.+.+|.|.+            +++.+|++.. .-...++++|-|+.+.+.+|.+.
T Consensus       356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            55555554443            2222222221 01235667777777777777776

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=1.2e-09  Score=100.48  Aligned_cols=106  Identities=35%  Similarity=0.555  Sum_probs=57.0

Q ss_pred             ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEc
Q 039327          131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL  210 (315)
Q Consensus       131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  210 (315)
                      ++.|+++++.+.+.+|..+.. +++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+. .+++|+.|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEEC
Confidence            455555555555555555544 55555555555555555555555555555555555555555555444 3555555555


Q ss_pred             cCCCCCCcccccccC-CCCCCEEEcCCCc
Q 039327          211 SNNNLKGHMFCRNFN-LANLRQLQLEDNR  238 (315)
Q Consensus       211 ~~n~~~~~~~~~~~~-~~~L~~L~l~~n~  238 (315)
                      ++|.+.+..|..+.. ..++..+++.+|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            555555555544432 2234455555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.94  E-value=5.2e-10  Score=105.45  Aligned_cols=128  Identities=20%  Similarity=0.119  Sum_probs=94.0

Q ss_pred             CCccceEEeecCc--ccccCCCcccCCCcccceeecccc-cccccccccccCCCCccccEEEEeccCCCCcccccccccc
Q 039327            2 LTSIEELYLSNNH--FQIPISLEPLFNHSRLKRLWAYNN-EIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYH   78 (315)
Q Consensus         2 l~~L~~l~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~   78 (315)
                      +++|++|-+.+|.  +. .++.+.|..+|.|+.||+++| .+..+|..+++  +-  +||+|++ +.+.+. .+|..+.+
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--Li--~LryL~L-~~t~I~-~LP~~l~~  616 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--LV--HLRYLDL-SDTGIS-HLPSGLGN  616 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhh--hh--hhhcccc-cCCCcc-ccchHHHH
Confidence            5678889888886  43 556556889999999999976 45569988876  55  8999999 888887 79999999


Q ss_pred             CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCc--CcCcCCCcCCCCccEEEcc
Q 039327           79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG--GPFRLPIHPHRRLRFLDVS  137 (315)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~  137 (315)
                      +..|.+|++..+.....+|.. ...+++|++|.+......  ......+..+.+|+.+...
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             HHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            999999999887765455544 467899999998876422  1122234445555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=2.2e-09  Score=67.20  Aligned_cols=60  Identities=42%  Similarity=0.626  Sum_probs=34.7

Q ss_pred             CCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCcc
Q 039327          228 NLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI  297 (315)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~  297 (315)
                      +|+.|++++|.++...+.++..+++|++|++++|.+..+.          +.+|.++++|+.|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~----------~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP----------PDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE----------TTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC----------HHHHcCCCCCCEEeCcCCcC
Confidence            4556666666665444455555666666666666555433          45566666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=3.6e-09  Score=66.18  Aligned_cols=59  Identities=39%  Similarity=0.397  Sum_probs=30.8

Q ss_pred             cccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc
Q 039327          204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS  262 (315)
Q Consensus       204 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (315)
                      +|++|++++|.+....+..+..+++|++|++++|.++...+.++..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555554444455555555555555555554444455555555555555554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1.1e-10  Score=93.34  Aligned_cols=180  Identities=20%  Similarity=0.107  Sum_probs=120.8

Q ss_pred             ccEEEEeccCCCCcc-ccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCc--CcCCCcCCCCcc
Q 039327           56 QLQSLLLSSGYGDGV-TFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP--FRLPIHPHRRLR  132 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~  132 (315)
                      .+|++|+ ++..++. .+-..++.|.+|+.|.+.++++.+.+...+ +.-.+|+.++++.+.-...  ..-.+.+|..|.
T Consensus       186 Rlq~lDL-S~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDL-SNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhc-chhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            6888888 7766663 344456778889999998888887777765 6678899999888643221  112366788899


Q ss_pred             EEEcccCcCCCCCch-hhhhcCCCceEEEeecCcCC---CCCCccccCCCCCcEEEccCccc-cCcCchhhccCCCcccE
Q 039327          133 FLDVSNNNFQGHIPV-EIGDILPSLFSFNISTNALH---GSIPSSFGNMNFLRILDLSSNQL-TGEIPERLAVGCVNLEF  207 (315)
Q Consensus       133 ~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~---~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~~L~~  207 (315)
                      .|++++|.+..+... ...+.-++|..|+++|+.-.   .-+..-..++|++..||++++.. ....-..++ .++.|++
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~  342 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQH  342 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchhee
Confidence            999998887543322 22333467888888886433   11122246788999999988743 333333444 5888999


Q ss_pred             EEccCCCCCCcccc---cccCCCCCCEEEcCCCccc
Q 039327          208 LALSNNNLKGHMFC---RNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       208 L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~~~  240 (315)
                      |.++.|..  +.|.   .+...|.|.+|++.|+--.
T Consensus       343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             eehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence            99998864  2333   3456788999998886543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=1.1e-09  Score=87.64  Aligned_cols=211  Identities=16%  Similarity=0.079  Sum_probs=124.9

Q ss_pred             CCCeEEecCceecccC-ChhhhhcccccceeEeecCCCcC--cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327           81 DLEDVHLSHIKMNGKF-PNWLLENNAKLETLFLINDSIGG--PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF  157 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  157 (315)
                      -++.+.+.++.+.... ...+-..++.++++++.+|.+++  .+...+.++|+|+.|+++.|++...+-..-.. ..+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-LKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc-ccceE
Confidence            3445556555553221 12223556778888888887765  33345677888888888888776433222122 55888


Q ss_pred             EEEeecCcCC-CCCCccccCCCCCcEEEccCccccCcCc-hhhccC-CCcccEEEccCCCCCC--cccccccCCCCCCEE
Q 039327          158 SFNISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIP-ERLAVG-CVNLEFLALSNNNLKG--HMFCRNFNLANLRQL  232 (315)
Q Consensus       158 ~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~-~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L  232 (315)
                      .|.+.+..+. .+....+..+|.+++++++.|++....- ..-... -+.+.++.+-+|....  .....-+.++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            8888887665 3445566778888888888885541100 000001 2245555555554221  111222356777778


Q ss_pred             EcCCCccccccc-cccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC
Q 039327          233 QLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL  301 (315)
Q Consensus       233 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~  301 (315)
                      .+..|.+...-. .....+|.+..|+++.++|.++.         -.+++.+++.|+-|-+.++.+++.+
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa---------svD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA---------SVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHH---------HHHHHcCCchhheeeccCCcccccc
Confidence            887777654322 33445677777888877776544         1246778888888888888876444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.75  E-value=6.5e-09  Score=98.20  Aligned_cols=205  Identities=20%  Similarity=0.212  Sum_probs=120.9

Q ss_pred             cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCC--CccccccccccCCCCCeEEecCceecccCChhhh
Q 039327           24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYG--DGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLL  101 (315)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  101 (315)
                      ..+....+.+.+.++.+..++...     .+.++++|-+ ..+.  +.....+.|..++.|+.||+++|.--+.+|..+ 
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~~~-----~~~~L~tLll-~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-  591 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAGSS-----ENPKLRTLLL-QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-  591 (889)
T ss_pred             ccchhheeEEEEeccchhhccCCC-----CCCccceEEE-eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-
Confidence            334456777777777776655542     2226888888 6664  343344557778888888888877666888886 


Q ss_pred             hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC--CCCCccccCCCC
Q 039327          102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH--GSIPSSFGNMNF  179 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~  179 (315)
                      +.+-+|++|+++++.+. .+|..+++++.|.+|++..+.....+|..... +.+|++|.+......  ...-..+..+.+
T Consensus       592 ~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  592 GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhh-cccccEEEeeccccccchhhHHhhhcccc
Confidence            78888888888888877 67888888888888888776654334333333 778888888765422  111122344455


Q ss_pred             CcEEEccCccccCcCchhhccCCCccc----EEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          180 LRILDLSSNQLTGEIPERLAVGCVNLE----FLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       180 L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      |+.+........  +-..+. ....|.    .+.+.++.. ...+..+..+++|+.|.+.++.+.+
T Consensus       670 L~~ls~~~~s~~--~~e~l~-~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  670 LENLSITISSVL--LLEDLL-GMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhhheeecchhH--hHhhhh-hhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence            555444332220  001111 122221    222222111 1233445567777777777777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.69  E-value=2.1e-09  Score=85.06  Aligned_cols=134  Identities=19%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             ccEEEEeccCCCCcccccc----ccccCCCCCeEEecCceecc----cCChhh--------hhcccccceeEeecCCCcC
Q 039327           56 QLQSLLLSSGYGDGVTFPK----FLYHQHDLEDVHLSHIKMNG----KFPNWL--------LENNAKLETLFLINDSIGG  119 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~----~~~~~~--------~~~~~~L~~L~l~~~~~~~  119 (315)
                      ++++.++ +.|.+....|+    .++.-..|.+|.+++|.+..    .+...+        .++-|.|+++....|++..
T Consensus        93 ~l~~v~L-SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238          93 RLQKVDL-SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             cceeeec-cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            5555555 55555444332    23344555555555554421    111111        1223455555555554432


Q ss_pred             cC----cCCCcCCCCccEEEcccCcCCCCCc-----hhhhhcCCCceEEEeecCcCCCC----CCccccCCCCCcEEEcc
Q 039327          120 PF----RLPIHPHRRLRFLDVSNNNFQGHIP-----VEIGDILPSLFSFNISTNALHGS----IPSSFGNMNFLRILDLS  186 (315)
Q Consensus       120 ~~----~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~  186 (315)
                      -.    ...+..-..|+.+.+.+|.+...-.     ..++. +.+|+.||+++|.++..    +...++.|+.|++|.+.
T Consensus       172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            10    0112222345555555555442100     01122 44555555555555421    11233445555555555


Q ss_pred             Ccccc
Q 039327          187 SNQLT  191 (315)
Q Consensus       187 ~n~~~  191 (315)
                      .|-+.
T Consensus       251 DClls  255 (388)
T COG5238         251 DCLLS  255 (388)
T ss_pred             chhhc
Confidence            55444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=7e-10  Score=88.77  Aligned_cols=155  Identities=22%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             ccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC-cCCC-CCCccccCCCCCcE
Q 039327          106 KLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN-ALHG-SIPSSFGNMNFLRI  182 (315)
Q Consensus       106 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~-~~~~~l~~~~~L~~  182 (315)
                      .++++|+++..++. .....++.|.+|+.|.+.++.+.+.+...+.. -.+|+.++++++ +++. ...-.+.+++.|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35555555544432 11123444555555555555555555555544 345555555543 2221 11112345555555


Q ss_pred             EEccCccccCcCchhh-ccCCCcccEEEccCCCCC---CcccccccCCCCCCEEEcCCCc-cccccccccccCCCCcEEE
Q 039327          183 LDLSSNQLTGEIPERL-AVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNR-FIGEIPQSLSKCSSLEGLY  257 (315)
Q Consensus       183 L~l~~n~~~~~~~~~~-~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~  257 (315)
                      |+++.|....+.-... ..--++++.|+++|+.-.   .......+++++|.+||+++|. ++.....++..++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            5555554432221111 111224555555554311   0111122345555666655543 2222233444555555555


Q ss_pred             ccCC
Q 039327          258 LNNN  261 (315)
Q Consensus       258 l~~n  261 (315)
                      ++.|
T Consensus       345 lsRC  348 (419)
T KOG2120|consen  345 LSRC  348 (419)
T ss_pred             hhhh
Confidence            5554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=3.8e-09  Score=92.97  Aligned_cols=104  Identities=22%  Similarity=0.190  Sum_probs=48.9

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      ++..+++ +.+.+.. +...+..+++|++|++++|.++...+   +..++.|+.|++.+|.+..  ...+..++.|+.++
T Consensus        96 ~l~~l~l-~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   96 SLEALDL-YDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD  168 (414)
T ss_pred             ceeeeec-cccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence            5555555 5555542 22224445555555555555543222   1344445555555555543  22233455555555


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  167 (315)
                      +++|.+. .+.......+..++.+.+.+|.+.
T Consensus       169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  169 LSYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             CCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence            5555554 332210112445555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=3.2e-09  Score=93.46  Aligned_cols=240  Identities=26%  Similarity=0.212  Sum_probs=129.1

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      ..++.+++..|.+.. +. ..+..+..|+.|++.+|.+..+...+..  ++  +|++|++ +.|.++..-+  +..++.|
T Consensus        72 ~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~--~~--~L~~L~l-s~N~I~~i~~--l~~l~~L  142 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKIEKIENLLSS--LV--NLQVLDL-SFNKITKLEG--LSTLTLL  142 (414)
T ss_pred             HhHHhhccchhhhhh-hh-cccccccceeeeeccccchhhcccchhh--hh--cchheec-cccccccccc--hhhccch
Confidence            345556666666652 12 2466777788888888877774442222  34  7888888 7777765332  5566668


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      +.|++++|.++ .+..  +..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+. .+.. +.. +..+..+++
T Consensus       143 ~~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~-~~~-~~~l~~~~l  215 (414)
T KOG0531|consen  143 KELNLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEG-LDL-LKKLVLLSL  215 (414)
T ss_pred             hhheeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccc-hHH-HHHHHHhhc
Confidence            88888888776 3332  2457778888888887764322 1 456677777777777665 2221 111 223334456


Q ss_pred             ecCcCCCCCCccccCCC--CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327          162 STNALHGSIPSSFGNMN--FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF  239 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (315)
                      ..|.++...+  +....  +|+.+++++|.+. ..+..+. ....+..+++..+.+...  ..+...+.+..+....+.+
T Consensus       216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~-~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  216 LDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE-NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL  289 (414)
T ss_pred             ccccceeccC--cccchhHHHHHHhcccCccc-ccccccc-ccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence            6666552222  11222  2666777777665 3322222 355566666666655432  1122334444444444443


Q ss_pred             ccc---ccc-ccccCCCCcEEEccCCccc
Q 039327          240 IGE---IPQ-SLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       240 ~~~---~~~-~~~~~~~L~~L~l~~n~i~  264 (315)
                      ...   ... .....+.+....+..+.+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  290 ALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             cchhhhhccccccccccccccccccCccc
Confidence            311   111 1233445555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=1.8e-08  Score=80.85  Aligned_cols=204  Identities=18%  Similarity=0.086  Sum_probs=102.1

Q ss_pred             CCcccceeecccccccc--cccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327           26 NHSRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN  103 (315)
Q Consensus        26 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  103 (315)
                      .++++++++|.+|.+++  ....+.+ ..|  .|+.|++ ++|.+...+-.--....+|++|.+.+..+......+....
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile-~lP--~l~~LNl-s~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILE-QLP--ALTTLNL-SCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHh-cCc--cceEeec-cCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            35667777777777665  1111111 255  6777777 6666654332221345567777777666655444444566


Q ss_pred             ccccceeEeecCCCcCcCc--CCCc-CCCCccEEEcccCcCCC-CCchhhhhcCCCceEEEeecCcCCCC-CCccccCCC
Q 039327          104 NAKLETLFLINDSIGGPFR--LPIH-PHRRLRFLDVSNNNFQG-HIPVEIGDILPSLFSFNISTNALHGS-IPSSFGNMN  178 (315)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~--~~l~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~  178 (315)
                      +|.+++|.++.|.+.....  .... .-+.+.++....|.... .--..+...+|++..+-+..+.+... ....+..+|
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            6777777777664322100  0000 11234444444443210 00011222356666666666655421 122344555


Q ss_pred             CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccc------ccccCCCCCCEEE
Q 039327          179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF------CRNFNLANLRQLQ  233 (315)
Q Consensus       179 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~  233 (315)
                      .+..|+++.+++...-..+....++.+.-|.++.+.+.+..-      -.+.++++++.|+
T Consensus       225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            566667777766533333334456677777777666543221      1233556666655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=2.4e-09  Score=95.40  Aligned_cols=128  Identities=27%  Similarity=0.266  Sum_probs=75.6

Q ss_pred             CceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEc
Q 039327          155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL  234 (315)
Q Consensus       155 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  234 (315)
                      .|...+.++|.+. .+...+.-++.++.|++++|++. .+. . ...++.|+.||++.|.++...--....++ |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~-Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-N-LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-H-HHhcccccccccccchhccccccchhhhh-heeeee
Confidence            4555666666665 45555666677777777777776 333 2 23477777777777776654333333444 777777


Q ss_pred             CCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327          235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       235 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                      .+|.++..  ..+.++++|+.||+++|-|..-.        .+ ..+..+..|+.|.+.||.+.
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hs--------eL-~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHS--------EL-EPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcch--------hh-hHHHHHHHHHHHhhcCCccc
Confidence            77776522  22346667777777777655311        11 12445556677777777765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=1.4e-09  Score=96.93  Aligned_cols=130  Identities=25%  Similarity=0.197  Sum_probs=91.2

Q ss_pred             CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceE
Q 039327           79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFS  158 (315)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  158 (315)
                      +..|.+.++++|.+. .+..++ .-++.++.|+|++|++..+.  .+..+++|++|+++.|.+. .+|.--...+ .|+.
T Consensus       163 Wn~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~  236 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQL  236 (1096)
T ss_pred             hhhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hhee
Confidence            456777888888775 333443 66788899999999887533  6788889999999998887 7776544434 4888


Q ss_pred             EEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCC
Q 039327          159 FNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK  216 (315)
Q Consensus       159 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  216 (315)
                      |.+.+|.++ .+. .+.++.+|+.||++.|-+.+.-.-...-.+..|+.|.+.||.+-
T Consensus       237 L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  237 LNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            899888877 332 46788888888998887763222121112556778888888653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.37  E-value=7.1e-09  Score=86.70  Aligned_cols=18  Identities=11%  Similarity=0.157  Sum_probs=10.1

Q ss_pred             hhhcccCCCCEEecccCc
Q 039327          279 VEFCQLYSLHILDISDNN  296 (315)
Q Consensus       279 ~~l~~~~~L~~L~l~~n~  296 (315)
                      +.+..|++|+++++.+++
T Consensus       420 e~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  420 EHLSICRNLERIELIDCQ  437 (483)
T ss_pred             HHHhhCcccceeeeechh
Confidence            344555666666666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.26  E-value=4.9e-08  Score=69.40  Aligned_cols=82  Identities=26%  Similarity=0.259  Sum_probs=35.0

Q ss_pred             CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327           80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF  159 (315)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  159 (315)
                      .+|+..++++|.+. .+|..+...++.++.+++.+|.++ .+|..++.++.|+.|+++.|.+. ..|..++. +.++-+|
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML  128 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence            34444444444444 333333333444444444444444 23333444444444444444443 34444433 3344444


Q ss_pred             EeecCc
Q 039327          160 NISTNA  165 (315)
Q Consensus       160 ~l~~n~  165 (315)
                      +..+|.
T Consensus       129 ds~~na  134 (177)
T KOG4579|consen  129 DSPENA  134 (177)
T ss_pred             cCCCCc
Confidence            444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=4.9e-08  Score=69.41  Aligned_cols=131  Identities=18%  Similarity=0.164  Sum_probs=92.2

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccc-cCCCCCeEEecCceecccCChhhhhccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLY-HQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      .+..++|+.|++-.+++.... ......|+.+++ ++|.+. .+|..+. +.+.++++++++|.+. .+|.. +..++.|
T Consensus        28 E~h~ldLssc~lm~i~davy~-l~~~~el~~i~l-s~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aL  102 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYM-LSKGYELTKISL-SDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPAL  102 (177)
T ss_pred             HhhhcccccchhhHHHHHHHH-HhCCceEEEEec-ccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHh
Confidence            466777888876654433322 233447888899 888887 4555554 5578999999999998 77887 4899999


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  167 (315)
                      +.|+++.|++. ..|..+..+.++.+|+..++... .++.+++. .......++.++.+.
T Consensus       103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPLG  159 (177)
T ss_pred             hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCccc
Confidence            99999999987 46666667888999999888886 78877553 223333344444444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.22  E-value=8.9e-07  Score=70.46  Aligned_cols=205  Identities=22%  Similarity=0.185  Sum_probs=114.3

Q ss_pred             ccEEEEeccCCCCccccc----cccccCCCCCeEEecCce---ecccCChhh------hhcccccceeEeecCCCcCcCc
Q 039327           56 QLQSLLLSSGYGDGVTFP----KFLYHQHDLEDVHLSHIK---MNGKFPNWL------LENNAKLETLFLINDSIGGPFR  122 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~---~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~  122 (315)
                      .++.+++ ++|.+.....    ..+++..+|+..++++--   ..+.++..+      .-.||+|++.++++|-+....|
T Consensus        31 ~~~evdL-SGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          31 ELVEVDL-SGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             ceeEEec-cCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            7888888 8888776543    344556777777776532   222333322      3567888888888887765544


Q ss_pred             C----CCcCCCCccEEEcccCcCCCCCch-hhh----h--------cCCCceEEEeecCcCCCCCC----ccccCCCCCc
Q 039327          123 L----PIHPHRRLRFLDVSNNNFQGHIPV-EIG----D--------ILPSLFSFNISTNALHGSIP----SSFGNMNFLR  181 (315)
Q Consensus       123 ~----~l~~~~~L~~L~l~~~~~~~~~~~-~~~----~--------~~~~L~~L~l~~n~~~~~~~----~~l~~~~~L~  181 (315)
                      .    .+++...|.+|.+++|++. .+.. .+.    .        .-|.|+......|++.....    ..+....+|+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            3    2456677888888888765 2221 111    1        13456777776666552111    1223334667


Q ss_pred             EEEccCccccCcCc-----hhhccCCCcccEEEccCCCCCCc----ccccccCCCCCCEEEcCCCcccccccccc-----
Q 039327          182 ILDLSSNQLTGEIP-----ERLAVGCVNLEFLALSNNNLKGH----MFCRNFNLANLRQLQLEDNRFIGEIPQSL-----  247 (315)
Q Consensus       182 ~L~l~~n~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----  247 (315)
                      ++.+..|.+....-     ..++ .+.+|+.||++.|-++..    +..++..++.|++|.+.+|.++..-..++     
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            77777776652210     1122 256677777777765532    23344456667777777766653322211     


Q ss_pred             -ccCCCCcEEEccCCcc
Q 039327          248 -SKCSSLEGLYLNNNSL  263 (315)
Q Consensus       248 -~~~~~L~~L~l~~n~i  263 (315)
                       ...|+|..|...+|.+
T Consensus       268 e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         268 EKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hhcCCCccccccchhhh
Confidence             1235666666666643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.18  E-value=5.9e-07  Score=83.04  Aligned_cols=134  Identities=20%  Similarity=0.166  Sum_probs=76.4

Q ss_pred             ccEEEEeccCCCCccccccccc-cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLY-HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL  134 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  134 (315)
                      +|++|++++...+....|..++ .+|.|++|.+++-.+...-...++.++|+|..||++++.++..  ..++++++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            7777777333333333333333 3677888887776654322233356777788888887776642  556677777777


Q ss_pred             EcccCcCCC-CCchhhhhcCCCceEEEeecCcCCCCCCc-------cccCCCCCcEEEccCccccCc
Q 039327          135 DVSNNNFQG-HIPVEIGDILPSLFSFNISTNALHGSIPS-------SFGNMNFLRILDLSSNQLTGE  193 (315)
Q Consensus       135 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~l~~~~~L~~L~l~~n~~~~~  193 (315)
                      .+.+-.+.. ..-.+++. +.+|+.||++...... .+.       .-..+|+|+.||.+++.+...
T Consensus       201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             hccCCCCCchhhHHHHhc-ccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            776655442 12235555 6777777777654331 111       112356666666666655533

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.17  E-value=2.9e-08  Score=83.17  Aligned_cols=137  Identities=22%  Similarity=0.216  Sum_probs=87.2

Q ss_pred             cCCCCccEEEcccCcC-CCCCchhhhhcCCCceEEEeecCcCCC--CCCccccCCCCCcEEEccCccccCcC-chhhccC
Q 039327          126 HPHRRLRFLDVSNNNF-QGHIPVEIGDILPSLFSFNISTNALHG--SIPSSFGNMNFLRILDLSSNQLTGEI-PERLAVG  201 (315)
Q Consensus       126 ~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~  201 (315)
                      ..+.+|+.+..+++.. ++..-..+.....+|+.+.+.++..-+  .+...=.+++.|+.+++..+...... -.++..+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            3467788888876543 322334556667889999998875320  11112256788999999887654222 1234457


Q ss_pred             CCcccEEEccCCCCC-Ccccc----cccCCCCCCEEEcCCCccc-cccccccccCCCCcEEEccCCc
Q 039327          202 CVNLEFLALSNNNLK-GHMFC----RNFNLANLRQLQLEDNRFI-GEIPQSLSKCSSLEGLYLNNNS  262 (315)
Q Consensus       202 ~~~L~~L~l~~n~~~-~~~~~----~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~  262 (315)
                      ++.|+.+.++.|... +....    .-.....++.+.++++... +..-+.+..++.|+.+++-+++
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            889999999977543 22111    1235667888999888754 3445667788899998887664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.10  E-value=2.4e-06  Score=48.97  Aligned_cols=40  Identities=35%  Similarity=0.353  Sum_probs=30.0

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccccc
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI   44 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   44 (315)
                      ++|++|++++|.++ .++ ..+.++++|++|++++|++++++
T Consensus         1 ~~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCCCCCc
Confidence            57888999999887 566 24888899999999988887643

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.06  E-value=3.1e-05  Score=66.58  Aligned_cols=18  Identities=17%  Similarity=0.171  Sum_probs=9.1

Q ss_pred             Ccccceeecccccccccc
Q 039327           27 HSRLKRLWAYNNEIKAEI   44 (315)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~   44 (315)
                      ++++++|++++|.++.+|
T Consensus        51 ~~~l~~L~Is~c~L~sLP   68 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP   68 (426)
T ss_pred             hcCCCEEEeCCCCCcccC
Confidence            344555555555554444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=1.7e-05  Score=60.57  Aligned_cols=106  Identities=25%  Similarity=0.247  Sum_probs=67.4

Q ss_pred             CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc-ccccccCCCCcEEE
Q 039327          179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI-PQSLSKCSSLEGLY  257 (315)
Q Consensus       179 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~  257 (315)
                      ....+++++|.+. ..  ..+.+++.|.+|.+.+|+++.+.|..-..+++|..|.+.+|.+.... -..+..||+|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4566777777765 32  22335777888888888887776666666777888888887776321 23456677788887


Q ss_pred             ccCCccccccCCCCccccCCchhhcccCCCCEEeccc
Q 039327          258 LNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD  294 (315)
Q Consensus       258 l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~  294 (315)
                      +-+|.+..-.    +..   -..++++|+|+.||+..
T Consensus       120 ll~Npv~~k~----~YR---~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKK----NYR---LYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhccc----Cce---eEEEEecCcceEeehhh
Confidence            7777655311    000   12356777777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=7.5e-06  Score=46.93  Aligned_cols=19  Identities=42%  Similarity=0.606  Sum_probs=10.0

Q ss_pred             hhcccCCCCEEecccCccC
Q 039327          280 EFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       280 ~l~~~~~L~~L~l~~n~~~  298 (315)
                      .++++++|+.|++++|+++
T Consensus        19 ~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen   19 ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             HGTTCTTSSEEEETSSCCS
T ss_pred             hHhCCCCCCEEEecCCCCC
Confidence            3555555555555555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.96  E-value=4.4e-06  Score=77.40  Aligned_cols=132  Identities=20%  Similarity=0.235  Sum_probs=76.1

Q ss_pred             cccceeecccccccc--cccccccCCCCccccEEEEeccCCCC-ccccccccccCCCCCeEEecCceecccCChhhhhcc
Q 039327           28 SRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGD-GVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENN  104 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  104 (315)
                      .+|++|+|++...-.  .|..++. .+|  .|++|.+ .+..+ .+.+.....++++|..||+|+++++..  .. .+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~-~LP--sL~sL~i-~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~G-IS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGT-MLP--SLRSLVI-SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SG-ISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhh-hCc--ccceEEe-cCceecchhHHHHhhccCccceeecCCCCccCc--HH-Hhcc
Confidence            357777776654322  4444444 566  7777777 44433 233444455677777777777777633  23 3677


Q ss_pred             cccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCCCCCch------hhhhcCCCceEEEeecCcCC
Q 039327          105 AKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHIPV------EIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       105 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~L~~L~l~~n~~~  167 (315)
                      ++|++|.+.+-.+.. ..-..+-++++|+.||++..... ..+.      +....+|+|+.||.+++.+.
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777777777655443 11223556777777777765543 2221      11223667777777776665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.95  E-value=2.9e-05  Score=56.53  Aligned_cols=14  Identities=7%  Similarity=0.190  Sum_probs=5.0

Q ss_pred             CCcCCCCccEEEcc
Q 039327          124 PIHPHRRLRFLDVS  137 (315)
Q Consensus       124 ~l~~~~~L~~L~l~  137 (315)
                      +|..+++++.+.+.
T Consensus        30 ~F~~~~~l~~i~~~   43 (129)
T PF13306_consen   30 AFSNCTSLKSINFP   43 (129)
T ss_dssp             TTTT-TT-SEEEES
T ss_pred             hccccccccccccc
Confidence            34444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=3.9e-05  Score=58.59  Aligned_cols=106  Identities=21%  Similarity=0.362  Sum_probs=66.5

Q ss_pred             CCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCch-hhccCCCcccE
Q 039327          129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPE-RLAVGCVNLEF  207 (315)
Q Consensus       129 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~  207 (315)
                      .+...+++++|.+. .++ . +..++.|.+|.+.+|+|+...|..-..+++++.|.+.+|++. .+.. .-.+.||.|+.
T Consensus        42 d~~d~iDLtdNdl~-~l~-~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-N-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchh-hcc-c-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence            45677788887764 222 2 223778888888888888655554455677888888888776 3221 11224777888


Q ss_pred             EEccCCCCCCc---ccccccCCCCCCEEEcCCCc
Q 039327          208 LALSNNNLKGH---MFCRNFNLANLRQLQLEDNR  238 (315)
Q Consensus       208 L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~  238 (315)
                      |.+-+|.+...   -.-.+..+|+|+.||+..-.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            88877776542   12234467777777776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.82  E-value=7.6e-05  Score=54.30  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             CCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCC
Q 039327          124 PIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCV  203 (315)
Q Consensus       124 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  203 (315)
                      +|..+.+|+.+.+.. .+. .++...+..+.+++.+.+..+ +.......|..+++++.+.+.. .+. .++...+..++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            455555566665543 233 444444444555666665543 3323333455555555555543 222 33444444455


Q ss_pred             cccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327          204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLE  235 (315)
Q Consensus       204 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  235 (315)
                      .++.+++..+ +.......+..+ .++.+.+.
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            5555555433 333333334443 45555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00033  Score=60.43  Aligned_cols=137  Identities=18%  Similarity=0.132  Sum_probs=80.7

Q ss_pred             cccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccC-cCCCCCchhhhhcCC
Q 039327           76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN-NFQGHIPVEIGDILP  154 (315)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~  154 (315)
                      +..+.+++.|++++|.++ .+|.    -.++|++|.+++|.-....|..+  .++|++|++++| .+. .+       .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL-------P~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL-------PE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc-------cc
Confidence            445788899999988776 5552    23468888888765434455444  357888888877 333 33       34


Q ss_pred             CceEEEeecCcCCCCCCccccCC-CCCcEEEccCcccc--CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327          155 SLFSFNISTNALHGSIPSSFGNM-NFLRILDLSSNQLT--GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ  231 (315)
Q Consensus       155 ~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  231 (315)
                      +|+.|++.++... .    +..+ ++|+.|.+.++...  ...+. .  -+++|++|++++|.... .|..+  +.+|+.
T Consensus       113 sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~  181 (426)
T PRK15386        113 SVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNII-LPEKL--PESLQS  181 (426)
T ss_pred             ccceEEeCCCCCc-c----cccCcchHhheecccccccccccccc-c--cCCcccEEEecCCCccc-Ccccc--cccCcE
Confidence            6777777665433 1    2222 24666666443211  01111 1  25678888888877543 23222  357888


Q ss_pred             EEcCCCc
Q 039327          232 LQLEDNR  238 (315)
Q Consensus       232 L~l~~n~  238 (315)
                      |.++.+.
T Consensus       182 L~ls~n~  188 (426)
T PRK15386        182 ITLHIEQ  188 (426)
T ss_pred             EEecccc
Confidence            8887653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=1.3e-06  Score=69.73  Aligned_cols=101  Identities=18%  Similarity=0.060  Sum_probs=78.6

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccc-cccccccCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT-FPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~   80 (315)
                      +.+.+.|+..||.+. .+.  ...+||.|+.|.|+-|.|+++..-     -.|++|+.|++ +.|.|.+. --..+++++
T Consensus        18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~pl-----~rCtrLkElYL-RkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAPL-----QRCTRLKELYL-RKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchhH-----HHHHHHHHHHH-HhcccccHHHHHHHhcCc
Confidence            456788999999997 454  567899999999999999884432     44669999999 88888742 123578899


Q ss_pred             CCCeEEecCceecccCChh----hhhcccccceeE
Q 039327           81 DLEDVHLSHIKMNGKFPNW----LLENNAKLETLF  111 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~  111 (315)
                      +|++|++..|..-+..+..    ++..+|+|++||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999999999876655432    257789999986

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=7.3e-05  Score=59.44  Aligned_cols=112  Identities=25%  Similarity=0.233  Sum_probs=61.8

Q ss_pred             cccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCC--CCCCcccccccCCCCCCEEEcCCCccccc-ccccccc
Q 039327          173 SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNN--NLKGHMFCRNFNLANLRQLQLEDNRFIGE-IPQSLSK  249 (315)
Q Consensus       173 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~  249 (315)
                      ....+..++.+++.+..++ .+..  +-.+++|+.|.++.|  ++...+......+++|+++++++|++... .-..+..
T Consensus        38 l~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            3344555666666666555 2221  224677888888877  44444444445567888888888877631 1122344


Q ss_pred             CCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEeccc
Q 039327          250 CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD  294 (315)
Q Consensus       250 ~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~  294 (315)
                      +++|..|++.+|....+.  +     .=-..|.-+++|+.|+-..
T Consensus       115 l~nL~~Ldl~n~~~~~l~--d-----yre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLD--D-----YREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hcchhhhhcccCCccccc--c-----HHHHHHHHhhhhccccccc
Confidence            556667777776654311  1     1112355566666665443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=1.4e-05  Score=63.97  Aligned_cols=100  Identities=21%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327           80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF  159 (315)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  159 (315)
                      .+.+.|++.||.+++.   ++...++.|++|.|+-|+++..  ..+..|++|++|++..|.+.+--.......+++|+.|
T Consensus        19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3445556656555431   2235566666666666666532  2355566666666666655421112223335566666


Q ss_pred             EeecCcCCCCCCc-----cccCCCCCcEEE
Q 039327          160 NISTNALHGSIPS-----SFGNMNFLRILD  184 (315)
Q Consensus       160 ~l~~n~~~~~~~~-----~l~~~~~L~~L~  184 (315)
                      -|..|...+..+.     .+..+|+|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6666555433322     234455555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.19  E-value=1.5e-05  Score=71.84  Aligned_cols=63  Identities=25%  Similarity=0.102  Sum_probs=32.2

Q ss_pred             cCCCCCeEEecCce-ecccCChhhhhcccccceeEeecCC-CcCcC-cCCCcCCCCccEEEcccCc
Q 039327           78 HQHDLEDVHLSHIK-MNGKFPNWLLENNAKLETLFLINDS-IGGPF-RLPIHPHRRLRFLDVSNNN  140 (315)
Q Consensus        78 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~l~~~~~L~~L~l~~~~  140 (315)
                      .+++|+.++++++. +++.....+...|++|++|.+.++. +++.. ......++.|++|+++++.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            45666666666655 4444444443446666666655554 33211 1223345556666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.01  E-value=0.00038  Score=55.47  Aligned_cols=108  Identities=19%  Similarity=0.128  Sum_probs=71.4

Q ss_pred             cCCCcccceeecccccccccccccccCCCCccccEEEEeccCC--CCccccccccccCCCCCeEEecCceecc--cCChh
Q 039327           24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGY--GDGVTFPKFLYHQHDLEDVHLSHIKMNG--KFPNW   99 (315)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~   99 (315)
                      ...+..|+.+++.+..++++.. +.+  +|  +|++|.+ +.|  .+.+.++.....+++|+++++++|++..  .+.. 
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~-~P~--Lp--~LkkL~l-sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-  111 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTN-FPK--LP--KLKKLEL-SDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-  111 (260)
T ss_pred             cccccchhhhhhhccceeeccc-CCC--cc--hhhhhcc-cCCcccccccceehhhhCCceeEEeecCCccccccccch-
Confidence            3456677777777777666222 111  55  8999999 777  4444455555667999999999998863  2222 


Q ss_pred             hhhcccccceeEeecCCCcCcCc---CCCcCCCCccEEEcccC
Q 039327          100 LLENNAKLETLFLINDSIGGPFR---LPIHPHRRLRFLDVSNN  139 (315)
Q Consensus       100 ~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~  139 (315)
                       ...+++|..|++.+|..+...-   ..|.-+++|++|+-...
T Consensus       112 -l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  112 -LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             -hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence             3677888999999987664111   23555778887776443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.86  E-value=0.00015  Score=65.39  Aligned_cols=112  Identities=22%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             CCCCCeEEecCcee-cccCChhhhhcccccceeEeecC-CCcCcC----cCCCcCCCCccEEEcccCc-CCCCCchhhhh
Q 039327           79 QHDLEDVHLSHIKM-NGKFPNWLLENNAKLETLFLIND-SIGGPF----RLPIHPHRRLRFLDVSNNN-FQGHIPVEIGD  151 (315)
Q Consensus        79 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~  151 (315)
                      ++.|+.+.+.++.- ...--..+...++.|++|+++++ ......    ......+++|+.++++++. +++..-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            46666666665532 21111222356667777776652 111111    1223345666667776665 44333333333


Q ss_pred             cCCCceEEEeecCc-CC-CCCCccccCCCCCcEEEccCccc
Q 039327          152 ILPSLFSFNISTNA-LH-GSIPSSFGNMNFLRILDLSSNQL  190 (315)
Q Consensus       152 ~~~~L~~L~l~~n~-~~-~~~~~~l~~~~~L~~L~l~~n~~  190 (315)
                      .+++|+.|.+.++. ++ ..+......++.|++|+++.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            35667777655554 33 11122234566677777766543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.39  E-value=0.009  Score=26.31  Aligned_cols=14  Identities=29%  Similarity=0.347  Sum_probs=5.0

Q ss_pred             ccceeecccccccc
Q 039327           29 RLKRLWAYNNEIKA   42 (315)
Q Consensus        29 ~L~~L~l~~~~~~~   42 (315)
                      +|+.|++++|.++.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444433

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.16  E-value=0.012  Score=27.87  Aligned_cols=17  Identities=18%  Similarity=0.093  Sum_probs=8.0

Q ss_pred             cceeecccccccccccc
Q 039327           30 LKRLWAYNNEIKAEITE   46 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~   46 (315)
                      |++|++++|+++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44445555544444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=0.0043  Score=47.70  Aligned_cols=82  Identities=24%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeeccccccc-c-cccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIK-A-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      .++.++.+++.|... -.+.+.+++.++.|.+.+|.-. + -..-+.. ..+  +|+.|+|+.+..|++..-..+.++++
T Consensus       102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~--~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAP--SLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcc-ccc--chheeeccCCCeechhHHHHHHHhhh
Confidence            456677777777622 2246667777777777766322 2 1111111 233  67777774466666555555666666


Q ss_pred             CCeEEecC
Q 039327           82 LEDVHLSH   89 (315)
Q Consensus        82 L~~L~l~~   89 (315)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            66666644

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.38  E-value=0.00016  Score=64.29  Aligned_cols=38  Identities=21%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             CCeEEecCceecccCChhh---hhcccccceeEeecCCCcC
Q 039327           82 LEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGG  119 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~  119 (315)
                      +.++++.+|.+.......+   ....+.|+.+++++|.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~  129 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD  129 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc
Confidence            5566666666554332222   2444566666666665553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.07  E-value=0.00012  Score=65.06  Aligned_cols=183  Identities=21%  Similarity=0.156  Sum_probs=94.9

Q ss_pred             cceEEeecCcccccCC---CcccCCCcccceeecccccccc-----cccccccCCCCccccEEEEeccCCCCccc----c
Q 039327            5 IEELYLSNNHFQIPIS---LEPLFNHSRLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVT----F   72 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~   72 (315)
                      +.++.+.+|.+.....   ...+..++.|+.|++++|.+..     +-..+   ..+...+++|++ ..+.++..    +
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l---~~~~~~l~~L~l-~~c~l~~~g~~~l  164 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGL---RLPQCLLQTLEL-VSCSLTSEGAAPL  164 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhc---ccchHHHHHHHh-hcccccccchHHH
Confidence            5566666666652211   1344556777777777777664     11111   122236666777 66666543    3


Q ss_pred             ccccccCCCCCeEEecCceecc----cCChhh---hhcccccceeEeecCCCcCcC----cCCCcCCCC-ccEEEcccCc
Q 039327           73 PKFLYHQHDLEDVHLSHIKMNG----KFPNWL---LENNAKLETLFLINDSIGGPF----RLPIHPHRR-LRFLDVSNNN  140 (315)
Q Consensus        73 ~~~l~~~~~L~~L~l~~~~~~~----~~~~~~---~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~  140 (315)
                      .+.+....+++.++++.|.+..    .++..+   +....++++|.+.+|.++...    ...+...++ +..+++..|.
T Consensus       165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            3344456677777777766531    111221   113456777777776655311    122334444 5556776666


Q ss_pred             CCCCCchhhhhc---C-CCceEEEeecCcCCCCC----CccccCCCCCcEEEccCcccc
Q 039327          141 FQGHIPVEIGDI---L-PSLFSFNISTNALHGSI----PSSFGNMNFLRILDLSSNQLT  191 (315)
Q Consensus       141 ~~~~~~~~~~~~---~-~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~  191 (315)
                      +.+.....+...   + ..++.++++.|.++..-    ...+..++.++++.+..|.+.
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            653222222211   2 34567777777766322    223445556777777776655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.92  E-value=0.063  Score=26.49  Aligned_cols=19  Identities=21%  Similarity=0.190  Sum_probs=11.8

Q ss_pred             cccceeecccccccccccc
Q 039327           28 SRLKRLWAYNNEIKAEITE   46 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~   46 (315)
                      ++|++|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666665554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.92  E-value=0.063  Score=26.49  Aligned_cols=19  Identities=21%  Similarity=0.190  Sum_probs=11.8

Q ss_pred             cccceeecccccccccccc
Q 039327           28 SRLKRLWAYNNEIKAEITE   46 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~   46 (315)
                      ++|++|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666665554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.03  E-value=0.017  Score=44.60  Aligned_cols=86  Identities=16%  Similarity=0.021  Sum_probs=46.3

Q ss_pred             CCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecc-cCChhhhhcccccceeEeecC-CCcCcCcCCCcCCC
Q 039327           52 APNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLIND-SIGGPFRLPIHPHR  129 (315)
Q Consensus        52 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~  129 (315)
                      .+...++.++= +++.+..+.-+.+.+++.++.|.+.+|..-+ -..+.+-+-.++|+.|++++| .|++..-..+..++
T Consensus        98 ~~~~~IeaVDA-sds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk  176 (221)
T KOG3864|consen   98 ADNVKIEAVDA-SDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK  176 (221)
T ss_pred             CCcceEEEEec-CCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence            44456777777 6666666666666667777777776664321 111222223466666666655 24433333344555


Q ss_pred             CccEEEccc
Q 039327          130 RLRFLDVSN  138 (315)
Q Consensus       130 ~L~~L~l~~  138 (315)
                      +|+.|.+.+
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            555555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.35  E-value=0.15  Score=24.52  Aligned_cols=15  Identities=33%  Similarity=0.570  Sum_probs=6.5

Q ss_pred             CCCCEEEcCCCcccc
Q 039327          227 ANLRQLQLEDNRFIG  241 (315)
Q Consensus       227 ~~L~~L~l~~n~~~~  241 (315)
                      ++|++|++++|.+++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555443

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.59  E-value=0.63  Score=22.95  Aligned_cols=18  Identities=28%  Similarity=0.265  Sum_probs=12.4

Q ss_pred             cccceeeccccccccccc
Q 039327           28 SRLKRLWAYNNEIKAEIT   45 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~   45 (315)
                      ++|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357777777777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-21
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 14/232 (6%)
Query: 76  LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRF 133
           L     L+ + LS  + +G+ P  L   +A L TL L +++  GP    L  +P   L+ 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE 193
           L + NN F G IP  + +    L S ++S N L G+IPSS G+++ LR L L  N L GE
Sbjct: 399 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 194 IPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSL 253
           IP+ L      LE L L  N+L G +     N  NL  + L +NR  GEIP+ + +  +L
Sbjct: 458 IPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 254 EGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
             L L+NNS S          G IP E     SL  LD++ N  +G++P+  
Sbjct: 517 AILKLSNNSFS----------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 14/232 (6%)
Query: 76  LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRF 133
           L     L+ + LS  + +G+ P  L   +A L TL L +++  GP    L  +P   L+ 
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE 193
           L + NN F G IP  + +    L S ++S N L G+IPSS G+++ LR L L  N L GE
Sbjct: 396 LYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 194 IPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSL 253
           IP+ L      LE L L  N+L G +     N  NL  + L +NR  GEIP+ + +  +L
Sbjct: 455 IPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 254 EGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
             L L+NNS S          G IP E     SL  LD++ N  +G++P+  
Sbjct: 514 AILKLSNNSFS----------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 72  FPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIN---DSIGGPFRLPIHPH 128
            P  +     L  ++++H  ++G  P++L    ++++TL  ++   +++ G     I   
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
             L  +    N   G IP   G       S  IS N L G IP +F N+N L  +DLS N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLS 248
            L G+    L     N + + L+ N+L   +     +  NL  L L +NR  G +PQ L+
Sbjct: 208 MLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLT 265
Query: 249 KCSSLEGLYLNNNSL 263
           +   L  L ++ N+L
Sbjct: 266 QLKFLHSLNVSFNNL 280

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 73/187 (39%), Gaps = 38/187 (20%)
Query: 131 LRFLDVSN-NNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ 189
           L FL +   NN  G IP  I   L  L    I+   + G+IP     +  L  LD S N 
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 190 LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSK 249
           L+G +P  ++                         +L NL  +  + NR  G IP S   
Sbjct: 137 LSGTLPPSIS-------------------------SLPNLVGITFDGNRISGAIPDSYGS 171
Query: 250 CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF-HPL 308
            S L          + +T+ +N L G IP  F  L +L  +D+S N + G     F    
Sbjct: 172 FSKL---------FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 309 YIKKVHL 315
             +K+HL
Sbjct: 222 NTQKIHL 228

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT 191
           R LD+  N  +     E     P L    ++ N +    P +F N+  LR L L SN+L 
Sbjct: 35  RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 192 GEIPERLAVGCVNLEFLALSNNN---LKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLS 248
             IP  +  G  NL  L +S N    L  +MF    +L NL+ L++ DN  +    ++ S
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIVILLDYMF---QDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 249 KCSSLEGLYLNNNSLSDI-TMPKNHLEGPIPVE-------------FCQLYSLHILDIS 293
             +SLE L L   +L+ I T   +HL G I +              F +LY L +L+IS
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 145 IPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCV 203
           +P +  + L  L    +  N +  SIPS +F  +  LR LDL   +    I E    G V
Sbjct: 98  VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL 263
           NL +L L   NLK         L  L +L+L  NR     P S    +SL  L+L +  +
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 264 SDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP-SCFHPLY-IKKVHL 315
           +  T+ +N         F  L SL  L++S NN+  SLP   F PL+ +++VHL
Sbjct: 215 A--TIERN--------AFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHL 257

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (465), Expect = 2e-52
 Identities = 88/310 (28%), Positives = 137/310 (44%), Gaps = 25/310 (8%)

Query: 1   HLTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQ 58
            L S+E L LS N       +          LK L    N+I  ++  S         L+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR-CV----NLE 203

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
            L +SS        P FL     L+ + +S  K++G F   +     +L+ L + ++   
Sbjct: 204 FLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFV 260

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
           GP  +P  P + L++L ++ N F G IP  +     +L   ++S N  +G++P  FG+ +
Sbjct: 261 GP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNL-ANLRQLQLEDN 237
            L  L LSSN  +GE+P    +    L+ L LS N   G +     NL A+L  L L  N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378

Query: 238 RFIGEIPQSLSKC--SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
            F G I  +L +   ++L+ LYL NN  +          G IP        L  L +S N
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFT----------GKIPPTLSNCSELVSLHLSFN 428

Query: 296 NISGSLPSCF 305
            +SG++PS  
Sbjct: 429 YLSGTIPSSL 438

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (441), Expect = 4e-49
 Identities = 90/322 (27%), Positives = 139/322 (43%), Gaps = 29/322 (9%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT +E L+LSN+H    +S       + L  L    N +   +T   SL +    L+ L
Sbjct: 75  SLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFL 131

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNA--KLETLFLINDSIG 118
            +SS   D           + LE + LS   ++G      + ++   +L+ L +  + I 
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
           G   + +     L FLDVS+NNF   IP  +GD   +L   +IS N L G    +     
Sbjct: 192 GD--VDVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDFSRAISTCT 247

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM-FCRNFNLANLRQLQLEDN 237
            L++L++SSNQ  G IP    +   +L++L+L+ N   G +    +     L  L L  N
Sbjct: 248 ELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 238 RFIGEIPQSLSKCSSLEGLYLNNNSLSD---------------ITMPKNHLEGPIPVEFC 282
            F G +P     CS LE L L++N+ S                + +  N   G +P    
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 283 QL-YSLHILDISDNNISGSLPS 303
            L  SL  LD+S NN SG +  
Sbjct: 365 NLSASLLTLDLSSNNFSGPILP 386

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (430), Expect = 1e-47
 Identities = 88/313 (28%), Positives = 117/313 (37%), Gaps = 26/313 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
              ++  L LS NHF   +      + S L+ L   +N    E+     L      L+ L
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRG--LKVL 348

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAK-LETLFLINDSIGG 119
            LS     G            L  + LS    +G     L +N    L+ L+L N+   G
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                +     L  L +S N   G IP  +G  L  L    +  N L G IP     +  
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLED 236
           L  L L  N LTGEIP  L+  C NL +++LSNN L G           L NL  L+L +
Sbjct: 468 LETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIG---RLENLAILKLSN 523

Query: 237 NRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN 296
           N F G IP  L  C SL  L LN N  +          G IP    +        I+ N 
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFN----------GTIPAAMFKQ----SGKIAANF 569

Query: 297 ISGSLPSCFHPLY 309
           I+G          
Sbjct: 570 IAGKRYVYIKNDG 582

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (430), Expect = 1e-47
 Identities = 82/318 (25%), Positives = 134/318 (42%), Gaps = 18/318 (5%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
             + +E L LS+N+F   + ++ L     LK L    NE   E+ ES +  + +  L +L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS--LLTL 373

Query: 61  LLSSGYGDGVTFPKFL-YHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
            LSS    G   P      ++ L++++L +    GK P  L  N ++L +L L  + + G
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSG 432

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                +    +LR L +  N  +G IP E+   + +L +  +  N L G IPS   N   
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           L  + LS+N+LTGEIP+ +     NL  L LSNN+  G++     +  +L  L L  N F
Sbjct: 492 LNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 240 IGEIPQSLSKCSSLEGL------------YLNNNSLSDITMPKNHLEGPIPVEFCQLYSL 287
            G IP ++ K S                                  +G    +  +L + 
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 288 HILDISDNNISGSLPSCF 305
           +  +I+     G     F
Sbjct: 611 NPCNITSRVYGGHTSPTF 628

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (372), Expect = 1e-39
 Identities = 76/323 (23%), Positives = 129/323 (39%), Gaps = 38/323 (11%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
            + +  L+LS N+    I    L + S+L+ L  + N ++ EI +          L++L+
Sbjct: 417 CSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVK---TLETLI 472

Query: 62  LS----SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI 117
           L     +G       P  L +  +L  + LS+ ++ G+ P W+      L  L L N+S 
Sbjct: 473 LDFNDLTG-----EIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSF 526

Query: 118 GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177
            G     +   R L +LD++ N F G IP  +        S  I+ N + G       N 
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ-----SGKIAANFIAGKRYVYIKND 581

Query: 178 NFLRILDLSSN--QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235
              +    + N  +  G   E+L           +++    GH      N  ++  L + 
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPK---------------NHLEGPIPVE 280
            N   G IP+ +     L  L L +N +S  ++P                N L+G IP  
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 281 FCQLYSLHILDISDNNISGSLPS 303
              L  L  +D+S+NN+SG +P 
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (331), Expect = 3e-34
 Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 22/205 (10%)

Query: 118 GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS--SFG 175
                  +     L  L +SN++  G +         SL S ++S N+L G + +  S G
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM---FCRNFNLANLRQL 232
           + + L+ L++SSN L         +   +LE L LS N++ G     +  +     L+ L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS-------------DITMPKNHLEGPIPV 279
            +  N+  G++   +S+C +LE L +++N+ S              + +  N L G    
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241

Query: 280 EFCQLYSLHILDISDNNISGSLPSC 304
                  L +L+IS N   G +P  
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (276), Expect = 6e-27
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 28/238 (11%)

Query: 1   HLTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNN----EIKAEITESHSLTA-- 52
           + T++  + LSNN    +IP  +        L  L   NN     I AE+ +  SL    
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544

Query: 53  -----------PNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLS--HIKMNGKFPNW 99
                           QS  +++ +  G     ++ +    ++ H +   ++  G     
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 100 LLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF 159
           L    +      + +   GG        +  + FLD+S N   G+IP EIG  +P LF  
Sbjct: 604 LN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFIL 661

Query: 160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG 217
           N+  N + GSIP   G++  L ILDLSSN+L G IP+ ++     L  + LSNNNL G
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-ALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 4e-18
 Identities = 45/198 (22%), Positives = 73/198 (36%), Gaps = 13/198 (6%)

Query: 1   HLTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQ 58
              S+  L L+ N F   IP ++   F  S          +    I         +    
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAM---FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
            L             + L         +++     G       +NN  +  L +  + + 
Sbjct: 593 LLEFQG------IRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMSYNMLS 645

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
           G     I     L  L++ +N+  G IP E+GD L  L   ++S+N L G IP +   + 
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 179 FLRILDLSSNQLTGEIPE 196
            L  +DLS+N L+G IPE
Sbjct: 705 MLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 221 CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVE 280
           CR+  + ++       N     +  SL   + LE L+L+N+ ++          G +   
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN----------GSVS-G 95

Query: 281 FCQLYSLHILDISDNNISGSLPSCFH 306
           F    SL  LD+S N++SG + +   
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTS 121

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (344), Expect = 5e-38
 Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 22/219 (10%)

Query: 103 NNAKLETLFLINDSIGGPFRLP--IHPHRRLRFLDVSN-NNFQGHIPVEIGDILPSLFSF 159
              ++  L L   ++  P+ +P  +     L FL +   NN  G IP  I   L  L   
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYL 106

Query: 160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM 219
            I+   + G+IP     +  L  LD S N L+G +P  ++    NL  +    N + G +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAI 165

Query: 220 FCRNFNLANLRQ-LQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS-------------- 264
                + + L   + +  NR  G+IP + +   +L  + L+ N L               
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 265 DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
            I + KN L   +  +     +L+ LD+ +N I G+LP 
Sbjct: 225 KIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  130 bits (330), Expect = 6e-36
 Identities = 62/241 (25%), Positives = 96/241 (39%), Gaps = 27/241 (11%)

Query: 71  TFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP-----FRLPI 125
             P  +     L  ++++H  ++G  P++L      L TL    +++ G        LP 
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLP- 149

Query: 126 HPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDL 185
                L  +    N   G IP   G       S  IS N L G IP +F N+N L  +DL
Sbjct: 150 ----NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204

Query: 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
           S N L G+          N + + L+ N+L   +  +     NL  L L +NR  G +PQ
Sbjct: 205 SRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI--SGSLPS 303
            L++   L  L ++           N+L G IP     L    +   ++N       LP+
Sbjct: 263 GLTQLKFLHSLNVSF----------NNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPA 311

Query: 304 C 304
           C
Sbjct: 312 C 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  119 bits (301), Expect = 1e-31
 Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 40/186 (21%)

Query: 124 PIHPHRRLRFLDVSNNNFQG--HIPVEIGDILPSLFSFNIS-TNALHGSIPSSFGNMNFL 180
                 R+  LD+S  N      IP  + + LP L    I   N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             L ++   ++G IP+ L+                          +  L  L    N   
Sbjct: 104 HYLYITHTNVSGAIPDFLS-------------------------QIKTLVTLDFSYNALS 138

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLH-ILDISDNNISG 299
           G +P S+S   +L G+  + N +S          G IP  +     L   + IS N ++G
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRIS----------GAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 300 SLPSCF 305
            +P  F
Sbjct: 189 KIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (264), Expect = 2e-26
 Identities = 40/175 (22%), Positives = 61/175 (34%), Gaps = 39/175 (22%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGS--IPSSFGNMNFLRILDLSS-NQL 190
            D  N  + G +          + + ++S   L     IPSS  N+ +L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKC 250
            G IP  +A                          L  L  L +      G IP  LS+ 
Sbjct: 90  VGPIPPAIA-------------------------KLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 251 SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
            +L  L  + N+LS          G +P     L +L  +    N ISG++P  +
Sbjct: 125 KTLVTLDFSYNALS----------GTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 87.2 bits (217), Expect = 5e-20
 Identities = 42/216 (19%), Positives = 82/216 (37%), Gaps = 16/216 (7%)

Query: 2   LTSIEELYLSNNHF--QIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQ 58
           LT +  LY+++ +    IP  L  +     L  L    N +   +  S  SL      L 
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQI---KTLVTLDFSYNALSGTLPPSISSLP----NLV 152

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
            +        G     +         + +S  ++ GK P      N  L  + L  + + 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLE 210

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
           G   +     +  + + ++ N+    +  ++G    +L   ++  N ++G++P     + 
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNN 214
           FL  L++S N L GEIP+         +  A +NN 
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNK 302

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (309), Expect = 2e-31
 Identities = 55/320 (17%), Positives = 113/320 (35%), Gaps = 34/320 (10%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT + + Y+ N+ F      E  + +        Y  + K E  +  +L      L  +
Sbjct: 204 RLTKLRQFYMGNSPFVAENICE-AWENENS----EYAQQYKTEDLKWDNLK----DLTDV 254

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSH--------IKMNGKFPNWLLENNAKLETLFL 112
            + +        P FL    +++ ++++         +K + +          K++ +++
Sbjct: 255 EVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA-PVGEKIQIIYI 312

Query: 113 INDSI-GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIP 171
             +++   P    +   ++L  L+   N  +G +P   G     L S N++ N +     
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPA 370

Query: 172 SSFGNMNFLRILDLSSNQLTGEIPERLAVG-CVNLEFLALSNNNLKGHMFCRN------- 223
           +  G    +  L  + N+L   IP          +  +  S N +               
Sbjct: 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 224 FNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQ 283
           F   N+  + L +N+      +  S  S L  + L  N L++I  PKN L       F  
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI--PKNSL-KDENENFKN 486

Query: 284 LYSLHILDISDNNISGSLPS 303
            Y L  +D+  N ++     
Sbjct: 487 TYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (276), Expect = 5e-27
 Identities = 58/328 (17%), Positives = 115/328 (35%), Gaps = 42/328 (12%)

Query: 2   LTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
              I+ +Y+  N+ +  P+    L    +L  L    N+++ ++    S      +L SL
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEI----KLASL 358

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL-------I 113
            L+      +    F      +E++  +H K+      +  ++ + +  +         +
Sbjct: 359 NLAYNQITEIP-ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 114 NDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHG----- 168
           +     P          +  +++SNN        E+      L S N+  N L       
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 169 --SIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNL 226
                 +F N   L  +DL  N+LT    +  A     L  + LS N+       +  N 
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535

Query: 227 ANLRQLQLED------NRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVE 280
           + L+   + +      NR + E P+ ++ C SL  L + +N +             +  +
Sbjct: 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-----------VNEK 584

Query: 281 FCQLYSLHILDISDNNISGSLPSCFHPL 308
                ++ +LDI DN       S   P 
Sbjct: 585 ITP--NISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  108 bits (271), Expect = 2e-26
 Identities = 33/306 (10%), Positives = 84/306 (27%), Gaps = 41/306 (13%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLW-AYNNEIKAEITESHSLTAPNFQLQSL 60
              +  L L        +    +   + L+ L    + E   E        + N   +  
Sbjct: 80  NGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 61  LLSSGYGDGVTFPKFLYHQH-DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
                +               DL    ++                 K   +  ++++I  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITF 197

Query: 120 PFRLP--IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177
              +   +    +LR   + N+ F      E  +        N      + +    + N+
Sbjct: 198 ---VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE------NSEYAQQYKTEDLKWDNL 248

Query: 178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN 237
             L  +++ +     ++P  L      ++ + ++ N                     E  
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGIS----------------GEQL 291

Query: 238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297
           +   +          ++ +Y+  N+L            P+     ++  L +L+   N +
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLK---------TFPVETSLQKMKKLGMLECLYNQL 342

Query: 298 SGSLPS 303
            G LP+
Sbjct: 343 EGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (265), Expect = 1e-25
 Identities = 49/349 (14%), Positives = 105/349 (30%), Gaps = 64/349 (18%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
              S E+      H+Q   +  +P  + S L +    ++  +  I +S  +T     L+ 
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT-----LKD 185

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFP--NWLLENNAKLETLFLINDSI 117
             +     +     K +     L   ++ +     +     W  EN+   +     +   
Sbjct: 186 TQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 118 GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNAL----------- 166
                      + L  ++V N      +P  +   LP +   N++ N             
Sbjct: 246 DN--------LKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQ 296

Query: 167 ----------------------HGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204
                                    + +S   M  L +L+   NQL G++P       + 
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FG-SEIK 354

Query: 205 LEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSLS--KCSSLEGLYLN 259
           L  L L+ N +     +          +  L    N+ +  IP        S +  +  +
Sbjct: 355 LASLNLAYNQITEIPANFCG---FTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFS 410

Query: 260 NNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
            N +  +         P+     +  ++  +++S+N IS      F   
Sbjct: 411 YNEIGSVD---GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  100 bits (252), Expect = 6e-24
 Identities = 39/319 (12%), Positives = 88/319 (27%), Gaps = 56/319 (17%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT +E L L ++  ++   L                      I+ + S      Q   +
Sbjct: 103 QLTELEVLALGSHGEKVNERL-----------------FGPKGISANMSDE--QKQKMRM 143

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
                + D      F     DL    ++                 K   +  ++++I   
Sbjct: 144 HYQKTFVDYDPREDFS----DLIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNNITF- 197

Query: 121 FRLP--IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
             +   +    +LR   + N+ F      E  +        N      + +    + N+ 
Sbjct: 198 --VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE------NSEYAQQYKTEDLKWDNLK 249

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN--------FNLANLR 230
            L  +++ +     ++P  L      ++ + ++ N        ++             ++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 231 QLQLEDNRFI-GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHI 289
            + +  N      +  SL K   L  L    N L                 F     L  
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-----------KLPAFGSEIKLAS 357

Query: 290 LDISDNNISGSLPSCFHPL 308
           L+++ N I+    +     
Sbjct: 358 LNLAYNQITEIPANFCGFT 376

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 27/241 (11%), Positives = 71/241 (29%), Gaps = 16/241 (6%)

Query: 71  TFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRR 130
             P  +    +LE + L           +  +  +   +            +  +    R
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 131 LRFLDV-----SNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDL 185
             F D+     +++  Q  I      I          +N +   +  +   +  LR   +
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYM 213

Query: 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
            ++    E        C   E               +  NL +L  +++ +   + ++P 
Sbjct: 214 GNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI-SGSLPSC 304
            L     ++ + +  N    I+  +   +     +      + I+ I  NN+ +  + + 
Sbjct: 268 FLKALPEMQLINVACNRG--ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 305 F 305
            
Sbjct: 326 L 326

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.1 bits (237), Expect = 6e-22
 Identities = 47/289 (16%), Positives = 100/289 (34%), Gaps = 36/289 (12%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKA--EITESHSLTAPNFQL 57
               +  L L+ N    IP +        +++ L   +N++K    I ++ S++     +
Sbjct: 351 SEIKLASLNLAYNQITEIPANF--CGFTEQVENLSFAHNKLKYIPNIFDAKSVS----VM 404

Query: 58  QSLLLSS------GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLF 111
            ++  S          +        +   ++  ++LS+ +++  FP  L    + L ++ 
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSIN 463

Query: 112 L-------INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-LPSLFSFNIST 163
           L       I  +              L  +D+  N     +  +     LP L   ++S 
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSY 522

Query: 164 NALHGSIPSSFGNMNFLRIL------DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG 217
           N+     P+   N + L+        D   N+   E PE +   C +L  L + +N+++ 
Sbjct: 523 NSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIRK 580

Query: 218 HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266
                     N+  L ++DN  I      +          L  +   DI
Sbjct: 581 --VNEKI-TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 8e-18
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 22/229 (9%)

Query: 88  SHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG---- 143
             + M G  P   L +N ++  L L      G     I     L  L + ++  +     
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 144 HIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI--LDLSSNQLTGEIPERLAVG 201
             P  I     S             +        +F  +    ++S+     I +  +  
Sbjct: 124 FGPKGISA-NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-SSRI 181

Query: 202 CVNLEFLALSNNNLKG--HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLN 259
            +    +   +NN+            L  LRQ  + ++ F+ E      +  + E     
Sbjct: 182 TLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 260 NN---------SLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
                       L+D+ +        +P     L  + +++++ N    
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 20/212 (9%), Positives = 59/212 (27%), Gaps = 40/212 (18%)

Query: 135 DVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEI 194
           +   + +     V +      +   ++      G +P + G +  L +L L S+      
Sbjct: 63  NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 195 PERL-----------------------------AVGCVNLEFLALSNNNLKGHMFCRNFN 225
                                                 +L    ++++  +  +   +  
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 226 LANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPK---------NHLEGP 276
                Q+    N  I  + +++ + + L   Y+ N+      + +               
Sbjct: 182 TLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 277 IPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
             +++  L  L  +++ +      LP+    L
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 22/171 (12%), Positives = 48/171 (28%), Gaps = 22/171 (12%)

Query: 153 LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSN 212
             + ++FN   +        S  +   +  L L     +G +P+ +      LE LAL +
Sbjct: 56  PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGS 114

Query: 213 NNLKGHMFCRNF----NLANLRQLQLEDNRFIGEIPQSLSK--CSSLEGLYLNNNSLS-- 264
           +  K +             +  Q Q     +         +   S L    +N++     
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 265 ------------DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
                        I    N++   +     +L  L    + ++        
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC 224

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (299), Expect = 4e-30
 Identities = 52/305 (17%), Positives = 100/305 (32%), Gaps = 25/305 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT++    L +   +    ++    +   + L   N +           T     L+ L
Sbjct: 280 CLTNVSSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKF------GQFPTLKLKSLKRL 330

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGK-FPNWLLENNAKLETLFLINDSIGG 119
             +S  G        L     LE + LS   ++ K   +        L+ L L  + +  
Sbjct: 331 TFTSNKGGNAFSEVDL---PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                     +L  LD  ++N +      +   L +L   +IS      +    F  ++ 
Sbjct: 388 MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           L +L ++ N         +     NL FL LS   L+        +L++L+ L +  N F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL-YSLHILDISDNNIS 298
                      +SL+ L  + N +                E      SL  L+++ N+ +
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIM----------TSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 299 GSLPS 303
            +   
Sbjct: 557 CTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.8 bits (244), Expect = 8e-23
 Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 17/198 (8%)

Query: 123 LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182
           +P +     + LD+S N  +           P L   ++S   +      ++ +++ L  
Sbjct: 22  IPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG- 241
           L L+ N +        + G  +L+ L     NL         +L  L++L +  N     
Sbjct: 81  LILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHI----LDISDNNI 297
           ++P+  S  ++LE L L++N +  I             +   L+ + +    LD+S N +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSI----------YCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 298 SGSLPSCFHPLYIKKVHL 315
           +   P  F  + + K+ L
Sbjct: 190 NFIQPGAFKEIRLHKLTL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 57/316 (18%), Positives = 108/316 (34%), Gaps = 28/316 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQS 59
            + +I    +  N ++IP +L         K L    N ++   + S  S      +LQ 
Sbjct: 6   VVPNITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFP----ELQV 56

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L LS      +           L  + L+   +            + L+ L  +  ++  
Sbjct: 57  LDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLAS 114

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQG-HIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
               PI   + L+ L+V++N  Q   +P    + L +L   ++S+N +     +    ++
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 179 FLRI----LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQ 233
            + +    LDLS N +    P   A   + L  L L NN    ++       LA L   +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 234 LEDNRFIGEIPQ---SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHIL 290
           L    F  E        S    L  L +    L+ +    ++    I   F  L ++   
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL----DYYLDDIIDLFNCLTNVSSF 287

Query: 291 DISDNNISGSLPSCFH 306
            +    I       ++
Sbjct: 288 SLVSVTIERVKDFSYN 303

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 3e-22
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 20/177 (11%)

Query: 135 DVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEI 194
                NF   IP    ++  S  + ++S N L      SF +   L++LDLS  ++    
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 195 PERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCS 251
                    +L  L L+ N ++      F     L++L++L   +          +    
Sbjct: 69  DGAYQ-SLSHLSTLILTGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 252 SLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
           +L+ L + +N +             +P  F  L +L  LD+S N I     +    L
Sbjct: 125 TLKELNVAHNLIQSF---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 68/379 (17%), Positives = 114/379 (30%), Gaps = 79/379 (20%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQS 59
            L+ +  L L+ N  Q  ++L      S L++L A    + +        L      L+ 
Sbjct: 74  SLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TLKE 128

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWL--------------LENNA 105
           L ++         P++  +  +LE + LS  K+   +   L              L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 106 ------------KLETLFLINDSIGGPF-RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI 152
                       +L  L L N+       +  I     L    +    F+    +E  D 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 153 --LPSLFSFNISTNAL------HGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204
             L  L +  I    L         I   F  +  +    L S  +              
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFG 305

Query: 205 LEFLALSNN-------------------NLKGHMFCRNFNLANLRQLQLEDNR--FIGEI 243
            + L L N                    + KG       +L +L  L L  N   F G  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 244 PQSLSKCSSLEGLYLNNNSLSDITMP-------------KNHLEGPIPVE-FCQLYSLHI 289
            QS    +SL+ L L+ N +  ++                ++L+       F  L +L  
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 290 LDISDNNISGSLPSCFHPL 308
           LDIS  +   +    F+ L
Sbjct: 426 LDISHTHTRVAFNGIFNGL 444

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 56/252 (22%), Positives = 85/252 (33%), Gaps = 10/252 (3%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
            L S+E L LS N         +  F  + LK L    N +    +    L     QL+ 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE----QLEH 400

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L         ++         +L  + +SH      F        + LE L +  +S   
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQE 459

Query: 120 PF-RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
            F        R L FLD+S    +   P      L SL   N+S N         +  +N
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNFNLANLRQLQLED 236
            L++LD S N +     + L     +L FL L+ N+             + + RQL +E 
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 237 NRFIGEIPQSLS 248
            R     P    
Sbjct: 579 ERMECATPSDKQ 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (291), Expect = 5e-29
 Identities = 67/314 (21%), Positives = 108/314 (34%), Gaps = 14/314 (4%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
             + +  L +  N     +  E       LK L   +NE+     ++ +       L  L
Sbjct: 47  RYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT---NLTEL 102

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG- 119
            L S     +        Q +L  + LSH  ++             L+ L L N+ I   
Sbjct: 103 HLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQAL 160

Query: 120 -PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG--- 175
               L I  +  L+ L++S+N  +   P      +  LF   ++   L  S+        
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 176 NMNFLRILDLSSNQLTGEIPERLA-VGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL 234
               +R L LS++QL+         +   NL  L LS NNL          L  L    L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294
           E N        SL    ++  L L  +  +  ++    L       F  L  L  L++ D
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRS-FTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 295 NNISGSLPSCFHPL 308
           N+I G   + F  L
Sbjct: 339 NDIPGIKSNMFTGL 352

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (287), Expect = 2e-28
 Identities = 68/337 (20%), Positives = 116/337 (34%), Gaps = 42/337 (12%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQS 59
             T++ EL+L +N  Q   +  P      L  L   +N + +    +   L      LQ 
Sbjct: 95  FCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLGTQVQLE----NLQE 149

Query: 60  LLLSSGYGDGVTFPKF-LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL----IN 114
           LLLS+     +   +  ++    L+ + LS  ++    P        +L  LFL    + 
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLG 208

Query: 115 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-LPSLFSFNISTNALHGSIPSS 173
            S+     L +  +  +R L +SN+            +   +L   ++S N L+     S
Sbjct: 209 PSLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 174 FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF--------- 224
           F  +  L    L  N +       L  G  N+ +L L  +  K  +   +          
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 225 NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPK-------------- 270
            L  L  L +EDN   G      +   +L+ L L+N+  S  T+                
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 271 ----NHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
               N +       F  L  L +LD+  N I   L  
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 8e-28
 Identities = 61/316 (19%), Positives = 111/316 (35%), Gaps = 36/316 (11%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQ 58
             TSI  L LSN+       +       + L  L    N +     +S   L     QL+
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP----QLE 275

Query: 59  SLLLS--------SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL 110
              L         S    G+   ++L  +       +S   +     ++  +    LE L
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLEHL 334

Query: 111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVE---IGDILPSLFSFNISTNALH 167
            + ++ I G           L++L +SN+            +      L   N++ N + 
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 168 GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNF 224
                +F  +  L +LDL  N++  E+  +   G  N+  + LS N       + F    
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA--- 451

Query: 225 NLANLRQLQLEDNRF--IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFC 282
            + +L++L L       +   P       +L  L L+NN++++I                
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI----------NDDMLE 501

Query: 283 QLYSLHILDISDNNIS 298
            L  L ILD+  NN++
Sbjct: 502 GLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (281), Expect = 1e-27
 Identities = 62/316 (19%), Positives = 110/316 (34%), Gaps = 32/316 (10%)

Query: 3   TSIEELYLSNNHF-QIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQSL 60
            S E    S+    Q+P  L      + +  L   +N+++     +    +    QL SL
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP-----TNITVLNLTHNQLRRLPAANFTRYS----QLTSL 54

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            +       +  P+       L+ ++L H +++    +        L  L L+++SI   
Sbjct: 55  DVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKI 112

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF- 179
              P    + L  LD+S+N             L +L    +S N +              
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANS 171

Query: 180 -LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM---FCRNFNLANLRQLQLE 235
            L+ L+LSSNQ+    P         L  L L+N  L   +    C      ++R L L 
Sbjct: 172 SLKKLELSSNQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 236 DNRFIGEIPQSLS--KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDIS 293
           +++       +    K ++L  L L+ N+L+ +              F  L  L    + 
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV----------GNDSFAWLPQLEYFFLE 280

Query: 294 DNNISGSLPSCFHPLY 309
            NNI        H L+
Sbjct: 281 YNNIQHLFSHSLHGLF 296

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 5e-27
 Identities = 51/313 (16%), Positives = 90/313 (28%), Gaps = 22/313 (7%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTA-PNFQLQS 59
            L  +E L + +N     I          LK L   N+        + +  +  +  L  
Sbjct: 327 WLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L L+      +           LE + L   ++  +           +  ++L  +    
Sbjct: 386 LNLTKNKISKI-ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQG--HIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177
             R        L+ L +     +     P      L +L   ++S N +          +
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRNLTILDLSNNNIANINDDMLEGL 503

Query: 178 NFLRILDLSSNQLTGEIPERLAV-------GCVNLEFLALSNNNLKGHMFCRNFNLANLR 230
             L ILDL  N L                 G  +L  L L +N           +L  L+
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 231 QLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHIL 290
            + L  N          +   SL+ L L  N ++ +   K               +L  L
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV--EKKVFGPAFR-------NLTEL 614

Query: 291 DISDNNISGSLPS 303
           D+  N    +  S
Sbjct: 615 DMRFNPFDCTCES 627

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  115 bits (289), Expect = 9e-29
 Identities = 54/338 (15%), Positives = 103/338 (30%), Gaps = 45/338 (13%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT ++ L    +   +   L      +         + I+    +          L  L
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELT-PDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
           L  +   +    P     +  L+D  + ++     F +  ++   KL+ ++  N      
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 121 --------------FRLPIHPH-----RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161
                          +           + L  +++ N      +P  + D LP L S NI
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNI 522

Query: 162 STNALHG---------SIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSN 212
           + N              +         ++I  +  N L            V L  L   +
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 213 NNLKG-HMFCRNFNLANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLSDITMPK 270
           N ++    F        L  L+L+ N+ I EIP+   +    +EGL  ++N L  I    
Sbjct: 583 NKVRHLEAFG---TNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYI---- 634

Query: 271 NHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
                P       +Y +  +D S N I     +    +
Sbjct: 635 -----PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (269), Expect = 5e-26
 Identities = 57/322 (17%), Positives = 110/322 (34%), Gaps = 40/322 (12%)

Query: 1   HLTSIEELYLSNNHF-QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
               I+  Y+  N+  + P S   L    +L  L   +N+++  +    +      +L  
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASAS-LQKMVKLGLLDCVHNKVR-HLEAFGTNV----KLTD 599

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L L     + +    F      +E +  SH K+      +  ++   + ++    + IG 
Sbjct: 600 LKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 120 -----PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNAL-------H 167
                   +  +       + +S N  Q   P E+      + +  +S N +        
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 168 GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNFN 225
                ++ N   L  +DL  N+LT    +  A     L  + +S N           +  
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ 777

Query: 226 LANL---RQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFC 282
           L       Q   E NR + + P  ++ C SL  L + +N +  +   +            
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV--DEKLTP-------- 827

Query: 283 QLYSLHILDISDNNI-SGSLPS 303
               L+ILDI+DN   S  + S
Sbjct: 828 ---QLYILDIADNPNISIDVTS 846

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  106 bits (266), Expect = 9e-26
 Identities = 52/375 (13%), Positives = 107/375 (28%), Gaps = 82/375 (21%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNH------------------SRLKRLWAYNNEIKA 42
            LT ++ +Y +N+ F          +                     L  +  YN     
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 43  EITES-HSLTAPNFQLQSLLLSS--------GYGDGVTFPKFLYHQHDLEDVHLSHIKMN 93
           ++ +  + L     +LQSL ++            D             ++  ++ +  + 
Sbjct: 506 QLPDFLYDLP----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 94  GKFPNWLLENNAKLETLFLIN------DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV 147
               +  L+   KL  L  ++      ++ G           +L  L +  N  +  IP 
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTN--------VKLTDLKLDYNQIE-EIPE 612

Query: 148 EIGDILPSLFSFNISTNALHGSIPS--SFGNMNFLRILDLSSNQLTGEIPERLA----VG 201
           +       +     S N L   IP+  +  ++  +  +D S N++  E            
Sbjct: 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF-------IGEIPQSLSKCSSLE 254
            +N   + LS N ++          + +  + L +N         +     +      L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 255 GLYLNNNSLSDI-------TMPK--------NHLEGPIPVEFCQLYSLHILDI------S 293
            + L  N L+ +       T+P         N      P +      L    I       
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790

Query: 294 DNNISGSLPSCFHPL 308
            N I    P+     
Sbjct: 791 GNRILRQWPTGITTC 805

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (263), Expect = 2e-25
 Identities = 38/322 (11%), Positives = 84/322 (26%), Gaps = 38/322 (11%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +   +  L L+    +  +    +   + LK L    +                      
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSET---VSGRLFGDEELTPDMS 376

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
                         FL +   L    L    +N       ++ ++++        ++   
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 121 F-RLP--IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177
              +   I    +L+ +  +N+ F                  N      + +   S+ N+
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAV------DWEDANSDYAKQYENEELSWSNL 490

Query: 178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN---------FNLAN 228
             L  ++L +     ++P+ L      L+ L ++ N        +               
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 229 LRQLQLEDNRFIGEIPQS--LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYS 286
           ++   +  N  + E P S  L K   L  L   +N +  +              F     
Sbjct: 550 IQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE------------AFGTNVK 596

Query: 287 LHILDISDNNISGSLPSCFHPL 308
           L  L +  N I           
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFT 618

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 5e-20
 Identities = 51/289 (17%), Positives = 99/289 (34%), Gaps = 36/289 (12%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNH-SRLKRLWAYNNEIKA--EITESHSLTAPNFQ 56
               + +L L  N  + IP           +++ L   +N++K    I  + S+      
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDF---CAFTDQVEGLGFSHNKLKYIPNIFNAKSVY----V 645

Query: 57  LQSLLLS----SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL 112
           + S+  S       G  ++     Y   +   V LS+ ++   FP  L    + + T+ L
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIIL 704

Query: 113 -------INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-LPSLFSFNISTN 164
                  I ++   P          L  +D+  N     +  +     LP L + ++S N
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN 763

Query: 165 ALHGSIPSSFGNMNFLRILDL------SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGH 218
               S P+   N + L+   +        N++  + P  +   C +L  L + +N+++  
Sbjct: 764 CFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIRK- 820

Query: 219 MFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267
                     L  L + DN  I     S+          L  +   DI 
Sbjct: 821 --VDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.8 bits (207), Expect = 4e-18
 Identities = 21/212 (9%), Positives = 65/212 (30%), Gaps = 38/212 (17%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTG- 192
            +   + +     V++ +    +   +++     G +P + G +  L++L   ++  T  
Sbjct: 304 FNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 193 -----------------------EIPERLAVGCVNLEFLALSNNNLKGH---MFCRNFNL 226
                                     +        L    L  + +  +      +  + 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 227 ANLRQLQLED-NRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMP---------KNHLEGP 276
            +L+  Q+ +    I  I +++ + + L+ +Y  N+  +   +                 
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 277 IPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
             + +  L  L  +++ +      LP   + L
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 15/145 (10%), Positives = 34/145 (23%), Gaps = 12/145 (8%)

Query: 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF 220
           I        I            LD  + +                    L     +  + 
Sbjct: 259 IQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVD 318

Query: 221 CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVE 280
             N     +  L L      G +P ++ + + L+ L    +S +              + 
Sbjct: 319 LDN--NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSET----------VSGRLF 366

Query: 281 FCQLYSLHILDISDNNISGSLPSCF 305
             +  +  + +   + I       F
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMF 391

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  112 bits (283), Expect = 5e-28
 Identities = 57/314 (18%), Positives = 95/314 (30%), Gaps = 22/314 (7%)

Query: 1   HLTSIEELYLSNNHFQ--IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQ 58
               ++ L   NN         +  L   +    L    N    +I         +   Q
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGN----DIAGIEPGAFDSAVFQ 205

Query: 59  SLLLSSGYGDGVTFPKFLYHQ-HDLEDVHLSHIKMNGKFPNWLLEN-NAKLETLFLINDS 116
           SL         V F          L       +      P          +E++ L    
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGN 176
                    H    L+ LD++  +    +P  +   L +L    +S N        S  N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASN 323

Query: 177 MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN--FNLANLRQLQL 234
              L  L +  N    E+         NL  L LS+++++    C     NL++L+ L L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294
             N  +    ++  +C  LE L L    L                 F  L+ L +L++S 
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVK---------DAQSPFQNLHLLKVLNLSH 434

Query: 295 NNISGSLPSCFHPL 308
           + +  S    F  L
Sbjct: 435 SLLDISSEQLFDGL 448

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (268), Expect = 5e-26
 Identities = 61/308 (19%), Positives = 107/308 (34%), Gaps = 29/308 (9%)

Query: 1   HLTSIEELYLSNNHF-QIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQ 58
             + ++EL L+  H  ++P     L   S LK+L    N+ +     S  +       L 
Sbjct: 276 CFSGLQELDLTATHLSELP---SGLVGLSTLKKLVLSANKFENLCQISASNFP----SLT 328

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGK-FPNWLLENNAKLETLFLINDSI 117
            L +             L +  +L ++ LSH  +      N  L N + L++L L  +  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 118 GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177
                       +L  LD++    +          L  L   N+S + L  S    F  +
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 178 NFLRILDLSSNQLTGEIPERLAV--GCVNLEFLALSNNNLKG---HMFCRNFNLANLRQL 232
             L+ L+L  N       ++         LE L LS  +L     H F    +L  +  +
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMMNHV 505

Query: 233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDI 292
            L  NR      ++LS    +  L L +N +S I          +P     L     +++
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISII----------LPSLLPILSQQRTINL 554

Query: 293 SDNNISGS 300
             N +  +
Sbjct: 555 RQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (257), Expect = 2e-24
 Identities = 64/325 (19%), Positives = 110/325 (33%), Gaps = 30/325 (9%)

Query: 1   HLTSIEELYLSNNHF-QIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQ 58
            + S+      +     I  ++        ++ +    +      + + H  +     LQ
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS----GLQ 281

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLI-NDSI 117
            L L++ +      P  L     L+ + LS  K           N   L  L +  N   
Sbjct: 282 ELDLTATHL--SELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKR 338

Query: 118 GGPFRLPIHPHRRLRFLDVSNNNFQG-HIPVEIGDILPSLFSFNISTNALHGSIPSSFGN 176
                  +     LR LD+S+++ +           L  L S N+S N        +F  
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 177 MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQ 233
              L +LDL+  +L  +  +        L+ L LS++ L      +F     L  L+ L 
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD---GLPALQHLN 455

Query: 234 LEDNRFIGEIPQ---SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHIL 290
           L+ N F     Q   SL     LE L L+   LS I              F  L  ++ +
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI----------DQHAFTSLKMMNHV 505

Query: 291 DISDNNISGSLPSCFHPLYIKKVHL 315
           D+S N ++ S       L    ++L
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIYLNL 530

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 54/314 (17%), Positives = 99/314 (31%), Gaps = 28/314 (8%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQSL 60
             S E L  S N     I          L  L     +I     ++  S      +L +L
Sbjct: 32  PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH----RLDTL 86

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
           +L++     +     L     L+ +      ++       L N   LE+L+L ++ I   
Sbjct: 87  VLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSI 144

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSL--FSFNISTNALHGSIPSSFGNMN 178
                 P  +L+ LD  NN    ++  E    L      S N++ N +   I     +  
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSA 202

Query: 179 FLRILDLSSNQLTGEIPERLA-VGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQL 234
             + L+    Q    I + L      +L      + + +     +F     + ++  + L
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINL 261

Query: 235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294
           + + F      +    S L+ L L    LS+           +P     L +L  L +S 
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSE-----------LPSGLVGLSTLKKLVLSA 310

Query: 295 NNISGSLPSCFHPL 308
           N             
Sbjct: 311 NKFENLCQISASNF 324

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 9e-19
 Identities = 39/180 (21%), Positives = 57/180 (31%), Gaps = 21/180 (11%)

Query: 132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT 191
           +  +  N      IP   G +  S      S N L     ++F  +  L  LDL+  Q+ 
Sbjct: 15  KTYNCENLGLN-EIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 192 GEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSLS 248
             I E        L+ L L+ N L                L+ L              L 
Sbjct: 71  W-IHEDTFQSQHRLDTLVLTANPLIFMAETALS---GPKALKHLFFIQTGISSIDFIPLH 126

Query: 249 KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
              +LE LYL +N +S I +P          +      L +LD  +N I          L
Sbjct: 127 NQKTLESLYLGSNHISSIKLP----------KGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 20/190 (10%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
              L+ S N             L +L   +++   ++     +F + + L  L L++N L
Sbjct: 35  TECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSL 247
              + E    G   L+ L      +            N   L  L L  N          
Sbjct: 94  IF-MAETALSGPKALKHLFFIQTGISSIDFIPLH---NQKTLESLYLGSNHISSIKLPKG 149

Query: 248 SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHI--LDISDNNISGSLPSCF 305
                L+ L   NN++  ++            +   L       L+++ N+I+G  P  F
Sbjct: 150 FPTEKLKVLDFQNNAIHYLS----------KEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199

Query: 306 HPLYIKKVHL 315
                + ++ 
Sbjct: 200 DSAVFQSLNF 209

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 61/313 (19%), Positives = 104/313 (33%), Gaps = 22/313 (7%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L+++++L LS N F+    +    N   L  L    N  + E+         N  L+ L
Sbjct: 299 GLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLEN--LREL 355

Query: 61  LLSS-GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
            LS             L +   L+ ++LS+ +          +   +LE L L    +  
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKV 414

Query: 120 -PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSI---PSSFG 175
              + P      L+ L++S++        ++ D LP+L   N+  N          +S  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235
            +  L IL LS   L+  I +        +  + LS+N L         +      L L 
Sbjct: 474 TLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIYLNLA 531

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLS-DITMP---------KNHLEGPIPVEFCQLY 285
            N     +P  L   S    + L  N L    +              LE           
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPP 591

Query: 286 SLHILDISDNNIS 298
            L  + +SD  +S
Sbjct: 592 LLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 7e-18
 Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 19/220 (8%)

Query: 107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNAL 166
            E L    + +             L FLD++                  L +  ++ N L
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPL 93

Query: 167 HGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNL 226
                ++      L+ L      ++  I          LE L L +N++      + F  
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 227 ANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYL--NNNSLSDI---------------TMP 269
             L+ L  ++N       + +S       L L  N N ++ I                  
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 270 KNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLY 309
           +N L     ++   + SL +    D +     P+ F  L 
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  102 bits (257), Expect = 2e-24
 Identities = 60/312 (19%), Positives = 102/312 (32%), Gaps = 34/312 (10%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLL 62
            +I+E  L+  +      +      + +  +      I     +       +F+ QSL +
Sbjct: 261 VTIDEFRLTYTNDF-SDDIVKFHCLANVSAMSLAGVSI-----KYLEDVPKHFKWQSLSI 314

Query: 63  SSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL----INDSIG 118
                         +    L+ + L+  K +  F    L +   L  L L    ++ S  
Sbjct: 315 IRCQLKQFPTLDLPF----LKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSFSGC 367

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIP-SSFGNM 177
             +         LR LD+S N     I       L  L   +   + L      S+F ++
Sbjct: 368 CSYSDLGTNS--LRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLED 236
             L  LD+S      +       G  +L  L ++ N+ K +     F N  NL  L L  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 237 NRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN 296
            +              L+ L +++N+L  +              + QLYSL  LD S N 
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFL----------DSSHYNQLYSLSTLDCSFNR 532

Query: 297 ISGSLPSCFHPL 308
           I  S     H  
Sbjct: 533 IETSKGILQHFP 544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.0 bits (229), Expect = 7e-21
 Identities = 38/239 (15%), Positives = 72/239 (30%), Gaps = 7/239 (2%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L  ++ L L+ N   I            L  L    N +                L+ L
Sbjct: 326 DLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHL 381

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS  +   +          +L+ +   H  +          +  KL  L +   +    
Sbjct: 382 DLS--FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
           F         L  L ++ N+F+ +    +     +L   ++S   L       F  ++ L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           ++L++S N L             +L  L  S N ++           +L    L +N  
Sbjct: 500 QLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 46/302 (15%), Positives = 84/302 (27%), Gaps = 52/302 (17%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
                + L +        +   P  +   LK L    N+      +  +L      L  L
Sbjct: 305 KHFKWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNKGS-ISFKKVALP----SLSYL 355

Query: 61  LLS----SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS 116
            LS    S  G              L  + LS                       +++ +
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNS---LRHLDLSFNG------------------AIIMSAN 394

Query: 117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGN 176
             G           L+ LD  ++  +          L  L   +IS           F  
Sbjct: 395 FMGL--------EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 177 MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLED 236
           +  L  L ++ N         +     NL FL LS   L+   +     L  L+ L +  
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 237 NRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN 296
           N  +       ++  SL  L  + N +               +      SL   ++++N+
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETS----------KGILQHFPKSLAFFNLTNNS 556

Query: 297 IS 298
           ++
Sbjct: 557 VA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 8e-19
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 20/185 (10%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE 193
               +      +P    DI  S  + ++S N L      SF N + L+ LDLS  ++   
Sbjct: 16  YQCMDQKLS-KVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 194 IPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKC 250
             +    G  +L  L L+ N ++      F     L +L  L   + +        + + 
Sbjct: 72  EDKAWH-GLHHLSNLILTGNPIQSFSPGSFS---GLTSLENLVAVETKLASLESFPIGQL 127

Query: 251 SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYI 310
            +L+ L + +N +             +P  F  L +L  +D+S N I     +    L  
Sbjct: 128 ITLKKLNVAHNFIHSC---------KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 311 KKVHL 315
                
Sbjct: 179 NPQVN 183

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 52/310 (16%), Positives = 101/310 (32%), Gaps = 39/310 (12%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLL 62
           +S + + LS N  +I +      N S L+ L     EI+    ++               
Sbjct: 32  SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKA--------------- 75

Query: 63  SSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR 122
                         +  H L ++ L+   +   F          LE L  +   +     
Sbjct: 76  -------------WHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLES 121

Query: 123 LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182
            PI     L+ L+V++N             L +L   ++S N +     +    +     
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 183 ----LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDN 237
               LD+S N +     +      + L  L L  N    ++      NLA L   +L   
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297
            F  E    + + S +EG  L + ++ +  +   +      V+F  L ++  + ++  +I
Sbjct: 240 EFKDERNLEIFEPSIMEG--LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 298 SGSLPSCFHP 307
                   H 
Sbjct: 298 KYLEDVPKHF 307

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 15/189 (7%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
            + +D+S N  +        +    L   ++S   +      ++  ++ L  L L+ N +
Sbjct: 34  TKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIG-EIPQS 246
                     G  +LE L      L             L  L++L +  N     ++P  
Sbjct: 93  QS-FSPGSFSGLTSLENLVAVETKLASLESFPIG---QLITLKKLNVAHNFIHSCKLPAY 148

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306
            S  ++L  + L+ N +  I    N L+               LD+S N I       F 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTI--TVNDLQFL----RENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 307 PLYIKKVHL 315
            + + ++ L
Sbjct: 203 GIKLHELTL 211

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.9 bits (237), Expect = 2e-22
 Identities = 59/298 (19%), Positives = 114/298 (38%), Gaps = 37/298 (12%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +L  +  LY+  N      +L+ L N   L+ L+   + I  +I+   +LT    ++ SL
Sbjct: 86  NLVKLTNLYIGTNKITDISALQNLTN---LRELYLNEDNIS-DISPLANLT----KMYSL 137

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L + +   ++    L +   L  + ++  K+    P   + N   L +L L  + I   
Sbjct: 138 NLGANHN--LSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDI 192

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
              P+     L +     N      PV     +  L S  I  N +    P    N++ L
Sbjct: 193 --SPLASLTSLHYFTAYVNQITDITPVAN---MTRLNSLKIGNNKITDLSP--LANLSQL 245

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             L++ +NQ++      +      L+ L + +N +         NL+ L  L L +N+  
Sbjct: 246 TWLEIGTNQISD--INAVK-DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
            E  + +   ++L  L+L+ N ++DI                 L  +   D ++  I 
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIR------------PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 3e-21
 Identities = 70/303 (23%), Positives = 114/303 (37%), Gaps = 39/303 (12%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +LT++E L L+ N       + PL N  +L  L+   N+I  +I+   +LT     L+ L
Sbjct: 64  YLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT----NLREL 115

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L     D ++    L +   +  ++L             L N   L  L +    +   
Sbjct: 116 YL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV 170

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
              PI     L  L ++ N  +   P+     L SL  F    N +    P    NM  L
Sbjct: 171 T--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRF 239
             L + +N++T   P         L +L +  N +          +L  L+ L +  N+ 
Sbjct: 224 NSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQ- 276

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
           I +I   L+  S L  L+LNNN L +                  L +L  L +S N+I+ 
Sbjct: 277 ISDIS-VLNNLSQLNSLFLNNNQLGNE----------DMEVIGGLTNLTTLFLSQNHITD 325

Query: 300 SLP 302
             P
Sbjct: 326 IRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.5 bits (223), Expect = 1e-20
 Identities = 58/321 (18%), Positives = 112/321 (34%), Gaps = 43/321 (13%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L       L        ++ E L     + +L     ++   I     LT     L+ L
Sbjct: 20  DLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAGEKVA-SIQGIEYLT----NLEYL 71

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L+   G+ +T    L +   L ++++   K+        L+N   L  L+L  D+I   
Sbjct: 72  NLN---GNQITDISPLSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDI 125

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
              P+    ++  L++  N+    +   + + +  L    ++ + +    P    N+  L
Sbjct: 126 --SPLANLTKMYSLNLGANHNLSDLS-PLSN-MTGLNYLTVTESKVKDVTP--IANLTDL 179

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRF 239
             L L+ NQ+    P  LA    +L +     N +          N+  L  L++ +N+ 
Sbjct: 180 YSLSLNYNQIEDISP--LA-SLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKI 233

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDIT------------MPKNHLEGPIPVEFCQLYSL 287
               P  L+  S L  L +  N +SDI             +  N +          L  L
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQL 289

Query: 288 HILDISDNNISGSLPSCFHPL 308
           + L +++N +          L
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGL 310

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 39/293 (13%)

Query: 7   ELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGY 66
            L            + P  + +   R       +   +T+   L      +  L+++   
Sbjct: 4   TLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVTQEE-LE----SITKLVVA--- 52

Query: 67  GDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIH 126
           G+ V   + + +  +LE ++L+  ++    P   L N  KL  L++  + I       + 
Sbjct: 53  GEKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQ 107

Query: 127 PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS 186
               LR L ++ +N     P+     L  ++S N+  N    S  S   NM  L  L ++
Sbjct: 108 NLTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVT 163

Query: 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQS 246
            +++    P        +L  L+L+ N ++        +L +L       N+     P  
Sbjct: 164 ESKVKDVTP---IANLTDLYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITDITP-- 216

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
           ++  + L  L + NN ++D++                L  L  L+I  N IS 
Sbjct: 217 VANMTRLNSLKIGNNKITDLS------------PLANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 43/213 (20%)

Query: 107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNAL 166
             TL  +   I   F              +   +    +  E    L S+    ++   +
Sbjct: 2   AATLATLPAPINQIFPDADLAE--GIRAVLQKASVTDVVTQEE---LESITKLVVAGEKV 56

Query: 167 HGSIPSSFGNMNFLRILDLSSNQLTGEIP-------ERLAV------------GCVNLEF 207
                     +  L  L+L+ NQ+T   P         L +               NL  
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRE 114

Query: 208 LALSNNNLKGHMFCRNF-NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266
           L L+ +N+          NL  +  L L  N  + ++   LS  + L  L +  + + D+
Sbjct: 115 LYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV 170

Query: 267 TMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
           T                L  L+ L ++ N I  
Sbjct: 171 T------------PIANLTDLYSLSLNYNQIED 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 26/164 (15%)

Query: 145 IPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLA 199
           +P  I  I     L       +   ++   +      +  +  L ++  ++   I     
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG--I 62

Query: 200 VGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLN 259
               NLE+L L+ N +       N  L  L  L +  N+       +L   ++L  LYLN
Sbjct: 63  EYLTNLEYLNLNGNQITDISPLSN--LVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 260 NNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
            +++SDI+                L  ++ L++  N+    L  
Sbjct: 119 EDNISDIS------------PLANLTKMYSLNLGANHNLSDLSP 150

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 40/229 (17%), Positives = 69/229 (30%), Gaps = 27/229 (11%)

Query: 87  LSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHI 145
             +   N     W   N+   +       ++      L          L++ +       
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96

Query: 146 PVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNL 205
           P +    L  L    I    L   +P +      L  L L+ N L   +P  +A     L
Sbjct: 97  PDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRL 152

Query: 206 EFLALSNNNL---------KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGL 256
             L++                     +  L NL+ L+LE    I  +P S++   +L+ L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211

Query: 257 YLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
            + N+ LS +                 L  L  LD+       + P  F
Sbjct: 212 KIRNSPLSAL-----------GPAIHHLPKLEELDLRGCTALRNYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 54/324 (16%), Positives = 104/324 (32%), Gaps = 49/324 (15%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNH-SRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
           H +  E LY   +      +L P  +  S+ +R +  +           +          
Sbjct: 10  HSSGRENLYFQGST-----ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQ 59

Query: 60  LLLSSGYGDGVTFPKFLYH--QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI 117
           +   +G          L    Q     + L  + +  +FP+      + L+ + +    +
Sbjct: 60  IETRTGRAL-KATADLLEDATQPGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGL 116

Query: 118 GGPFRLP--IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
                LP  +     L  L ++ N  +  +P  I   L  L   +I        +P    
Sbjct: 117 M---ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLA 171

Query: 176 NMNF---------LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNF 224
           + +          L+ L L    +   +P  +A    NL+ L + N+ L           
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSALGPAIH--- 226

Query: 225 NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL 284
           +L  L +L L     +   P      + L+ L L +          ++L   +P++  +L
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC---------SNLLT-LPLDIHRL 276

Query: 285 YSLHILDISDNNISGSLPSCFHPL 308
             L  LD+        LPS    L
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQL 300

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 38/266 (14%), Positives = 85/266 (31%), Gaps = 55/266 (20%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
            L+ ++ + +       +P +++       L+ L    N                  L++
Sbjct: 102 RLSHLQHMTIDAAGLMELPDTMQQFAG---LETLTLARN-----------------PLRA 141

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L            P  +   + L ++ +       + P  L   +A  E   L+N     
Sbjct: 142 L------------PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN----- 184

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                      L+ L +     +  +P  I + L +L S  I  + L  ++  +  ++  
Sbjct: 185 -----------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPK 230

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNR 238
           L  LDL         P     G   L+ L L + +        +   L  L +L L    
Sbjct: 231 LEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 239 FIGEIPQSLSKCSSLEGLYLNNNSLS 264
            +  +P  +++  +   + +  +  +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQA 314

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.9 bits (226), Expect = 1e-20
 Identities = 63/316 (19%), Positives = 108/316 (34%), Gaps = 28/316 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIK-----AEITESHSLTAPNF 55
               + +L L NN   + +    +   + L+       E +      +  +S      N 
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 56  QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIND 115
            ++   L+                 ++    L  + +           N   + L L+N 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNC 314

Query: 116 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH--GSIPSS 173
                 + P    + L+ L  ++N    +   E+   LPSL   ++S N L   G    S
Sbjct: 315 KF---GQFPTLKLKSLKRLTFTSNKGG-NAFSEVD--LPSLEFLDLSRNGLSFKGCCSQS 368

Query: 174 FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQL 232
                 L+ LDLS N +   +      G   LE L   ++NLK       F +L NL  L
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDI 292
            +             +  SSLE L +  NS  +  +P           F +L +L  LD+
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------FTELRNLTFLDL 477

Query: 293 SDNNISGSLPSCFHPL 308
           S   +    P+ F+ L
Sbjct: 478 SQCQLEQLSPTAFNSL 493

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 60/304 (19%), Positives = 104/304 (34%), Gaps = 29/304 (9%)

Query: 4   SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLS 63
           +IEE  L+   + +   ++     + +      +  I+          + NF  Q L L 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNFGWQHLELV 312

Query: 64  SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG--GPF 121
           +         K       L+ +  +  K    F    L +   LE L L  + +   G  
Sbjct: 313 NCKFGQFPTLKL----KSLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFKGCC 365

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMNFL 180
                    L++LD+S N     +       L  L   +   + L      S F ++  L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRF 239
             LD+S           +  G  +LE L ++ N+ + +     F  L NL  L L   + 
Sbjct: 424 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
               P + +  SSL+ L + +N L  +  P           F +L SL  + +  N    
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSV--PDGI--------FDRLTSLQKIWLHTNPWDC 532

Query: 300 SLPS 303
           S P 
Sbjct: 533 SCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 1e-16
 Identities = 38/190 (20%), Positives = 77/190 (40%), Gaps = 17/190 (8%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
            + LD+S N  + H+        P L   ++S   +      ++ +++ L  L L+ N +
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF-IGEIPQSLSK 249
              +      G  +L+ L     NL         +L  L++L +  N     ++P+  S 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 250 CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHI----LDISDNNISGSLPSCF 305
            ++LE L L++N +  I             +   L+ + +    LD+S N ++   P  F
Sbjct: 148 LTNLEHLDLSSNKIQSIY----------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 306 HPLYIKKVHL 315
             + + K+ L
Sbjct: 198 KEIRLHKLTL 207

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 9e-16
 Identities = 46/270 (17%), Positives = 91/270 (33%), Gaps = 24/270 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQ-LQS 59
            LT++    L +   +    ++    +   + L   N +                + L+ 
Sbjct: 280 CLTNVSSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKF-------GQFPTLKLKSLKR 329

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGK-FPNWLLENNAKLETLFL----IN 114
           L  +S  G        L     LE + LS   ++ K   +        L+ L L    + 
Sbjct: 330 LTFTSNKGGNAFSEVDLPS---LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 115 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSF 174
                   L      +L  LD  ++N +      +   L +L   +IS      +    F
Sbjct: 387 TMSSNFLGLE-----QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL 234
             ++ L +L ++ N         +     NL FL LS   L+        +L++L+ L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264
             N+          + +SL+ ++L+ N   
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 151 DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL 210
           ++  S  + ++S N L      SF +   L++LDLS  ++   I +       +L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 211 SNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267
           + N ++      F     L++L++L   +          +    +L+ L + +N +    
Sbjct: 84  TGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF- 139

Query: 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
                    +P  F  L +L  LD+S N I     +    L
Sbjct: 140 --------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 51/323 (15%), Positives = 105/323 (32%), Gaps = 33/323 (10%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQSLL 61
            S + L LS N  +  +     F+   L+ L     EI+     +  SL+     L +L+
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS----HLSTLI 82

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG-GP 120
           L+      +           L+ +      +     N+ + +   L+ L + ++ I    
Sbjct: 83  LTGNPIQSLA-LGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSL----FSFNISTNALHGSIPSSFGN 176
                     L  LD+S+N  Q  I      +L  +     S ++S N ++   P +F  
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 177 MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFN---LANLRQLQ 233
           +  L  L L +N  +  + +    G   LE   L     +       F+   L  L  L 
Sbjct: 200 IR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 234 LEDNR------FIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSL 287
           +E+ R      ++ +I    +  +++    L + ++  +                    L
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---------KDFSYNFGWQHL 309

Query: 288 HILDISDNNISGSLPSCFHPLYI 310
            +++                L  
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTF 332

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.2 bits (224), Expect = 3e-20
 Identities = 57/340 (16%), Positives = 112/340 (32%), Gaps = 49/340 (14%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNH-SRLKRLWAYNNEIKAEITES-HSLTAPNFQLQ 58
           +L ++  L LS N  +  + L P F   + LK +   +N+I          L      L 
Sbjct: 121 NLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT--LS 177

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG 118
              L++          +    +   ++ L  +         +  N   ++     +++I 
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNFSNAIS 229

Query: 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEI--GDILPSLFSFNISTNALHGSIPSSFGN 176
                 +     +       +N +         G    S+   ++S   +       F  
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 177 MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLE 235
           +  L++L+L+ N++  +I +    G  NL+ L LS N L   ++  NF  L  +  + L+
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQ 346

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMP-------------------------- 269
            N       Q+      L+ L L +N+L+ I                             
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 270 ---KNHLEG-PIPVEFCQLYSLHILDISDNNISGSLPSCF 305
              +N LE   I     ++  L IL ++ N  S       
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.1 bits (208), Expect = 4e-18
 Identities = 67/314 (21%), Positives = 113/314 (35%), Gaps = 36/314 (11%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSL 60
            +S+  L LS+      ++         LK L    N+I        + L      LQ L
Sbjct: 265 RSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD----NLQVL 319

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS      + +    Y    +  + L    +     +   +   KL+TL L ++++   
Sbjct: 320 NLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTT- 376

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHG-SIPSSFGNMNF 179
               IH    +  + +S N       V +  I  +    ++S N L    I      +  
Sbjct: 377 ----IHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN-----FNLANLRQLQL 234
           L+IL L+ N+ +    ++      +LE L L  N L+              L++L+ L L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294
             N      P   S  ++L GL LN+N L+ ++                  +L ILDIS 
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS------------HNDLPANLEILDISR 535

Query: 295 NNISGSLPSCFHPL 308
           N +    P  F  L
Sbjct: 536 NQLLAPNPDVFVSL 549

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 22/186 (11%)

Query: 132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT 191
           R       N    +P     +L +     +S N +     SSF  +  L++L+L S    
Sbjct: 7   RIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 192 GEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEI--PQS 246
             I +       NL  L L ++ +       F     L +L +L+L        +     
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ---GLFHLFELRLYFCGLSDAVLKDGY 118

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306
                +L  L L+ N +  +          +   F +L SL  +D S N I         
Sbjct: 119 FRNLKALTRLDLSKNQIRSL---------YLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169

Query: 307 PLYIKK 312
           PL  K 
Sbjct: 170 PLQGKT 175

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 55/324 (16%), Positives = 108/324 (33%), Gaps = 46/324 (14%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES--HSLTAPNFQLQ 58
            L + E L LS N+ +  ++        +L+ L   +      I +    +L      L+
Sbjct: 22  VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP----NLR 76

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKM-NGKFPNWLLENNAKLETLFLINDSI 117
            L L S     +  P        L ++ L    + +    +    N   L  L L  + I
Sbjct: 77  ILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 118 GG-PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL--PSLFSFNISTNALHGSIPSSF 174
                         L+ +D S+N     +     + L   +L  F+++ N+L+  +   +
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 175 GNMN------FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLAN 228
           G          L ILD+S N  T +I    +      +  +L   +             +
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH-------------H 241

Query: 229 LRQLQLEDNRFIGEIPQSL---SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLY 285
           +       +  I +  Q+       SS+  L L++  +  +              F  L 
Sbjct: 242 IMGAGFGFHN-IKDPDQNTFAGLARSSVRHLDLSHGFVFSLN----------SRVFETLK 290

Query: 286 SLHILDISDNNISGSLPSCFHPLY 309
            L +L+++ N I+      F+ L 
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLD 314

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 52/292 (17%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            + SI +++LS N                                   +L   N     +
Sbjct: 379 FIPSIPDIFLSGNKL--------------------------------VTLPKINLTANLI 406

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS    + +    FL     L+ + L+  + +    +     N  LE LFL  + +   
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 121 FRLPIHPH-----RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
           +   +          L+ L +++N     +P  +   L +L   ++++N L     +   
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235
               L ILD+S NQL    P+          F++LS  ++  + F     L+        
Sbjct: 526 AN--LEILDISRNQLLAPNPD---------VFVSLSVLDITHNKFICECELSTFINWLNH 574

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSL 287
            N  I   P  +  C   +    +  SL  ++      E  +      L+ +
Sbjct: 575 TNVTIAGPPADI-YCVYPD--SFSGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 20/192 (10%)

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
            +P       R LD+  N  +  +  +     P L    ++ N +    P +F N+  LR
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNR 238
            L L SN+L   IP  +  G  NL  L +S N +     +MF    +L NL+ L++ DN 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 239 FIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297
            +  I  ++ S  +SLE L L   +L+ I                 L+ L +L +   NI
Sbjct: 140 -LVYISHRAFSGLNSLEQLTLEKCNLTSIP----------TEALSHLHGLIVLRLRHLNI 188

Query: 298 SGSLPSCFHPLY 309
           +      F  LY
Sbjct: 189 NAIRDYSFKRLY 200

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.9 bits (218), Expect = 1e-19
 Identities = 60/326 (18%), Positives = 116/326 (35%), Gaps = 43/326 (13%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQ----LQ 58
           T    L L  N  +  ++ +   +   L+ L    N +        ++    F     L+
Sbjct: 32  TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIV-------SAVEPGAFNNLFNLR 83

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI- 117
           +L L S     +          +L  + +S  K+     +++ ++   L++L + ++ + 
Sbjct: 84  TLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 118 ---GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSF 174
                 F         L  L +   N    IP E    L  L    +    ++     SF
Sbjct: 142 YISHRAFS----GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQ 231
             +  L++L++S       +      G  NL  L++++ NL            +L  LR 
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAV---RHLVYLRF 252

Query: 232 LQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHIL 290
           L L  N  I  I    L +   L+ + L    L+ +           P  F  L  L +L
Sbjct: 253 LNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVE----------PYAFRGLNYLRVL 301

Query: 291 DISDNNISGSLPSCFHPLY-IKKVHL 315
           ++S N ++    S FH +  ++ + L
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLIL 327

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 54/275 (19%)

Query: 1   HLTSIEELYLSNNHFQIPISLEP-LFNH-SRLKRLWAYNNEIKAEITESHSLTAPNFQ-- 56
            L+++ +L +S N       L   +F     LK L   +N++         ++   F   
Sbjct: 102 GLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLV-------YISHRAFSGL 151

Query: 57  --LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIN 114
             L+ L                     LE  +L+ I      P   L +   L  L L +
Sbjct: 152 NSLEQL--------------------TLEKCNLTSI------PTEALSHLHGLIVLRLRH 185

Query: 115 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-S 173
            +I            RL+ L++S+  +   +         +L S +I+   L  ++P  +
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLT-AVPYLA 243

Query: 174 FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLR 230
             ++ +LR L+LS N ++  I   +    + L+ + L    L     + F     L  LR
Sbjct: 244 VRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAF---RGLNYLR 299

Query: 231 QLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLS 264
            L +  N+ +  + +S+     +LE L L++N L+
Sbjct: 300 VLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 47/299 (15%), Positives = 86/299 (28%), Gaps = 57/299 (19%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQS 59
           +    +   ++++  +         +   +K L    N +           T    +L+ 
Sbjct: 8   NGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFT----KLEL 62

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L LSS                      L             LE+ + L TL L N+ +  
Sbjct: 63  LNLSSN--------------------VLYETLD--------LESLSTLRTLDLNNNYVQE 94

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                +     +  L  +NNN    +            +  ++ N +        G  + 
Sbjct: 95  -----LLVGPSIETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           ++ LDL  N++       LA     LE L L  N +           A L+ L L  N+ 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNK- 202

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
           +  +       + +  + L NN L             I        +L   D+  N   
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVL-----------IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 148 EIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEF 207
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 208 LALSNNNLKGHMFCRNF-NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266
           L LS+N L       +  +L+ LR L L +N       Q L    S+E L+  NN++S +
Sbjct: 63  LNLSSNVLYET---LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRV 114

Query: 267 TMPK-----------NHLEGPIPVEFCQLYSLHILDISDNNIS 298
           +  +           N +     ++      +  LD+  N I 
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 37/249 (14%), Positives = 83/249 (33%), Gaps = 25/249 (10%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQ-LQS 59
            L+++  L L+NN+      ++ L     ++ L A NN I         ++    Q  ++
Sbjct: 78  SLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNIS-------RVSCSRGQGKKN 124

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           + L++     +        +  ++ + L   +++      L  ++  LE L L  + I  
Sbjct: 125 IYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-- 181

Query: 120 PFRLPIH-PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
            + +       +L+ LD+S+N     +  E       +   ++  N L   I  +     
Sbjct: 182 -YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR 238
            L   DL  N                ++ +A         +  +N     +  L      
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAY 294

Query: 239 FIGEIPQSL 247
              ++P   
Sbjct: 295 CCEDLPAPF 303

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 75/302 (24%), Positives = 118/302 (39%), Gaps = 41/302 (13%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +LT++  L L NN       ++PL N + L RL   +N I  +I+    LT     LQ L
Sbjct: 110 NLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTIS-DISALSGLT----SLQQL 161

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
                  + VT  K L +   LE + +S  K++       L     LE+L   N+ I   
Sbjct: 162 SFG----NQVTDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDI 214

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
              P+     L  L ++ N  +      +   L +L   +++ N +    P     +  L
Sbjct: 215 T--PLGILTNLDELSLNGNQLKD--IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             L L +NQ++   P     G   L  L L+ N L+        NL NL  L L  N   
Sbjct: 268 TELKLGANQISNISPLA---GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNIS 322

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGS 300
              P  +S  + L+ L+  NN +SD++                L +++ L    N IS  
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVS------------SLANLTNINWLSAGHNQISDL 368

Query: 301 LP 302
            P
Sbjct: 369 TP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 63/310 (20%), Positives = 117/310 (37%), Gaps = 41/310 (13%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +LT++  L LS+N       +  L   + L++L   N     ++    +LT     L+ L
Sbjct: 132 NLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQ--VTDLKPLANLT----TLERL 182

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            +SS     V+    L    +LE +  ++ +++   P   L     L+ L L  + +   
Sbjct: 183 DISSNK---VSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI 236

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
               +     L  LD++NN      P+     L  L    +  N +    P     +  L
Sbjct: 237 --GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNISP--LAGLTAL 289

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             L+L+ NQL    P        NL +L L  NN+         +L  L++L   +N+  
Sbjct: 290 TNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKV- 343

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGS 300
                SL+  +++  L   +N +SD+T                L  +  L ++D   + +
Sbjct: 344 -SDVSSLANLTNINWLSAGHNQISDLT------------PLANLTRITQLGLNDQAWTNA 390

Query: 301 LPSCFHPLYI 310
             +    + I
Sbjct: 391 PVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 60/298 (20%), Positives = 107/298 (35%), Gaps = 38/298 (12%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +LT++E L +S+N       +  L   + L+ L A NN+I  +IT    LT     L  L
Sbjct: 175 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQIS-DITPLGILT----NLDEL 226

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L+      +     L    +L D+ L++ +++   P   L    KL  L L  + I   
Sbjct: 227 SLNGNQ---LKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNI 280

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
              P+     L  L+++ N  +   P+     L +L    +  N +    P    ++  L
Sbjct: 281 S--PLAGLTALTNLELNENQLEDISPISN---LKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
           + L   +N+++            N+ +L+  +N +         NL  + QL L D  + 
Sbjct: 334 QRLFFYNNKVSDVSSLA---NLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWT 388

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
                  +  S    +     +L              P       S    DI+ N  S
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALI------------APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 72/314 (22%), Positives = 126/314 (40%), Gaps = 43/314 (13%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L  +  L       +   S++ +   + L ++   NN++  +IT   +LT    +L  +
Sbjct: 44  DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLT-DITPLKNLT----KLVDI 95

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
           L+++     +     L +  +L  + L + ++    P   L+N   L  L L +++I   
Sbjct: 96  LMNNNQ---IADITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI 149

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
               +     L+ L    N      P+     L +L   +IS+N +  S  S    +  L
Sbjct: 150 --SALSGLTSLQQLSFG-NQVTDLKPLA---NLTTLERLDISSNKV--SDISVLAKLTNL 201

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             L  ++NQ++   P        NL+ L+L+ N LK        +L NL  L L +N+  
Sbjct: 202 ESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDIT------------MPKNHLEGPIPVEFCQLYSLH 288
              P  LS  + L  L L  N +S+I+            + +N LE   P     L +L 
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 289 ILDISDNNISGSLP 302
            L +  NNIS   P
Sbjct: 313 YLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.8 bits (182), Expect = 6e-15
 Identities = 59/305 (19%), Positives = 107/305 (35%), Gaps = 43/305 (14%)

Query: 7   ELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGY 66
                +        +      +   +       +   ++++  L     Q+ +L      
Sbjct: 6   ATITQDTPIN---QIFTDTALAEKMKTVLGKTNVTDTVSQTD-LD----QVTTLQADR-- 55

Query: 67  GDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIH 126
             G+     + + ++L  ++ S+ ++    P   L+N  KL  + + N+ I      P+ 
Sbjct: 56  -LGIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADIT--PLA 109

Query: 127 PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS 186
               L  L + NN      P++    L +L    +S+N +  S  S+   +  L+ L   
Sbjct: 110 NLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTI--SDISALSGLTSLQQLSF- 163

Query: 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQS 246
            NQ+T   P         LE L +S+N +          L NL  L   +N+     P  
Sbjct: 164 GNQVTDLKPLA---NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP-- 216

Query: 247 LSKCSSLEGLYLNNNSLSDIT------------MPKNHLEGPIPVEFCQLYSLHILDISD 294
           L   ++L+ L LN N L DI             +  N +    P     L  L  L +  
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274

Query: 295 NNISG 299
           N IS 
Sbjct: 275 NQISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 40/247 (16%), Positives = 88/247 (35%), Gaps = 23/247 (9%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT++ +L L+NN      +L PL   ++L  L    N+I   I+    LT     L +L
Sbjct: 241 SLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQIS-NISPLAGLT----ALTNL 292

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L+    + +     + +  +L  + L    ++   P   + +  KL+ LF  N+ +   
Sbjct: 293 ELN---ENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV 346

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
               +     + +L   +N      P+     L  +    ++  A   +  +   N++  
Sbjct: 347 --SSLANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             +   +  L    P  ++    +     ++ N         ++  +    +      F 
Sbjct: 402 NTVKNVTGALI--APATIS-DGGSYTEPDITWNLPSYTNEV-SYTFSQPVTIGKGTTTFS 457

Query: 241 GEIPQSL 247
           G + Q L
Sbjct: 458 GTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 20/145 (13%)

Query: 155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNN 214
            L S  I+ +     I  +   +       L    +T  + +        +  L      
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLG 57

Query: 215 LKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLE 274
           +K         L NL Q+   +N+     P  L   + L  + +NNN ++DIT       
Sbjct: 58  IKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT------- 106

Query: 275 GPIPVEFCQLYSLHILDISDNNISG 299
                    L +L  L + +N I+ 
Sbjct: 107 -----PLANLTNLTGLTLFNNQITD 126

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.1 bits (213), Expect = 5e-19
 Identities = 50/274 (18%), Positives = 89/274 (32%), Gaps = 32/274 (11%)

Query: 26  NHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLED 84
           N +R K     ++ +K  +     S       ++ L LS      ++    L     LE 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW----NVKELDLSGNPLSQIS-AADLAPFTKLEL 62

Query: 85  VHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH 144
           ++LS   +        LE+ + L TL L N+ +       +     +  L  +NNN    
Sbjct: 63  LNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-R 113

Query: 145 IPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204
           +            +  ++ N +        G  + ++ LDL  N++       LA     
Sbjct: 114 VSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264
           LE L L  N +           A L+ L L  N+ +  +       + +  + L NN L 
Sbjct: 171 LEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 265 DITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
                       I        +L   D+  N   
Sbjct: 228 L-----------IEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 21/163 (12%)

Query: 148 EIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEF 207
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 208 LALSNNNLKGHMFCRNF-NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266
           L LS+N L       +  +L+ LR L L +N       Q L    S+E L+  NN++S +
Sbjct: 63  LNLSSNVLYET---LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRV 114

Query: 267 TMPK-----------NHLEGPIPVEFCQLYSLHILDISDNNIS 298
           +  +           N +     ++      +  LD+  N I 
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 45/326 (13%), Positives = 98/326 (30%), Gaps = 38/326 (11%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQ-LQS 59
            L+++  L L+NN+      ++ L     ++ L A NN I         ++    Q  ++
Sbjct: 78  SLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNIS-------RVSCSRGQGKKN 124

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           + L++     +        +  ++ + L   +++      L  ++  LE L L  + I  
Sbjct: 125 IYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-- 181

Query: 120 PFRLPIH-PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
            + +       +L+ LD+S+N     +  E       +   ++  N L   I  +     
Sbjct: 182 -YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL----------------KGHMFCR 222
            L   DL  N                ++ +A                       G   C 
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFC 282
           +       +L     +    +    S+   LE    N     +I   K      I     
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 283 QLYSLHILDISDNNISGSLPSCFHPL 308
           +  +   L+     +   + +     
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAH 383

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 23/199 (11%)

Query: 129 RRLRFLDVSNNNFQ-GHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187
            +L  L +S+N         +      SL   ++S N +  ++ S+F  +  L  LD   
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEI- 243
           + L       + +   NL +L +S+ + +     +F     L++L  L++  N F     
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNSFQENFL 167

Query: 244 PQSLSKCSSLEGLYLNNNSLSDIT--------------MPKNHLEGPIPVEFCQLYSLHI 289
           P   ++  +L  L L+   L  ++              M  N+        +  L SL +
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 290 LDISDNNISGSLPSCFHPL 308
           LD S N+I  S        
Sbjct: 228 LDYSLNHIMTSKKQELQHF 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 15/173 (8%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
            +L  LD  ++N +      +   L +L   +IS      +    F  ++ L +L ++ N
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
                    +     NL FL LS   L+      F    +L++L+ L +  N F      
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVLNMSHNNFFSLDTF 217

Query: 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
                +SL+ L  + N +      K  L+           SL  L+++ N+ +
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTS--KKQELQHF-------PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN--FNLANLRQLQLEDN 237
              L+L SN+L   +P  +      L  L+LS+N L     C    F   +L+ L L  N
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297
             +  +  +      LE L   +++L  +              F  L +L  LDIS  + 
Sbjct: 89  G-VITMSSNFLGLEQLEHLDFQHSNLKQM---------SEFSVFLSLRNLIYLDISHTHT 138

Query: 298 SGSLPSCFHPL 308
             +    F+ L
Sbjct: 139 RVAFNGIFNGL 149

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 7e-13
 Identities = 52/271 (19%), Positives = 85/271 (31%), Gaps = 66/271 (24%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
            LT + +L LS+N         +  F  + LK L    N +    +    L     QL+ 
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE----QLEH 105

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L                    D +  +L  +     F                       
Sbjct: 106 L--------------------DFQHSNLKQMSEFSVF----------------------- 122

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMN 178
                    R L +LD+S+ + +      I + L SL    ++ N+   +     F  + 
Sbjct: 123 ------LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLE 235
            L  LDLS  QL  ++         +L+ L +S+NN        +     L +L+ L   
Sbjct: 176 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY---KCLNSLQVLDYS 231

Query: 236 DNRFIGEIPQSL--SKCSSLEGLYLNNNSLS 264
            N  I    +       SSL  L L  N  +
Sbjct: 232 LNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 261

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 6e-18
 Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 2/182 (1%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
           + L+FL V        I       L SL    +  N        +F  +  L +L L+  
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113

Query: 189 QLTG-EIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRFIGEIPQS 246
            L G  +         +LE L L +NN+K       F N+     L L  N+      + 
Sbjct: 114 NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306
           L          L  +S++   M +  L         +  S+  LD+S N    S+   F 
Sbjct: 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 307 PL 308
             
Sbjct: 234 DA 235

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 60/311 (19%), Positives = 101/311 (32%), Gaps = 46/311 (14%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNH-SRLKRLWAYNNEIKAE-------ITESHSLTA 52
            LTS+E L L +N+ +  I     F +  R   L    N++K+            H    
Sbjct: 127 PLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 53  PNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWL--LENNAKLETL 110
               +    ++  +               +  + LS                   K+++L
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSI 170
            L N                  F D  N  F+G            + + ++S + +  ++
Sbjct: 245 ILSN------SYNMGSSFGHTNFKDPDNFTFKGLEA-------SGVKTCDLSKSKIF-AL 290

Query: 171 PS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNL 226
               F +   L  L L+ N++  +I +    G  +L  L LS N L      MF    NL
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---NL 346

Query: 227 ANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLY 285
             L  L L  N  I  +  QS     +L+ L L+ N L  +              F +L 
Sbjct: 347 DKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVP----------DGIFDRLT 395

Query: 286 SLHILDISDNN 296
           SL  + +  N 
Sbjct: 396 SLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 17/166 (10%)

Query: 148 EIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEF 207
           ++ ++   +   ++S N++     +SF  +  L+ L +        I      G  +L  
Sbjct: 24  QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83

Query: 208 LALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEI--PQSLSKCSSLEGLYLNNNS 262
           L L  N         F     LANL  L L      G +         +SLE L L +N+
Sbjct: 84  LKLDYNQFLQLETGAFN---GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 263 LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
           +  I         P    F  +   H+LD++ N +           
Sbjct: 141 IKKIQ--------PASF-FLNMRRFHVLDLTFNKVKSICEEDLLNF 177

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 60/337 (17%), Positives = 102/337 (30%), Gaps = 62/337 (18%)

Query: 3   TSIEELYLSNNHFQIPISLEP--LFNHSRLKRLWAYNNEIKAEITES--HSLTAPNFQLQ 58
             +  + LS N       L          L+ L          I  +    L+     L 
Sbjct: 30  AHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS----SLI 82

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKF-PNWLLENNAKLETLFLINDSI 117
            L L       +          +LE + L+   ++G        +    LE L L +++I
Sbjct: 83  ILKLDYNQFLQLE-TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 118 GGPFRLPIHPH------RRLRFLDVSNNNFQGHIPVEIGDILPSLF----------SFNI 161
                  I P       RR   LD++ N  +  I  E                     ++
Sbjct: 142 KK-----IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERL--AVGCVNLEFLALSNNNLKGHM 219
           +   L      +      +  LDLS N     + +R   A+    ++ L LSN+   G  
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 220 FCRN------------FNLANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDI 266
           F                  + ++   L  ++ I  +     S  + LE L L  N ++ I
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 267 TMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
                         F  L  L  L++S N +  S+ S
Sbjct: 315 D----------DNAFWGLTHLLKLNLSQNFLG-SIDS 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.6 bits (204), Expect = 9e-18
 Identities = 61/305 (20%), Positives = 105/305 (34%), Gaps = 47/305 (15%)

Query: 1   HLTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
               +  L +S N    +P+    L     L         + A  +    L     QL S
Sbjct: 79  LPPELRTLEVSGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 135

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L            P        L+++ +S  ++    P       ++L  L+  N+ +  
Sbjct: 136 L------------PVLPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT- 174

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
              LP+ P   L+ L VS+N     +P         L+      N L  S+P+       
Sbjct: 175 --SLPMLPSG-LQELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPSG--- 222

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           L+ L +S N+LT  +P   +     L+ L +S N L           + L  L +  N+ 
Sbjct: 223 LKELIVSGNRLT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQ- 272

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
           +  +P+SL   SS   + L  N LS+ T+         P     +    +   S    + 
Sbjct: 273 LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 300 SLPSC 304
           +L   
Sbjct: 333 ALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.7 bits (199), Expect = 4e-17
 Identities = 56/311 (18%), Positives = 99/311 (31%), Gaps = 72/311 (23%)

Query: 2   LTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIK---AEITESHSLTAPNFQL 57
              I  L + +N+   +P           L+ L    N++            L+  +  L
Sbjct: 60  PAHITTLVIPDNNLTSLPALP------PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL 113

Query: 58  QSL--LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIND 115
             L  L S                  L  + +   ++    P         L+ L + ++
Sbjct: 114 THLPALPSG-----------------LCKLWIFGNQLT-SLPVLP----PGLQELSVSDN 151

Query: 116 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
            +     LP  P   L  L   NN     +P+        L   ++S N L  S+P+   
Sbjct: 152 QLA---SLPALPS-ELCKLWAYNNQLT-SLPMLPS----GLQELSVSDNQLA-SLPTLPS 201

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235
               L  L   +N+LT  +P   +     L+ L +S N L           + L++L + 
Sbjct: 202 E---LYKLWAYNNRLT-SLPALPS----GLKELIVSGNRLT----SLPVLPSELKELMVS 249

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
            NR +  +P      S L  L +  N L+            +P     L S   +++  N
Sbjct: 250 GNR-LTSLPMLP---SGLLSLSVYRNQLTR-----------LPESLIHLSSETTVNLEGN 294

Query: 296 NISGSLPSCFH 306
            +S        
Sbjct: 295 PLS-ERTLQAL 304

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 7e-11
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF--NLANLRQLQLEDN 237
             +L++  + LT  +P+ L     ++  L + +NNL       +       LR L++  N
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT------SLPALPPELRTLEVSGN 91

Query: 238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDI-------TMPKNHLEGPIPVEFCQLYSLHIL 290
           + +  +P        L         L  +        +  N L   +PV    L     L
Sbjct: 92  Q-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPVLPPGLQE---L 146

Query: 291 DISDNNISGSLPSCFHPL 308
            +SDN ++ SLP+    L
Sbjct: 147 SVSDNQLA-SLPALPSEL 163

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 3e-17
 Identities = 44/323 (13%), Positives = 105/323 (32%), Gaps = 34/323 (10%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +LT+++ L + N      I        + L  L      ++         +  +    +L
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTL 179

Query: 61  ------LLSSGYGDGVTFPKFLYHQH-DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLI 113
                  L   + D ++  ++L  +  +L     S + ++                    
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 114 NDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-------LPSLFSFNISTNAL 166
            + +    R  I     + F D + N      P E   +         ++   +I    L
Sbjct: 240 FNELLKLLRY-ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 167 HGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-- 224
              + + +  +  ++ + + ++++   +P   +    +LEFL LS N +       +   
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 225 -NLANLRQLQLEDNRF--IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF 281
               +L+ L L  N    + +  + L    +L  L ++ N+             P+P   
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-----------PMPDSC 406

Query: 282 CQLYSLHILDISDNNISGSLPSC 304
                +  L++S   I   + +C
Sbjct: 407 QWPEKMRFLNLSSTGIR-VVKTC 428

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.4 bits (196), Expect = 1e-16
 Identities = 56/335 (16%), Positives = 108/335 (32%), Gaps = 35/335 (10%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            +  I  L L  +     +        S ++ L   +  +         +   +  ++ L
Sbjct: 170 SIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 61  LLSSGYGDGVTF---PKFLYHQHDLEDVHLSHIKMNG-----KFPNWLLENNAKLETLFL 112
                     +F    K L +  +L +V      +NG        + ++    K+ET+ +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288

Query: 113 INDSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH 167
               I   +             +++ + V N+     +P      L SL   ++S N + 
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

Query: 168 GSI---PSSFGNMNFLRILDLSSNQLTG-EIPERLAVGCVNLEFLALSNNNLKGHMFCRN 223
                  +  G    L+ L LS N L   +    + +   NL  L +S N     M    
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406

Query: 224 FNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMP----------KNHL 273
                +R L L     I  +   +    +LE L ++NN+L   ++           +N L
Sbjct: 407 QWPEKMRFLNLSSTG-IRVVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463

Query: 274 EGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
           +            L ++ IS N +       F  L
Sbjct: 464 KTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRL 496

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 45/316 (14%), Positives = 95/316 (30%), Gaps = 40/316 (12%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
             +++ L LS N     I    L   + L+ L   ++ I       +++    F      
Sbjct: 25  TAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRI-------NTIEGDAFY----- 71

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-P 120
                               LE + LS   ++    +      + L+ L L+ +      
Sbjct: 72  ----------------SLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
                     L+ L + N      I       L SL    I   +L      S  ++  +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF- 239
             L L  ++    + E  A    ++ +L L + NL    F           ++    R  
Sbjct: 175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 240 ------IGEIPQSLSKCSSLEGLYLNNNSLSDIT-MPKNHLEGPIPVEFCQLYSLHILDI 292
                   E+ + L     L  +  ++ +L+ +     +  +    +   +  ++  L I
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 293 SDNNISGSLPSCFHPL 308
               +   L + +  L
Sbjct: 294 PQFYLFYDLSTVYSLL 309

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 40/315 (12%), Positives = 95/315 (30%), Gaps = 32/315 (10%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
              +++ L L ++     I  +  ++   L+ L   +N +    + S S   P   L+ L
Sbjct: 48  ACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYL 103

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L       +       +  +L+ + + +++   +           L  L +   S+   
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
               +   R +  L +  +     +     DIL S+    +    L     S        
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 181 RILDLSSNQLTGEIPE------RLAVGCVNLEFLALSNNNLKGHMF-----------CRN 223
             +   + + +    E      +L    + L  +   +  L G                 
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 224 FNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQ 283
                +R+L +       ++    S    ++ + + N+ +  +                 
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS----------FSQH 332

Query: 284 LYSLHILDISDNNIS 298
           L SL  LD+S+N + 
Sbjct: 333 LKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.0 bits (182), Expect = 7e-15
 Identities = 49/313 (15%), Positives = 96/313 (30%), Gaps = 26/313 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +L   +   L  +    P+              +    ++   I E   +   +  L  L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
              +     V           +  +H+    +     + +     K++ + + N  +   
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIG--DILPSLFSFNISTNALH--GSIPSSFGN 176
                   + L FLD+S N                PSL +  +S N L            
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 177 MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLED 236
           +  L  LD+S N     +P+        + FL LS+  ++     +      L  L + +
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQ-WPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSN 440

Query: 237 NRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT------------MPKNHLEGPIPVEFCQL 284
           N  +      L     L+ LY++ N L  +             + +N L+      F +L
Sbjct: 441 NN-LDSFSLFLP---RLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRL 496

Query: 285 YSLHILDISDNNI 297
            SL  + +  N  
Sbjct: 497 TSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 41/242 (16%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L  ++ + + N+   + +      +   L+ L    N +  E  ++ +       LQ+L
Sbjct: 308 LLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
                                L   HL  ++  G+    +L     L +L +  ++   P
Sbjct: 367 --------------------VLSQNHLRSMQKTGE----ILLTLKNLTSLDISRNTFH-P 401

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
                    ++RFL++S+   +  +      I  +L   ++S N L  S          L
Sbjct: 402 MPDSCQWPEKMRFLNLSSTGIR-VVK---TCIPQTLEVLDVSNNNL-DSFSLFLPR---L 453

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF--NLANLRQLQLEDNR 238
           + L +S N+L   +P+  A     L  + +S N LK           L +L+++ L  N 
Sbjct: 454 QELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLK--SVPDGIFDRLTSLQKIWLHTNP 508

Query: 239 FI 240
           + 
Sbjct: 509 WD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 28/147 (19%), Positives = 41/147 (27%), Gaps = 35/147 (23%)

Query: 180 LRILDLSSNQLT--------------------GEIPERLAVGCVNLEFLALSNNNLK--- 216
             + D  S   T                      I       C NL+ L L ++ +    
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 217 GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGP 276
           G  F    +L +L  L L DN             SSL+ L L  N    +          
Sbjct: 67  GDAFY---SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL---------G 114

Query: 277 IPVEFCQLYSLHILDISDNNISGSLPS 303
           +   F  L +L  L I +      +  
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRR 141

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.7 bits (199), Expect = 4e-17
 Identities = 55/298 (18%), Positives = 112/298 (37%), Gaps = 36/298 (12%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +  +I++LY+  N  +  +      N   L  L    N++    +    +     +L +L
Sbjct: 97  YAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTL 152

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            +S+   + +           L+++ LS  ++       L+ +   L    +  + +   
Sbjct: 153 SMSNNNLERIE-DDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLST- 206

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
               +     +  LD S+N+    +    G +   L    +  N L  +  +   N   L
Sbjct: 207 ----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGL 256

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             +DLS N+L  +I     V    LE L +SNN L   +      +  L+ L L  N  +
Sbjct: 257 VEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-L 313

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
             + ++  +   LE LYL++NS+  +             +    ++L  L +S N+  
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTL-------------KLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 27/239 (11%)

Query: 82  LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF 141
           +E ++L+ +++  +   +       ++ L++  ++I             L  L +  N+ 
Sbjct: 77  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 142 QGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG 201
              +P  I    P L + ++S N L      +F     L+ L LSSN+LT  +   L   
Sbjct: 136 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--- 190

Query: 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261
             +L    +S N L             + +L    N  I  +   +     L  L L +N
Sbjct: 191 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHN 242

Query: 262 SLSDITMPK------------NHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
           +L+D                 N LE  +   F ++  L  L IS+N +  +L     P+
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 6e-17
 Identities = 39/172 (22%), Positives = 61/172 (35%), Gaps = 21/172 (12%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSS 187
             L  LD+S+N     +       L  L + ++    L   +    F  +  L+ L L  
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD 138

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIP 244
           N L   +P+       NL  L L  N +       F     L +L +L L  NR +  + 
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR---GLHSLDRLLLHQNR-VAHVH 193

Query: 245 Q-SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
             +      L  LYL  N+LS +                 L +L  L ++DN
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALP----------TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMNFLRILDLSS 187
           R L  L + +N     I       L  L   ++S NA   S+  + F  +  L  L L  
Sbjct: 56  RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIP 244
             L  E+   L  G   L++L L +N L+      F    +L NL  L L  NR I  +P
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFR---DLGNLTHLFLHGNR-ISSVP 169

Query: 245 Q-SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
           + +     SL+ L L+ N ++ +    +            L  L  L +  NN+S     
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHV--HPHAFRD--------LGRLMTLYLFANNLSALPTE 219

Query: 304 CFHPLY-IKKVHL 315
              PL  ++ + L
Sbjct: 220 ALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 19/182 (10%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
            + + +  N    H+P        +L    + +N L     ++F  +  L  LDLS N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIP-QS 246
              +      G   L  L L    L+     +F     LA L+ L L+DN  +  +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNA-LQALPDDT 148

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306
                +L  L+L+ N +S +              F  L+SL  L +  N ++   P  F 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVP----------ERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 307 PL 308
            L
Sbjct: 199 DL 200

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 42/186 (22%), Positives = 62/186 (33%), Gaps = 24/186 (12%)

Query: 128 HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187
           +             Q  +P     I  +     +  N +     +SF     L IL L S
Sbjct: 10  NEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNN----LKGHMFCRNFNLANLRQLQLEDNRFIGEI 243
           N L   I      G   LE L LS+N     +    F     L  L  L L+    + E+
Sbjct: 66  NVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATF---HGLGRLHTLHLDRCG-LQEL 120

Query: 244 PQ-SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
                   ++L+ LYL +N+L  +  P +            L +L  L +  N IS    
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQAL--PDDTFRD--------LGNLTHLFLHGNRISSVPE 170

Query: 303 SCFHPL 308
             F  L
Sbjct: 171 RAFRGL 176

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSS 187
            RL  L +     Q  +   +   L +L    +  NAL  ++P  +F ++  L  L L  
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIP 244
           N+++  +PER   G  +L+ L L  N +     H F    +L  L  L L  N  +  +P
Sbjct: 163 NRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAF---RDLGRLMTLYLFANN-LSALP 217

Query: 245 QS-LSKCSSLEGLYLNNNSL 263
              L+   +L+ L LN+N  
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 45/222 (20%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES--HSLTAPNFQLQ 58
              ++  L+L +N     I        + L++L   +N     +  +  H L     +L 
Sbjct: 54  ACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG----RLH 108

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI- 117
           +L                     L+   L  +         L    A L+ L+L ++++ 
Sbjct: 109 TL--------------------HLDRCGLQEL------GPGLFRGLAALQYLYLQDNALQ 142

Query: 118 ---GGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS 173
                 FR L       L  L +  N     +P      L SL    +  N +    P +
Sbjct: 143 ALPDDTFRDLG-----NLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 174 FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215
           F ++  L  L L +N L+  +P         L++L L++N  
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 9e-17
 Identities = 56/275 (20%), Positives = 80/275 (29%), Gaps = 21/275 (7%)

Query: 4   SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLS 63
           S+E L    +          +     LKRL      I + I            LQ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 64  SGYGDGVTFPKFLYHQH-DLEDVHLSHIKMNG------KFPNWLLENNAKLETLFLINDS 116
           +    G   P  L     DL  ++L ++          +   WL      L+ L +    
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG---LKVLSIAQAH 160

Query: 117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVE---IGDILPSLFSFNISTNALH---GSI 170
                   +     L  LD+S+N   G   +         P+L    +    +    G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 171 PSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLR 230
            +       L+ LDLS N L              L  L LS   LK          A L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---LPAKLS 277

Query: 231 QLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265
            L L  NR +   P    +   +  L L  N   D
Sbjct: 278 VLDLSYNR-LDRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 50/273 (18%), Positives = 81/273 (29%), Gaps = 28/273 (10%)

Query: 48  HSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLE--NNA 105
             L      L+ LL        +     +     L+ + +   ++  +     L     +
Sbjct: 36  VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95

Query: 106 KLETLFLINDSIGGPFRLPIHP--HRRLRFLDVSNNNFQG---HIPVEIGDILPSLFSFN 160
            L+ L L N  + G    P+       L  L++ N ++      +      + P L   +
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAV---GCVNLEFLALSNNNLK- 216
           I+                 L  LDLS N   GE     A+       L+ LAL N  ++ 
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 217 --GHMFCRNFNLANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHL 273
             G           L+ L L  N         S    S L  L L+   L  +       
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP------ 269

Query: 274 EGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306
                        L +LD+S N +    PS   
Sbjct: 270 -------KGLPAKLSVLDLSYNRLD-RNPSPDE 294

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 43/222 (19%), Positives = 64/222 (28%), Gaps = 37/222 (16%)

Query: 2   LTSIEELYLSNNHFQIPISLEPL---FNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQ 58
              +  L L N  +    +       +    LK L             S         L 
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL---NFSCEQVRVFPALS 176

Query: 59  SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIN---D 115
           +L LS                 +L +  L       KFP         L+ L L N   +
Sbjct: 177 TLDLS--------------DNPELGERGLISALCPLKFPT--------LQVLALRNAGME 214

Query: 116 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
           +  G          +L+ LD+S+N+ +        D    L S N+S   L         
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG 217
               L +LDLS N+L    P         +  L+L  N    
Sbjct: 275 K---LSVLDLSYNRLD-RNPSPD--ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 23/167 (13%)

Query: 159 FNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGH 218
           ++ + N L  +    +G    L  L    +           +  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 219 MFC---RNFNLANLRQLQLEDNRFIGEIPQSLSKC--SSLEGLYLNNNSLSD-------- 265
           +     R   ++ L++L LE+    G  P  L +     L  L L N S +         
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 266 ----------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
                     +++ + H       +     +L  LD+SDN   G   
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS- 187
             L  L++ +N     IP    + L  L    +  N +      +F  +  L  LDL   
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKG-HMFCRNFNLANLRQLQLEDNRFIGEIPQ- 245
            +L   I E    G  NL++L L   N+K          L  L +L++  N    EI   
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNH-FPEIRPG 236

Query: 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
           S    SSL+ L++ N+ +S I              F  L SL  L+++ NN+S      F
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIE----------RNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 306 HPL-YIKKVHL 315
            PL Y+ ++HL
Sbjct: 287 TPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 3e-14
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 55/272 (20%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES--HSLTAPNFQLQSL 60
           ++   L L  N+ Q+ I  +   +   L+ L    N I+ +I     + L      L +L
Sbjct: 75  SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLA----SLNTL 128

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI--- 117
                               +L D  L+ I      P+   E  +KL  L+L N+ I   
Sbjct: 129 --------------------ELFDNWLTVI------PSGAFEYLSKLRELWLRNNPIESI 162

Query: 118 -GGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
               F  +P      L  LD+       +I     + L +L   N+    +   +P +  
Sbjct: 163 PSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLT 215

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQL 232
            +  L  L++S N    EI      G  +L+ L + N+ +     + F     LA+L +L
Sbjct: 216 PLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAF---DGLASLVEL 271

Query: 233 QLEDNRFIGEIPQS-LSKCSSLEGLYLNNNSL 263
            L  N  +  +P    +    L  L+L++N  
Sbjct: 272 NLAHNN-LSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.3 bits (175), Expect = 5e-14
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 26/185 (14%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
            +   +  +       +P     I  +    N+  N +      +F +++ L +L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIP- 244
            +  +I      G  +L  L L +N L       F     L+ LR+L L +N  I  IP 
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAF---EYLSKLRELWLRNNP-IESIPS 164

Query: 245 QSLSKCSSLEGLYL-NNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
            + ++  SL  L L     L  I   +   EG        L++L  L++   NI   +P+
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYI--SEGAFEG--------LFNLKYLNLGMCNIK-DMPN 213

Query: 304 CFHPL 308
              PL
Sbjct: 214 -LTPL 217

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 44/194 (22%), Positives = 64/194 (32%), Gaps = 16/194 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNF----Q 56
            L S+  L L +N   + I        S+L+ LW  NN I        S+ +  F     
Sbjct: 121 GLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI-------ESIPSYAFNRVPS 172

Query: 57  LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS 116
           L  L L                  +L+ ++L    +    PN  L     LE L +  + 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNH 229

Query: 117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGN 176
                    H    L+ L V N+     I     D L SL   N++ N L       F  
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 177 MNFLRILDLSSNQL 190
           + +L  L L  N  
Sbjct: 289 LRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 5e-16
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 30/219 (13%)

Query: 106 KLETLFLINDSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160
            LE L L  + I       I          L  L++ +N     IP      L  L    
Sbjct: 89  HLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142

Query: 161 ISTNALHGSIPSSFGNMNFLRILDLSS-NQLTGEIPERLAVGCVNLEFLALSNNNLKG-H 218
           +  N +      +F  +  LR LDL    +L+  I E    G  NL +L L+  NL+   
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREIP 201

Query: 219 MFCRNFNLANLRQLQLEDNRFIGEIPQ-SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPI 277
                  L  L +L L  N  +  I   S      L+ L++  + +  I           
Sbjct: 202 NLT---PLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIE---------- 247

Query: 278 PVEFCQLYSLHILDISDNNISGSLPSCFHPL-YIKKVHL 315
              F  L SL  ++++ NN++      F PL +++++HL
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.5 bits (173), Expect = 8e-14
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 22/163 (13%)

Query: 151 DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL 210
            I  +    N+  N +     +SF ++  L IL LS N +   I      G  NL  L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 211 SNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYL-NNNSLSD 265
            +N L       F     L+ L++L L +N  I  IP  + ++  SL  L L     LS 
Sbjct: 120 FDNRLTTIPNGAF---VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 266 ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
           I   +   EG        L +L  L+++  N+   +P+   PL
Sbjct: 176 I--SEGAFEG--------LSNLRYLNLAMCNLR-EIPN-LTPL 206

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 49/269 (18%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQ-LQSLL 61
           T+   L L  N  QI I +    +   L+ L    N I+       ++    F  L +L 
Sbjct: 64  TNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIR-------TIEIGAFNGLANL- 114

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
                         L     L D  L+ I      PN      +KL+ L+L N+ I    
Sbjct: 115 ------------NTLE----LFDNRLTTI------PNGAFVYLSKLKELWLRNNPIE--- 149

Query: 122 RLPI---HPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN 178
            +P    +    LR LD+       +I     + L +L   N++   L   IP+    + 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI 207

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLE 235
            L  LDLS N L+  I      G ++L+ L +  + ++    + F    NL +L ++ L 
Sbjct: 208 KLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAF---DNLQSLVEINLA 263

Query: 236 DNRFIGEIPQS-LSKCSSLEGLYLNNNSL 263
            N  +  +P    +    LE ++L++N  
Sbjct: 264 HNN-LTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 46/224 (20%), Positives = 81/224 (36%), Gaps = 27/224 (12%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNF----Q 56
           HL  +E L LS NH +  I +      + L  L  ++N +        ++    F    +
Sbjct: 86  HLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLT-------TIPNGAFVYLSK 137

Query: 57  LQSLLLS----SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL 112
           L+ L L                 +     L  + L  +K          E  + L  L L
Sbjct: 138 LKELWLRNNPIESIPSYA--FNRIPS---LRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 113 INDSIGGPFRLP-IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIP 171
              ++     +P + P  +L  LD+S N+    I       L  L    +  + +     
Sbjct: 193 AMCNLR---EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIER 248

Query: 172 SSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215
           ++F N+  L  ++L+ N LT  +P  L     +LE + L +N  
Sbjct: 249 NAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 21/189 (11%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
           R+L+ L +S N+    IP    ++  SL    I  N +       F  +  +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ-SL 247
            L     E  A   + L +L +S   L      ++     L +L L+ N+ I  I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT--GIPKDL-PETLNELHLDHNK-IQAIELEDL 213

Query: 248 SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHP 307
            + S L  L L +N +  I                 L +L  L + +N +S  +P+    
Sbjct: 214 LRYSKLYRLGLGHNQIRMIE----------NGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 308 L-YIKKVHL 315
           L  ++ V+L
Sbjct: 263 LKLLQVVYL 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 47/310 (15%), Positives = 88/310 (28%), Gaps = 70/310 (22%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQ-LQS 59
            L  +  L L NN     I  +      +L++L+   N +         +       L  
Sbjct: 76  GLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLV-------EIPPNLPSSLVE 127

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           L                     + D  +  +      P  +      +  + +  + +  
Sbjct: 128 L--------------------RIHDNRIRKV------PKGVFSGLRNMNCIEMGGNPLE- 160

Query: 120 PFRLPIHP----HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SF 174
                  P      +L +L +S       IP    D+  +L   ++  N +  +I     
Sbjct: 161 --NSGFEPGAFDGLKLNYLRISEAKLT-GIPK---DLPETLNELHLDHNKIQ-AIELEDL 213

Query: 175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNFNLANLRQL 232
              + L  L L  NQ+   I          L  L L NN L           +L  L+ +
Sbjct: 214 LRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGL---PDLKLLQVV 269

Query: 233 QLEDNRFIGEIPQS-------LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLY 285
            L  N  I ++  +         K +   G+ L NN +    +         P  F  + 
Sbjct: 270 YLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ--------PATFRCVT 320

Query: 286 SLHILDISDN 295
               +   + 
Sbjct: 321 DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 45/256 (17%), Positives = 93/256 (36%), Gaps = 41/256 (16%)

Query: 80  HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN 139
             L  + L + K++ K          KL+ L++  + +     +P +    L  L + +N
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV---EIPPNLPSSLVELRIHDN 133

Query: 140 NFQGHIPVEIGDILPSLFSFNISTNALHGSI--PSSFGNMNFLRILDLSSNQLTG----- 192
             +  +P  +   L ++    +  N L  S   P +F  +  L  L +S  +LTG     
Sbjct: 134 RIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDL 191

Query: 193 ---------------EIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQL 234
                           I     +    L  L L +N ++            L  LR+L L
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL---SFLPTLRELHL 248

Query: 235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294
           ++N+ +  +P  L     L+ +YL+ N+++ +    N           +    + + + +
Sbjct: 249 DNNK-LSRVPAGLPDLKLLQVVYLHTNNITKV--GVNDFCPVGF--GVKRAYYNGISLFN 303

Query: 295 NNISGSL--PSCFHPL 308
           N +      P+ F  +
Sbjct: 304 NPVPYWEVQPATFRCV 319

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 34/172 (19%), Positives = 72/172 (41%), Gaps = 25/172 (14%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
           LR +  S+   +  +P    +I P     ++  N +       F  +  L  L L +N++
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIPQ-S 246
           + +I E+       L+ L +S N+L     ++       ++L +L++ DNR I ++P+  
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP------SSLVELRIHDNR-IRKVPKGV 142

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
            S   ++  + +  N L +        +G           L+ L IS+  ++
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL---------KLNYLRISEAKLT 185

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 45/251 (17%), Positives = 92/251 (36%), Gaps = 32/251 (12%)

Query: 1   HLTSIEELYLSNNHF-QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNF---- 55
            L  +++LY+S NH  +IP     L   S L  L  ++N I+        +    F    
Sbjct: 100 PLRKLQKLYISKNHLVEIP---PNLP--SSLVELRIHDNRIR-------KVPKGVFSGLR 147

Query: 56  QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIND 115
            +  + +     +   F    +    L  + +S  K+    P  L E    L  L L ++
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET---LNELHLDHN 203

Query: 116 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
            I       +  + +L  L + +N  +  I       LP+L   ++  N L   +P+   
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 176 NMNFLRILDLSSNQLTGEIPE------RLAVGCVNLEFLALSNNNLKGHMFCRN--FNLA 227
           ++  L+++ L +N +T ++           V       ++L NN +            + 
Sbjct: 262 DLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 228 NLRQLQLEDNR 238
           +   +Q  + +
Sbjct: 321 DRLAIQFGNYK 331

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 53/309 (17%), Positives = 107/309 (34%), Gaps = 47/309 (15%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES--HSLTAPNFQLQSL 60
                L L NN     I      N   L  L   NN+I ++I+      L     +L+ L
Sbjct: 52  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLV----KLERL 105

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS      +           L+++ +   ++  K    +     ++  + L  + +   
Sbjct: 106 YLSKNQLKELPEKMP----KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK-- 158

Query: 121 FRLPIHPH-----RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
               I        ++L ++ +++ N    IP     + PSL   ++  N +     +S  
Sbjct: 159 -SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ---GLPPSLTELHLDGNKITKVDAASLK 213

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNFNLANLRQLQ 233
            +N L  L LS N ++  +         +L  L L+NN L           +   ++ + 
Sbjct: 214 GLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGL---ADHKYIQVVY 269

Query: 234 LEDNRFIGEIPQS-------LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYS 286
           L +N  I  I  +        +K +S  G+ L +N +    +  +         F  +Y 
Sbjct: 270 LHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST--------FRCVYV 320

Query: 287 LHILDISDN 295
              + + + 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 25/196 (12%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
            +L  L +S N  +  +P     +  +L    +  N +     S F  +N + +++L +N
Sbjct: 100 VKLERLYLSKNQLK-ELP---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 189 QLT-GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP-QS 246
            L    I      G   L ++ +++ N+            +L +L L+ N+ I ++   S
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNK-ITKVDAAS 211

Query: 247 LSKCSSLEGLYLNNNSLSDI------TMPK--------NHLEGPIPVEFCQLYSLHILDI 292
           L   ++L  L L+ NS+S +        P         N L   +P        + ++ +
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 270

Query: 293 SDNNISGSLPSCFHPL 308
            +NNIS    + F P 
Sbjct: 271 HNNNISAIGSNDFCPP 286

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 20/182 (10%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
           + L  L + NN     I       L  L    +S N L             L+ L +  N
Sbjct: 76  KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHEN 131

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN--FNLANLRQLQLEDNRFIGEIPQS 246
           ++T ++ + +  G   +  + L  N LK           +  L  +++ D   I  IPQ 
Sbjct: 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG 189

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306
           L    SL  L+L+ N ++ +      L+G        L +L  L +S N+IS        
Sbjct: 190 L--PPSLTELHLDGNKITKV--DAASLKG--------LNNLAKLGLSFNSISAVDNGSLA 237

Query: 307 PL 308
             
Sbjct: 238 NT 239

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 24/172 (13%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
           LR +  S+   +  +P    D+ P     ++  N +       F N+  L  L L +N++
Sbjct: 33  LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIPQ-S 246
           + +I        V LE L LS N LK     M         L++L++ +N  I ++ +  
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMP------KTLQELRVHENE-ITKVRKSV 140

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
            +  + +  + L  N L    +     +G        +  L  + I+D NI+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQG--------MKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 40/256 (15%), Positives = 84/256 (32%), Gaps = 41/256 (16%)

Query: 1   HLTSIEELYLSNNHF-QIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNF---- 55
            L  +E LYLS N   ++P   E +     L+ L  + NEI         +    F    
Sbjct: 98  PLVKLERLYLSKNQLKELP---EKMP--KTLQELRVHENEIT-------KVRKSVFNGLN 145

Query: 56  QLQSLLLSS-GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIN 114
           Q+  + L +                  L  + ++   +    P  L  +   L  L L  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDG 201

Query: 115 DSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGS 169
           + I       +          L  L +S N+    +        P L   +++ N L   
Sbjct: 202 NKITK-----VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 170 IPSSFGNMNFLRILDLSSNQLT-----GEIPERLAVGCVNLEFLALSNNNLKGHMFCRN- 223
           +P    +  +++++ L +N ++        P        +   ++L +N ++      + 
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 224 -FNLANLRQLQLEDNR 238
              +     +QL + +
Sbjct: 315 FRCVYVRAAVQLGNYK 330

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 29/174 (16%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMNFLRILDL 185
           L ++ ++N N        + D+       ++    I+      +  +    ++ L  L +
Sbjct: 46  LTYITLANIN--------VTDLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRI 95

Query: 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
               +T +    L+ G  +L  L +S++     +  +   L  +  + L  N  I +I  
Sbjct: 96  MGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
            L     L+ L +  + + D                     L+ L      I G
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYR------------GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 19/141 (13%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMNFLRILDL 185
           ++ L ++N +          +      L +L    I    +      +   +  L +LD+
Sbjct: 68  IKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
           S +     I  ++      +  + LS N     +      L  L+ L ++ +  + +  +
Sbjct: 120 SHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG-VHDY-R 175

Query: 246 SLSKCSSLEGLYLNNNSLSDI 266
            +     L  LY  + ++   
Sbjct: 176 GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 18/147 (12%)

Query: 153 LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSN 212
           + SL    ++   +   + +     + ++ L +++   T   P  ++ G  NLE L +  
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--IS-GLSNLERLRIMG 97

Query: 213 NNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLN-NNSLSDITMPKN 271
            ++          L +L  L +  +     I   ++    +  + L+ N +++DI     
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---- 153

Query: 272 HLEGPIPVEFCQLYSLHILDISDNNIS 298
                       L  L  L+I  + + 
Sbjct: 154 --------PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 48/198 (24%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            + S+  + L+N +      L  +     +K L   N            L+     L+ L
Sbjct: 42  QMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT-NYNPISGLS----NLERL 93

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            +                  D+    + +           L     L  L + + +    
Sbjct: 94  RIMG---------------KDVTSDKIPN-----------LSGLTSLTLLDISHSAHDDS 127

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFG 175
               I+   ++  +D+S N         I DI     LP L S NI  + +H        
Sbjct: 128 ILTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHDY--RGIE 178

Query: 176 NMNFLRILDLSSNQLTGE 193
           +   L  L   S  + G+
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 39/136 (28%)

Query: 173 SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQL 232
           +   MN L  + L++  +T            +L  +                   N++ L
Sbjct: 39  TEAQMNSLTYITLANINVT------------DLTGIE---------------YAHNIKDL 71

Query: 233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDI 292
            + +          +S  S+LE L +    ++   +P              L SL +LDI
Sbjct: 72  TINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIP----------NLSGLTSLTLLDI 119

Query: 293 SDNNISGSLPSCFHPL 308
           S +    S+ +  + L
Sbjct: 120 SHSAHDDSILTKINTL 135

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 6e-14
 Identities = 44/166 (26%), Positives = 69/166 (41%), Gaps = 13/166 (7%)

Query: 105 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN 164
                L L  + +       + P+ RL  L++        + V     LP L + ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 165 ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFC 221
            L  S+P     +  L +LD+S N+LT  +P     G   L+ L L  N LK     +  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 222 RNFNLANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLSDI 266
                  L +L L +N  + E+P  L +   +L+ L L  NSL  I
Sbjct: 146 P---TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 21/156 (13%)

Query: 151 DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL 210
           D+       ++S N L+    ++      L  L+L   +LT ++   +      L  L L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDL 84

Query: 211 SNNNLKG--HMFCRNFNLANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLSDIT 267
           S+N L+    +      L  L  L +  NR +  +P         L+ LYL  N L  + 
Sbjct: 85  SHNQLQSLPLLGQ---TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTL- 139

Query: 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
                   P  +       L  L +++NN++  LP+
Sbjct: 140 --------PPGL-LTPTPKLEKLSLANNNLT-ELPA 165

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 7e-14
 Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 27/239 (11%)

Query: 82  LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF 141
           +E ++L+ +++  +   +       ++ L++  ++I             L  L +  N+ 
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 142 QGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG 201
              +P  I    P L + ++S N L      +F     L+ L LSSN+LT  +   L   
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--- 184

Query: 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261
             +L    +S N L             + +L    N  I  +   +     L  L L +N
Sbjct: 185 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQHN 236

Query: 262 SLSDITMPK------------NHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
           +L+D                 N LE  +   F ++  L  L IS+N +  +L     P+
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 56/264 (21%), Positives = 95/264 (35%), Gaps = 26/264 (9%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           ++  +  L L  N     +      N  +L  L   NN ++  I +          LQ+L
Sbjct: 115 NVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-RIEDD--TFQATTSLQNL 170

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LSS     V           L   ++S+  ++       L     +E L   ++SI   
Sbjct: 171 QLSSNRLTHVDLSLI----PSLFHANVSYNLLS------TLAIPIAVEELDASHNSIN-- 218

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
             +    +  L  L + +NN        +    P L   ++S N L   +   F  M  L
Sbjct: 219 -VVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             L +S+N+L   +          L+ L LS+N+L  H+         L  L L+ N  I
Sbjct: 275 ERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-I 330

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLS 264
             +  S     +L+ L L++N   
Sbjct: 331 VTLKLST--HHTLKNLTLSHNDWD 352

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 21/294 (7%)

Query: 9   YLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSS-GYG 67
               N  ++   L  L     L  +   + E   + +           ++ L + +    
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 68  DGVTFPKFLYHQHDLEDVHLSHIKMNG--KFPNWLLENNAKLETLFLINDSIGGPFRLPI 125
           + +   +F Y +  L+ + + H+K          L    A++    L          +  
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 126 HPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG---NMNFLRI 182
                  FL+ + N F      +    L  L +  +  N L  +         NM+ L  
Sbjct: 350 PSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLET 407

Query: 183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242
           LD+S N L     +R      ++  L LS+N L G +F        ++ L L +NR I  
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC--LPPKVKVLDLHNNR-IMS 464

Query: 243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN 296
           IP+ ++   +L+ L + +N L  +  P           F +L SL  + + DN 
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSV--PDGV--------FDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 58/346 (16%), Positives = 104/346 (30%), Gaps = 55/346 (15%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPL-FNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
           +LT +  L LS   F+    L+ L   H  L  +         +  E+ SL  PN  +  
Sbjct: 144 NLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN---NAKLETLFLINDS 116
           L+        V     +     L+  ++     N +     L        L  + L +  
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 117 IGGPFRLPIHP---HRRLRFLDVSNNNFQGHIPVEIGDI----LPSLFSFNISTNALHGS 169
                 + +      R + +L++ N      I  E        L SL   ++       S
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 170 IPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNN--------------NL 215
             + +     + I  LS +     I         +  FL  + N               L
Sbjct: 321 KEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 216 KGHMFCRN---------FNLANLRQLQLEDNRF----IGEIPQSLSKCSSLEGLYLNNNS 262
           +  +  RN             N+  L+  D            ++ +   S+  L L++N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 263 LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
           L+              V  C    + +LD+ +N I  S+P     L
Sbjct: 440 LTGS------------VFRCLPPKVKVLDLHNNRIM-SIPKDVTHL 472

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 48/321 (14%), Positives = 95/321 (29%), Gaps = 55/321 (17%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA--EITESHSLTAPNFQLQ 58
               +E L +S+N  Q  IS  P+ +   L+ L    N+        E  +LT    +L 
Sbjct: 98  FNQDLEYLDVSHNRLQN-ISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLT----KLT 149

Query: 59  SLLLS-----SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLI 113
            L LS           V          DL   H+      G+  +  + N   L  +F  
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG----GETESLQIPNTTVLHLVFHP 205

Query: 114 NDSIGGPFRLPIHPHRRLRFLDVS-NNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS 172
           N        + ++    L+  ++  N+     +   + ++       N++   +  +   
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 173 SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFN-----LA 227
           S     F                         +E+L + N  +   +    F      L 
Sbjct: 266 SVKLFQFFWP--------------------RPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 228 NLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSL 287
           +L    +++  F+       S  + +    L+ +    I M                 S 
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV----------CPPSPSSF 355

Query: 288 HILDISDNNISGSLPSCFHPL 308
             L+ + N  + S+      L
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTL 376

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
            + L +S N+    + +     L  L    +S N +       F     L  LD+S N+L
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRFIGEIPQSLSK 249
              I         +L  L LS N+      C+ F NL  L  L L   +   ++      
Sbjct: 113 Q-NISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVA 167

Query: 250 CSSLEGLYLNNNSLS 264
              L  + L+  S  
Sbjct: 168 HLHLSCILLDLVSYH 182

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS--FGNMNFLRILDLSSN 188
           L +LDVS+N  Q +I       + SL   ++S N     +P    FGN+  L  L LS+ 
Sbjct: 102 LEYLDVSHNRLQ-NISC---CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAA 156

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLS 248
           +        +A   ++   L L + ++KG     +  + N   L L  +       Q   
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 249 KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS-GSLPSCFHP 307
             ++L  L L+N  L+D    +         E  +  +L  + +     +       F  
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLM---TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 308 LYIKKVH 314
            + + V 
Sbjct: 273 FWPRPVE 279

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 51/323 (15%), Positives = 112/323 (34%), Gaps = 28/323 (8%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +++ ++ L LS  H +   S+ P+ + +  K L         +  +   L   N +   +
Sbjct: 113 NMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKE-DPEGLQDFNTESLHI 170

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK---MNGKFPNWLLENNAKLETLFLINDSI 117
           +  +           +    +LE  ++  +        F + L +     +   L  ++I
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 118 GGPFRLPIHP-----HRRLRFLDVSNNNFQGHIPVEIGDI----LPSLFSFNISTNALHG 168
              +   I       H  + +  +SN   QG +     D     L +L    + ++    
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 169 SIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLA 227
                +   + + I + + +     +             L  SNN L       N  +L 
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLT 348

Query: 228 NLRQLQLEDNRF--IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLY 285
            L  L L+ N+   + +I +  ++  SL+ L ++ NS+S      +              
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---------CSWTK 399

Query: 286 SLHILDISDNNISGSLPSCFHPL 308
           SL  L++S N ++ ++  C  P 
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPR 422

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 7e-13
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 18/229 (7%)

Query: 72  FPKFLYHQHDLEDVHLSHIKMN--GKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHR 129
           F  F Y    L+ + +  +  +  G   +++ E  + +               L      
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324

Query: 130 RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH--GSIPSSFGNMNFLRILDLSS 187
               LD SNN        E    L  L +  +  N L     I      M  L+ LD+S 
Sbjct: 325 PFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSL 247
           N ++ +  +       +L  L +S+N L   +F        ++ L L  N+ I  IP+ +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNK-IKSIPKQV 440

Query: 248 SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN 296
            K  +L+ L + +N L  +  P           F +L SL  + +  N 
Sbjct: 441 VKLEALQELNVASNQLKSV--PDGI--------FDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 52/338 (15%), Positives = 102/338 (30%), Gaps = 43/338 (12%)

Query: 1   HLTSIEELYLSNNHFQ-IP-------------------ISLEPLFNH-SRLKRLWAYNNE 39
               +E L LS+N    I                    + +   F + S+LK L      
Sbjct: 67  FNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

Query: 40  IKAEITES-HSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPN 98
           ++         L      L          D      F      +                
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 99  WLLENNAKLETLFLINDSIGGPFR---LPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL-- 153
             + N        ++ D+    F      +  + +L  L ++N     +  + I  ++  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 154 PSLFSFNISTNALHGSIPSSFGNMNF-----LRILDLSSNQLTGEIPERLAVGCVNLEFL 208
            +++ F+IS   L G +     + +      L I  + S+         +     N+   
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIK 305

Query: 209 ALSNNNLKG-HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267
             + +  +  HM C +  ++    L   +N     + ++    + LE L L  N L +++
Sbjct: 306 NFTVSGTRMVHMLCPS-KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
                    I     Q+ SL  LDIS N++S       
Sbjct: 365 --------KIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTG 192
            +D S N    H+P    D+       NIS N +     S   +++ LRIL +S N++  
Sbjct: 4   LVDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 193 EIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQS--LSKC 250
            +   +      LE+L LS+N L            NL+ L L  N F   +P        
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPICKEFGNM 114

Query: 251 SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHI-LDISDNNISGSLPSCFHPLY 309
           S L+ L L+   L               +    L    + L + +       P       
Sbjct: 115 SQLKFLGLSTTHLEKS----------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164

Query: 310 IKKVHL 315
            + +H+
Sbjct: 165 TESLHI 170

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 38/179 (21%), Positives = 61/179 (34%), Gaps = 13/179 (7%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
              L++S N     +       L  L    IS N +     S F     L  LDLS N+L
Sbjct: 23  TTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRFIGEIPQSLSK 249
                       VNL+ L LS N       C+ F N++ L+ L L            ++ 
Sbjct: 82  VKISCHPT----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 250 CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
            +  + L +   +  +        E P  ++     SLHI+  ++      L      +
Sbjct: 138 LNISKVLLVLGETYGEK-------EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 36/326 (11%), Positives = 97/326 (29%), Gaps = 43/326 (13%)

Query: 3   TSIEELYLSNNHFQIPISLEP--LFNHSRLKRLWAYNNEIKAEITES-HSLTAPNFQLQS 59
                L +S N+      L    + + S+L+ L   +N I+               +L+ 
Sbjct: 21  QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ----ELEY 73

Query: 60  LLLSSGYGDGVTFPKFLYHQH-DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI- 117
           L LS      ++    +  +H DL       + +  +F N      ++L+ L L    + 
Sbjct: 74  LDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNM-----SQLKFLGLSTTHLE 128

Query: 118 GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177
                   H +     L +           E  + L    + ++              ++
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETY----GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR-------------NF 224
           +   + +L  + +   + +      +++     +N  L                      
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 225 NLANLRQLQLEDNRFIGEIPQSLSKCS--SLEGLYLNNNSLSDITMPKNHLEGPIPVEFC 282
               +    + + +  G++       S  SL+ L ++         P++++       + 
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI-------YE 297

Query: 283 QLYSLHILDISDNNISGSLPSCFHPL 308
              +++I + + +        C   +
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKI 323

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 2e-13
 Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 18/181 (9%)

Query: 130 RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ 189
            L+ LDV NN     +P         L   N   N L   +P    +   L +L + +NQ
Sbjct: 121 SLKHLDVDNNQLT-MLPELPA----LLEYINADNNQLT-MLPELPTS---LEVLSVRNNQ 171

Query: 190 LTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNFNLANLRQ-LQLEDNRFIGEIPQS 246
           LT  +PE       +LE L +S N L+    +  RN +        +  +NR I  IP++
Sbjct: 172 LT-FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIPEN 225

Query: 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306
           +        + L +N LS         +   P          + D   N +   L     
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

Query: 307 P 307
            
Sbjct: 286 A 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 153 LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSN 212
           L     +N  +   +    S++       +   + N+    + E L         L L+ 
Sbjct: 13  LSQNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQLNR 68

Query: 213 NNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNH 272
            NL       N     +  L++  N  +  +P+     +SLE L   +N LS        
Sbjct: 69  LNLSS--LPDNL-PPQITVLEITQNA-LISLPELP---ASLEYLDACDNRLST------- 114

Query: 273 LEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
               +P       SL  LD+ +N ++  LP 
Sbjct: 115 ----LPELPA---SLKHLDVDNNQLT-MLPE 137

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 24/136 (17%)

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSN---NNLKGHMFCRNFNLANLRQL 232
           N NF    +   N ++              E  AL     N     +  +   +    +L
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLL--KECLINQFSEL 64

Query: 233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDI 292
           QL     +  +P +L     +  L +  N+L             +P        L  LD 
Sbjct: 65  QLNRLN-LSSLPDNL--PPQITVLEITQNALIS-----------LPELPAS---LEYLDA 107

Query: 293 SDNNISGSLPSCFHPL 308
            DN +S +LP     L
Sbjct: 108 CDNRLS-TLPELPASL 122

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 59/309 (19%), Positives = 101/309 (32%), Gaps = 63/309 (20%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES--HSLTAPNFQLQSL 60
            +++ L LSNN     IS   L     L+ L   +N I   I E    SL      L+ L
Sbjct: 52  EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLG----SLEHL 105

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI--- 117
                               DL   +LS++       +   +  + L  L L+ +     
Sbjct: 106 --------------------DLSYNYLSNL------SSSWFKPLSSLTFLNLLGNPYKTL 139

Query: 118 --GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG 175
                F        +L+ L V N +    I  +    L  L    I  + L    P S  
Sbjct: 140 GETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGH--------MFCRNFNLA 227
           ++  +  L L   Q    + E       ++E L L + +L                    
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 228 NLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSL 287
             R +++ D   + ++ + L++ S L  L  + N L   ++P           F +L SL
Sbjct: 255 TFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLK--SVPDG--------IFDRLTSL 303

Query: 288 HILDISDNN 296
             + +  N 
Sbjct: 304 QKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 25/190 (13%)

Query: 130 RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSN 188
            L FL++  N ++      +   L  L    +        I    F  + FL  L++ ++
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF--NLANLRQLQLEDNRF----IGE 242
            L      +      N+  L L        +    F    +++  L+L D         E
Sbjct: 185 DLQ-SYEPKSLKSIQNVSHLILHMKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 243 IP----QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
           +      SL K  +   + + + SL  +                Q+  L  L+ S N + 
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQV-----------MKLLNQISGLLELEFSRNQLK 290

Query: 299 GSLPSCFHPL 308
                 F  L
Sbjct: 291 SVPDGIFDRL 300

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 17/162 (10%)

Query: 151 DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL 210
            +  ++ S ++S N +     S       L+ L L+SN +   I E       +LE L L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 211 SNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267
           S N L       F     L++L  L L  N +     ++L + S    L      L  + 
Sbjct: 108 SYNYLSNLSSSWF---KPLSSLTFLNLLGNPY-----KTLGETSLFSHL----TKLQILR 155

Query: 268 MPKNHLEGPIPVE-FCQLYSLHILDISDNNISGSLPSCFHPL 308
           +        I  + F  L  L  L+I  +++    P     +
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 39/250 (15%), Positives = 67/250 (26%), Gaps = 45/250 (18%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L S+E L LS N+    +S       S L  L    N  K                   
Sbjct: 98  SLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKT------------------ 138

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
           L  +     +T    L           + I                LE L +    +   
Sbjct: 139 LGETSLFSHLT---KLQILRVGNMDTFTKI------QRKDFAGLTFLEELEIDASDLQSY 189

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHG----SIPS---- 172
               +   + +  L +        +     D+  S+    +    L       + +    
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 173 SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANL 229
           S       R + ++   L      +L      L  L  S N LK     +F     L +L
Sbjct: 249 SLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKSVPDGIFD---RLTSL 303

Query: 230 RQLQLEDNRF 239
           +++ L  N +
Sbjct: 304 QKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 32/281 (11%), Positives = 81/281 (28%), Gaps = 59/281 (20%)

Query: 1   HLTSIEELYLSNNHFQIPISLEP-LFNH-SRLKRLWAYNNEIKAEITES--HSLTAPNFQ 56
              +++ L L++N      ++E   F+    L+ L    N +   ++ S    L+     
Sbjct: 74  RCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLS----S 125

Query: 57  LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPN------WLLENNAKLETL 110
           L  L                    +L       +     F +        + N      +
Sbjct: 126 LTFL--------------------NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSI 170
                       L       L  L++  ++ Q     +    + ++    +        +
Sbjct: 166 -----QRKDFAGLT-----FLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 171 PS-SFGNMNFLRILDLSSNQLTGEIPERLAVG-------CVNLEFLALSNNNLKGHMFCR 222
                   + +  L+L    L       L+ G             + +++ +L   +   
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL 263
              ++ L +L+   N+          + +SL+ ++L+ N  
Sbjct: 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 1e-12
 Identities = 50/307 (16%), Positives = 96/307 (31%), Gaps = 86/307 (28%)

Query: 5   IEELYLSNNHFQIPIS-LEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLS 63
           + E    +     PI  + P    +   +       +   +T++  L      +  +   
Sbjct: 1   MGETITVST----PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNE-LN----SIDQI--- 48

Query: 64  SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRL 123
                               +  +  ++         ++    +  LFL  + +      
Sbjct: 49  -----------------IANNSDIKSVQG--------IQYLPNVTKLFLNGNKLTDIK-- 81

Query: 124 PIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRIL 183
           P+   + L +L +  N         I D+                   SS  ++  L+ L
Sbjct: 82  PLTNLKNLGWLFLDENK--------IKDL-------------------SSLKDLKKLKSL 114

Query: 184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI 243
            L  N ++ +I   L      LE L L NN +          L  L  L LEDN+ I +I
Sbjct: 115 SLEHNGIS-DI-NGLV-HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ-ISDI 168

Query: 244 PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
              L+  + L+ LYL+ N +SD+                 L +L +L++          +
Sbjct: 169 V-PLAGLTKLQNLYLSKNHISDLR------------ALAGLKNLDVLELFSQECLNKPIN 215

Query: 304 CFHPLYI 310
               L +
Sbjct: 216 HQSNLVV 222

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 4e-12
 Identities = 50/266 (18%), Positives = 95/266 (35%), Gaps = 38/266 (14%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
                +  L                 + + ++ A N++IK  +     L      +  L 
Sbjct: 20  FAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK-SVQGIQYLP----NVTKLF 71

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
           L+   G+ +T  K L +  +L  + L   K+     +  L++  KL++L L ++ I    
Sbjct: 72  LN---GNKLTDIKPLTNLKNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHNGIS--- 122

Query: 122 RL-PIHPHRRLRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFG 175
            +  +    +L  L + NN         I DI     L  L + ++  N +   I     
Sbjct: 123 DINGLVHLPQLESLYLGNNK--------ITDITVLSRLTKLDTLSLEDNQIS-DI-VPLA 172

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235
            +  L+ L LS N ++ ++   LA G  NL+ L L +            NL     ++  
Sbjct: 173 GLTKLQNLYLSKNHIS-DLRA-LA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNN 261
           D       P+ +S     E   +  +
Sbjct: 230 DGSL--VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           HL  +E LYL NN  +I   +  L   ++L  L   +N+I  +I     LT    +LQ+L
Sbjct: 129 HLPQLESLYLGNN--KI-TDITVLSRLTKLDTLSLEDNQIS-DIVPLAGLT----KLQNL 180

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            LS    + ++  + L    +L+ + L   +   K  N    N     T+   + S+  P
Sbjct: 181 YLS---KNHISDLRALAGLKNLDVLELFSQECLNKPINH-QSNLVVPNTVKNTDGSLVTP 236

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPV 147
               I         +V  +  +    V
Sbjct: 237 E--IISDDGDYEKPNVKWHLPEFTNEV 261

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQLTG 192
           LD+S+NN            L +L S  +S N L+  I S +F  +  LR LDLSSN L  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 193 EIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIP----Q 245
            + E L      LE L L NN++     + F    ++A L++L L  N+ I   P    +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQ-ISRFPVELIK 157

Query: 246 SLSKCSSLEGLYLNNNSLSDI 266
             +K   L  L L++N L  +
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLED 236
             +LDLS N L+    E       NL  L LS+N+L       F     + NLR L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 237 NRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
           N  +  +     S   +LE L L NN +  +              F  +  L  L +S N
Sbjct: 98  NH-LHTLDEFLFSDLQALEVLLLYNNHIVVVD----------RNAFEDMAQLQKLYLSQN 146

Query: 296 NIS 298
            IS
Sbjct: 147 QIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 24/141 (17%)

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL----KGHMFCRNFNLANLRQLQLED 236
            IL  S  QL   +P+ L         L LS+NNL              L NL  L L  
Sbjct: 21  NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 237 NRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
           N  +  I  ++     +L  L L++N L  +   +             L +L +L + +N
Sbjct: 74  NH-LNFISSEAFVPVPNLRYLDLSSNHLHTL--DEFLFSD--------LQALEVLLLYNN 122

Query: 296 NISGSLPSCFHPL-YIKKVHL 315
           +I     + F  +  ++K++L
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYL 143

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 50/307 (16%), Positives = 93/307 (30%), Gaps = 45/307 (14%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L ++  L   N+       +  +   + L +L   +N I   +  S      N  L  L
Sbjct: 40  QLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNIT-TLDLSQ-----NTNLTYL 90

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
              S     +           L  ++    K+     +     N  L  L    +++   
Sbjct: 91  ACDSNKLTNLDVTPL----TKLTYLNCDTNKLTKLDVS----QNPLLTYLNCARNTLT-- 140

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
             + +  + +L  LD   N     + V        L + + S N +             L
Sbjct: 141 -EIDVSHNTQLTELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---LDVSQNKLL 193

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
             L+  +N +T ++        + L FL  S+N L          L  L       N  +
Sbjct: 194 NRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNP-L 245

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKN---------HLEGPIPVEFCQLYSLHILD 291
            E+   +S  S L  L+     L +I +  N                ++      L++LD
Sbjct: 246 TELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

Query: 292 ISDNNIS 298
                I+
Sbjct: 304 CQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 56/316 (17%), Positives = 92/316 (29%), Gaps = 63/316 (19%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT +  L    N     ++   +  +  L  L    N +  EI  SH     N QL  L
Sbjct: 104 PLTKLTYLNCDTNK----LTKLDVSQNPLLTYLNCARNTLT-EIDVSH-----NTQLTEL 153

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
                  +       +  Q  L  +  S      K     +  N  L  L    ++I   
Sbjct: 154 DCH---LNKKITKLDVTPQTQLTTLDCS----FNKITELDVSQNKLLNRLNCDTNNI--- 203

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
            +L ++ + +L FLD S+N     I V     L  L  F+ S N L     S+      L
Sbjct: 204 TKLDLNQNIQLTFLDCSSNKLT-EIDVTP---LTQLTYFDCSVNPLTELDVSTLSK---L 256

Query: 181 RILDLSSNQLTG------------------EIPERLAVGCVNLEFLALSNNNLKGHMFCR 222
             L      L                    +I E        L  L      +       
Sbjct: 257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS- 315

Query: 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFC 282
                 L  L L +   + E+   +S  + L+ L   N  + D +               
Sbjct: 316 --QNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQDFS------------SVG 358

Query: 283 QLYSLHILDISDNNIS 298
           ++ +L+    ++    
Sbjct: 359 KIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 53/313 (16%), Positives = 100/313 (31%), Gaps = 58/313 (18%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLT-------- 51
            LT + +L  ++N+    I+   L  ++ L  L   +N++   ++T    LT        
Sbjct: 62  KLTGLTKLICTSNN----ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNK 117

Query: 52  ------APNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNA 105
                 + N  L  L  +      +           L ++       N K     +    
Sbjct: 118 LTKLDVSQNPLLTYLNCARNTLTEIDVSHN----TQLTELDCHL---NKKITKLDVTPQT 170

Query: 106 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNA 165
           +L TL    + I     L +  ++ L  L+   NN    + +        L   + S+N 
Sbjct: 171 QLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLDLN---QNIQLTFLDCSSNK 223

Query: 166 LHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFN 225
           L   I      +  L   D S N LT E+          L  L     +L         +
Sbjct: 224 LT-EID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTDLLE---IDLTH 273

Query: 226 LANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLY 285
              L   Q E  R I E+   ++  + L  L      ++++             +  Q  
Sbjct: 274 NTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL-------------DLSQNP 318

Query: 286 SLHILDISDNNIS 298
            L  L +++  ++
Sbjct: 319 KLVYLYLNNTELT 331

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 40/183 (21%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS---------------SFG 175
           L  L  S N+    +P      L SL   N +  AL    P                   
Sbjct: 93  LESLVASCNSLT-ELPELPQS-LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235
           N +FL+I+D+ +N L  ++P+       +LEF+A  NN L+        NL  L  +  +
Sbjct: 151 NSSFLKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLEE--LPELQNLPFLTAIYAD 203

Query: 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
           +N  + ++P       SLE +   NN L ++             E   L  L  +   +N
Sbjct: 204 NNS-LKKLPDLP---LSLESIVAGNNILEELP------------ELQNLPFLTTIYADNN 247

Query: 296 NIS 298
            + 
Sbjct: 248 LLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 27/183 (14%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
           L +L VSNN  +  +P E+ +    L   ++  N+L   +P    +   L  +   +NQL
Sbjct: 133 LEYLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQL 185

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKC 250
             E+PE        L  +   NN+LK           +L  +   +N    E    L   
Sbjct: 186 E-ELPE--LQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNIL--EELPELQNL 236

Query: 251 SSLEGLYLNNNSLSDI----------TMPKNHLEGPIPVEFCQLYSLHILDISDNNISGS 300
             L  +Y +NN L  +           +  N+L   +P     L  L + +   + +S  
Sbjct: 237 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSEL 295

Query: 301 LPS 303
            P+
Sbjct: 296 PPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 70/315 (22%), Positives = 118/315 (37%), Gaps = 55/315 (17%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
             S+E +   NN  +    L  L N   L  ++A NN +K       SL   +    + +
Sbjct: 172 PPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNNI 226

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
           L             L +   L  ++  +  +    P+        LE L + ++ +    
Sbjct: 227 LEE--------LPELQNLPFLTTIYADNNLLK-TLPDLP----PSLEALNVRDNYLT--- 270

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
            LP  P + L FLDVS N F       + ++ P+L+  N S+N +  S+     +   L 
Sbjct: 271 DLPELP-QSLTFLDVSENIFS-----GLSELPPNLYYLNASSNEIR-SLCDLPPS---LE 320

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
            L++S+N+L  E+P         LE L  S N+L            NL+QL +E N    
Sbjct: 321 ELNVSNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNPLR- 370

Query: 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKN----HLEG----PIPVEFCQLYSLHILDIS 293
           E P       S+E L +N++      +P+N    H+E       P       S+  L ++
Sbjct: 371 EFPDIPE---SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMN 424

Query: 294 DNNISGSLPSCFHPL 308
              +           
Sbjct: 425 SERVVDPYEFAHETT 439

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 61/298 (20%), Positives = 100/298 (33%), Gaps = 57/298 (19%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
              S+E +   NN  +    L+ L     L  ++A NN +K       SL      ++  
Sbjct: 213 LPLSLESIVAGNNILEELPELQNLPF---LTTIYADNNLLKTLPDLPPSLE--ALNVRDN 267

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L+         P+       L  + +S    +G     L E    L  L   ++ I   
Sbjct: 268 YLTD-------LPELPQS---LTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL 312

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
             LP      L  L+VSNN     +P         L     S N L   +P    N   L
Sbjct: 313 CDLP----PSLEELNVSNNKLI-ELPALPP----RLERLIASFNHLA-EVPELPQN---L 359

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
           + L +  N L  E P+       ++E L ++++  +     +     NL+QL +E N  +
Sbjct: 360 KQLHVEYNPLR-EFPDIPE----SVEDLRMNSHLAEVPELPQ-----NLKQLHVETNP-L 408

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
            E P       S+E L +N+  + D          P          L       ++  
Sbjct: 409 REFPDIP---ESVEDLRMNSERVVD----------PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 29/154 (18%), Positives = 48/154 (31%), Gaps = 27/154 (17%)

Query: 169 SIPSSFGNMNFLRILDLSSNQLTGEIPERLA------------VGCVNLEFLALSNNNLK 216
            +P    N+        + ++     P                        L L+N  L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 217 GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT-------MP 269
                      +L  L    N  + E+P+      SL     N  +LSD+        + 
Sbjct: 85  ----SLPELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139

Query: 270 KNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303
            N LE  +P E      L I+D+ +N++   LP 
Sbjct: 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPD 170

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 3e-11
 Identities = 46/309 (14%), Positives = 91/309 (29%), Gaps = 30/309 (9%)

Query: 8   LYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIK---AEITESHSLTAPNFQLQSLLLSS 64
           L L  +   + +        +R   +W  +        ++ +                  
Sbjct: 274 LLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL 333

Query: 65  GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLP 124
                  + +       L    LS  K         LE+  +L+ L   N          
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKSTVL--QSELESCKELQELEPENKW---CLLTI 388

Query: 125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILD 184
           I   R L  L       Q    ++  D + + +  ++ +  L  +          +R+L 
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVRVLH 447

Query: 185 LSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP 244
           L+   LT  +        + +  L LS+N L+         L  L  LQ  DN  +  + 
Sbjct: 448 LAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNA-LENVD 502

Query: 245 QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC 304
             ++    L+ L L NN L      +                L +L++  N++      C
Sbjct: 503 -GVANLPRLQELLLCNNRLQQSAAIQ---------PLVSCPRLVLLNLQGNSL------C 546

Query: 305 FHPLYIKKV 313
                 +++
Sbjct: 547 QEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 4e-09
 Identities = 48/280 (17%), Positives = 86/280 (30%), Gaps = 17/280 (6%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL- 61
                ++L +          P      +        E              +   + L  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
                         L    +L+++   +          ++     L+ L    +++    
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFS 409

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
            L      R  +LD   + F     V   +        +++   L  ++      +  + 
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV-LHLAHKDL--TVLCHLEQLLLVT 466

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRFI 240
            LDLS N+L   +P  LA     LE L  S+N L+         NL  L++L L +NR +
Sbjct: 467 HLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNR-L 520

Query: 241 GEIP--QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP 278
            +    Q L  C  L  L L  NSL      +  L   +P
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 130 RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ 189
            +  LD+S+N  +  +P  +   L  L     S NAL         N+  L+ L L +N+
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNR 519

Query: 190 LTG-EIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL 234
           L      + L   C  L  L L  N+L      +      L  +  
Sbjct: 520 LQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 18/171 (10%)

Query: 130 RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSN 188
            L  L ++ N  Q  + +     L SL         L  S+ +   G++  L+ L+++ N
Sbjct: 77  HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLR-QLQLEDNRFIGEIP 244
            +             NLE L LS+N ++            +  L   L L  N  +  I 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQ 193

Query: 245 QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295
               K   L+ L L+ N L  +              F +L SL  + +  N
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVP----------DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 171 PSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLA 227
             SF +   L++LDLS  ++   I +       +L  L L+ N ++      F     L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAF---SGLS 100

Query: 228 NLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYS 286
           +L++L   +   +  +    +    +L+ L + +N +             +P  F  L +
Sbjct: 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF---------KLPEYFSNLTN 150

Query: 287 LHILDISDNNISGSLPS 303
           L  LD+S N I  S+  
Sbjct: 151 LEHLDLSSNKIQ-SIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 26/138 (18%)

Query: 170 IPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNL 226
           +P S       + LDLS N L   +          L+ L LS   ++      +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSL 75

Query: 227 ANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLY 285
           ++L  L L  N  I  +     S  SSL+ L     +L+ +                 L 
Sbjct: 76  SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLE----------NFPIGHLK 124

Query: 286 SLHILDISDNNISGSLPS 303
           +L  L+++ N I  S   
Sbjct: 125 TLKELNVAHNLIQ-SFKL 141

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 54/226 (23%)

Query: 1   HLTSIEELYLSNNHFQIPISLEP-LFNH-SRLKRLWAYNNEIKA-------EITESHSLT 51
               ++ L LS    Q   ++E   +   S L  L    N I++        ++    L 
Sbjct: 50  SFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106

Query: 52  APNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLF 111
           A    L S  L +     +   K L     +    +   K+   F N             
Sbjct: 107 AVETNLAS--LENFPIGHLKTLKELN----VAHNLIQSFKLPEYFSN------------- 147

Query: 112 LINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSL----FSFNISTNALH 167
           L N                L  LD+S+N  Q  I      +L  +     S ++S N ++
Sbjct: 148 LTN----------------LEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 168 GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNN 213
              P +F  +  L+ L L +NQL   +P+ +     +L+ + L  N
Sbjct: 191 FIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 50/246 (20%)

Query: 3   TSIEELYLSNNHFQIPISLEP-LFNH-SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            S + L LS N  +    L    F     L+ L     EI+                   
Sbjct: 28  FSTKNLDLSFNPLR---HLGSYSFFSFPELQVLDLSRCEIQT------------------ 66

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI--- 117
            +  G    ++    L     L    +  +              + L+ L  +  ++   
Sbjct: 67  -IEDGAYQSLSHLSTLI----LTGNPIQSL------ALGAFSGLSSLQKLVAVETNLASL 115

Query: 118 -GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFG 175
              P        + L+ L+V++N  Q     E    L +L   ++S+N +  SI      
Sbjct: 116 ENFPIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLR 170

Query: 176 NMNFLRI----LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ 231
            ++ + +    LDLS N +   I    A   + L+ LAL  N LK         L +L++
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 232 LQLEDN 237
           + L  N
Sbjct: 229 IWLHTN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIP--SSFGNMNFLRILDLS 186
            ++  +++ N     +I  +    LP L    I    L    P  +   + +   IL+++
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEIT 138

Query: 187 SNQLTGEIPERLAVGCVN-LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
            N     IP     G  N    L L NN     +    FN   L  + L  N+++  I +
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 246 SL--SKCSSLEGLYLNNNSLSDI 266
                  S    L ++  S++ +
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQ 189
            + L +   + +  IP      LP++    +S +     + S SF N++ +  +++ + +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 190 LTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIPQS 246
               I          L+FL + N  LK          ++      L++ DN ++  IP +
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV--YSTDIFFILEITDNPYMTSIPVN 149

Query: 247 L--SKCSSLEGLYLNNNSLSDIT--------------MPKNHLEGPIPVEFCQLYS-LHI 289
                C+    L L NN  + +                   +L       F  +YS   +
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 290 LDISDNNISGSLPS 303
           LD+S  +++ +LPS
Sbjct: 210 LDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 46/150 (30%)

Query: 183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK-------------------------- 216
             ++   +   IP        + + L L   +L+                          
Sbjct: 16  FRVTCKDIQ-RIPSLPP----STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 217 --GHMFCRNFNLANLRQLQLEDNRFIGEIPQS-LSKCSSLEGLYLNNNSLSDITMPKNHL 273
              H F   +NL+ +  +++ + R +  I    L +   L+ L + N  L          
Sbjct: 71  LESHSF---YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF------- 120

Query: 274 EGPIPVEFCQLYSLHILDISDNNISGSLPS 303
             P   +        IL+I+DN    S+P 
Sbjct: 121 --PDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE 193
           L ++NN F       I   LP L   N S N +      +F   + +  + L+SN+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 194 IPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIPQ-SLSK 249
           +  ++  G  +L+ L L +N +       F     L+++R L L DN+ I  +   +   
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQ-ITTVAPGAFDT 151

Query: 250 CSSLEGLYLNNN 261
             SL  L L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFN-LANLRQLQLEDNRF 239
             L L++N+ T      +      L  +  SNN +   +    F   + + ++ L  NR 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR- 92

Query: 240 IGEIPQSL-SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
           +  +   +     SL+ L L +N ++ +              F  L S+ +L + DN I+
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCV---------GNDS-FIGLSSVRLLSLYDNQIT 142

Query: 299 GSLPSCFHPL 308
              P  F  L
Sbjct: 143 TVAPGAFDTL 152

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 22/183 (12%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMNFLRILDLSSNQ 189
            + LD+ +N     +P +    L  L    ++ N L  ++P+  F  +  L  L ++ N+
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 190 LTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIPQS 246
           L   +P  +    VNL  L L  N LK     +F     L  L  L L  N  +  +P+ 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---LTKLTYLSLGYNE-LQSLPKG 151

Query: 247 L-SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
           +  K +SL+ L L NN L  +  P+          F +L  L  L + +N +       F
Sbjct: 152 VFDKLTSLKELRLYNNQLKRV--PEG--------AFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 306 HPL 308
             L
Sbjct: 202 DSL 204

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 10/136 (7%)

Query: 130 RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMNFLRILDLSSN 188
            L  L V++N  Q  +P+ + D L +L    +  N L  S+P   F ++  L  L L  N
Sbjct: 86  NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN 143

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
           +L   +P+ +     +L+ L L NN LK      F     L  L+ L+L++N+       
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD---KLTELKTLKLDNNQLKRVPEG 199

Query: 246 SLSKCSSLEGLYLNNN 261
           +      L+ L L  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 26/138 (18%)

Query: 170 IPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNL 226
           IP+        + LDL SN+L+  +P +       L  L L++N L+     +F     L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF---KEL 84

Query: 227 ANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLY 285
            NL  L + DN+ +  +P  +  +  +L  L L+ N L  +         P  V F  L 
Sbjct: 85  KNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSL---------PPRV-FDSLT 133

Query: 286 SLHILDISDNNISGSLPS 303
            L  L +  N +  SLP 
Sbjct: 134 KLTYLSLGYNELQ-SLPK 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 48/219 (21%)

Query: 3   TSIEELYLSNNHFQIPISLEP-LFNH-SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
              ++L L +N      SL    F+  ++L+ L+  +N                 +LQ+L
Sbjct: 37  ADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDN-----------------KLQTL 76

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSI--- 117
              +G    +          +LE + ++  K+    P  + +    L  L L  + +   
Sbjct: 77  --PAGIFKELK---------NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL 124

Query: 118 -GGPF-RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS-F 174
               F  L      +L +L +  N  Q  +P  + D L SL    +  N L   +P   F
Sbjct: 125 PPRVFDSLT-----KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAF 177

Query: 175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNN 213
             +  L+ L L +NQL   +PE        L+ L L  N
Sbjct: 178 DKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 21/181 (11%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS-TNALHGSIPSSFGNMNFLRILDLSS 187
             L  +++S N+    I  ++   LP L    I   N L    P +F N+  L+ L +S+
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 188 NQLTGEIPERLAVGCVNLEFLALSNNN----LKGHMFCRNFNL-ANLRQLQLEDNRFIGE 242
             +   +P+   +  +    L + +N     ++ + F     L      L L  N     
Sbjct: 114 TGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQEI 169

Query: 243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
              + +     E    +NN+L ++  P +   G             ILDIS   I  SLP
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEEL--PNDVFHG--------ASGPVILDISRTRIH-SLP 218

Query: 303 S 303
           S
Sbjct: 219 S 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 23/188 (12%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE 193
                +     IP    D+  +          L      +F     L  +++S N +   
Sbjct: 14  FLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 194 IPERLAVGCVNLEFLALSNNN----LKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ-SLS 248
           I   +      L  + +   N    +    F    NL NL+ L + +   I  +P     
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAF---QNLPNLQYLLISNTG-IKHLPDVHKI 125

Query: 249 KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL-YSLHILDISDNNISGSLPSCFHP 307
                  L + +N          ++       F  L +   IL ++ N I     S F+ 
Sbjct: 126 HSLQKVLLDIQDN---------INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176

Query: 308 LYIKKVHL 315
             + +++L
Sbjct: 177 TQLDELNL 184

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 39/263 (14%), Positives = 79/263 (30%), Gaps = 38/263 (14%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITES--HSLTAPNFQLQSL 60
            +  EL       ++ I          L+++    N++   I      +L     +L  +
Sbjct: 30  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP----KLHEI 84

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            +                         +++           +N   L+ L + N  I   
Sbjct: 85  RIE----------------------KANNLLY---INPEAFQNLPNLQYLLISNTGIKHL 119

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPS-LFSFNISTNALHGSIPSSFGNMNF 179
             +      +   LD+ +N     I       L        ++ N +     S+F     
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
             +    +N L  E+P  +  G      L +S   +  H       L NL++L+      
Sbjct: 180 DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI--HSLPSY-GLENLKKLRARSTYN 235

Query: 240 IGEIPQSLSKCSSLEGLYLNNNS 262
           + ++P +L K  +L    L   S
Sbjct: 236 LKKLP-TLEKLVALMEASLTYPS 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 34/173 (19%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMNFLRILDL 185
           L  L++ +N         I D+     L  +    +S N L     S+   +  ++ LDL
Sbjct: 65  LIGLELKDNQ--------ITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114

Query: 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
           +S Q+T   P     G  NL+ L L  N +          L NL+ L + + + + ++  
Sbjct: 115 TSTQITDVTPLA---GLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQ-VSDLT- 167

Query: 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
            L+  S L  L  ++N +SDI+                L +L  + + +N IS
Sbjct: 168 PLANLSKLTTLKADDNKISDIS------------PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 42/203 (20%), Positives = 91/203 (44%), Gaps = 36/203 (17%)

Query: 101 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-----LPS 155
           ++    L  L L ++ I      P+    ++  L++S N         + ++     L S
Sbjct: 59  VQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNP--------LKNVSAIAGLQS 108

Query: 156 LFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215
           + + ++++  +  +  +    ++ L++L L  NQ+T  I   LA G  NL++L++ N  +
Sbjct: 109 IKTLDLTSTQI--TDVTPLAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQV 163

Query: 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEG 275
                  N  L+ L  L+ +DN+ I +I   L+   +L  ++L NN +SD++        
Sbjct: 164 SDLTPLAN--LSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDVS-------- 211

Query: 276 PIPVEFCQLYSLHILDISDNNIS 298
                     +L I+ +++  I+
Sbjct: 212 ----PLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 43/270 (15%), Positives = 96/270 (35%), Gaps = 50/270 (18%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLL 61
           L +  ++    ++           +   +  L A+   +   I     L      L  L 
Sbjct: 18  LANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVT-TIEGVQYLN----NLIGL- 68

Query: 62  LSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF 121
                              +L+D  ++ +          L+N  K+  L L  + +    
Sbjct: 69  -------------------ELKDNQITDLAP--------LKNLTKITELELSGNPLKNVS 101

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
              I   + ++ LD+++       P+     L +L    +  N +  +  S    +  L+
Sbjct: 102 --AIAGLQSIKTLDLTSTQITDVTPLAG---LSNLQVLYLDLNQI--TNISPLAGLTNLQ 154

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
            L + + Q++   P  LA     L  L   +N +         +L NL ++ L++N+ I 
Sbjct: 155 YLSIGNAQVSDLTP--LA-NLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQ-IS 208

Query: 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKN 271
           ++   L+  S+L  + L N ++++  +  N
Sbjct: 209 DVS-PLANTSNLFIVTLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 35/219 (15%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +L ++  L L +N       L PL N +++  L    N +K  ++    L      +++L
Sbjct: 61  YLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIKTL 112

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            L+S     +T    L    +L+ ++L   ++    P   L     L+ L + N  +   
Sbjct: 113 DLTST---QITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL 166

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFG 175
              P+    +L  L   +N         I DI     LP+L   ++  N +  S  S   
Sbjct: 167 --TPLANLSKLTTLKADDNK--------ISDISPLASLPNLIEVHLKNNQI--SDVSPLA 214

Query: 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNN 214
           N + L I+ L++  +T +          NL    +    
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNN----NLVVPNVVKGP 249

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 64/340 (18%), Positives = 109/340 (32%), Gaps = 52/340 (15%)

Query: 1   HLTSIEELYLSNNHFQIP----ISLEPLFNHSRLKRLWAYNNEIKAEITESHSLT-APNF 55
            L +++EL+LS+N         +    L    RL++L      + A   E  +       
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 56  QLQSLLLSS---GYGDGVTFPKFLYHQHD-LEDVHLSHIKMNGKFPNWL---LENNAKLE 108
             + L +S+            + L      LE + L    +       L   + + A L 
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 109 TLFLINDSIGGP-----FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL---PSLFSFN 160
            L L ++ +G           +HP  RLR L +           ++  +L    SL   +
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 161 ISTNALHGS----IPSSFGNMNF-LRILDLSSNQLTGEIPERLAVG---CVNLEFLALSN 212
           ++ N L       +  +       L  L + S   T       +        L  L +SN
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 213 NNLKG---HMFCR--NFNLANLRQLQLEDNRF----IGEIPQSLSKCSSLEGLYLNNNSL 263
           N L+       C+      + LR L L D          +  +L    SL  L L+NN L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 264 SDITMPKNHLEGPIPVEFCQL-----YSLHILDISDNNIS 298
            D  +          ++  +        L  L + D   S
Sbjct: 411 GDAGI----------LQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 60/355 (16%), Positives = 104/355 (29%), Gaps = 79/355 (22%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLF----NHSRLKRLWAYNNEIKAEITE--SHSLTAPN 54
            L   + + L +         + +      +  L  L   +NE+           L  P+
Sbjct: 26  LLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84

Query: 55  FQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIN 114
            ++Q L L +                 L       +          L     L+ L L +
Sbjct: 85  CKIQKLSLQN---------------CCLTGAGCGVLSS-------TLRTLPTLQELHLSD 122

Query: 115 DSIGGP-----FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL---PSLFSFNISTNAL 166
           + +G           + P  RL  L +   +        +  +L   P      +S N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 167 HGS----IPSSFGNMNF-LRILDLSSNQLTGEIPERLAVG---CVNLEFLALSNNNLKG- 217
           + +    +     +    L  L L S  +T +    L        +L  LAL +N L   
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 218 --HMFCRNFNLAN--LRQLQLEDNRF----IGEIPQSLSKCSSLEGLYLNNNSLSDITM- 268
                C      +  LR L + +        G++ + L    SL+ L L  N L D    
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 269 --------PKNHLEGPIPVEFCQL---------------YSLHILDISDNNISGS 300
                   P   LE  + V+ C                   L  L IS+N +  +
Sbjct: 303 LLCETLLEPGCQLE-SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 37/246 (15%), Positives = 76/246 (30%), Gaps = 33/246 (13%)

Query: 81  DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPI----HPHRRLRFLDV 136
           D++ + +   +++      LL    + + + L +  +       I      +  L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 137 SNNNFQGHIPVEIGDIL----PSLFSFNISTNALH----GSIPSSFGNMNFLRILDLSSN 188
            +N         +   L      +   ++    L     G + S+   +  L+ L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 189 QLTGEIPERLAVG----CVNLEFLALSNNNLKGHMFCRNFNLA-----NLRQLQLEDNRF 239
            L     + L  G       LE L L   +L     C           + ++L + +N  
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 240 IGEIPQSLSKC-----SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294
                + L +        LE L L +  ++            +        SL  L +  
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD------LCGIVASKASLRELALGS 236

Query: 295 NNISGS 300
           N +   
Sbjct: 237 NKLGDV 242

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 55/337 (16%), Positives = 107/337 (31%), Gaps = 46/337 (13%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLF-----NHSRLKRLWAYNNEIKAEITESHSLT-APN 54
              ++ EL L +N     + +  +         ++++L   N  +        S T    
Sbjct: 54  VNPALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112

Query: 55  FQLQSLLLSS---GYGDGVTFPKFLYHQH-DLEDVHLSHIKMNGKFPNWL---LENNAKL 107
             LQ L LS    G        + L      LE + L +  ++      L   L      
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 108 ETLFLINDSIGGP-----FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL---PSLFSF 159
           + L + N+ I         +       +L  L + +         ++  I+    SL   
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 160 NISTNALHGS----IPSSFGNMNF-LRILDLSSNQLTGEIPERLA---VGCVNLEFLALS 211
            + +N L       +     + +  LR L +    +T +    L        +L+ L+L+
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 212 NNNLK---GHMFCRNFNLAN--LRQLQLEDNRFIGE-----IPQSLSKCSSLEGLYLNNN 261
            N L      + C         L  L ++                L++   L  L ++NN
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 262 SLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
            L D  +    L   +         L +L ++D ++S
Sbjct: 352 RLEDAGV--RELCQGLGQPGS---VLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 45/307 (14%)

Query: 3   TSIEELYLSNNHFQIPISLEPLF----NHSRLKRLWAYNNEIKAEITE--SHSLTAPNFQ 56
             +E+L L         S EPL          K L   NN+I           L     Q
Sbjct: 142 CRLEKLQLEYCSLS-AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query: 57  LQSLLLSS---GYGDGVTFPKFLYHQHDLEDVHLS--HIKMNG--KFPNWLLENNAKLET 109
           L++L L S      +       +  +  L ++ L    +   G  +    LL  +++L T
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 110 LFLINDSIGGP----FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL----PSLFSFNI 161
           L++    I           +     L+ L ++ N         + + L      L S  +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 162 STNALHG----SIPSSFGNMNFLRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNN 213
            + +          S      FL  L +S+N+L       + + L      L  L L++ 
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 214 NLK-------GHMFCRNFNLANLRQLQLEDNRF----IGEIPQSLSKC-SSLEGLYLNNN 261
           ++              N    +LR+L L +N      I ++ +S+ +    LE L L + 
Sbjct: 381 DVSDSSCSSLAATLLAN---HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 262 SLSDITM 268
             S+   
Sbjct: 438 YWSEEME 444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 53/305 (17%), Positives = 89/305 (29%), Gaps = 59/305 (19%)

Query: 30  LKRLWAYNNEIKAEITESHSLT-APNFQLQSLLLSS-GYGDG--VTFPKFLYHQHDLEDV 85
           ++      + I  E  +S       +  ++ ++LS    G        + +  + DLE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 86  HLSHIKMNGKFPNWL---------LENNAKLETLFLINDSIGG----PFRLPIHPHRRLR 132
             S I                   L    KL T+ L +++ G     P    +  H  L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTG 192
            L + NN        +I   L  L            ++     N   LR +    N+L  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQEL------------AVNKKAKNAPPLRSIICGRNRLEN 173

Query: 193 EIPERLAVG---CVNLEFLALSNNNLK--------GHMFCRNFNLANLRQLQLEDNRF-- 239
              +  A        L  + +  N ++                    L+ L L+DN F  
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTH 230

Query: 240 --IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPV----EFCQLYSLHILDIS 293
                +  +L    +L  L LN+  LS          G   V       +   L  L + 
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSA--------RGAAAVVDAFSKLENIGLQTLRLQ 282

Query: 294 DNNIS 298
            N I 
Sbjct: 283 YNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 39/204 (19%), Positives = 62/204 (30%), Gaps = 41/204 (20%)

Query: 100 LLENNAKLETLFLINDSIG-------------GPFRLPIHPHRRLRFLDVSNNNFQGHIP 146
            L  +  LE L+L N+ +G                         LR +    N  +    
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 147 VEIGDIL---PSLFSFNISTNALH-----GSIPSSFGNMNFLRILDLSSNQLTGE----I 194
            E          L +  +  N +        +         L++LDL  N  T      +
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236

Query: 195 PERLAVGCVNLEFLALSNNNLK-------GHMFCRNFNLANLRQLQLEDNRFIGE----- 242
              L     NL  L L++  L           F +  N+  L+ L+L+ N  I       
Sbjct: 237 AIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNE-IELDAVRT 293

Query: 243 IPQSL-SKCSSLEGLYLNNNSLSD 265
           +   +  K   L  L LN N  S+
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 39/248 (15%), Positives = 85/248 (34%), Gaps = 57/248 (22%)

Query: 1   HLTSIEELYLSNNHF----QIPISLEPLFNHSRLKRLWAYNNEIKAE----------ITE 46
               +  + LS+N F    Q P+  + L  H+ L+ L+ +NN +  +             
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 47  SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHI-KMNGKFPNWLLENNA 105
            +        L+S++                  + LE+  +    K          +++ 
Sbjct: 151 VNKKAKNAPPLRSIICGR---------------NRLENGSMKEWAKT--------FQSHR 187

Query: 106 KLETLFLINDSIG-----GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL---PSLF 157
            L T+ ++ + I            +   + L+ LD+ +N F       +   L   P+L 
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 158 SFNISTNALHG----SIPSSFGNMNF--LRILDLSSNQLTGE----IPERLAVGCVNLEF 207
              ++   L      ++  +F  +    L+ L L  N++  +    +   +     +L F
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307

Query: 208 LALSNNNL 215
           L L+ N  
Sbjct: 308 LELNGNRF 315

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMF 220
           N +    P +F     LR +DLS+NQ++ E+      G  +L  L L  N +      +F
Sbjct: 42  NTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100

Query: 221 CRNFNLANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDI 266
                L +L+ L L  N+ I  +   +     +L  L L +N L  I
Sbjct: 101 EG---LFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 126 HPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMNFLRILD 184
            P+++LR +D+SNN     +  +    L SL S  +  N +   +P S F  +  L++L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 185 LSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN 237
           L++N++   +         NL  L+L +N L+         L  ++ + L  N
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 134 LDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQLTG 192
           + +  N  +  IP         L   ++S N +   +   +F  +  L  L L  N++T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 193 EIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSK 249
           E+P+ L  G  +L+ L L+ N +       F    +L NL  L L DN+       + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 250 CSSLEGLYLNNN 261
             +++ ++L  N
Sbjct: 151 LRAIQTMHLAQN 162

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 172 SSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLR 230
           + + N    R LDL   ++   + E L       + +  S+N ++       F  L  L+
Sbjct: 13  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 231 QLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHIL 290
            L + +NR              L  L L NNSL ++      L+         L SL  L
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL----GDLD-----PLASLKSLTYL 118

Query: 291 DISDNNIS 298
            I  N ++
Sbjct: 119 CILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 101 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160
             N  +   L L    I     L      +   +D S+N  +    ++   +L  L +  
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLT--GEIPERLAVGCVNLEFLALSNNNLKGH 218
           ++ N +          +  L  L L++N L   G++ + LA    +L +L +  N +   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 219 MFCRNFNLANLRQLQLEDNRFI 240
              R + +  + Q+++ D + +
Sbjct: 129 KHYRLYVIYKVPQVRVLDFQKV 150

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 13/84 (15%)

Query: 225 NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL 284
           N    R+L L   + I  I    +     + +  ++N +  +       +G     F  L
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL-------DG-----FPLL 63

Query: 285 YSLHILDISDNNISGSLPSCFHPL 308
             L  L +++N I          L
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQAL 87

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 34/185 (18%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMNFLRILDL 185
           +  L ++ N         + DI     L +L    +  N +   + SS  ++  L+ L L
Sbjct: 70  VTKLFLNGNK--------LTDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSL 119

Query: 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
             N ++ +I   L      LE L L NN +          L  L  L LEDN+ I +I  
Sbjct: 120 EHNGIS-DI-NGLV-HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ-ISDIV- 172

Query: 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305
            L+  + L+ LYL+ N +SD+                 L +L +L++          +  
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLR------------ALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 306 HPLYI 310
             L +
Sbjct: 221 SNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 24/168 (14%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
               ++   +    +       L S+     + + +  S+      +  +  L L+ N+L
Sbjct: 26  TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 80

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKC 250
           T +I + LA    NL +L L  N +K        +L  L+ L LE N  I +I   L   
Sbjct: 81  T-DI-KPLA-NLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNG-ISDIN-GLVHL 133

Query: 251 SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
             LE LYL NN ++DIT               +L  L  L + DN IS
Sbjct: 134 PQLESLYLGNNKITDIT------------VLSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 49/275 (17%), Positives = 80/275 (29%), Gaps = 64/275 (23%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
                 +  L                 + + ++ A N++IK  +     L      +  L
Sbjct: 22  AFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK-SVQGIQYLP----NVTKL 73

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIN---DSI 117
                                L    L+ IK         L N   L  LFL       +
Sbjct: 74  --------------------FLNGNKLTDIKP--------LANLKNLGWLFLDENKVKDL 105

Query: 118 GGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPS 172
                L      +L+ L + +N         I DI     LP L S  +  N +  +  +
Sbjct: 106 SSLKDLK-----KLKSLSLEHNG--------ISDINGLVHLPQLESLYLGNNKI--TDIT 150

Query: 173 SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQL 232
               +  L  L L  NQ++ +I      G   L+ L LS N++          L NL  L
Sbjct: 151 VLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVL 205

Query: 233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267
           +L     + +     S       +   + SL    
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 16/168 (9%)

Query: 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH 167
           E L L +  +            +L +L++  N  Q  +   + D L  L +  ++ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 168 GSIPSS-FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK----GHMFCR 222
            S+P   F ++  L  L L  NQL   +P  +      L+ L L+ N L+    G  F +
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG-AFDK 153

Query: 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN----SLSDI 266
              L NL+ L L  N+       +  +   L+ + L  N    S  +I
Sbjct: 154 ---LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEI 198

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHM 219
           T                L  L + + Q    +  R   G   L  L +  + L+      
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 220 FCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL 263
           F        L +L L  N  +  +     +  SL+ L L+ N L
Sbjct: 76  F---HFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 225 NLANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQ 283
              NL +L +E+ + +  +  + L     L  L +  + L  +           P  F  
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA----------PDAFHF 78

Query: 284 LYSLHILDISDNNISGSLPSCFHPLYIKKVHL 315
              L  L++S N +          L ++++ L
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 101 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160
               A      L   S+     +       ++  +  N+N Q    +       +L   +
Sbjct: 15  DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELH 69

Query: 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF 220
           +S N +  S  S   ++  L  L ++ N+L   +     +    L  L L NN L+    
Sbjct: 70  LSHNQI--SDLSPLKDLTKLEELSVNRNRLK-NLN---GIPSACLSRLFLDNNELRD--- 120

Query: 221 CRNF-NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPV 279
             +  +L NL  L + +N+ +  I   L   S LE L L+ N +++              
Sbjct: 121 TDSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNTG------------ 166

Query: 280 EFCQLYSLHILDISDNNIS 298
              +L  ++ +D++     
Sbjct: 167 GLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 43/266 (16%), Positives = 86/266 (32%), Gaps = 39/266 (14%)

Query: 7   ELYLSNNHFQIPIS-LEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSG 65
           E          PI+ + P    +   +       +  ++     L+     +Q+    + 
Sbjct: 1   ESIQRPT----PINQVFPDPGLANAVKQNLGKQSVT-DLVSQKELS----GVQNFNGDN- 50

Query: 66  YGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPI 125
               +     +    +L+++HLSH +++       L++  KLE L +  + +     L  
Sbjct: 51  --SNIQSLAGMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLK---NLNG 102

Query: 126 HPHRRLRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMNFL 180
            P   L  L + NN         + D      L +L   +I  N L        G ++ L
Sbjct: 103 IPSACLSRLFLDNNE--------LRDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKL 152

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
            +LDL  N++T             + ++ L+              L     ++  D R+I
Sbjct: 153 EVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

Query: 241 GEIPQSLSKCSSLEGLYLNNNSLSDI 266
              P  +S   S     +        
Sbjct: 210 S--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 24/180 (13%)

Query: 124 PIHPHRRLRFLDVSNNNFQGHIPVEIGDI-----LPSLFSFNISTNALHGSIPSSFGNMN 178
            +     L+ L +S+N         I D+     L  L   +++ N L     +   +  
Sbjct: 58  GMQFFTNLKELHLSHNQ--------ISDLSPLKDLTKLEELSVNRNRL--KNLNGIPSAC 107

Query: 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR 238
            L  L L +N+L     + L     NLE L++ NN LK  +      L+ L  L L  N 
Sbjct: 108 -LSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNE 161

Query: 239 FIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKN-HLEGPIPVEFCQLYSLHILDISDNNI 297
            I      L++   +  + L      +  +     L     V+      +    IS+   
Sbjct: 162 -ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGS 219

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 36/229 (15%), Positives = 73/229 (31%), Gaps = 36/229 (15%)

Query: 100 LLENNAKLETLFLINDSIGGPFRLPI-----HPHRRLRFLDVSNNNFQGHIPVEIGDIL- 153
           L    A + +L L  + +       +          +  LD+  N+F      E      
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 154 ---PSLFSFNISTNALHG----SIPSSFGNMNF-LRILDLSSNQLTGE----IPERLAVG 201
               S+ S N+  N L       +      +   +  L+L  N L  +    + + LA  
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 202 CVNLEFLALSNNNLKGHMFCRNF------NLANLRQLQLEDNRF----IGEIPQSLSKCS 251
             ++  L LS N L G                ++  L L  N      +  +        
Sbjct: 195 PASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253

Query: 252 SLEGLYLNNNSLSDITMPKNHLEGPIPV--EFCQLYSLHILDISDNNIS 298
            L+ +YL+ + + +++      E    +   F  +  + ++D +   I 
Sbjct: 254 HLQTVYLDYDIVKNMSK-----EQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 32/296 (10%), Positives = 84/296 (28%), Gaps = 52/296 (17%)

Query: 3   TSIEELYLSNNHFQ----IPISLEPLFNHSRLKRLWAYNNEIKAEITE--SHSLTAPNFQ 56
            ++  L LS N         +          +  L    N+  ++ +     + +     
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 57  LQSLLLSS---GYGDGVTFPKFLYHQHD-LEDVHLS--HIKMNG--KFPNWLLENNAKLE 108
           + SL L     G        + L      +  ++L   ++      +   +L    A + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 109 TLFLINDSIGGPFRLPI-----HPHRRLRFLDVSNNNFQGHIPVEIGDIL---PSLFSFN 160
           +L L  + +G      +          +  L++  N   G     +  +      L +  
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 161 ISTNALHG-------SIPSSFGNMNFLRILDLSSNQLTGE----IPERLAVGCVNLEFLA 209
           +  + +         ++ ++F N+  + ++D +  ++       I   +       +  +
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319

Query: 210 LSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265
           L N        C  F   +   ++             L+    L         L +
Sbjct: 320 LLNQ-------CLIFAQKHQTNIED------------LNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 40/299 (13%), Positives = 85/299 (28%), Gaps = 58/299 (19%)

Query: 3   TSIEELYLSNNHFQ----IPISLEPLFNHSRLKRLWAYNNEIKAEITE--SHSLTAPNFQ 56
             +  L LS N+      + +        + +  L    N +  + ++     L A    
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 57  LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS 116
           + SL LS                + L       +         L      +  L L  + 
Sbjct: 82  VTSLNLSG---------------NFLSYKSSDELV------KTLAAIPFTITVLDLGWND 120

Query: 117 IGGP-----FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP----SLFSFNISTNALH 167
                     +   +    +  L++  N+       E+  IL     ++ S N+  N L 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 168 ----GSIPSSFGNMNF-LRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNNNLKGH 218
                 +     ++   +  LDLS+N L  +    +    +    ++  L L  N L   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HG 239

Query: 219 MFCRNFNLA-----NLRQLQLEDNRF-------IGEIPQSLSKCSSLEGLYLNNNSLSD 265
               N  L      +L+ + L+ +            +  +      +  +  N   +  
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 35/231 (15%), Positives = 75/231 (32%), Gaps = 37/231 (16%)

Query: 100 LLENNAKLETLFLINDSIGGP-----FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP 154
                  + +L L  +++         +   +    +  L++S N+       E+  IL 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 155 S----LFSFNISTNALHG----SIPSSFGNMNF-LRILDLSSNQLTGE----IPERLAVG 201
           +    + S N+S N L       +  +   + F + +LDL  N  + +      +  +  
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 202 CVNLEFLALSNNNLK---GHMFCRNFNLAN--LRQLQLEDNRFIGEIPQSLSK-----CS 251
             ++  L L  N+L         +        +  L L  N    +    L+K      +
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 252 SLEGLYLNNNSLSDITMPK--NHLEGPIPVEFCQLYSLHILDISDNNISGS 300
           S+  L L+ N L   +  +                  +  L++  N + G 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPN-------HVVSLNLCLNCLHGP 240

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNR 238
           +R L L + +      E L    VNLEFL+L N  L       N   L  L++L+L +NR
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENR 82

Query: 239 FIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
             G +     K  +L  L L+ N L DI    + LE        +L  L  LD+ +  ++
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDI----STLE-----PLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 32/140 (22%), Positives = 43/140 (30%), Gaps = 6/140 (4%)

Query: 103 NNAKLETLFLINDSIGGPFRLPIHPHRR-LRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161
             A +  L L N          +      L FL + N        V     LP L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTG-EIPERLAVGCVNLEFLALSNNNLKGHMF 220
           S N + G +      +  L  L+LS N+L      E L      L+ L L N  +     
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLND 137

Query: 221 CRNFNLANLRQLQLEDNRFI 240
            R      L QL   D    
Sbjct: 138 YRESVFKLLPQLTYLDGYDR 157

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNR 238
           ++ L L +++      E L      LEFL+  N  L       N   L  L++L+L DNR
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNR 75

Query: 239 FIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298
             G +     KC +L  L L+ N + D+    + +E        +L +L  LD+ +  ++
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDL----STIE-----PLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 222 RNFNLANLRQLQLEDNRF-IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVE 280
           RN   +++++L L+++R   G++     +   LE L   N  L+ I              
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA------------N 59

Query: 281 FCQLYSLHILDISDNNISGSLPSCFHPL 308
             +L  L  L++SDN +SG L       
Sbjct: 60  LPKLNKLKKLELSDNRVSGGLEVLAEKC 87

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190
           ++ L + N+         + D    L   +     L  SI ++   +N L+ L+LS N++
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRV 76

Query: 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKC 250
           +G   E LA  C NL  L LS N +K        +L+ +               + L K 
Sbjct: 77  SG-GLEVLAEKCPNLTHLNLSGNKIK--------DLSTI---------------EPLKKL 112

Query: 251 SSLEGLYLNNNSLSDI 266
            +L+ L L N  ++++
Sbjct: 113 ENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 6/134 (4%)

Query: 102 ENNAKLETLFLINDSIG-GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160
              + ++ L L N     G           L FL   N        +     L  L    
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLE 70

Query: 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTG-EIPERLAVGCVNLEFLALSNNNLKGHM 219
           +S N + G +         L  L+LS N++      E L     NL+ L L N  +    
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLN 129

Query: 220 FCRNFNLANLRQLQ 233
             R      L QL 
Sbjct: 130 DYRENVFKLLPQLT 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 169 SIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFN 225
            +P    N   L ++DLS+N+++  +  +       L  L LS N L+      F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 226 LANLRQLQLEDNRFIGEIPQ-SLSKCSSLEGLYLNNN 261
           L +LR L L  N  I  +P+ + +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDN 237
             L L  NQ T  +P+ L+    +L  + LSNN +       F    N+  L  L L  N
Sbjct: 34  TELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFS---NMTQLLTLILSYN 88

Query: 238 RFIGEIPQSL-----SKCSSLEGLYLNNNSLSDI 266
           R      + +         SL  L L+ N +S +
Sbjct: 89  RL-----RCIPPRTFDGLKSLRLLSLHGNDISVV 117

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 170 IPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANL 229
           + ++   +   + L LS+N +  +I   L+ G  NL  L+L  N +K  +   +     L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 230 RQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHI 289
            +L +  N+ I  +   + K  +L  LY++NN +++       ++     +   L  L  
Sbjct: 96  EELWISYNQ-IASL-SGIEKLVNLRVLYMSNNKITNW----GEID-----KLAALDKLED 144

Query: 290 LDISDNNISG-SLPSCFHPLYIKKV 313
           L ++ N +      +     Y  +V
Sbjct: 145 LLLAGNPLYNDYKENNATSEYRIEV 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 174 FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK---GHMFCRNFNLANLR 230
           FG +  L  L+L  NQLT  I      G  +++ L L  N +K     MF     L  L+
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLG---LHQLK 105

Query: 231 QLQLEDNRFIGEIPQ-SLSKCSSLEGLYLNNN 261
            L L DN+ I  +   S    +SL  L L +N
Sbjct: 106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG---HMFCRNFNLANLRQLQLEDN 237
             L L+ N+L     + L     +L  L L  N L G   + F      +++++LQL +N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 238 RFIGEIPQSL-SKCSSLEGLYLNNNSLSDI 266
           + I EI   +      L+ L L +N +S +
Sbjct: 89  K-IKEISNKMFLGLHQLKTLNLYDNQISCV 117

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.5 bits (109), Expect = 5e-06
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 22/188 (11%)

Query: 127 PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF-NISTNALHGSIPSSFGNMNF--LRIL 183
            H    F    +   Q    +E  D+ P L +   ++   + G+   S G      L+ L
Sbjct: 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL 198

Query: 184 DLSSNQLTGEIPERLAVG-CVNLEFLALS--NNNLKGHMFCRNF-------NLANLRQLQ 233
           ++ S  L   + E +      NLE L L     +         F          NL+ L 
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258

Query: 234 LEDNRFIGEIPQSLSKC---SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHIL 290
           + D      + +   +      LE + ++   L+D           +     ++  L  +
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR------LLLDHVDKIKHLKFI 312

Query: 291 DISDNNIS 298
           ++  N +S
Sbjct: 313 NMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 19/167 (11%)

Query: 99  WLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGD-ILPSL- 156
            +L+    L  L +          +   P   L+ L++ +      +  +I    LP+L 
Sbjct: 166 PVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 157 ------FSFNISTNALHGSIPSSFGNMNF--LRILDLSSNQLTGEIPERLAVGCV--NLE 206
                    +   +         F    F  L+ L +   +    + E      +   LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 207 FLALSNNNLKGH---MFCRNF-NLANLRQLQLEDNRFIGEIPQSLSK 249
            + +S   L      +   +   + +L+ + ++ N    E+ + L K
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 163 TNALHGSIPSSFGNMNFLRILDLSSNQLT---GEIPERLAVGCVNLEFLALSNNNLK--- 216
            N +    P  F ++  L+ L L SNQL      + + L      L  L L  N L    
Sbjct: 49  DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTVLP 104

Query: 217 -GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266
              +F R   L +L++L +  N+   E+P+ + + + L  L L+ N L  I
Sbjct: 105 SA-VFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSI 150

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 16/246 (6%)

Query: 26  NHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDV 85
             +  + LW   +     +    +    +  + +      + D      F   +  ++ +
Sbjct: 41  RLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHM 98

Query: 86  HLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSN-NNFQGH 144
            LS+  +     + +L   +KL+ L L    +  P    +  +  L  L++S  + F   
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 145 IPVEIGDILPSLFSFNIS------TNALHGSIPSSFGNMNFLRILDLS--SNQLTGEIPE 196
               +      L   N+S         +  ++         +  L+LS     L      
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH---VSETITQLNLSGYRKNLQKSDLS 215

Query: 197 RLAVGCVNLEFLALSN-NNLKGHMFCRNFNLANLRQLQLEDNRFIGEI-PQSLSKCSSLE 254
            L   C NL  L LS+   LK   F   F L  L+ L L     I       L +  +L+
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275

Query: 255 GLYLNN 260
            L +  
Sbjct: 276 TLQVFG 281

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%)

Query: 160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG-- 217
           ++ TN+L       F  +  L  L L  N+L   +P  +     +L +L LS N L+   
Sbjct: 34  DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 218 -HMFCRNFNLANLRQLQLEDNRFIGEIPQSLS-----KCSSLEGLYLNNNSLSDI 266
             +F +   L  L++L L  N+      QSL      K + L+ L L  N L  +
Sbjct: 93  NGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKSV 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 55/380 (14%), Positives = 101/380 (26%), Gaps = 91/380 (23%)

Query: 2   LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWA---YNNE--IKAEITESHSLTAPNFQ 56
           L  I+  + S +     I L      + L+RL     Y N   +   +  + +  A N  
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 57  LQSLLLS--SGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL---- 110
            + LL +      D ++     +   D   + L+  ++      +L   + + + L    
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLPREV 322

Query: 111 -----FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHI--------PVEIGDILPSLF 157
                  ++  I     +         +  V+ +     I        P E   +   L 
Sbjct: 323 LTTNPRRLS-IIAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 158 SFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN------------- 204
            F  S +     IP+         +L L    +       +                   
Sbjct: 380 VFPPSAH-----IPTI--------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 205 ------LEFLALSNNNLKGH-------MFCRNFNLANLRQLQLEDN---RFIG----EIP 244
                 LE      N    H          + F+  +L    L D      IG     I 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHLKNIE 485

Query: 245 QSLSKCSSLEGLYLN----NNSLSDITMPKNHLEGPIPVEFCQL--YSLHILDISD---- 294
               + +    ++L+       +   +   N     +     QL  Y  +I D       
Sbjct: 486 HP-ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYER 543

Query: 295 --NNISGSLPSCFHPLYIKK 312
             N I   LP     L   K
Sbjct: 544 LVNAILDFLPKIEENLICSK 563

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 24/149 (16%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMNFLRILDLSSNQ 189
           L +L ++ N  Q  +P  + D L +L    +  N L  S+P   F  +  L  L+L+ NQ
Sbjct: 87  LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 190 LTGEIPERLAVGCVNLEFLALSNNNLK----GHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245
           L   +P+ +     NL  L LS N L+    G +F +   L  L+ L+L  N+ +  +P 
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDK---LTQLKDLRLYQNQ-LKSVPD 198

Query: 246 ----SLSKCSSLEGLYLNNN----SLSDI 266
                L   +SL+ ++L++N    +   I
Sbjct: 199 GVFDRL---TSLQYIWLHDNPWDCTCPGI 224

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 35/185 (18%), Positives = 58/185 (31%), Gaps = 46/185 (24%)

Query: 100 LLENNAKLETLFLINDSIGGPFRLPIHPH-RRLRFLDVSNNNFQGHIPVEIGD----ILP 154
           L      L+ + L +  +       + P   R R L +  N+        +G      L 
Sbjct: 96  LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS--------LGPEACKDLR 147

Query: 155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG---CVNLEFLALS 211
            L   +                   +  L LS+N LT      L  G     ++  L+L 
Sbjct: 148 DLLLHDQCQ----------------ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 212 NNNLK-------GHMFCRNFNLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNN 260
           +  L             RN     L++L +  N         + ++  +  SLE L+L  
Sbjct: 192 HTGLGDEGLELLAAQLDRN---RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 261 NSLSD 265
           N LS 
Sbjct: 249 NELSS 253

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 19/180 (10%)

Query: 101 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160
           ++N   LE    I   +G   R  + P   L  L   +  FQ        ++L SL   N
Sbjct: 22  IKNLDALENAQAIKKKLGKLGRQVLPPSELLDHL-FFHYEFQNQRFSA--EVLSSLRQLN 78

Query: 161 ISTNALHGSIPSSFG-----NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215
           ++   +     +          + L  ++L+S QL       L    +    L L  N+L
Sbjct: 79  LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138

Query: 216 K---GHMFCR--NFNLANLRQLQLEDNRFIGE-----IPQSLSKCSSLEGLYLNNNSLSD 265
                         +   +  L+L +N  +       + + L+  +S+  L L +  L D
Sbjct: 139 GPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.99
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.6
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.68
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.82
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.24

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1e-38  Score=299.87  Aligned_cols=250  Identities=32%  Similarity=0.389  Sum_probs=110.5

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccc-cccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      ++|++|++++|.+.+..| ..+.++++|++|++++|.+.+ +|.. +.+  .+  +|++|++ ++|.+.+.+|..+.+++
T Consensus       294 ~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~--l~--~L~~L~L-s~n~l~~~~p~~l~~l~  367 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLK--MR--GLKVLDL-SFNEFSGELPESLTNLS  367 (768)
T ss_dssp             TTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEECCHHHHTT--CT--TCCEEEC-CSSEEEECCCTTHHHHT
T ss_pred             CcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcCCHHHHhc--CC--CCCEEeC-cCCccCccccHHHHhhh
Confidence            344444444444443333 234444444444444444432 3322 221  22  4444444 44444433443333332


Q ss_pred             -CCCeEEecCceecccCChhhhhc--ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327           81 -DLEDVHLSHIKMNGKFPNWLLEN--NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF  157 (315)
Q Consensus        81 -~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  157 (315)
                       +|++|++++|.+++.+|..+ ..  +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|+
T Consensus       368 ~~L~~L~Ls~N~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~  445 (768)
T 3rgz_A          368 ASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLR  445 (768)
T ss_dssp             TTCSEEECCSSEEEEECCTTT-TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCC
T ss_pred             cCCcEEEccCCCcCCCcChhh-hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCC
Confidence             33333333333332222221 11  233444444444444344444444555555555555554444444443 44555


Q ss_pred             EEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCC
Q 039327          158 SFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN  237 (315)
Q Consensus       158 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  237 (315)
                      .|++++|.+++..|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus       446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  524 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN  524 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence            555555555444444444555555555555555444444333 3445555555555554444444444555555555555


Q ss_pred             ccccccccccccCCCCcEEEccCC
Q 039327          238 RFIGEIPQSLSKCSSLEGLYLNNN  261 (315)
Q Consensus       238 ~~~~~~~~~~~~~~~L~~L~l~~n  261 (315)
                      .+.+.+|..++.+++|+.|++++|
T Consensus       525 ~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          525 SFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CCEEECCGGGGGCTTCCEEECCSS
T ss_pred             cccCcCCHHHcCCCCCCEEECCCC
Confidence            554444444444444444444444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-38  Score=299.28  Aligned_cols=299  Identities=29%  Similarity=0.415  Sum_probs=187.5

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCC-----------------------CCcccc
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLT-----------------------APNFQL   57 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-----------------------~~~~~L   57 (315)
                      +++|++|++++|.+.+.+|...+.++++|++|++++|.+++ +|..+..+.                       .+..+|
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            56677777777777666665446677777777777776653 444333200                       012256


Q ss_pred             EEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcc
Q 039327           58 QSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVS  137 (315)
Q Consensus        58 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  137 (315)
                      ++|++ ++|.+.+..|..+.++++|+.|++++|.+++.+|..+ +.+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       397 ~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          397 QELYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD  474 (768)
T ss_dssp             CEEEC-CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cEEEC-CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence            66666 6666666666666667777777777777766666654 666777777777777666666666667777777777


Q ss_pred             cCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCC
Q 039327          138 NNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG  217 (315)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  217 (315)
                      +|.+.+.+|..+.. +++|++|++++|.+++..|..++.+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+
T Consensus       475 ~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          475 FNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             SSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEES
T ss_pred             CCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCC
Confidence            77766666666554 66777777777777666666677777777777777777666666554 46677777777666543


Q ss_pred             ccccc----------------------------------------------------------------------ccCCC
Q 039327          218 HMFCR----------------------------------------------------------------------NFNLA  227 (315)
Q Consensus       218 ~~~~~----------------------------------------------------------------------~~~~~  227 (315)
                      ..|..                                                                      +..++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            33221                                                                      22345


Q ss_pred             CCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhcccCCCCEEecc
Q 039327          228 NLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYSLHILDIS  293 (315)
Q Consensus       228 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~  293 (315)
                      .|+.|++++|.+++.+|..++.++.|+.|++++|.+..              +++++|+++|.+|..+..+++|+.|+++
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            56667777777766666666777777777776665542              4455555555555555555555555555


Q ss_pred             cCccCCCCCCC
Q 039327          294 DNNISGSLPSC  304 (315)
Q Consensus       294 ~n~~~~~~~~~  304 (315)
                      +|++++.+|+.
T Consensus       713 ~N~l~g~iP~~  723 (768)
T 3rgz_A          713 NNNLSGPIPEM  723 (768)
T ss_dssp             SSEEEEECCSS
T ss_pred             CCcccccCCCc
Confidence            55555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.3e-35  Score=261.55  Aligned_cols=294  Identities=19%  Similarity=0.157  Sum_probs=249.2

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +++++|++++|.+.+..+ ..+.++++|++|+|++|.++++ |..+.+  ++  +|++|++ ++|.+....+..+.++++
T Consensus        32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNN--LF--NLRTLGL-RSNRLKLIPLGVFTGLSN  105 (477)
T ss_dssp             TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCSCCTTSSTTCTT
T ss_pred             CCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhC--Cc--cCCEEEC-CCCcCCccCcccccCCCC
Confidence            478999999999985444 6899999999999999999985 555554  55  9999999 889988666667889999


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      |++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus       106 L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          106 LTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             CCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEE
T ss_pred             CCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeC
Confidence            999999999998766665 489999999999999998888889999999999999999998 677665556899999999


Q ss_pred             ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      .+|.+.+..+..+..+++|++|++++|...+.++...+. ..+|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred             CCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence            999998777778899999999999998877677777664 5689999999999988766778889999999999999987


Q ss_pred             ccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      ..+..+..+++|+.|++++|++..          ..+.+|..+++|+.|++++|.+++..+..+. +++|+.|++
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAV----------VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL  327 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSE----------ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred             cChhhccccccCCEEECCCCccce----------ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence            777788889999999999988775          3367788888888888888888866666666 788888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.5e-35  Score=263.08  Aligned_cols=296  Identities=18%  Similarity=0.139  Sum_probs=187.7

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cc-cccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      ++|++|++++|.+.+..+ ..+.++++|++|++++|.+.. ++ ..+.+  ++  +|++|++ ++|.+.+..|..+.+++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~l~  103 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LS--SLIILKL-DYNQFLQLETGAFNGLA  103 (455)
T ss_dssp             TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTT--CT--TCCEEEC-TTCTTCEECTTTTTTCT
T ss_pred             CccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccc--cc--cCCEEeC-CCCccCccChhhccCcc
Confidence            568899999998875545 578889999999999988864 43 33443  55  8999999 88888877788888899


Q ss_pred             CCCeEEecCceecccCChh-hhhcccccceeEeecCCCcCcCcCC-CcCCCCccEEEcccCcCCCCCchhhhhc------
Q 039327           81 DLEDVHLSHIKMNGKFPNW-LLENNAKLETLFLINDSIGGPFRLP-IHPHRRLRFLDVSNNNFQGHIPVEIGDI------  152 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~------  152 (315)
                      +|++|++++|.+++..+.. .++.+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+...      
T Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred             cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence            9999999999887644432 2477888999999999888766655 7888889999998888875545444321      


Q ss_pred             ---------------------------CCCceEEEeecCcCCCCCCccccC-----------------------------
Q 039327          153 ---------------------------LPSLFSFNISTNALHGSIPSSFGN-----------------------------  176 (315)
Q Consensus       153 ---------------------------~~~L~~L~l~~n~~~~~~~~~l~~-----------------------------  176 (315)
                                                 +++|++|++++|.+++..|..+..                             
T Consensus       184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  263 (455)
T 3v47_A          184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD  263 (455)
T ss_dssp             EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred             ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence                                       134555555554443222211110                             


Q ss_pred             ----------CCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccc
Q 039327          177 ----------MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQS  246 (315)
Q Consensus       177 ----------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  246 (315)
                                .++|+.+++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..
T Consensus       264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CCTTTTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             CcccccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence                      123444444444444222222 223445555555555554444444445555555555555554444444


Q ss_pred             cccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       247 ~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      +..+++|++|++++|++          .+..|.++..+++|+.|++++|++++..+..+. +++|++|++
T Consensus       343 ~~~l~~L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHI----------RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             GTTCTTCCEEECCSSCC----------CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             hcCcccCCEEECCCCcc----------cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence            44555555555555444          445567777788888888888888755555555 777777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-35  Score=272.88  Aligned_cols=302  Identities=18%  Similarity=0.184  Sum_probs=239.8

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeeccccc-ccc--cccccccC----CCCccccEEEEeccCCCCccccc
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNE-IKA--EITESHSL----TAPNFQLQSLLLSSGYGDGVTFP   73 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~   73 (315)
                      ++++|++|++++|.+.+.+| ..+.++++|++|++++|. +++  +|..+.++    ..+  +|++|++ ++|.+. .+|
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~--~L~~L~L-~~n~l~-~ip  321 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE--KIQIIYI-GYNNLK-TFP  321 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG--TCCEEEC-CSSCCS-SCC
T ss_pred             ccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC--CCCEEEC-CCCcCC-ccC
Confidence            37899999999999998999 689999999999999998 885  78776541    014  8999999 889988 788


Q ss_pred             c--ccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCC-ccEEEcccCcCCCCCchhhh
Q 039327           74 K--FLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRR-LRFLDVSNNNFQGHIPVEIG  150 (315)
Q Consensus        74 ~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~  150 (315)
                      .  .+.++++|++|++++|.+++.+| . ++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+.
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~  397 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD  397 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred             chhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence            8  89999999999999999998888 4 488899999999999887 67778888888 999999999888 7877654


Q ss_pred             hc-CCCceEEEeecCcCCCCCCcccc-------CCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327          151 DI-LPSLFSFNISTNALHGSIPSSFG-------NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR  222 (315)
Q Consensus       151 ~~-~~~L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  222 (315)
                      .. +++|++|++++|.+++..|..+.       .+++|++|++++|.+. .+|...+..+++|+.|++++|.+.......
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~  476 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNS  476 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred             hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence            31 23788888888888877777776       6778888888888887 777776666778888888888877443333


Q ss_pred             ccCC-------CCCCEEEcCCCccccccccccc--cCCCCcEEEccCCcccc-------------ccC------CCCccc
Q 039327          223 NFNL-------ANLRQLQLEDNRFIGEIPQSLS--KCSSLEGLYLNNNSLSD-------------ITM------PKNHLE  274 (315)
Q Consensus       223 ~~~~-------~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~i~~-------------l~l------~~~~l~  274 (315)
                      +...       ++|+.|++++|.++ .+|..+.  .+++|++|++++|++..             +++      ++|.+.
T Consensus       477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred             hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence            3322       27777888877777 5666665  77777788777776654             334      567788


Q ss_pred             cCCchhhcccCCCCEEecccCccCCCCCCCccccccceecC
Q 039327          275 GPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL  315 (315)
Q Consensus       275 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l  315 (315)
                      +.+|.+++.+++|+.|++++|.+ +.+|..+. ++|+.|++
T Consensus       556 ~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~L  594 (636)
T 4eco_A          556 REWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDI  594 (636)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEEC
T ss_pred             ccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEEC
Confidence            88999999999999999999999 47787755 78888765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3e-35  Score=261.09  Aligned_cols=287  Identities=20%  Similarity=0.138  Sum_probs=241.1

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccc--cc
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKF--LY   77 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~   77 (315)
                      ++++|++|++++|.+.+.++...+.++++|++|++++|.++++ |..+.+  ++  +|++|++ ++|.+.+..+..  +.
T Consensus        52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~~  126 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG--LA--NLEVLTL-TQCNLDGAVLSGNFFK  126 (455)
T ss_dssp             SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT--CT--TCCEEEC-TTSCCBTHHHHSSTTT
T ss_pred             cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC--cc--cCCEEeC-CCCCCCccccCccccc
Confidence            4789999999999997677667899999999999999999885 666654  55  9999999 999998755544  88


Q ss_pred             cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcC------------------------------
Q 039327           78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHP------------------------------  127 (315)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------------------------------  127 (315)
                      .+++|++|++++|.+++..|..++..+++|++|++++|.+.+..+..+..                              
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  206 (455)
T 3v47_A          127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG  206 (455)
T ss_dssp             TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred             CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence            99999999999999998778775689999999999999988766655543                              


Q ss_pred             ----CCCccEEEcccCcCCCCCchhhhhc--------------------------------------CCCceEEEeecCc
Q 039327          128 ----HRRLRFLDVSNNNFQGHIPVEIGDI--------------------------------------LPSLFSFNISTNA  165 (315)
Q Consensus       128 ----~~~L~~L~l~~~~~~~~~~~~~~~~--------------------------------------~~~L~~L~l~~n~  165 (315)
                          +++|++|++++|.+.+..|..+...                                      .++|++|++++|.
T Consensus       207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence                3678889998887764444333221                                      2579999999999


Q ss_pred             CCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccccc
Q 039327          166 LHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ  245 (315)
Q Consensus       166 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  245 (315)
                      +++..|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            99888888999999999999999998444444 44699999999999999988888999999999999999999988889


Q ss_pred             ccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCC
Q 039327          246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS  303 (315)
Q Consensus       246 ~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  303 (315)
                      .+..+++|++|++++|+++.+.          +..+..+++|+.|++++|++++..|.
T Consensus       366 ~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQLKSVP----------DGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hccccccccEEECCCCccccCC----------HhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999999999999888532          45678999999999999999988774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.4e-35  Score=271.38  Aligned_cols=301  Identities=19%  Similarity=0.229  Sum_probs=257.0

Q ss_pred             CCCccceEEeecCccccc-----------------CCCcccC--CCcccceeecccccccc-cccccccCCCCccccEEE
Q 039327            1 HLTSIEELYLSNNHFQIP-----------------ISLEPLF--NHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSL   60 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L   60 (315)
                      ++++|++|++++|.+.+.                 +| ..+.  ++++|++|++++|.+.+ +|..+.+  ++  +|++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~--l~--~L~~L  278 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA--LP--EMQLI  278 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTT--CS--SCCEE
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhc--CC--CCCEE
Confidence            478999999999999875                 88 5788  99999999999999877 8877765  66  99999


Q ss_pred             EeccCCC-Ccc-ccccccccC------CCCCeEEecCceecccCCh--hhhhcccccceeEeecCCCcCcCcCCCcCCCC
Q 039327           61 LLSSGYG-DGV-TFPKFLYHQ------HDLEDVHLSHIKMNGKFPN--WLLENNAKLETLFLINDSIGGPFRLPIHPHRR  130 (315)
Q Consensus        61 ~l~~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  130 (315)
                      ++ ++|. +++ .+|..+..+      ++|++|++++|.++ .+|.  .+ +.+++|++|++++|.+.+.+| .+..+++
T Consensus       279 ~L-s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~  354 (636)
T 4eco_A          279 NV-ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIK  354 (636)
T ss_dssp             EC-TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred             EC-cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence            99 8887 888 889888776      99999999999999 8887  64 899999999999999998888 8999999


Q ss_pred             ccEEEcccCcCCCCCchhhhhcCCC-ceEEEeecCcCCCCCCccccCCC--CCcEEEccCccccCcCchhhcc------C
Q 039327          131 LRFLDVSNNNFQGHIPVEIGDILPS-LFSFNISTNALHGSIPSSFGNMN--FLRILDLSSNQLTGEIPERLAV------G  201 (315)
Q Consensus       131 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~------~  201 (315)
                      |++|++++|.++ .+|..+.. +++ |++|++++|.++ .+|..+...+  +|++|++++|.+.+..|..+..      .
T Consensus       355 L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  431 (636)
T 4eco_A          355 LASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK  431 (636)
T ss_dssp             ESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred             CCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence            999999999998 88888776 777 999999999999 7888777654  8999999999998766655430      3


Q ss_pred             CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccccccccc-C-------CCCcEEEccCCcccc--------
Q 039327          202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSK-C-------SSLEGLYLNNNSLSD--------  265 (315)
Q Consensus       202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~-------~~L~~L~l~~n~i~~--------  265 (315)
                      .++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..... .       ++|++|++++|.+..        
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~  510 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT  510 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence            678999999999999766666777999999999999998 55544332 2       289999999987654        


Q ss_pred             -------ccCCCCccccCCchhhcccCCCCEEec------ccCccCCCCCCCcc-ccccceecC
Q 039327          266 -------ITMPKNHLEGPIPVEFCQLYSLHILDI------SDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       266 -------l~l~~~~l~~~~~~~l~~~~~L~~L~l------~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                             +++++|.+.+ +|..+..+++|+.|++      ++|.+.+.+|..+. +++|++|++
T Consensus       511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L  573 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI  573 (636)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence                   6677888887 8888889999999999      56778888898888 899998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1e-33  Score=259.89  Aligned_cols=137  Identities=23%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327          125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN  204 (315)
Q Consensus       125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  204 (315)
                      ++.+++|++|++++|.++ .+|..+.. +++|++|++.+|.+++..|..+..+++|++|++++|.+.+.++...+..+++
T Consensus       274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             hccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            445555666666665555 55555443 5566666666665554444455555555555555555544444443334555


Q ss_pred             ccEEEccCCCCCCcc--cccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcc
Q 039327          205 LEFLALSNNNLKGHM--FCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL  263 (315)
Q Consensus       205 L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  263 (315)
                      |+.|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            666666655555433  34445555555555555555544455555555555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.4e-34  Score=266.53  Aligned_cols=297  Identities=19%  Similarity=0.207  Sum_probs=193.3

Q ss_pred             CCccceEEeecCcccc-----------------cCCCcccC--CCcccceeecccccccc-cccccccCCCCccccEEEE
Q 039327            2 LTSIEELYLSNNHFQI-----------------PISLEPLF--NHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLL   61 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~-----------------~~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~   61 (315)
                      +++|++|+|++|.+.+                 .+| ..+.  ++++|++|++++|.+.+ +|..+.+  ++  +|++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~--L~--~L~~L~  521 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYD--LP--ELQSLN  521 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGG--CS--SCCEEE
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCCCCCccChHHHhC--CC--CCCEEE
Confidence            5677788888887775                 266 3555  77778888887777655 6666554  55  777777


Q ss_pred             eccCCC-Ccc-ccccccccCC-------CCCeEEecCceecccCCh--hhhhcccccceeEeecCCCcCcCcCCCcCCCC
Q 039327           62 LSSGYG-DGV-TFPKFLYHQH-------DLEDVHLSHIKMNGKFPN--WLLENNAKLETLFLINDSIGGPFRLPIHPHRR  130 (315)
Q Consensus        62 l~~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  130 (315)
                      + ++|. +.+ .+|..+.+++       +|++|++++|.++ .+|.  .+ +.+++|++|++++|.+. .+| .+..+++
T Consensus       522 L-s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          522 I-ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             C-TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             C-cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            7 6665 666 5665554443       7777777777776 6665  43 66777777777777666 455 5666666


Q ss_pred             ccEEEcccCcCCCCCchhhhhcCCC-ceEEEeecCcCCCCCCccccCC-------------------------------C
Q 039327          131 LRFLDVSNNNFQGHIPVEIGDILPS-LFSFNISTNALHGSIPSSFGNM-------------------------------N  178 (315)
Q Consensus       131 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~-------------------------------~  178 (315)
                      |++|++++|.+. .+|..+.. +++ |+.|++++|.++ .+|..+...                               +
T Consensus       597 L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          597 LTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             ESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             ceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            666666666666 56655544 445 666666666555 344333222                               2


Q ss_pred             CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccC-------CCCCCEEEcCCCccccccccccc--c
Q 039327          179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFN-------LANLRQLQLEDNRFIGEIPQSLS--K  249 (315)
Q Consensus       179 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~~--~  249 (315)
                      +|+.|++++|.+. .+|...+..+++|+.|++++|.+.......+..       +++|+.|++++|.++ .+|..+.  .
T Consensus       674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~  751 (876)
T 4ecn_A          674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT  751 (876)
T ss_dssp             CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred             CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence            4555555555555 555555545667777777777766433333322       226777777777776 5666665  6


Q ss_pred             CCCCcEEEccCCcccc-------------ccC------CCCccccCCchhhcccCCCCEEecccCccCCCCCCCcccccc
Q 039327          250 CSSLEGLYLNNNSLSD-------------ITM------PKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYI  310 (315)
Q Consensus       250 ~~~L~~L~l~~n~i~~-------------l~l------~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L  310 (315)
                      +++|+.|++++|.+..             +++      ++|.+.+.+|.++..+++|+.|++++|++ +.+|..+. ++|
T Consensus       752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L  829 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQL  829 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SSS
T ss_pred             CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CCC
Confidence            7777777777776554             334      34777888888888899999999999988 57777654 677


Q ss_pred             ceecC
Q 039327          311 KKVHL  315 (315)
Q Consensus       311 ~~l~l  315 (315)
                      +.|+|
T Consensus       830 ~~LdL  834 (876)
T 4ecn_A          830 YILDI  834 (876)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            77765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-34  Score=261.38  Aligned_cols=293  Identities=20%  Similarity=0.167  Sum_probs=242.7

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      .|+++++++|.+.+ ++...+.++++|++|++++|.++.+|..+..  .+  +|++|++ ++|.+.+..|..+..+++|+
T Consensus       255 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~  328 (606)
T 3t6q_A          255 SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGLVG--LS--TLKKLVL-SANKFENLCQISASNFPSLT  328 (606)
T ss_dssp             EEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CT--TCCEEEC-TTCCCSBGGGGCGGGCTTCS
T ss_pred             ceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccCCCChhhcc--cc--cCCEEEC-ccCCcCcCchhhhhccCcCC
Confidence            68999999999984 4446799999999999999999999888765  56  9999999 99999988888899999999


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcC--cCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      +|++++|.+.+.++...+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+.. +++|++|++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l  407 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDL  407 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTTCSEEEC
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-CccCCeEEC
Confidence            99999999887777665689999999999999988655  678899999999999999987444555554 889999999


Q ss_pred             ecCcCCCCCCc-cccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCc---ccccccCCCCCCEEEcCCC
Q 039327          162 STNALHGSIPS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGH---MFCRNFNLANLRQLQLEDN  237 (315)
Q Consensus       162 ~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n  237 (315)
                      ++|.+++..+. .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+.   .+..+..+++|++|++++|
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT-TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH-HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence            99998865544 4888999999999999998444444 44689999999999998762   2356778999999999999


Q ss_pred             ccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       238 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      .+++..|..+..+++|++|++++|++..          ..|.++..+++| .|++++|++++..|..+. +++|+++++
T Consensus       487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          487 DLSSIDQHAFTSLKMMNHVDLSHNRLTS----------SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL  554 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCG----------GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred             ccCccChhhhccccCCCEEECCCCccCc----------CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence            9998888889999999999999988775          346677777777 777777777766666666 777777664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=250.09  Aligned_cols=281  Identities=18%  Similarity=0.106  Sum_probs=243.3

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      ++++|++|++++|.+.+..+ ..+.++++|++|++++|.++.+|..... .++  +|++|++ ++|.+.+..+..+..++
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~--~L~~L~L-s~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFT-GLS--NLTKLDI-SENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSST-TCT--TCCEEEC-TTSCCCEECTTTTTTCT
T ss_pred             CCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCccccc-CCC--CCCEEEC-CCCccccCChhHccccc
Confidence            47899999999999986556 6899999999999999999998765432 255  9999999 99999988888999999


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN  160 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  160 (315)
                      +|++|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus       129 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             TCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEE
T ss_pred             cCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcccCcccceee
Confidence            9999999999998666655 489999999999999998766667899999999999999998 45544444589999999


Q ss_pred             eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +++|...+.++.......+|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  285 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA  285 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred             CCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence            9998877677766666779999999999998 777666667999999999999999888888999999999999999999


Q ss_pred             cccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327          241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG  299 (315)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~  299 (315)
                      +..+..+..+++|++|++++|.++.+.          +..|..+++|+.|++++|.+..
T Consensus       286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          286 VVEPYAFRGLNYLRVLNVSGNQLTTLE----------ESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             EECTTTBTTCTTCCEEECCSSCCSCCC----------GGGBSCGGGCCEEECCSSCEEC
T ss_pred             eECHHHhcCcccCCEEECCCCcCceeC----------HhHcCCCcccCEEEccCCCccC
Confidence            888899999999999999999887533          5678889999999999998864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-33  Score=264.66  Aligned_cols=279  Identities=20%  Similarity=0.289  Sum_probs=202.2

Q ss_pred             CCCcccCCCcccceeecccccccc------------------cccccc--cCCCCccccEEEEeccCCCCcccccccccc
Q 039327           19 ISLEPLFNHSRLKRLWAYNNEIKA------------------EITESH--SLTAPNFQLQSLLLSSGYGDGVTFPKFLYH   78 (315)
Q Consensus        19 ~~~~~~~~~~~L~~L~l~~~~~~~------------------~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~   78 (315)
                      +| ..+.++++|++|+|++|.+++                  +|..+.  +  ++  +|++|++ ++|.+.+.+|..+.+
T Consensus       440 IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--L~--~L~~L~L-s~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          440 IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN--LK--DLTDVEL-YNCPNMTQLPDFLYD  513 (876)
T ss_dssp             EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CT--TCCEEEE-ESCTTCCSCCGGGGG
T ss_pred             hh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc--CC--CCCEEEC-cCCCCCccChHHHhC
Confidence            55 468899999999999999998                  888865  4  55  9999999 999999999999999


Q ss_pred             CCCCCeEEecCce-ecc-cCChhhhhccc-------ccceeEeecCCCcCcCcC--CCcCCCCccEEEcccCcCCCCCch
Q 039327           79 QHDLEDVHLSHIK-MNG-KFPNWLLENNA-------KLETLFLINDSIGGPFRL--PIHPHRRLRFLDVSNNNFQGHIPV  147 (315)
Q Consensus        79 ~~~L~~L~l~~~~-~~~-~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~  147 (315)
                      +++|+.|++++|+ +++ .+|..+ +.++       +|++|++++|.+. .+|.  .+..+++|++|++++|.+. .+| 
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-  589 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-  589 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred             CCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence            9999999999998 887 788775 5555       9999999999998 7888  8999999999999999998 888 


Q ss_pred             hhhhcCCCceEEEeecCcCCCCCCccccCCCC-CcEEEccCccccCcCchhhccCCC--cccEEEccCCCCCCcccccc-
Q 039327          148 EIGDILPSLFSFNISTNALHGSIPSSFGNMNF-LRILDLSSNQLTGEIPERLAVGCV--NLEFLALSNNNLKGHMFCRN-  223 (315)
Q Consensus       148 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~-  223 (315)
                      .+.. +++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+. ..+  +|+.|++++|.+.+..|... 
T Consensus       590 ~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          590 AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchh
Confidence            5554 889999999999999 88888999999 999999999998 7775543 232  37777777777765433211 


Q ss_pred             --c--CCCCCCEEEcCCCcccccccccc-ccCCCCcEEEccCCccc---------------------cccCCCCccccCC
Q 039327          224 --F--NLANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLS---------------------DITMPKNHLEGPI  277 (315)
Q Consensus       224 --~--~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~---------------------~l~l~~~~l~~~~  277 (315)
                        .  ..++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+.                     .+++++|++. .+
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l  743 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL  743 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred             hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence              1  2235555566555555 333322 24555555555544322                     2333444444 44


Q ss_pred             chhhc--ccCCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327          278 PVEFC--QLYSLHILDISDNNISGSLPSCFH-PLYIKKVH  314 (315)
Q Consensus       278 ~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~  314 (315)
                      |..+.  .+++|+.|++++|.+++ +|..+. +++|+.|+
T Consensus       744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~  782 (876)
T 4ecn_A          744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG  782 (876)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred             hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence            44444  55555555555555553 444444 55555544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-33  Score=259.54  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=55.2

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      +++|++|++++|.+.+..+ ..+.++++|++|++++|.++++ |..+.+  ++  +|++|++ ++|.+.+..+..+.+++
T Consensus        55 l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~  128 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSG--LT--SLENLVA-VETKLASLESFPIGQLI  128 (606)
T ss_dssp             CTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSSTT--CT--TCCEEEC-TTSCCCCSSSSCCTTCT
T ss_pred             CccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcCC--cc--cCCEEEc-cCCccccccccccCCCC
Confidence            4455555555555543323 3455555555555555555553 333332  33  5555555 55555443434455555


Q ss_pred             CCCeEEecCceecc-cCChhhhhcccccceeEeecCCCc
Q 039327           81 DLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIG  118 (315)
Q Consensus        81 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~  118 (315)
                      +|++|++++|.+++ .+|..+ +.+++|++|++++|.+.
T Consensus       129 ~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          129 TLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCC
T ss_pred             CCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcce
Confidence            55555555555543 344443 55555555555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=247.32  Aligned_cols=138  Identities=26%  Similarity=0.352  Sum_probs=104.8

Q ss_pred             cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCC--cccccccCCCCCCEEEcCCCcccccccc-ccccCC
Q 039327          175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNFNLANLRQLQLEDNRFIGEIPQ-SLSKCS  251 (315)
Q Consensus       175 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~  251 (315)
                      ..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+.+  ..|..+..+++|++|++++|.+.+.+|. .+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            5667788888888888755665544 57788888888888876  3445677788888888888888764554 366677


Q ss_pred             CCcEEEccCCccc------------cccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCC-cc-ccccceecC
Q 039327          252 SLEGLYLNNNSLS------------DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC-FH-PLYIKKVHL  315 (315)
Q Consensus       252 ~L~~L~l~~n~i~------------~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~-~~~L~~l~l  315 (315)
                      +|++|++++|++.            .+++++|.++ .+|.++..+++|+.|++++|+++ .+|.. +. +++|++|++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence            8888888887653            2667777777 78888889999999999999999 56665 76 899998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-32  Score=238.23  Aligned_cols=282  Identities=21%  Similarity=0.219  Sum_probs=198.5

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      +++++.++++++.+. .+|...+.++++|++|++++|.+++++. .+..  ++  +|++|++ ++|.+.+..|..+.+++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~  117 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AH--TIQKLYM-GFNAIRYLPPHVFQNVP  117 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccC--CC--CcCEEEC-CCCCCCcCCHHHhcCCC
Confidence            578999999999987 6775567899999999999999988665 4443  55  8999999 99999988888899999


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN  160 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  160 (315)
                      +|++|++++|.++ .+|..+++.+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++.  . .+++|+.++
T Consensus       118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~--~-~l~~L~~L~  192 (390)
T 3o6n_A          118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--S-LIPSLFHAN  192 (390)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG--G-GCTTCSEEE
T ss_pred             CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc--c-cccccceee
Confidence            9999999999998 666665688999999999999998877888999999999999999987 4442  2 256777777


Q ss_pred             eecCcCCCCCCccccCCCCCcEEEccCccccCcCchh-------------------hccCCCcccEEEccCCCCCCcccc
Q 039327          161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPER-------------------LAVGCVNLEFLALSNNNLKGHMFC  221 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-------------------~~~~~~~L~~L~l~~n~~~~~~~~  221 (315)
                      +.+|.++.     +...++|++|++++|.+. .++..                   .+..+++|+.|++++|.+.+..+.
T Consensus       193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          193 VSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CCSSCCSE-----EECCSSCSEEECCSSCCC-EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cccccccc-----cCCCCcceEEECCCCeee-eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh
Confidence            77766552     112234444444444443 22221                   112345555555555555544444


Q ss_pred             cccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC
Q 039327          222 RNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL  301 (315)
Q Consensus       222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~  301 (315)
                      .+..+++|++|++++|.+++ ++..+..+++|++|++++|.+.           .+|..+..+++|+.|++++|.+++. 
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~l~~L~~L~L~~N~i~~~-  333 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-----------HVERNQPQFDRLENLYLDHNSIVTL-  333 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-----------CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred             HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-----------ecCccccccCcCCEEECCCCcccee-
Confidence            55555555555555555542 3333344555555555555444           4667788889999999999998844 


Q ss_pred             CCCcc-ccccceecC
Q 039327          302 PSCFH-PLYIKKVHL  315 (315)
Q Consensus       302 ~~~~~-~~~L~~l~l  315 (315)
                      +  +. +++|++|++
T Consensus       334 ~--~~~~~~L~~L~l  346 (390)
T 3o6n_A          334 K--LSTHHTLKNLTL  346 (390)
T ss_dssp             C--CCTTCCCSEEEC
T ss_pred             C--chhhccCCEEEc
Confidence            3  34 778887764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.7e-33  Score=253.73  Aligned_cols=305  Identities=21%  Similarity=0.168  Sum_probs=198.9

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCcc-cccccccc
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGV-TFPKFLYH   78 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~   78 (315)
                      ++++|++|++++|.+.+..| ..+.++++|++|++++|.+++++ ..+.+  .+  +|++|++ ++|.+.+ .+|..+.+
T Consensus        78 ~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~lp~~~~~  151 (606)
T 3vq2_A           78 GLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLASLESFPIGQ--LI--TLKKLNV-AHNFIHSCKLPAYFSN  151 (606)
T ss_dssp             TCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSSSSCCTT--CT--TCCEEEC-CSSCCCCCCCCGGGGT
T ss_pred             chhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCccccccccccCC--CC--CCCEEeC-CCCcccceechHhHhh
Confidence            46889999999999985556 68899999999999999998855 44443  55  8999999 8888875 56888889


Q ss_pred             CCCCCeEEecCceecccCChhhhhccc---------------------------ccceeEeecCCCc-------------
Q 039327           79 QHDLEDVHLSHIKMNGKFPNWLLENNA---------------------------KLETLFLINDSIG-------------  118 (315)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------~L~~L~l~~~~~~-------------  118 (315)
                      +++|++|++++|.+++..+..+ +.++                           +|++|++++|.+.             
T Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  230 (606)
T 3vq2_A          152 LTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG  230 (606)
T ss_dssp             CTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred             cCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccc
Confidence            9999999998887765433221 1111                           2333333333221             


Q ss_pred             --------------------------------------------------------------------------------
Q 039327          119 --------------------------------------------------------------------------------  118 (315)
Q Consensus       119 --------------------------------------------------------------------------------  118 (315)
                                                                                                      
T Consensus       231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~  310 (606)
T 3vq2_A          231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ  310 (606)
T ss_dssp             CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCS
T ss_pred             cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCC
Confidence                                                                                            


Q ss_pred             ---------CcCcC--------------------CCcCCCCccEEEcccCcCCCC--CchhhhhcCCCceEEEeecCcCC
Q 039327          119 ---------GPFRL--------------------PIHPHRRLRFLDVSNNNFQGH--IPVEIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       119 ---------~~~~~--------------------~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~  167 (315)
                               +.+|.                    .+..+++|++|++++|.+++.  ++..+.. +++|++|++++|.++
T Consensus       311 ~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~  389 (606)
T 3vq2_A          311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAI  389 (606)
T ss_dssp             EEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEE
T ss_pred             EEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCccc
Confidence                     11110                    111223333333333333211  1233332 555666666665555


Q ss_pred             CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc-ccccc
Q 039327          168 GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG-EIPQS  246 (315)
Q Consensus       168 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~  246 (315)
                       ..|..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..
T Consensus       390 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  468 (606)
T 3vq2_A          390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV  468 (606)
T ss_dssp             -EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             -cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence             3445566677777777777777644443444467778888888887777677777777888888888888776 35677


Q ss_pred             cccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-cc-cc
Q 039327          247 LSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PL-YI  310 (315)
Q Consensus       247 ~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~-~L  310 (315)
                      +..+++|++|++++|.+..              +++++|.+.+..|.+++.+++|+.|++++|+++ .+|..+. ++ +|
T Consensus       469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L  547 (606)
T 3vq2_A          469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSL  547 (606)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred             hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence            7778888888888776544              566777777777777777788888888888877 5666565 54 47


Q ss_pred             ceecC
Q 039327          311 KKVHL  315 (315)
Q Consensus       311 ~~l~l  315 (315)
                      ++|++
T Consensus       548 ~~l~l  552 (606)
T 3vq2_A          548 AFFNL  552 (606)
T ss_dssp             CEEEC
T ss_pred             cEEEc
Confidence            77664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.5e-33  Score=251.72  Aligned_cols=133  Identities=17%  Similarity=0.075  Sum_probs=73.5

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +.|++|++++|.+.+..+ ..+.++++|++|++++|.+++++ ..+.+  ++  +|++|++ ++|.+.+..+..+.++++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYS--LG--SLEHLDL-SDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTT--CT--TCCEEEC-TTSCCCSCCHHHHTTCTT
T ss_pred             CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccc--cc--cCCEEEC-CCCccCccCHHHhccCCC
Confidence            356777777776664333 45666777777777777666644 33332  34  6666666 666666555555666666


Q ss_pred             CCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCC
Q 039327           82 LEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus        82 L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~  142 (315)
                      |++|++++|.+++ ..|.. ++.+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.
T Consensus       100 L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            6666666666653 22332 2555555555555554222222 34444444444444444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.5e-32  Score=230.59  Aligned_cols=285  Identities=20%  Similarity=0.249  Sum_probs=213.4

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +++|++|+++++.+. .++  .+..+++|++|++++|.+++++. +..  ++  +|++|++ ++|.+.+ + ..+..+++
T Consensus        43 l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~--l~--~L~~L~L-~~n~i~~-~-~~~~~l~~  111 (347)
T 4fmz_A           43 LESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITDISP-LSN--LV--KLTNLYI-GTNKITD-I-SALQNLTN  111 (347)
T ss_dssp             HTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCC-C-GGGTTCTT
T ss_pred             cccccEEEEeCCccc-cch--hhhhcCCccEEEccCCccccchh-hhc--CC--cCCEEEc-cCCcccC-c-hHHcCCCc
Confidence            567899999999886 454  57888999999999998888665 443  55  8999999 8888775 3 35888899


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      |++|++++|.+++ ++.  +..+++|++|++++|...... ..+..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus       112 L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~-~~-~l~~L~~L~l  184 (347)
T 4fmz_A          112 LRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK-DVTP-IA-NLTDLYSLSL  184 (347)
T ss_dssp             CSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCSEEEC
T ss_pred             CCEEECcCCcccC-chh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC-Cchh-hc-cCCCCCEEEc
Confidence            9999999988874 333  478888888888888655433 33778888888888888776 4444 33 3778888888


Q ss_pred             ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      .+|.+.. .+. +..+++|+.+++++|.+. ..+.  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++
T Consensus       185 ~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          185 NYNQIED-ISP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             TTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cCCcccc-ccc-ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence            8887773 333 677778888888888776 3333  3347778888888887776544  6677778888888877764


Q ss_pred             ccccccccCCCCcEEEccCCcccc------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-cc
Q 039327          242 EIPQSLSKCSSLEGLYLNNNSLSD------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PL  308 (315)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~n~i~~------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~  308 (315)
                      .  ..+..+++|++|++++|.+..            +++++|.+.+..+..++.+++|+.|++++|.+++..|  +. ++
T Consensus       258 ~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~  333 (347)
T 4fmz_A          258 I--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS  333 (347)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred             C--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence            3  456677778888887776554            6677777777778889999999999999999986555  55 99


Q ss_pred             ccceecC
Q 039327          309 YIKKVHL  315 (315)
Q Consensus       309 ~L~~l~l  315 (315)
                      +|++|++
T Consensus       334 ~L~~L~l  340 (347)
T 4fmz_A          334 KMDSADF  340 (347)
T ss_dssp             TCSEESS
T ss_pred             ccceeeh
Confidence            9999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.9e-32  Score=245.48  Aligned_cols=297  Identities=19%  Similarity=0.177  Sum_probs=179.8

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      ++|++|++++|.+.+ ++...+.++++|++|++++|.++++ |..+.+  ++  +|++|++ ++|.++ .+|..  .+++
T Consensus        52 ~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~--~L~~L~L-s~N~l~-~lp~~--~l~~  122 (562)
T 3a79_B           52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLF--NQ--DLEYLDV-SHNRLQ-NISCC--PMAS  122 (562)
T ss_dssp             TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTT--CT--TCCEEEC-TTSCCC-EECSC--CCTT
T ss_pred             CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCC--CC--CCCEEEC-CCCcCC-ccCcc--cccc
Confidence            456777777777763 3334667777777777777777664 333333  34  6777777 666666 34544  5666


Q ss_pred             CCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCc--cEEEcccCcC--CCCCchhhhh-----
Q 039327           82 LEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL--RFLDVSNNNF--QGHIPVEIGD-----  151 (315)
Q Consensus        82 L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~-----  151 (315)
                      |++|++++|.+++ ..|.. ++.+++|++|++++|.+.+.   .+..+++|  ++|++++|.+  ++..|..+..     
T Consensus       123 L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~  198 (562)
T 3a79_B          123 LRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV  198 (562)
T ss_dssp             CSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred             CCEEECCCCCccccCchHh-hcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence            7777777776654 23344 36666666666666665431   22223333  5555544444  2111111110     


Q ss_pred             ---------------------------------------------------------------------------cCCCc
Q 039327          152 ---------------------------------------------------------------------------ILPSL  156 (315)
Q Consensus       152 ---------------------------------------------------------------------------~~~~L  156 (315)
                                                                                                 ..++|
T Consensus       199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L  278 (562)
T 3a79_B          199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV  278 (562)
T ss_dssp             EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred             EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence                                                                                       00144


Q ss_pred             eEEEeecCcCCCCCCccc-----------------------------------------------------cCCCCCcEE
Q 039327          157 FSFNISTNALHGSIPSSF-----------------------------------------------------GNMNFLRIL  183 (315)
Q Consensus       157 ~~L~l~~n~~~~~~~~~l-----------------------------------------------------~~~~~L~~L  183 (315)
                      ++|++++|.+++.+|..+                                                     ..+++|++|
T Consensus       279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L  358 (562)
T 3a79_B          279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL  358 (562)
T ss_dssp             EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred             cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence            444444444443333322                                                     456677777


Q ss_pred             EccCccccCcCchhhccCCCcccEEEccCCCCCCcc--cccccCCCCCCEEEcCCCccccccc-cccccCCCCcEEEccC
Q 039327          184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM--FCRNFNLANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNN  260 (315)
Q Consensus       184 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~  260 (315)
                      ++++|.+.+..|..+. .+++|+.|++++|.+.+..  +..+..+++|++|++++|.+++.+| ..+..+++|++|++++
T Consensus       359 ~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             ECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             ECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence            7777777654554443 5777777777777776532  3456677777777777777765344 3455667777777777


Q ss_pred             Cccc------------cccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCC-cc-ccccceecC
Q 039327          261 NSLS------------DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC-FH-PLYIKKVHL  315 (315)
Q Consensus       261 n~i~------------~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~-~~~L~~l~l  315 (315)
                      |++.            .+++++|.++ .+|..+..+++|+.|++++|+++ .+|.. +. +++|+.|++
T Consensus       438 n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          438 NMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             SCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred             CCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence            6552            2566666666 67777779999999999999999 56665 66 899998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-32  Score=257.11  Aligned_cols=296  Identities=20%  Similarity=0.170  Sum_probs=224.6

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccc-c-ccccccCCCCccccEEEEeccCCCCccccccccccC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-E-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ   79 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~   79 (315)
                      .+++++|++++|.+.+..+ ..+.++++|++|++++|.... + |..+.+  ++  +|++|++ ++|.+.+..|..+.++
T Consensus        23 p~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~--L~--~L~~L~L-s~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRN--LP--NLRILDL-GSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             CTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSS--CT--TCCEEEC-TTCCCCEECTTSSCSC
T ss_pred             CCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcC--CC--CCCEEEC-CCCcCcccCHhHccCC
Confidence            4689999999999985555 689999999999999995543 5 555554  55  9999999 9999998889999999


Q ss_pred             CCCCeEEecCceecccCChh-hhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcC--CC
Q 039327           80 HDLEDVHLSHIKMNGKFPNW-LLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL--PS  155 (315)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~  155 (315)
                      ++|++|++++|.+++.++.. .++.+++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+.. +  ++
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~  175 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKT  175 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCS
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCc
Confidence            99999999999998766553 34889999999999999987544 57899999999999999998666666654 4  78


Q ss_pred             ceEEEeecCcCCCCCCccccCCCC------CcEEEccCccccCcCchhhcc-----------------------------
Q 039327          156 LFSFNISTNALHGSIPSSFGNMNF------LRILDLSSNQLTGEIPERLAV-----------------------------  200 (315)
Q Consensus       156 L~~L~l~~n~~~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~~~~-----------------------------  200 (315)
                      |+.|++.+|.+.+..|..+..+++      |+.|++++|.+.+..+..+..                             
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            999999999888777766666655      899999888765444332211                             


Q ss_pred             ------C--CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCc
Q 039327          201 ------G--CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNH  272 (315)
Q Consensus       201 ------~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~  272 (315)
                            .  .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..       
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-------  328 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-------  328 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-------
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-------
Confidence                  1  2578888888888887777888888889999998888887777888888888888888887654       


Q ss_pred             cccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327          273 LEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVH  314 (315)
Q Consensus       273 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~  314 (315)
                         ..+.+|..+++|+.|++++|.+.+..+..+. +++|++|+
T Consensus       329 ---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  368 (844)
T 3j0a_A          329 ---LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD  368 (844)
T ss_dssp             ---CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred             ---cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence               1233444444455555555544433333344 44444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.3e-32  Score=230.46  Aligned_cols=243  Identities=26%  Similarity=0.397  Sum_probs=151.3

Q ss_pred             ccEEEEeccCCCCcc--ccccccccCCCCCeEEecC-ceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCcc
Q 039327           56 QLQSLLLSSGYGDGV--TFPKFLYHQHDLEDVHLSH-IKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLR  132 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  132 (315)
                      +++.|++ +++.+.+  .+|..+.++++|++|++++ |.+.+.+|..+ +.+++|++|++++|.+.+..|..+..+++|+
T Consensus        51 ~l~~L~L-~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           51 RVNNLDL-SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEE-ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             eEEEEEC-CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            5666666 6666665  5666666666666666663 66666666553 6666666666666666655666666666666


Q ss_pred             EEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCC-CCcEEEccCccccCcCchhhccCCCcccEEEcc
Q 039327          133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN-FLRILDLSSNQLTGEIPERLAVGCVNLEFLALS  211 (315)
Q Consensus       133 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  211 (315)
                      +|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+..++ +|++|++++|.+.+.+|..+. .+. |+.|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECc
Confidence            6666666666555555554 66666666666666655666666665 666666666666655555544 233 6666666


Q ss_pred             CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEe
Q 039327          212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILD  291 (315)
Q Consensus       212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~  291 (315)
                      +|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+..          .+|.++..+++|+.|+
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~----------~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG----------TLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE----------CCCGGGGGCTTCCEEE
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC----------cCChHHhcCcCCCEEE
Confidence            6666655566666666666666666666544333 5556666666666665542          4566666666666666


Q ss_pred             cccCccCCCCCCCccccccceec
Q 039327          292 ISDNNISGSLPSCFHPLYIKKVH  314 (315)
Q Consensus       292 l~~n~~~~~~~~~~~~~~L~~l~  314 (315)
                      +++|++++.+|..-.+++|+.++
T Consensus       275 Ls~N~l~~~ip~~~~l~~L~~l~  297 (313)
T 1ogq_A          275 VSFNNLCGEIPQGGNLQRFDVSA  297 (313)
T ss_dssp             CCSSEEEEECCCSTTGGGSCGGG
T ss_pred             CcCCcccccCCCCccccccChHH
Confidence            66666666666653356665554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=248.61  Aligned_cols=140  Identities=26%  Similarity=0.306  Sum_probs=97.8

Q ss_pred             ccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCccccccccccccCCC
Q 039327          174 FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSS  252 (315)
Q Consensus       174 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  252 (315)
                      +..+++|++|++++|.+. .++.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus       369 ~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             HHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             ccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence            344455555555555544 33333 3346666666666666655433 45667777888888888777667777777888


Q ss_pred             CcEEEccCCcccc---------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          253 LEGLYLNNNSLSD---------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       253 L~~L~l~~n~i~~---------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      |++|++++|.+.+               +++++|.+.+..|.+++.+++|+.|++++|.+++..+..+. +++|+.|++
T Consensus       447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  525 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL  525 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence            8888888776641               66777778777788888899999999999999877777777 888888875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1e-32  Score=232.70  Aligned_cols=251  Identities=25%  Similarity=0.331  Sum_probs=197.0

Q ss_pred             cccceeecccccccc---cccccccCCCCccccEEEEecc-CCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327           28 SRLKRLWAYNNEIKA---EITESHSLTAPNFQLQSLLLSS-GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN  103 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  103 (315)
                      .++++|+++++.+.+   +|..+.+  ++  +|++|++ + ++.+.+.+|..+.++++|++|++++|.+++.+|..+ ..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~--l~--~L~~L~L-~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~  123 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLAN--LP--YLNFLYI-GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGG--CT--TCSEEEE-EEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GG
T ss_pred             ceEEEEECCCCCccCCcccChhHhC--CC--CCCeeeC-CCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hC
Confidence            568888888888774   6666665  55  7888888 6 477777788888888888888888888877777764 78


Q ss_pred             ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCC-CceEEEeecCcCCCCCCccccCCCCCcE
Q 039327          104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP-SLFSFNISTNALHGSIPSSFGNMNFLRI  182 (315)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~  182 (315)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+.. ++ +|++|++++|.+++..|..+..++ |++
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~  201 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAF  201 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence            888888888888887777778888888888888888887777777776 54 888888888888777777777776 888


Q ss_pred             EEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc
Q 039327          183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS  262 (315)
Q Consensus       183 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (315)
                      |++++|.+.+..+..+ ..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|.++..+++|++|++++|.
T Consensus       202 L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EECCSSEEEECCGGGC-CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EECcCCcccCcCCHHH-hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            8888888875554443 4688888888888888765554 6678889999999999888888888888899999988887


Q ss_pred             cccccCCCCccccCCchhhcccCCCCEEecccCc-cCC
Q 039327          263 LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN-ISG  299 (315)
Q Consensus       263 i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-~~~  299 (315)
                      +..          .+|.. ..+++|+.+++++|+ +.+
T Consensus       280 l~~----------~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          280 LCG----------EIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEE----------ECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ccc----------cCCCC-ccccccChHHhcCCCCccC
Confidence            663          45654 778889999999887 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-31  Score=249.46  Aligned_cols=305  Identities=21%  Similarity=0.174  Sum_probs=175.8

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      +++|++|++++|.+.+..+ ..+.++++|++|++++|.++.+|.. +.+  .+  +|++|++ ++|.+.+..+..+.+++
T Consensus        48 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~  121 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAF--CT--NLTELHL-MSNSIQKIKNNPFVKQK  121 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTT--CT--TCSEEEC-CSSCCCCCCSCTTTTCT
T ss_pred             CCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhcc--CC--CCCEEEC-CCCccCccChhHccccC
Confidence            4566666666666654333 4556666666666666666665543 222  33  5666666 55555544445555666


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCc--CCCCccEEEcccCcCC----------------
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIH--PHRRLRFLDVSNNNFQ----------------  142 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~----------------  142 (315)
                      +|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+..+.  .+++|++|++++|.+.                
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  200 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL  200 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred             CCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence            66666666665554444332 4555555555555555443332221  2344444444444443                


Q ss_pred             -----------------------------------CCCchhhhhcC--CCceEEEeecCcCCCCCCccccCCCCCcEEEc
Q 039327          143 -----------------------------------GHIPVEIGDIL--PSLFSFNISTNALHGSIPSSFGNMNFLRILDL  185 (315)
Q Consensus       143 -----------------------------------~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  185 (315)
                                                         +..|..+.. +  ++|++|++++|.+++..|..+..+++|++|++
T Consensus       201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (680)
T 1ziw_A          201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL  279 (680)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence                                               222222221 2  23666666666666555555666666666666


Q ss_pred             cCccccCcCchhhccCCCcccEEEccCCCCCC-----ccc----ccccCCCCCCEEEcCCCccccccccccccCCCCcEE
Q 039327          186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKG-----HMF----CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGL  256 (315)
Q Consensus       186 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  256 (315)
                      ++|.+.+..+..+ ..+++|+.|++++|...+     ..|    ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus       280 ~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  358 (680)
T 1ziw_A          280 EYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL  358 (680)
T ss_dssp             CSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred             CCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence            6666653333332 346666666666543321     111    145567788888888888887767777888888888


Q ss_pred             EccCCc------------------cccccCCCCccccCCchhhcccCCCCEEecccCccCCCCC-CCcc-ccccceecC
Q 039327          257 YLNNNS------------------LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP-SCFH-PLYIKKVHL  315 (315)
Q Consensus       257 ~l~~n~------------------i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~-~~~L~~l~l  315 (315)
                      ++++|.                  +..+++++|.+.+..|.++..+++|+.|++++|.+++.+| ..+. +++|++|++
T Consensus       359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            887763                  3345667777777777777777778888888777765555 3444 666666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.4e-31  Score=243.32  Aligned_cols=288  Identities=23%  Similarity=0.258  Sum_probs=195.9

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      +++++.+++++|.+. .+|...+.++++|++|++++|.+++++. .+..  ++  +|++|++ ++|.+.+..|..+.+++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~  123 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AH--TIQKLYM-GFNAIRYLPPHVFQNVP  123 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CC--CCCEEEC-CCCcCCCCCHHHHcCCC
Confidence            467899999999887 5665667889999999999999988654 4443  55  8999999 88999987788889999


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN  160 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  160 (315)
                      +|++|++++|.++ .+|..+++.+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++.  . .+++|+.|+
T Consensus       124 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~--~-~l~~L~~L~  198 (597)
T 3oja_B          124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--S-LIPSLFHAN  198 (597)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG--G-GCTTCSEEE
T ss_pred             CCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh--h-hhhhhhhhh
Confidence            9999999999998 566655689999999999999998888888999999999999999887 4442  2 266777777


Q ss_pred             eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +.+|.+++     +...++|+.|++++|.+. .++...   .++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          199 VSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             CCSSCCSE-----EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             cccCcccc-----ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccC
Confidence            77776552     122334555555555444 222221   23444444444444431  23334444444444444444


Q ss_pred             cccccccccCCCCcEEEccCCcccc-------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-
Q 039327          241 GEIPQSLSKCSSLEGLYLNNNSLSD-------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-  306 (315)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~n~i~~-------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-  306 (315)
                      +..|..+..+++|+.|++++|.+..             +++++|.+. .+|..+..+++|+.|++++|.+++..   +. 
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~  343 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LST  343 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhh
Confidence            4444444444444444444443322             333344444 57777888899999999999987443   33 


Q ss_pred             ccccceecC
Q 039327          307 PLYIKKVHL  315 (315)
Q Consensus       307 ~~~L~~l~l  315 (315)
                      +++|++|++
T Consensus       344 ~~~L~~L~l  352 (597)
T 3oja_B          344 HHTLKNLTL  352 (597)
T ss_dssp             TCCCSEEEC
T ss_pred             cCCCCEEEe
Confidence            777877764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=241.21  Aligned_cols=295  Identities=21%  Similarity=0.209  Sum_probs=187.2

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      ++|++|++++|.+.+..+ ..+.++++|++|++++|.++++ |..+.+  ++  +|++|++ ++|.++ .+|..  .+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-s~N~l~-~lp~~--~l~~   91 (520)
T 2z7x_B           21 QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKF--NQ--ELEYLDL-SHNKLV-KISCH--PTVN   91 (520)
T ss_dssp             TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTT--CT--TCCEEEC-CSSCCC-EEECC--CCCC
T ss_pred             ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcChHHhhc--cc--CCCEEec-CCCcee-ecCcc--ccCC
Confidence            356666666666653322 4566666666666666666663 344433  44  6666666 666665 34443  5666


Q ss_pred             CCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCc--cEEEcccCcC--CCCCchhhhh-----
Q 039327           82 LEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL--RFLDVSNNNF--QGHIPVEIGD-----  151 (315)
Q Consensus        82 L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~-----  151 (315)
                      |++|++++|.+++ .+|..+ +.+++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .+..|..+..     
T Consensus        92 L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~  167 (520)
T 2z7x_B           92 LKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES  167 (520)
T ss_dssp             CSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred             ccEEeccCCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccce
Confidence            6666666666654 344443 566666666666666543   223444444  5555555544  2222222211     


Q ss_pred             -----------------------------------------------------------------------------cCC
Q 039327          152 -----------------------------------------------------------------------------ILP  154 (315)
Q Consensus       152 -----------------------------------------------------------------------------~~~  154 (315)
                                                                                                   ..+
T Consensus       168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  247 (520)
T 2z7x_B          168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT  247 (520)
T ss_dssp             EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred             EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence                                                                                         012


Q ss_pred             CceEEEeecCcCCCCCCccc-----cCCCCCcEEEccCccccCcCch-------------------------hhccCCCc
Q 039327          155 SLFSFNISTNALHGSIPSSF-----GNMNFLRILDLSSNQLTGEIPE-------------------------RLAVGCVN  204 (315)
Q Consensus       155 ~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~~-------------------------~~~~~~~~  204 (315)
                      +|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+|.                         .....+++
T Consensus       248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~  325 (520)
T 2z7x_B          248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP  325 (520)
T ss_dssp             SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred             cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence            55566666666555555555     4555554444444443  1220                         00135788


Q ss_pred             ccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc--ccccccccCCCCcEEEccCCcccc---------------cc
Q 039327          205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG--EIPQSLSKCSSLEGLYLNNNSLSD---------------IT  267 (315)
Q Consensus       205 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~i~~---------------l~  267 (315)
                      |+.|++++|.+.+..+..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+..               ++
T Consensus       326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~  405 (520)
T 2z7x_B          326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN  405 (520)
T ss_dssp             CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred             ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence            9999999999988778888899999999999999886  456778889999999999987764               55


Q ss_pred             CCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      +++|.+.+.+|..+.  ++|+.|++++|+++ .+|..+. +++|++|++
T Consensus       406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L  451 (520)
T 2z7x_B          406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV  451 (520)
T ss_dssp             CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred             CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence            677777766665553  68999999999998 7777666 889988875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.98  E-value=4.1e-31  Score=245.74  Aligned_cols=285  Identities=24%  Similarity=0.193  Sum_probs=218.1

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +++++|++++|.+.+ ++...+.++++|++|++++|.++++ |..+.+  ++  +|++|++ ++|.+....+..+.++++
T Consensus        25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQK--LP--MLKVLNL-QHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH--CT--TCCEEEC-CSSCCCCCCTTTTTTCTT
T ss_pred             CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhc--cc--CcCEEEC-CCCccCccChhhhccCCC
Confidence            478999999999984 5546799999999999999999885 444444  55  8999999 888888655557999999


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhh-cCCCceEEE
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGD-ILPSLFSFN  160 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~  160 (315)
                      |++|++++|.+++..+.. ++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. .+++|++|+
T Consensus        99 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A           99 LTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             CSEEECCSSCCCCCCSCT-TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             CCEEECCCCccCccChhH-ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence            999999999998555555 489999999999999998888888999999999999999988433333321 257899999


Q ss_pred             eecCcCCCCCCccccCC---------------------------CCCcEEEccCccccCcCchhhccCCC--cccEEEcc
Q 039327          161 ISTNALHGSIPSSFGNM---------------------------NFLRILDLSSNQLTGEIPERLAVGCV--NLEFLALS  211 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~  211 (315)
                      +++|.+++..|..+..+                           ++|+.|++++|.+.+..+..+. .++  +|+.|+++
T Consensus       178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls  256 (680)
T 1ziw_A          178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLS  256 (680)
T ss_dssp             CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECT
T ss_pred             CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECC
Confidence            99998886666655544                           4566777777776644443332 343  48999999


Q ss_pred             CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-----------------------cccccC
Q 039327          212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-----------------------LSDITM  268 (315)
Q Consensus       212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-----------------------i~~l~l  268 (315)
                      +|.+.+..+..+..+++|++|++++|.+.+..+.++..+++|+.|++++|.                       +..+++
T Consensus       257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l  336 (680)
T 1ziw_A          257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM  336 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence            998888777788888899999999998887777788888888888886542                       233566


Q ss_pred             CCCccccCCchhhcccCCCCEEecccC
Q 039327          269 PKNHLEGPIPVEFCQLYSLHILDISDN  295 (315)
Q Consensus       269 ~~~~l~~~~~~~l~~~~~L~~L~l~~n  295 (315)
                      ++|.+.+..+.+|..+++|+.|++++|
T Consensus       337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          337 EDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             CSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             CCCccCCCChhHhccccCCcEEECCCC
Confidence            667777666666666666666665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.98  E-value=9.6e-32  Score=245.06  Aligned_cols=132  Identities=20%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      .+++|++++|.+.+..+ ..+.++++|++|++++|.+++++.. +.+  ++  +|++|++ ++|.+.+..+..+.++++|
T Consensus        29 ~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQS--LS--HLSTLIL-TGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTT--CT--TCCEEEC-TTCCCCEECTTTTTTCTTC
T ss_pred             cccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccC--ch--hCCEEeC-cCCcCCccCHhhhcCcccc
Confidence            46667777776663333 4566677777777777766664432 222  33  6677777 6666665555666666666


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCC
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~  142 (315)
                      ++|++++|.++...+.. ++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.++
T Consensus       103 ~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          103 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             ccccccccccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            66666666665322222 3566666666666666554 24555666666666666665544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.98  E-value=1.9e-31  Score=252.98  Aligned_cols=281  Identities=20%  Similarity=0.186  Sum_probs=176.6

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccc--cc
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKF--LY   77 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~   77 (315)
                      ++++|++|++++|...+.++...+.++++|++|+|++|.++.+ |..+.+  ++  +|++|++ +.|.+.+..+..  +.
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG--LF--HLFELRL-YFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS--CS--SCCCEEC-TTCCCSSCCSTTCCCS
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC--Cc--ccCEeeC-cCCCCCcccccCcccc
Confidence            4678999999999766666546889999999999999998885 556554  55  8999999 888888765554  78


Q ss_pred             cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCC--CCccEEEcccCcCCCCCchhhhhcCC-
Q 039327           78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPH--RRLRFLDVSNNNFQGHIPVEIGDILP-  154 (315)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~-  154 (315)
                      ++++|++|++++|.+++..+...++.+++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..|..+.. ++ 
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~  199 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMN  199 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSC
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCC
Confidence            889999999999988766554335888999999999888876666555554  55666666666655444433222 21 


Q ss_pred             -----CceEEEeecCcCCCCCCcccc------------------------------------C--CCCCcEEEccCcccc
Q 039327          155 -----SLFSFNISTNALHGSIPSSFG------------------------------------N--MNFLRILDLSSNQLT  191 (315)
Q Consensus       155 -----~L~~L~l~~n~~~~~~~~~l~------------------------------------~--~~~L~~L~l~~n~~~  191 (315)
                           .|+.|++++|.+++..+..+.                                    .  .++|+.|++++|.+.
T Consensus       200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~  279 (844)
T 3j0a_A          200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF  279 (844)
T ss_dssp             TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred             ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence                 255555555544322222111                                    1  145666666666555


Q ss_pred             CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCC
Q 039327          192 GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKN  271 (315)
Q Consensus       192 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~  271 (315)
                       .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+.    
T Consensus       280 -~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~----  354 (844)
T 3j0a_A          280 -SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ----  354 (844)
T ss_dssp             -EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC----
T ss_pred             -ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC----
Confidence             233333334566666666666665555555556666666666666665555555566666666666665554311    


Q ss_pred             ccccCCchhhcccCCCCEEecccCccC
Q 039327          272 HLEGPIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       272 ~l~~~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                            +..|..+++|+.|++++|.++
T Consensus       355 ------~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          355 ------DQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             ------SSCSCSCCCCCEEEEETCCSC
T ss_pred             ------hhhhcCCCCCCEEECCCCCCC
Confidence                  233444555555555555444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=1.1e-30  Score=237.68  Aligned_cols=293  Identities=20%  Similarity=0.213  Sum_probs=229.9

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      ...++++++++.++ .+|. .+.  ++|++|++++|.+++++ ..+.+  ++  +|++|++ ++|.+++..|..+.++++
T Consensus        31 ~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~--l~--~L~~L~L-s~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           31 ELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISF--LS--ELRVLRL-SHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             --CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTT--CT--TCCEEEC-CSCCCCEECTTTTTTCTT
T ss_pred             CCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhcc--CC--CccEEEC-CCCCCCcCCHHHhCCCCC
Confidence            34578999999998 5774 333  79999999999999966 45554  66  9999999 999999888899999999


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCc--eE
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSL--FS  158 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~  158 (315)
                      |++|++++|.++ .+|..   .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.   .+.. ++++  ++
T Consensus       102 L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~-l~~L~L~~  173 (562)
T 3a79_B          102 LEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP-VAHLHLSC  173 (562)
T ss_dssp             CCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG-GTTSCEEE
T ss_pred             CCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh-hhhceeeE
Confidence            999999999998 67764   79999999999999986 3457899999999999999998742   2222 4455  99


Q ss_pred             EEeecCcC--CCCCCccccCCC----------------------------------------------------------
Q 039327          159 FNISTNAL--HGSIPSSFGNMN----------------------------------------------------------  178 (315)
Q Consensus       159 L~l~~n~~--~~~~~~~l~~~~----------------------------------------------------------  178 (315)
                      |++.+|.+  ++..|..+..+.                                                          
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            99999988  555555444322                                                          


Q ss_pred             -----------------------CCcEEEccCccccCcCchhhc------------------------------------
Q 039327          179 -----------------------FLRILDLSSNQLTGEIPERLA------------------------------------  199 (315)
Q Consensus       179 -----------------------~L~~L~l~~n~~~~~~~~~~~------------------------------------  199 (315)
                                             +|++|++++|.+.+.+|...+                                    
T Consensus       254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L  333 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI  333 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred             EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence                                   677777777777666665431                                    


Q ss_pred             ----------------cCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc--ccccccccCCCCcEEEccCC
Q 039327          200 ----------------VGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG--EIPQSLSKCSSLEGLYLNNN  261 (315)
Q Consensus       200 ----------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n  261 (315)
                                      ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++  ..|..+..+++|++|++++|
T Consensus       334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN  413 (562)
T ss_dssp             SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred             eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence                            356788899999998888778888889999999999999885  33566788899999999988


Q ss_pred             cccc---------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          262 SLSD---------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       262 ~i~~---------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      .+..               +++++|.+.+.++..+.  ++|+.|++++|+++ .+|..+. +++|++|++
T Consensus       414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L  480 (562)
T 3a79_B          414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV  480 (562)
T ss_dssp             CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred             cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence            7764               55677777766655443  68999999999998 6776655 888988875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=1.7e-30  Score=220.91  Aligned_cols=283  Identities=20%  Similarity=0.241  Sum_probs=204.0

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      +++.++++++.+. .+|. .+  .+.+++|++++|.+++++. .+.+  ++  +|++|++ ++|.+.+..|..+..+++|
T Consensus        32 ~l~~l~~~~~~l~-~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPK-DL--PPDTALLDLQNNKITEIKDGDFKN--LK--NLHTLIL-INNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSCCC-SCCC-SC--CTTCCEEECCSSCCCCBCTTTTTT--CT--TCCEEEC-CSSCCCCBCTTTTTTCTTC
T ss_pred             CCeEEEecCCCcc-ccCc-cC--CCCCeEEECCCCcCCEeChhhhcc--CC--CCCEEEC-CCCcCCeeCHHHhcCCCCC
Confidence            5778888887776 5552 22  2578888888888887655 3333  45  7888888 7888887777788888888


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC--CCchhhhhcCCCceEEE
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG--HIPVEIGDILPSLFSFN  160 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~  160 (315)
                      ++|++++|.++ .+|..+   .++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+. .+++|++|+
T Consensus       103 ~~L~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~  177 (330)
T 1xku_A          103 ERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIR  177 (330)
T ss_dssp             CEEECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEE
T ss_pred             CEEECCCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEE
Confidence            88888888877 556543   3688888888888876666667788888888888887752  2333343 378888888


Q ss_pred             eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +.+|.++ .+|..+.  ++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       178 l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          178 IADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             CCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             CCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            8888877 4554443  77888888888887333333 446788888888888887776667778888888888888887


Q ss_pred             cccccccccCCCCcEEEccCCccccccCCCCccccCCchhhc------ccCCCCEEecccCccCC--CCCCCcc-ccccc
Q 039327          241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFC------QLYSLHILDISDNNISG--SLPSCFH-PLYIK  311 (315)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~------~~~~L~~L~l~~n~~~~--~~~~~~~-~~~L~  311 (315)
                       .+|..+..+++|++|++++|.++.+.          +..|+      ..+.++.+++++|.+..  ..|..+. +..++
T Consensus       254 -~lp~~l~~l~~L~~L~l~~N~i~~~~----------~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~  322 (330)
T 1xku_A          254 -KVPGGLADHKYIQVVYLHNNNISAIG----------SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  322 (330)
T ss_dssp             -SCCTTTTTCSSCCEEECCSSCCCCCC----------TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             -cCChhhccCCCcCEEECCCCcCCccC----------hhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence             66777788888888888888877543          22232      24678888999888753  4455666 77777


Q ss_pred             eecC
Q 039327          312 KVHL  315 (315)
Q Consensus       312 ~l~l  315 (315)
                      .+++
T Consensus       323 ~l~L  326 (330)
T 1xku_A          323 AVQL  326 (330)
T ss_dssp             GEEC
T ss_pred             EEEe
Confidence            7764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=9.2e-30  Score=226.30  Aligned_cols=284  Identities=25%  Similarity=0.312  Sum_probs=173.0

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +++|++|++++|.+. .++  .+.++++|++|++++|.+..++. +.+  ++  +|++|++ ++|.+.+..+  +.++++
T Consensus        67 l~~L~~L~Ls~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~--l~--~L~~L~L-~~n~l~~~~~--~~~l~~  135 (466)
T 1o6v_A           67 LNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIADITP-LAN--LT--NLTGLTL-FNNQITDIDP--LKNLTN  135 (466)
T ss_dssp             CTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCCCGG--GTTCTT
T ss_pred             hcCCCEEECCCCccC-Cch--hhhccccCCEEECCCCccccChh-hcC--CC--CCCEEEC-CCCCCCCChH--HcCCCC
Confidence            566777777777776 333  26677777777777777766554 433  44  7777777 7777664322  677777


Q ss_pred             CCeEEecCceecccCChh-------------------hhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCC
Q 039327           82 LEDVHLSHIKMNGKFPNW-------------------LLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  142 (315)
                      |++|++++|.+.+ ++..                   -+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.
T Consensus       136 L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  212 (466)
T 1o6v_A          136 LNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS  212 (466)
T ss_dssp             CSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccc
Confidence            7777777777653 2210                   023445555555555555432  23555566666666666555


Q ss_pred             CCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327          143 GHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR  222 (315)
Q Consensus       143 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  222 (315)
                      + ++. +. .+++|++|++++|.++. . ..+..+++|+.|++++|.+.+ .+.  +..+++|+.|++++|.+.+..+  
T Consensus       213 ~-~~~-~~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--  282 (466)
T 1o6v_A          213 D-ITP-LG-ILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISP--  282 (466)
T ss_dssp             C-CGG-GG-GCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--
T ss_pred             c-ccc-cc-ccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc--
Confidence            2 222 22 25566666666666552 2 245566666777776666653 222  2346667777777776665433  


Q ss_pred             ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc------------ccCCCCccccCCchhhcccCCCCEE
Q 039327          223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD------------ITMPKNHLEGPIPVEFCQLYSLHIL  290 (315)
Q Consensus       223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~------------l~l~~~~l~~~~~~~l~~~~~L~~L  290 (315)
                      +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+..            +++++|.+.+.  ..+..+++|+.|
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  358 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL  358 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence            5566777777777777664322  5666777777777765543            55666666643  357777888888


Q ss_pred             ecccCccCCCCCCCcc-ccccceecC
Q 039327          291 DISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       291 ~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      ++++|++++..|  +. +++|+.|++
T Consensus       359 ~l~~n~l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          359 SAGHNQISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             ECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred             eCCCCccCccch--hhcCCCCCEEec
Confidence            888888876655  44 777777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.2e-30  Score=222.01  Aligned_cols=282  Identities=18%  Similarity=0.234  Sum_probs=207.9

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      +++.++++++.+. .+|. .+  .++|++|++++|.++.++. .+.+  ++  +|++|++ ++|.+.+..|..+.++++|
T Consensus        34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKG--LQ--HLYALVL-VNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhC--CC--CCcEEEC-CCCccCccCHhHhhCcCCC
Confidence            5788888888776 5663 23  3678888888888877543 4443  55  7888888 8888887777788888888


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC--CCchhhhhcCCCceEEE
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG--HIPVEIGDILPSLFSFN  160 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~  160 (315)
                      ++|++++|.++ .+|..+   .++|++|++++|.+....+..+..+++|++|++++|.++.  ..+..+.. + +|++|+
T Consensus       105 ~~L~L~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~  178 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLR  178 (332)
T ss_dssp             CEEECCSSCCC-SCCSSC---CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCB
T ss_pred             CEEECCCCcCC-ccCccc---cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEE
Confidence            88888888877 566543   2788888888888876555667888888888888887752  23333332 4 788888


Q ss_pred             eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +++|.++ .+|..+.  ++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus       179 l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          179 ISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             CCSSBCS-SCCSSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CcCCCCC-ccCcccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence            8888887 4555443  67888888888887 444333446888888888888888877777888888899999888887


Q ss_pred             cccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcc------cCCCCEEecccCccC--CCCCCCcc-ccccc
Q 039327          241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQ------LYSLHILDISDNNIS--GSLPSCFH-PLYIK  311 (315)
Q Consensus       241 ~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~------~~~L~~L~l~~n~~~--~~~~~~~~-~~~L~  311 (315)
                       .+|..+..+++|++|++++|.++.+.          +..|+.      .++++.|++++|.+.  +..|..+. ++.|+
T Consensus       255 -~lp~~l~~l~~L~~L~l~~N~l~~~~----------~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          255 -RVPAGLPDLKLLQVVYLHTNNITKVG----------VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             -BCCTTGGGCTTCCEEECCSSCCCBCC----------TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             -ecChhhhcCccCCEEECCCCCCCccC----------hhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence             67777888888888888888887543          233332      456889999999876  55666677 78888


Q ss_pred             eecC
Q 039327          312 KVHL  315 (315)
Q Consensus       312 ~l~l  315 (315)
                      .+++
T Consensus       324 ~l~l  327 (332)
T 2ft3_A          324 AIQF  327 (332)
T ss_dssp             TEEC
T ss_pred             hhhc
Confidence            7764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=4e-31  Score=239.92  Aligned_cols=161  Identities=12%  Similarity=0.139  Sum_probs=128.6

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCcc-cccccccc
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGV-TFPKFLYH   78 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~   78 (315)
                      ++++|++|++++|.+.+..+ +.+.++++|++|++++|.+++++.. +.+  .+  +|++|++ ++|.+.+ ..|..+.+
T Consensus        48 ~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           48 ACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGP--LS--SLKYLNL-MGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             SCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHTT--CT--TCCEEEC-TTCCCSSSCSSCSCTT
T ss_pred             cCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHHhcc--CC--CCcEEEC-CCCcccccchhhhhhc
Confidence            46789999999998885544 5788899999999999988886554 444  55  8999999 8888875 35667888


Q ss_pred             CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceE
Q 039327           79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFS  158 (315)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  158 (315)
                      +++|++|++++|...+.+|...++.+++|++|++++|.+.+..|..+..+++|++|+++++... .+|..+...+++|++
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~  200 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY  200 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSE
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccE
Confidence            8999999999888555565433588899999999999988888888888999999999888876 677766656888999


Q ss_pred             EEeecCcCCC
Q 039327          159 FNISTNALHG  168 (315)
Q Consensus       159 L~l~~n~~~~  168 (315)
                      |++++|.+++
T Consensus       201 L~L~~n~l~~  210 (549)
T 2z81_A          201 LELRDTNLAR  210 (549)
T ss_dssp             EEEESCBCTT
T ss_pred             EEccCCcccc
Confidence            9999888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6.3e-30  Score=217.44  Aligned_cols=251  Identities=21%  Similarity=0.213  Sum_probs=218.2

Q ss_pred             cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      .+++.++++++.++.+|..+..      .++.|++ +++.+++..+..+.++++|++|++++|.+++..|..+ +.+++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~------~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L  102 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPP------DTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKL  102 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCT------TCCEEEC-CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTC
T ss_pred             CCCeEEEecCCCccccCccCCC------CCeEEEC-CCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCC
Confidence            4799999999999998887543      8999999 9999998777789999999999999999987767774 899999


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCC--CCCccccCCCCCcEEEc
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHG--SIPSSFGNMNFLRILDL  185 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l  185 (315)
                      ++|++++|.+.. +|..+.  ++|++|++++|.+. .++...+..+++|++|++++|.+..  ..+..+..+++|++|++
T Consensus       103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CEEECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            999999999884 555443  79999999999998 5666555559999999999998863  56778899999999999


Q ss_pred             cCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327          186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       186 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      ++|.+. .+|...   .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. 
T Consensus       179 ~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  253 (330)
T 1xku_A          179 ADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  253 (330)
T ss_dssp             CSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             CCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence            999998 677655   378999999999999888889999999999999999999777778999999999999999887 


Q ss_pred             ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327          266 ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF  305 (315)
Q Consensus       266 l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  305 (315)
                                .+|.++..+++|+.|++++|++++..+..+
T Consensus       254 ----------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          254 ----------KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             ----------SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ----------cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence                      577789999999999999999996666555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.2e-29  Score=217.34  Aligned_cols=268  Identities=24%  Similarity=0.323  Sum_probs=158.2

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +++|++|++++|.+. .++  .+.++++|++|++++|.++.++ .+..  .+  +|++|++ +++.+.+. +. +..+++
T Consensus        65 ~~~L~~L~l~~n~i~-~~~--~~~~l~~L~~L~L~~n~i~~~~-~~~~--l~--~L~~L~l-~~n~i~~~-~~-~~~l~~  133 (347)
T 4fmz_A           65 LTNLEYLNLNGNQIT-DIS--PLSNLVKLTNLYIGTNKITDIS-ALQN--LT--NLRELYL-NEDNISDI-SP-LANLTK  133 (347)
T ss_dssp             CTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCG-GGTT--CT--TCSEEEC-TTSCCCCC-GG-GTTCTT
T ss_pred             cCCccEEEccCCccc-cch--hhhcCCcCCEEEccCCcccCch-HHcC--CC--cCCEEEC-cCCcccCc-hh-hccCCc
Confidence            567888888888776 344  3777888888888888777754 2333  44  7888888 77777643 22 667777


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      |++|++++|......+.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++. +. .+++|+.+++
T Consensus       134 L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l  206 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LA-SLTSLHYFTA  206 (347)
T ss_dssp             CCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GG-GCTTCCEEEC
T ss_pred             eeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-cc-CCCccceeec
Confidence            77777777754433333  3566777777777766654322  556666666666666665 3433 22 2555666666


Q ss_pred             ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      .+|.++...+  +..+++|++|++++|.+. .++.  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++
T Consensus       207 ~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          207 YVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence            6555552222  455555555555555555 3332  22355555555555555442  234455555555555555543


Q ss_pred             ccccccccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327          242 EIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                      .  ..+..+++|++|++++|.+..              +++++|.+.+..|  +..+++|+.|++++|.++
T Consensus       280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            2  234455555555555554332              4455555554444  888999999999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4e-30  Score=218.80  Aligned_cols=259  Identities=22%  Similarity=0.233  Sum_probs=221.8

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      +++.++++++.++.+|..+..      +++.|++ +++.+.+..+..+.++++|++|++++|.+++..|..+ +.+++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~------~l~~L~l-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~  105 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISP------DTTLLDL-QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQ  105 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCT------TCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCC
T ss_pred             cCCEEECCCCCccccCCCCCC------CCeEEEC-CCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCC
Confidence            799999999999999887543      8999999 9999997778889999999999999999987667664 8999999


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC--CCCCccccCCCCCcEEEcc
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH--GSIPSSFGNMNFLRILDLS  186 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~  186 (315)
                      +|++++|.+.. +|..+.  ++|++|++++|.+. .++...+..+++|++|++.+|.++  +..+..+..+ +|++|+++
T Consensus       106 ~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          106 KLYISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             EEECCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             EEECCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            99999999884 555443  89999999999998 677665556999999999999986  3566677777 99999999


Q ss_pred             CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccc
Q 039327          187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI  266 (315)
Q Consensus       187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l  266 (315)
                      +|.+. .+|...   .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+.++..+++|++|++++|++.  
T Consensus       181 ~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--  254 (332)
T 2ft3_A          181 EAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--  254 (332)
T ss_dssp             SSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--
T ss_pred             CCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--
Confidence            99998 677665   368999999999999988888999999999999999999877778999999999999999887  


Q ss_pred             cCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-------ccccceecC
Q 039327          267 TMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-------PLYIKKVHL  315 (315)
Q Consensus       267 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-------~~~L~~l~l  315 (315)
                               .+|.++..+++|+.|++++|.+++..+..+.       .++|+.+++
T Consensus       255 ---------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          255 ---------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             ---------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             ---------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence                     4677899999999999999999966665554       245666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=1.7e-29  Score=224.63  Aligned_cols=284  Identities=24%  Similarity=0.279  Sum_probs=205.5

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      ++++++|+++++.+. .++  .+..+++|++|++++|.+++++. +..  ++  +|++|++ +++.+.+..+  +.++++
T Consensus        45 l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~--l~--~L~~L~l-~~n~l~~~~~--~~~l~~  113 (466)
T 1o6v_A           45 LDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP-LKN--LT--KLVDILM-NNNQIADITP--LANLTN  113 (466)
T ss_dssp             HHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCCCGG--GTTCTT
T ss_pred             hccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh-hhc--cc--cCCEEEC-CCCccccChh--hcCCCC
Confidence            468999999999987 555  58889999999999999998776 554  56  9999999 8898886544  899999


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-------------------CCCcCCCCccEEEcccCcCC
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-------------------LPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~l~~~~~L~~L~l~~~~~~  142 (315)
                      |++|++++|.+++. +.  +..+++|++|++++|.+.+...                   ..+..+++|++|++++|.+.
T Consensus       114 L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          114 LTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC
Confidence            99999999998854 33  5899999999999998765211                   12445566666777666665


Q ss_pred             CCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327          143 GHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR  222 (315)
Q Consensus       143 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  222 (315)
                       .++. +.. +++|++|++.+|.+++..|  ++.+++|++|++++|.+. .++ . +..+++|+.|++++|.+.+..+  
T Consensus       191 -~~~~-l~~-l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          191 -DISV-LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-T-LASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             -CCGG-GGG-CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCGG--
T ss_pred             -CChh-hcc-CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cch-h-hhcCCCCCEEECCCCccccchh--
Confidence             3332 333 6677777777777664333  566777777777777766 333 2 2347778888888887776544  


Q ss_pred             ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc------------ccCCCCccccCCchhhcccCCCCEE
Q 039327          223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD------------ITMPKNHLEGPIPVEFCQLYSLHIL  290 (315)
Q Consensus       223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~------------l~l~~~~l~~~~~~~l~~~~~L~~L  290 (315)
                      +..+++|++|++++|.+++..+  +..+++|+.|++++|++..            +++++|.+.+..|  +..+++|+.|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            6677888888888888775433  6778888888888876543            5667777766544  6677778888


Q ss_pred             ecccCccCCCCCCCcc-ccccceecC
Q 039327          291 DISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       291 ~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      ++++|.+++. + .+. +++|+.|++
T Consensus       337 ~l~~n~l~~~-~-~l~~l~~L~~L~l  360 (466)
T 1o6v_A          337 FFYNNKVSDV-S-SLANLTNINWLSA  360 (466)
T ss_dssp             ECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred             ECCCCccCCc-h-hhccCCCCCEEeC
Confidence            8887777743 3 344 777777764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=2.4e-29  Score=222.34  Aligned_cols=241  Identities=17%  Similarity=0.135  Sum_probs=198.5

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +++|++|++++|.+.+ +|  .+..+++|++|++++|.++++|  +..  ++  +|++|++ ++|.+++. +  +.++++
T Consensus        41 l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~--l~--~L~~L~L-s~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           41 LATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD--LSQ--NT--NLTYLAC-DSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             HTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC--CTT--CT--TCSEEEC-CSSCCSCC-C--CTTCTT
T ss_pred             cCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc--ccc--CC--CCCEEEC-cCCCCcee-e--cCCCCc
Confidence            6789999999999984 45  6899999999999999999875  443  55  9999999 88998864 3  889999


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI  161 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  161 (315)
                      |++|++++|.+++ ++   ++.+++|++|++++|.+.+.   .+..+++|++|++++|...+.++  +.. +++|++|++
T Consensus       108 L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~l  177 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTP-QTQLTTLDC  177 (457)
T ss_dssp             CCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CTT-CTTCCEEEC
T ss_pred             CCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--ccc-CCcCCEEEC
Confidence            9999999999985 44   48899999999999999863   37889999999999996554553  333 789999999


Q ss_pred             ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      ++|.+++ +|  +..+++|+.|++++|.+. .++   +..+++|+.|++++|.+++. |  +..+++|+.|++++|.+++
T Consensus       178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          178 SFNKITE-LD--VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCCC-CC--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCccce-ec--cccCCCCCEEECcCCcCC-eec---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence            9999984 55  788999999999999998 443   33689999999999999884 3  6788999999999999986


Q ss_pred             ccccccccCCCCcEEEccCCccccccCCCCccccCCc
Q 039327          242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP  278 (315)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~  278 (315)
                      ..   .+.+++|+.|++++|.+..+++++|.+.+.+|
T Consensus       248 ~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          248 LD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             cC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence            43   45677888888888888877777776655544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.1e-29  Score=219.15  Aligned_cols=266  Identities=20%  Similarity=0.215  Sum_probs=207.7

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      +++|++|++++|.+.+ ++...+.++++|++|++++|.++.++.. +.+  ++  +|++|++ ++|.+....+..+.+++
T Consensus        68 l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~l~~~~~~~l~  141 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--VP--LLTVLVL-ERNDLSSLPRGIFHNTP  141 (390)
T ss_dssp             CCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CT--TCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred             cccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcC--CC--CCCEEEC-CCCccCcCCHHHhcCCC
Confidence            6789999999999874 4435788999999999999999886544 343  55  8999999 88888854444568899


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCC-------------------ccEEEcccCcC
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRR-------------------LRFLDVSNNNF  141 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-------------------L~~L~l~~~~~  141 (315)
                      +|++|++++|.+++..+.. ++.+++|++|++++|.+.+..   +..+++                   |++|++++|.+
T Consensus       142 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          142 KLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  217 (390)
T ss_dssp             TCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred             CCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCee
Confidence            9999999999988655555 488899999999999887532   333444                   45555555555


Q ss_pred             CCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccc
Q 039327          142 QGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFC  221 (315)
Q Consensus       142 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  221 (315)
                      . .+|...   .++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+. +.
T Consensus       218 ~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~  289 (390)
T 3o6n_A          218 N-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVAL-NL  289 (390)
T ss_dssp             C-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEE-EC
T ss_pred             e-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCccc-Cc
Confidence            4 333322   46899999999988843  468899999999999999984445444 4699999999999999874 45


Q ss_pred             cccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327          222 RNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG  299 (315)
Q Consensus       222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~  299 (315)
                      .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+..+           +  +..+++|+.|++++|++..
T Consensus       290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-----------~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-----------K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-----------C--CCTTCCCSEEECCSSCEEH
T ss_pred             ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-----------C--chhhccCCEEEcCCCCccc
Confidence            5577899999999999998 6677788899999999999998742           2  5678899999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=6.6e-29  Score=228.97  Aligned_cols=133  Identities=19%  Similarity=0.185  Sum_probs=99.3

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      .+++|+|++|.|+ .++..+|.++++|++|+|++|.+++++..... .++  +|++|++ ++|.++...+..+.++++|+
T Consensus        53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~-~L~--~L~~L~L-s~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLS--HLSTLIL-TGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCT--TCCEEEC-TTCCCCEECGGGGTTCTTCC
T ss_pred             CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhc-CCC--CCCEEEc-cCCcCCCCCHHHhcCCCCCC
Confidence            6788888888887 45546788888888888888888886654322 244  8888888 88888766666788888888


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCC
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~  142 (315)
                      +|++++|.+++ ++...++.+++|++|++++|.+.. ..|..+..+++|++|++++|.+.
T Consensus       128 ~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          128 KLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             EEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            88888888874 343335788888888888888765 34566777888888888777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=216.68  Aligned_cols=277  Identities=20%  Similarity=0.172  Sum_probs=223.9

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +.....+.+++.++ .+|. .+.  ++|++|++++|.+++++. .+.+  ++  +|++|++ ++|.+.+..+..+.++++
T Consensus        31 ~~~~~c~~~~~~l~-~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPS-GLT--EAVKSLDLSNNRITYISNSDLQR--CV--NLQALVL-TSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCT-TCC--TTCCEEECTTSCCCEECTTTTTT--CT--TCCEEEC-TTSCCCEECTTTTTTCTT
T ss_pred             CCCeEeeCCCCCcc-cccc-ccc--ccCcEEECCCCcCcccCHHHhcc--CC--CCCEEEC-CCCccCccCHhhcCCCCC
Confidence            44456788888887 6663 332  589999999999998766 4443  55  9999999 999999877888999999


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCc-CCCCCchhhhhcCCCceEE
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNN-FQGHIPVEIGDILPSLFSF  159 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L  159 (315)
                      |++|++++|.++ .++...++.+++|++|++++|.+..... ..+..+++|++|++++|. +. .++...+..+++|++|
T Consensus       102 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             CCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEE
T ss_pred             CCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEE
Confidence            999999999998 4565546899999999999999985433 478899999999999984 55 5544444448999999


Q ss_pred             EeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccccc---CCCCCCEEEcCC
Q 039327          160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF---NLANLRQLQLED  236 (315)
Q Consensus       160 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~  236 (315)
                      ++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+.   ....++.+++.+
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~  258 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN  258 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence            99999999777888999999999999999987 77776665689999999999999876544332   466788899988


Q ss_pred             Ccccc----ccccccccCCCCcEEEccCCccccccCCCCccccCCchh-hcccCCCCEEecccCccCCCCC
Q 039327          237 NRFIG----EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVE-FCQLYSLHILDISDNNISGSLP  302 (315)
Q Consensus       237 n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~  302 (315)
                      +.+.+    .+|.++..+++|++|++++|+++.           +|.. |..+++|+.|++++|++.+..|
T Consensus       259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-----------i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKS-----------VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCcchhhhHHHHhcccCCCEEECCCCCCCc-----------cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            88765    367778899999999999998874           4444 6889999999999999986554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=4.5e-29  Score=228.30  Aligned_cols=268  Identities=19%  Similarity=0.187  Sum_probs=189.9

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +++|++|++++|.+.+..+ ..+.++++|++|++++|.+++++..... .++  +|++|++ ++|.+.+..+..+.++++
T Consensus        74 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~--~L~~L~L-~~n~l~~l~~~~~~~l~~  148 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVP--LLTVLVL-ERNDLSSLPRGIFHNTPK  148 (597)
T ss_dssp             CCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTTT-TCT--TCCEEEC-CSSCCCCCCTTTTTTCTT
T ss_pred             CCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCcCCCCCHHHHc-CCC--CCCEEEe-eCCCCCCCCHHHhccCCC
Confidence            6789999999999985444 5889999999999999999986655322 255  8999999 888988655556789999


Q ss_pred             CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC------------------
Q 039327           82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG------------------  143 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------------  143 (315)
                      |++|++++|.+++..|..+ +.+++|++|++++|.+.+..   +..+++|++|++++|.+.+                  
T Consensus       149 L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred             CCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence            9999999999987666664 88999999999999887632   4445666666666555441                  


Q ss_pred             CCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccc
Q 039327          144 HIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN  223 (315)
Q Consensus       144 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  223 (315)
                      .++...   .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+. +..+
T Consensus       225 ~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~  297 (597)
T 3oja_B          225 VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL-NLYG  297 (597)
T ss_dssp             EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCEE-ECSS
T ss_pred             cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCCC-Cccc
Confidence            222111   2456666666666653  24566677777777777776644444433 466777777777776653 3444


Q ss_pred             cCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327          224 FNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG  299 (315)
Q Consensus       224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~  299 (315)
                      ..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+..           ++  +..+++|+.|++++|++.+
T Consensus       298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-----------~~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-----------LK--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-----------CC--CCTTCCCSEEECCSSCEEH
T ss_pred             ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-----------cC--hhhcCCCCEEEeeCCCCCC
Confidence            55667777777777766 455566666777777777776653           22  5678899999999999863

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.9e-28  Score=207.83  Aligned_cols=225  Identities=20%  Similarity=0.228  Sum_probs=143.4

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      +++.|++ +++.+. .+|..+.++++|++|++++|.++ .+|..+ +.+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        82 ~l~~L~L-~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           82 GRVALEL-RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TCCEEEE-ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ceeEEEc-cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            5556666 555555 45555555566666666666555 555443 55566666666666555 4455555566666666


Q ss_pred             cccCcCCCCCchhhh--------hcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccE
Q 039327          136 VSNNNFQGHIPVEIG--------DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEF  207 (315)
Q Consensus       136 l~~~~~~~~~~~~~~--------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  207 (315)
                      +++|...+.+|..+.        ..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|+.
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~  233 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEE  233 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCE
Confidence            655554445554432        12667777777777766 56666777777777777777776 4555443 4677777


Q ss_pred             EEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCC
Q 039327          208 LALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSL  287 (315)
Q Consensus       208 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L  287 (315)
                      |++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.          +.+|.+++.++++
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~----------~~iP~~l~~L~~L  303 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL----------SRLPSLIAQLPAN  303 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC----------CCCCGGGGGSCTT
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch----------hhccHHHhhccCc
Confidence            777777776666667777777777777777776677777777777777777766543          2667777777777


Q ss_pred             CEEecccCccC
Q 039327          288 HILDISDNNIS  298 (315)
Q Consensus       288 ~~L~l~~n~~~  298 (315)
                      +.+++..+.+.
T Consensus       304 ~~l~l~~~~~~  314 (328)
T 4fcg_A          304 CIILVPPHLQA  314 (328)
T ss_dssp             CEEECCGGGSC
T ss_pred             eEEeCCHHHHH
Confidence            77777766554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.6e-28  Score=215.37  Aligned_cols=248  Identities=20%  Similarity=0.178  Sum_probs=201.2

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      ..+.++.++..++.+|..+..      +++.|++ ++|.+....+..+.++++|+.|++++|.++...+.. +..+++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~------~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~  115 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIST------NTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLN  115 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCT------TCSEEEC-CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCC
T ss_pred             CCCEEEeCCCCcCcCCCCCCC------CCcEEEc-cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-ccCCccCC
Confidence            466788888888888887554      8899999 888888777788889999999999999887554444 58889999


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCc-CCCCCCccccCCCCCcEEEccC
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNA-LHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      +|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++.+|. +....+..|..+++|++|++++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            9999999888766667888999999999999887 6666555558899999998854 4433344688889999999999


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccccc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT  267 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~  267 (315)
                      |.+. .+|.  +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..+.
T Consensus       195 n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          195 CNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             SCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             CcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            9887 6664  335888999999999988888888888999999999999998777888888899999999988877533


Q ss_pred             CCCCccccCCchhhcccCCCCEEecccCccC
Q 039327          268 MPKNHLEGPIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                                +..+..+++|+.|++++|.+.
T Consensus       272 ----------~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          272 ----------HDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ----------TTTTSSCTTCCEEECCSSCEE
T ss_pred             ----------hhHhccccCCCEEEcCCCCcc
Confidence                      566788889999999988764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.1e-28  Score=207.49  Aligned_cols=247  Identities=21%  Similarity=0.200  Sum_probs=172.1

Q ss_pred             ceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccc--cccccccCCCCC
Q 039327            6 EELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT--FPKFLYHQHDLE   83 (315)
Q Consensus         6 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~   83 (315)
                      +.++.+++.++ .+|. .+  .++|++|++++|.++.+|..+.. .++  +|++|++ ++|.+...  .+..+..+++|+
T Consensus        10 ~~l~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~-~l~--~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFD-KLT--QLTKLSL-SSNGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             TEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCCCCTTTTT-TCT--TCSEEEC-CSSCCCEEEEEEHHHHSCSCCC
T ss_pred             CEEEcCCCCcc-cCCC-CC--CCCCCEEECCCCccCccCHhHhh-ccc--cCCEEEC-CCCccCcccCcccccccccccC
Confidence            45677777765 5553 22  25788888888888776665322 245  7888888 77777632  255566778888


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS  162 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  162 (315)
                      +|++++|.++ .+|.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.. +++|++|+++
T Consensus        82 ~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~  158 (306)
T 2z66_A           82 YLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMA  158 (306)
T ss_dssp             EEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECT
T ss_pred             EEECCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECC
Confidence            8888888776 34544 3677888888888887765443 46777788888888888776444444433 7788888888


Q ss_pred             cCcCCC-CCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          163 TNALHG-SIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       163 ~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      +|.+++ ..|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            887764 45667777888888888888777333333 3357788888888888777666667777888888888888877


Q ss_pred             ccccccccCC-CCcEEEccCCccc
Q 039327          242 EIPQSLSKCS-SLEGLYLNNNSLS  264 (315)
Q Consensus       242 ~~~~~~~~~~-~L~~L~l~~n~i~  264 (315)
                      ..+..+..++ +|++|++++|.+.
T Consensus       238 ~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          238 SKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCHHHHHhhhccCCEEEccCCCee
Confidence            7777777764 7888888877765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=2.1e-28  Score=203.80  Aligned_cols=224  Identities=20%  Similarity=0.143  Sum_probs=176.1

Q ss_pred             ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327           31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL  110 (315)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  110 (315)
                      ++++++++.++.+|..+..      ++++|++ +++.+.+..+..+..+++|++|++++|.+++..+.. +..+++|++|
T Consensus        14 ~~~~c~~~~l~~ip~~~~~------~l~~L~l-~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPA------ASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQL   85 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCT------TCSEEEC-TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEE
T ss_pred             eEEEcCcCCcccCCcCCCC------CceEEEe-eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEE
Confidence            5677777778777776433      7888888 888888766677888888888888888887655655 4788888888


Q ss_pred             EeecCC-CcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc
Q 039327          111 FLINDS-IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ  189 (315)
Q Consensus       111 ~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  189 (315)
                      ++++|. +....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            888886 66655777888888888888888887 4444433447888888888888886555667888888889988888


Q ss_pred             ccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          190 LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       165 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            87 566555556888889999988888877888888888999999998888766677888888999998888765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.8e-28  Score=206.77  Aligned_cols=227  Identities=15%  Similarity=0.169  Sum_probs=194.3

Q ss_pred             CcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccc
Q 039327           27 HSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAK  106 (315)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  106 (315)
                      .+++++|++++|.++.+|..+.+  ++  +|++|++ ++|.+. .+|..+.++++|++|++++|.++ .+|..+ ..+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~--l~--~L~~L~L-~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~  151 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFR--LS--HLQHMTI-DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNR  151 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGG--GT--TCSEEEE-ESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTT
T ss_pred             ccceeEEEccCCCchhcChhhhh--CC--CCCEEEC-CCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcC
Confidence            46788888888888888877665  55  8888888 888887 78888888889999999988888 777774 78889


Q ss_pred             cceeEeecCCCcCcCcCCCcC---------CCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCC
Q 039327          107 LETLFLINDSIGGPFRLPIHP---------HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM  177 (315)
Q Consensus       107 L~~L~l~~~~~~~~~~~~l~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~  177 (315)
                      |++|++++|.+.+.+|..+..         +++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..+..+
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l  228 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHL  228 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGC
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccC
Confidence            999999988777777776654         899999999999998 88888776 889999999999998 566678999


Q ss_pred             CCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEE
Q 039327          178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLY  257 (315)
Q Consensus       178 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  257 (315)
                      ++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..++.+++++.++
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCEEECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            9999999999988877777665 689999999999998888888899999999999999999989999999999999999


Q ss_pred             ccCCcccc
Q 039327          258 LNNNSLSD  265 (315)
Q Consensus       258 l~~n~i~~  265 (315)
                      +..+.+..
T Consensus       308 l~~~~~~~  315 (328)
T 4fcg_A          308 VPPHLQAQ  315 (328)
T ss_dssp             CCGGGSCC
T ss_pred             CCHHHHHH
Confidence            98776554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.3e-28  Score=215.47  Aligned_cols=248  Identities=20%  Similarity=0.173  Sum_probs=198.2

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      ..+.++.++..++.+|..+..      ++++|++ ++|.+.+..+..+.++++|+.|++++|.+++..+.. +..+++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~------~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~  126 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPS------NTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLN  126 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCT------TCSEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCC
T ss_pred             CCcEEEECCCCcCccCCCCCC------CccEEEC-cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCC
Confidence            356788888888888877544      8899999 888888877888888999999999999887655555 47888999


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC-cCCCCCCccccCCCCCcEEEccC
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN-ALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      +|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++.+| .+....+..+..+++|++|++++
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence            9999999888766677888899999999998887 666655555889999999884 44433344678888999999999


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccccc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT  267 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~  267 (315)
                      |.+. .+|.  +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..+.
T Consensus       206 n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          206 CNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             SCCS-SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             Cccc-cccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            9887 5553  235888999999999988888888888899999999999988777888888889999999888877432


Q ss_pred             CCCCccccCCchhhcccCCCCEEecccCccC
Q 039327          268 MPKNHLEGPIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                                +..+..+++|+.|++++|.+.
T Consensus       283 ----------~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          283 ----------HDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ----------TTSSTTCTTCCEEECCSSCEE
T ss_pred             ----------hHHhccccCCCEEEccCCCcC
Confidence                      456778888999999988764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=1.2e-27  Score=211.59  Aligned_cols=263  Identities=19%  Similarity=0.202  Sum_probs=194.3

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      ++++|++|++++|.+.+ ++   +..+++|++|++++|.+++++  +..  ++  +|++|++ ++|.+.+ ++  +..++
T Consensus        62 ~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~--l~--~L~~L~L-~~N~l~~-l~--~~~l~  127 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTP--LT--KLTYLNC-DTNKLTK-LD--VSQNP  127 (457)
T ss_dssp             GCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTT--CT--TCCEEEC-CSSCCSC-CC--CTTCT
T ss_pred             ccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCC--CC--cCCEEEC-CCCcCCe-ec--CCCCC
Confidence            36889999999999984 33   788999999999999998875  443  55  8999999 8888886 34  78899


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN  160 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  160 (315)
                      +|++|++++|.+++ ++   ++.+++|++|++++|...+.+  .+..+++|++|++++|.++ .+|  +.. +++|+.|+
T Consensus       128 ~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~--l~~-l~~L~~L~  197 (457)
T 3bz5_A          128 LLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--VSQ-NKLLNRLN  197 (457)
T ss_dssp             TCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC--CTT-CTTCCEEE
T ss_pred             cCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec--ccc-CCCCCEEE
Confidence            99999999999986 33   478899999999999655444  4778899999999999988 566  333 78999999


Q ss_pred             eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCC-------CCCEEE
Q 039327          161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLA-------NLRQLQ  233 (315)
Q Consensus       161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~  233 (315)
                      +++|.+++.   .++.+++|++|++++|.+. .+|   +..+++|+.|++++|.+.+..+..+..+.       +|+.++
T Consensus       198 l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          198 CDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             CCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred             CcCCcCCee---ccccCCCCCEEECcCCccc-ccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEE
Confidence            999988853   3788899999999999988 466   33588899999999988876544333322       344555


Q ss_pred             cCCCccccccccccccCCCCcEEEccCCc----------------------cccccCCCCccccCCchhhcccCCCCEEe
Q 039327          234 LEDNRFIGEIPQSLSKCSSLEGLYLNNNS----------------------LSDITMPKNHLEGPIPVEFCQLYSLHILD  291 (315)
Q Consensus       234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~----------------------i~~l~l~~~~l~~~~~~~l~~~~~L~~L~  291 (315)
                      +++|.+.+.+|  .+.+++|+.|++++|.                      +..+++++|++++ ++  ++.+++|+.|+
T Consensus       271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~  345 (457)
T 3bz5_A          271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLS  345 (457)
T ss_dssp             CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEE
T ss_pred             CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEE
Confidence            55555444444  3456777777777764                      2234455555554 22  56666666677


Q ss_pred             cccCccCC
Q 039327          292 ISDNNISG  299 (315)
Q Consensus       292 l~~n~~~~  299 (315)
                      +++|++++
T Consensus       346 l~~N~l~~  353 (457)
T 3bz5_A          346 CVNAHIQD  353 (457)
T ss_dssp             CCSSCCCB
T ss_pred             CCCCCCCC
Confidence            76666663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.1e-28  Score=205.83  Aligned_cols=249  Identities=18%  Similarity=0.157  Sum_probs=183.1

Q ss_pred             ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceeccc--CChhhhhcccccc
Q 039327           31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGK--FPNWLLENNAKLE  108 (315)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~  108 (315)
                      +.++++++.++.+|..+..      ++++|++ +++.+....+..+.++++|++|++++|.++..  .+..+ ..+++|+
T Consensus        10 ~~l~c~~~~l~~ip~~~~~------~l~~L~L-~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~   81 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPS------SATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLK   81 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCT------TCCEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCC
T ss_pred             CEEEcCCCCcccCCCCCCC------CCCEEEC-CCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccC
Confidence            5677777778777776443      7888888 77777744444567888888888888877632  24443 5678888


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCch-hhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV-EIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      +|++++|.+.. ++..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        82 ~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           82 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             EEECCSCSEEE-EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcccc-ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            88888888763 5556778888888888888877 4443 3333477888888888888766677778888888888888


Q ss_pred             ccccC-cCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccc
Q 039327          188 NQLTG-EIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI  266 (315)
Q Consensus       188 n~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l  266 (315)
                      |.+.+ ..|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. 
T Consensus       160 n~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-  237 (306)
T 2z66_A          160 NSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-  237 (306)
T ss_dssp             CEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-
T ss_pred             CccccccchhH-HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-
Confidence            88774 23433 3457888888888888887777777788888888888888876666677778888888888887664 


Q ss_pred             cCCCCccccCCchhhcccC-CCCEEecccCccCCC
Q 039327          267 TMPKNHLEGPIPVEFCQLY-SLHILDISDNNISGS  300 (315)
Q Consensus       267 ~l~~~~l~~~~~~~l~~~~-~L~~L~l~~n~~~~~  300 (315)
                               ..+..+..++ +|+.|++++|.++..
T Consensus       238 ---------~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          238 ---------SKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             ---------CSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             ---------cCHHHHHhhhccCCEEEccCCCeecc
Confidence                     3456677774 788888888887643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=211.58  Aligned_cols=275  Identities=18%  Similarity=0.148  Sum_probs=220.4

Q ss_pred             cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327           24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN  103 (315)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  103 (315)
                      ...|+.....+++++.++.+|..+..      ++++|++ +++.+.+..+..+.++++|++|++++|.+++..+.. ++.
T Consensus        27 ~~~C~~~~~c~~~~~~l~~iP~~~~~------~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~   98 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLNSIPSGLTE------AVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS   98 (353)
T ss_dssp             CCEECTTSEEECCSTTCSSCCTTCCT------TCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTT
T ss_pred             CCCCCCCeEeeCCCCCcccccccccc------cCcEEEC-CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCC
Confidence            34566777789999999999987554      8999999 999998766668999999999999999998665665 488


Q ss_pred             ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCch-hhhhcCCCceEEEeecC-cCCCCCCccccCCCCCc
Q 039327          104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV-EIGDILPSLFSFNISTN-ALHGSIPSSFGNMNFLR  181 (315)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~  181 (315)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|. ..+..+++|++|++++| .+....+..+..+++|+
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            999999999999998655555889999999999999998 6776 44445899999999998 46655567889999999


Q ss_pred             EEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccc---cCCCCcEEEc
Q 039327          182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLS---KCSSLEGLYL  258 (315)
Q Consensus       182 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l  258 (315)
                      +|++++|.+.+..+..+. .+++|+.|++++|.+.......+..+++|+.|++++|.+++..+..+.   ..+.++.+++
T Consensus       178 ~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             EEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence            999999999855455544 689999999999998765555555689999999999998865443332   3567788888


Q ss_pred             cCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCC-cc-ccccceecC
Q 039327          259 NNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC-FH-PLYIKKVHL  315 (315)
Q Consensus       259 ~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~-~~~L~~l~l  315 (315)
                      +++.+..     +.+. .+|.++..+++|+.|++++|+++ .+|.. +. +++|++|++
T Consensus       257 ~~~~l~~-----~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          257 RNVKITD-----ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             ESCBCCH-----HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             ccccccC-----cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence            8776553     2222 46788999999999999999999 66665 46 999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=3.1e-27  Score=217.82  Aligned_cols=298  Identities=21%  Similarity=0.191  Sum_probs=209.4

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      ++++|++|+|++|.+. .++.++|.++++|++|+|++|.++++|..... .+.  +|++|++ +.|.+++..+..+.+++
T Consensus        74 ~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~-~L~--~L~~L~L-s~N~l~~l~~~~~~~L~  148 (635)
T 4g8a_A           74 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLS--SLQKLVA-VETNLASLENFPIGHLK  148 (635)
T ss_dssp             TCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGT-TCT--TCCEEEC-TTSCCCCSTTCCCTTCT
T ss_pred             CCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhc-CCC--CCCEEEC-CCCcCCCCChhhhhcCc
Confidence            4788999999999997 45546789999999999999999887765432 244  8999999 88888866666788888


Q ss_pred             CCCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCC----------------------------------
Q 039327           81 DLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPI----------------------------------  125 (315)
Q Consensus        81 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----------------------------------  125 (315)
                      +|++|++++|.++. ..|.. ++.+++|++|++++|.+.+..+..+                                  
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~  227 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH  227 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred             ccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence            88888888888764 34554 4778888888887775543111100                                  


Q ss_pred             --------------------------------------------------------------------------------
Q 039327          126 --------------------------------------------------------------------------------  125 (315)
Q Consensus       126 --------------------------------------------------------------------------------  125 (315)
                                                                                                      
T Consensus       228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  307 (635)
T 4g8a_A          228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN  307 (635)
T ss_dssp             EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred             hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence                                                                                            


Q ss_pred             -----------------cCCCCccEEEcccCcCCC---------------------------------------------
Q 039327          126 -----------------HPHRRLRFLDVSNNNFQG---------------------------------------------  143 (315)
Q Consensus       126 -----------------~~~~~L~~L~l~~~~~~~---------------------------------------------  143 (315)
                                       .....++.|++.++.+..                                             
T Consensus       308 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~  387 (635)
T 4g8a_A          308 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG  387 (635)
T ss_dssp             CSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred             cccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence                             001122333333222110                                             


Q ss_pred             CCchhhhh----------------------cCCCceEEEeecCcCCCCC-CccccCCCCCcEEEccCccccCcCchhhcc
Q 039327          144 HIPVEIGD----------------------ILPSLFSFNISTNALHGSI-PSSFGNMNFLRILDLSSNQLTGEIPERLAV  200 (315)
Q Consensus       144 ~~~~~~~~----------------------~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~  200 (315)
                      ..+.....                      .+++|+.+++..+...... +..+..+++++.++++.|.+. ..+...+.
T Consensus       388 ~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~-~~~~~~~~  466 (635)
T 4g8a_A          388 CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN  466 (635)
T ss_dssp             ECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE-ECCTTTTT
T ss_pred             ccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc-cccccccc
Confidence            00000000                      1233344444433333222 345778889999999999988 44444455


Q ss_pred             CCCcccEEEccCCCCC-CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCch
Q 039327          201 GCVNLEFLALSNNNLK-GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPV  279 (315)
Q Consensus       201 ~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~  279 (315)
                      .++.++.|++++|... ...|..+..+++|++|++++|++++..|.++..+++|++|++++|+|..+.          +.
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----------~~  536 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----------TF  536 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC----------CG
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC----------hh
Confidence            7889999999998744 456778888999999999999999888888999999999999999887533          67


Q ss_pred             hhcccCCCCEEecccCccCCCCCCCcc-c-cccceecC
Q 039327          280 EFCQLYSLHILDISDNNISGSLPSCFH-P-LYIKKVHL  315 (315)
Q Consensus       280 ~l~~~~~L~~L~l~~n~~~~~~~~~~~-~-~~L~~l~l  315 (315)
                      +|..+++|+.|++++|++++..|..+. + ++|++|++
T Consensus       537 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            788899999999999999988888887 5 68888875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.1e-29  Score=214.05  Aligned_cols=250  Identities=21%  Similarity=0.229  Sum_probs=179.7

Q ss_pred             cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCc-cccccccc-------cCCCCCeEEecCceeccc
Q 039327           24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDG-VTFPKFLY-------HQHDLEDVHLSHIKMNGK   95 (315)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~-------~~~~L~~L~l~~~~~~~~   95 (315)
                      +...++|++|++++|.+ .+|..+..      .++.|++ +++.+. ..++..+.       ++++|++|++++|.+++.
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~------~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  110 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTD------IIKSLSL-KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT  110 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHH------HHHHCCC-CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred             EccCCCceeEeeccccc-ccHHHHHH------HHhhccc-ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence            44566788888888888 76766544      4778888 767763 34555444       678888888888888877


Q ss_pred             CChhhh-hcccccceeEeecCCCcCcCcCCCcCC-----CCccEEEcccCcCCCCCc-hhhhhcCCCceEEEeecCcCCC
Q 039327           96 FPNWLL-ENNAKLETLFLINDSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHIP-VEIGDILPSLFSFNISTNALHG  168 (315)
Q Consensus        96 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~  168 (315)
                      +|..++ +.+++|++|++++|.+.+. |..+..+     ++|++|++++|.+. .++ ..+. .+++|++|++++|.+.+
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~-~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVR-VFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCC-CCSSCCEEECCSCTTCH
T ss_pred             hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhc-cCCCCCEEECCCCCcCc
Confidence            777643 6788888888888888765 6555555     78888888888887 444 4444 37888888888887653


Q ss_pred             C--CCccc--cCCCCCcEEEccCccccC--cCchhhccCCCcccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCcccc
Q 039327          169 S--IPSSF--GNMNFLRILDLSSNQLTG--EIPERLAVGCVNLEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       169 ~--~~~~l--~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      .  .+..+  ..+++|++|++++|.+.+  .++..++..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++ 
T Consensus       188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred             chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence            3  22333  778888888888888762  2333444467888888888888877553 44556788888888888887 


Q ss_pred             ccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327          242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG  299 (315)
Q Consensus       242 ~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~  299 (315)
                      .+|..+.  ++|++|++++|+++.           +|. +..+++|+.|++++|++++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~l~~-----------~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNRLDR-----------NPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSCCCS-----------CCC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcc--CCceEEECCCCCCCC-----------Chh-HhhCCCCCEEeccCCCCCC
Confidence            6666655  778888888887763           344 7778888888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=7.8e-31  Score=233.05  Aligned_cols=237  Identities=19%  Similarity=0.135  Sum_probs=139.0

Q ss_pred             CCccceEEeecCcccc----cCCCcccCCCcccceeecccccccc-cccccccCC-CCccccEEEEeccCCCCcc----c
Q 039327            2 LTSIEELYLSNNHFQI----PISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLT-APNFQLQSLLLSSGYGDGV----T   71 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~   71 (315)
                      +++|++|++++|.+.+    .++ ..+..+++|++|++++|.+.+ .+..+.... ....+|++|++ ++|.+++    .
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-~~n~i~~~~~~~  104 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL-QNCCLTGAGCGV  104 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC-TTSCCBGGGHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEc-cCCCCCHHHHHH
Confidence            4677888888887762    223 356667888888888887765 222222100 11115888888 7777774    3


Q ss_pred             cccccccCCCCCeEEecCceecccCChhh----hhcccccceeEeecCCCcCcC----cCCCcCCCCccEEEcccCcCCC
Q 039327           72 FPKFLYHQHDLEDVHLSHIKMNGKFPNWL----LENNAKLETLFLINDSIGGPF----RLPIHPHRRLRFLDVSNNNFQG  143 (315)
Q Consensus        72 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~  143 (315)
                      ++..+..+++|++|++++|.+++..+..+    ....++|++|++++|.+.+..    +..+..+++|++|++++|.+.+
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence            56777788888888888888765444332    122456777877777776532    3445556777777777776653


Q ss_pred             CCchhhhh----cCCCceEEEeecCcCCCC----CCccccCCCCCcEEEccCccccCcC----chhhccCCCcccEEEcc
Q 039327          144 HIPVEIGD----ILPSLFSFNISTNALHGS----IPSSFGNMNFLRILDLSSNQLTGEI----PERLAVGCVNLEFLALS  211 (315)
Q Consensus       144 ~~~~~~~~----~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~  211 (315)
                      ..+..+..    ..++|++|++++|.++..    ++..+..+++|++|++++|.+.+..    ...++..+++|+.|+++
T Consensus       185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW  264 (461)
T ss_dssp             HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence            22222221    234677777777766632    3445556667777777776655221    12222235566666666


Q ss_pred             CCCCCCc----ccccccCCCCCCEEEcCCCccc
Q 039327          212 NNNLKGH----MFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       212 ~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +|.++..    .+..+..+++|++|++++|.++
T Consensus       265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            6665542    2333444555666666655554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=9.9e-27  Score=206.00  Aligned_cols=242  Identities=24%  Similarity=0.231  Sum_probs=207.2

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      ..+.++. .+..++ .+|..+.  ++++.|++++|.+++..+.. +..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        55 ~~~~v~c-~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVC-TRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEEC-CSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCcEEEE-CCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence            3567777 666665 4665443  68999999999998766666 48999999999999999988888999999999999


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++++|...+.++...+..+++|+.|++++|.+
T Consensus       130 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            9999998 677766666999999999999999666668899999999999996555577777777899999999999999


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN  295 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  295 (315)
                      .+. + .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+          .+.+|..+++|+.|++++|
T Consensus       209 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          209 KDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI----------ERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             SSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECCSS
T ss_pred             ccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE----------CHHHhcCCCCCCEEECCCC
Confidence            875 2 477899999999999999988899999999999999999988753          3778999999999999999


Q ss_pred             ccCCCCCCCcc-ccccceecC
Q 039327          296 NISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       296 ~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      .+++..+..+. +++|+.|++
T Consensus       277 ~l~~~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          277 NLSSLPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             CCSCCCTTSSTTCTTCCEEEC
T ss_pred             cCCccChHHhccccCCCEEEc
Confidence            99977777777 899999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=3e-26  Score=202.37  Aligned_cols=261  Identities=25%  Similarity=0.306  Sum_probs=161.3

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      +|++|++++|.+.+ +|.    .+++|++|++++|.+++++..     .+  +|++|++ ++|.+.+ +| .+.++++|+
T Consensus        92 ~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~-----~~--~L~~L~L-~~n~l~~-lp-~~~~l~~L~  156 (454)
T 1jl5_A           92 HLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL-----PP--LLEYLGV-SNNQLEK-LP-ELQNSSFLK  156 (454)
T ss_dssp             TCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC-----CT--TCCEEEC-CSSCCSS-CC-CCTTCTTCC
T ss_pred             CCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC-----CC--CCCEEEC-cCCCCCC-Cc-ccCCCCCCC
Confidence            45555555555543 331    124566666666666554332     12  7888888 7777775 56 477888888


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST  163 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  163 (315)
                      +|++++|.+++ +|..    .++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..    .++|++|++++
T Consensus       157 ~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~  224 (454)
T 1jl5_A          157 IIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGN  224 (454)
T ss_dssp             EEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCS
T ss_pred             EEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcC
Confidence            88888888774 5542    3578888888888775 44 5778888888888888776 45432    35788888888


Q ss_pred             CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc--
Q 039327          164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG--  241 (315)
Q Consensus       164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--  241 (315)
                      |.++ .+|. +..+++|++|++++|.+. .+|.    .+++|+.|++++|.+.+. |.   .+++|++|++++|.+++  
T Consensus       225 n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~  293 (454)
T 1jl5_A          225 NILE-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLS  293 (454)
T ss_dssp             SCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEES
T ss_pred             CcCC-cccc-cCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCccc
Confidence            8777 5663 777888888888888776 4443    145667777777666552 21   12455555555555543  


Q ss_pred             ccccc-------------cccC-CCCcEEEccCCcccc----------ccCCCCccccCCchhhcccCCCCEEecccCcc
Q 039327          242 EIPQS-------------LSKC-SSLEGLYLNNNSLSD----------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNI  297 (315)
Q Consensus       242 ~~~~~-------------~~~~-~~L~~L~l~~n~i~~----------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~  297 (315)
                      ..+..             +..+ ++|++|++++|++..          +++++|.++ .+|.   .+++|+.|++++|++
T Consensus       294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred             CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence            11110             1112 356666666665443          445555555 3444   356677777777777


Q ss_pred             CC--CCCCCcc
Q 039327          298 SG--SLPSCFH  306 (315)
Q Consensus       298 ~~--~~~~~~~  306 (315)
                      ++  .+|..+.
T Consensus       370 ~~l~~ip~~l~  380 (454)
T 1jl5_A          370 REFPDIPESVE  380 (454)
T ss_dssp             SSCCCCCTTCC
T ss_pred             CcCCCChHHHH
Confidence            76  5566655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=204.34  Aligned_cols=247  Identities=19%  Similarity=0.155  Sum_probs=196.0

Q ss_pred             cceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      .+.++.++..+. .+|. .+.  ++++.|+|++|.++.++ ..+.+  ++  +|++|++ ++|.+....+..+.++++|+
T Consensus        45 ~~~v~c~~~~l~-~iP~-~~~--~~l~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-s~n~i~~i~~~~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPD-GIS--TNTRLLNLHENQIQIIKVNSFKH--LR--HLEILQL-SRNHIRTIEIGAFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCS-SCCS-CCC--TTCSEEECCSCCCCEECTTTTSS--CS--SCCEEEC-CSSCCCEECGGGGTTCSSCC
T ss_pred             CCEEEeCCCCcC-cCCC-CCC--CCCcEEEccCCcCCeeCHHHhhC--CC--CCCEEEC-CCCcCCccChhhccCCccCC
Confidence            456677777776 5663 332  57899999999988855 34433  55  8999999 88888877778888999999


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST  163 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  163 (315)
                      +|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|+++++...+.++...+..+++|++|++++
T Consensus       116 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          116 TLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             EEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             EEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            9999999888 444433588899999999999988766778889999999999885444466665555688999999999


Q ss_pred             CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327          164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI  243 (315)
Q Consensus       164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (315)
                      |.++ .+| .+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus       195 n~l~-~~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          195 CNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             SCCS-SCC-CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             CcCc-ccc-ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            9888 555 4788889999999999888 444444557889999999999998888888888999999999999998776


Q ss_pred             ccccccCCCCcEEEccCCccc
Q 039327          244 PQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       244 ~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +..+..+++|+.|++++|.+.
T Consensus       272 ~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          272 HDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTTTSSCTTCCEEECCSSCEE
T ss_pred             hhHhccccCCCEEEcCCCCcc
Confidence            777788899999999988754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=1.5e-28  Score=207.64  Aligned_cols=268  Identities=15%  Similarity=0.108  Sum_probs=200.4

Q ss_pred             cceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      ++..+++.+.+..... ..+..+++|++|++++|.+++++ ..+.+  ++  +|++|++ ++|.+.+..+  +..+++|+
T Consensus        12 l~i~~ls~~~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-s~n~l~~~~~--~~~l~~L~   83 (317)
T 3o53_A           12 YKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAP--FT--KLELLNL-SSNVLYETLD--LESLSTLR   83 (317)
T ss_dssp             EEEESCCTTTHHHHHH-HHHTTGGGCSEEECTTSCCCCCCHHHHTT--CT--TCCEEEC-TTSCCEEEEE--ETTCTTCC
T ss_pred             eeEeeccccchhhhHH-HHhccCCCCCEEECcCCccCcCCHHHhhC--CC--cCCEEEC-CCCcCCcchh--hhhcCCCC
Confidence            4445555555542222 34556778999999999998854 44444  55  8999999 8888876554  88899999


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST  163 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  163 (315)
                      +|++++|.+++. +     ..++|++|++++|.+.+..+.   .+++|++|++++|.++ .++...+..+++|++|++++
T Consensus        84 ~L~Ls~n~l~~l-~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~  153 (317)
T 3o53_A           84 TLDLNNNYVQEL-L-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKL  153 (317)
T ss_dssp             EEECCSSEEEEE-E-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTT
T ss_pred             EEECcCCccccc-c-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCC
Confidence            999999988742 2     347899999999988765443   3578999999999988 45443333478999999999


Q ss_pred             CcCCCCCCccc-cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327          164 NALHGSIPSSF-GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE  242 (315)
Q Consensus       164 n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (315)
                      |.+++..+..+ ..+++|++|++++|.+. .++...  .+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++ .
T Consensus       154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~  228 (317)
T 3o53_A          154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-L  228 (317)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-E
T ss_pred             CCCCcccHHHHhhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-c
Confidence            98886555555 46889999999999887 555443  38889999999999887544 4778899999999999988 5


Q ss_pred             cccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC-ccCCCCCCC
Q 039327          243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN-NISGSLPSC  304 (315)
Q Consensus       243 ~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~  304 (315)
                      +|..+..+++|+.|++++|.+..         +.++.++..+++|+.+++.++ .+++..|..
T Consensus       229 l~~~~~~l~~L~~L~l~~N~~~~---------~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          229 IEKALRFSQNLEHFDLRGNGFHC---------GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             ECTTCCCCTTCCEEECTTCCCBH---------HHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             hhhHhhcCCCCCEEEccCCCccC---------cCHHHHHhccccceEEECCCchhccCCchhc
Confidence            67778888999999999887762         145778888888999988854 455555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.6e-26  Score=191.10  Aligned_cols=227  Identities=20%  Similarity=0.188  Sum_probs=193.0

Q ss_pred             EEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcc
Q 039327           58 QSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVS  137 (315)
Q Consensus        58 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  137 (315)
                      ++++. ++..+. .+|..+  .++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        14 ~~~~c-~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSC-PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEEC-CSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEc-CcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            56777 666666 355433  578999999999998655555 5899999999999999998778899999999999999


Q ss_pred             cCc-CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCC
Q 039327          138 NNN-FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK  216 (315)
Q Consensus       138 ~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  216 (315)
                      +|. +. .++...+..+++|++|++.+|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++
T Consensus        89 ~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           89 DNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             SCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccc
Confidence            997 66 664444444899999999999999777888999999999999999998 666665567999999999999999


Q ss_pred             CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCc
Q 039327          217 GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN  296 (315)
Q Consensus       217 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  296 (315)
                      +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..          ..+.++..+++|+.|++++|+
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA----------LPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC----------CCHHHHTTCTTCCEEECCSSC
T ss_pred             ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc----------CCHHHcccCcccCEEeccCCC
Confidence            8777788899999999999999998888999999999999999998874          335679999999999999999


Q ss_pred             cCCCC
Q 039327          297 ISGSL  301 (315)
Q Consensus       297 ~~~~~  301 (315)
                      +....
T Consensus       237 ~~c~~  241 (285)
T 1ozn_A          237 WVCDC  241 (285)
T ss_dssp             EECSG
T ss_pred             ccCCC
Confidence            87443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=1.6e-26  Score=204.18  Aligned_cols=208  Identities=20%  Similarity=0.258  Sum_probs=93.7

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCCCCc---------------------------
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLTAPN---------------------------   54 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~---------------------------   54 (315)
                      +.|+++++++|.+ +.+| ..+.++++|++|++++|.+.+ +|..+++  ...                           
T Consensus        11 ~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~--l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l   86 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGE--QREMAVSRLRDCLDRQAHELELNNLGLSSL   86 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCC--CHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred             ccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCccccc--chhcchhhhhhhhccCCCEEEecCCccccC
Confidence            4555666666665 4555 345566666666666555543 4443332  110                           


Q ss_pred             ----cccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCC
Q 039327           55 ----FQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRR  130 (315)
Q Consensus        55 ----~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~  130 (315)
                          .+|++|++ +++.+.+ +|..   .++|++|++++|.+++ ++.    ..++|++|++++|.+.+ +| .+..+++
T Consensus        87 p~~~~~L~~L~l-~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~  154 (454)
T 1jl5_A           87 PELPPHLESLVA-SCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSF  154 (454)
T ss_dssp             CSCCTTCSEEEC-CSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             CCCcCCCCEEEc-cCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence                14555555 4444443 3321   2445555555555442 221    11466666666666654 44 4666666


Q ss_pred             ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEc
Q 039327          131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL  210 (315)
Q Consensus       131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  210 (315)
                      |++|++++|.++ .+|..    ..+|++|++++|.+++ +| .++.+++|++|++++|.+. .+|..    .++|+.|++
T Consensus       155 L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l  222 (454)
T 1jl5_A          155 LKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVA  222 (454)
T ss_dssp             CCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEEC
T ss_pred             CCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEEC
Confidence            666666666665 34432    3466666666666653 44 3566666666666666555 23321    234555555


Q ss_pred             cCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          211 SNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       211 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      ++|.+.. .| .+..+++|++|++++|.++
T Consensus       223 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          223 GNNILEE-LP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             cCCcCCc-cc-ccCCCCCCCEEECCCCcCC
Confidence            5555542 22 2444555555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=3.6e-29  Score=222.31  Aligned_cols=291  Identities=19%  Similarity=0.163  Sum_probs=145.7

Q ss_pred             CCccceEEeecCcccccCCCcccCCCc----ccceeecccccccc-----cccccccCCCCccccEEEEeccCCCCcccc
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHS----RLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVTF   72 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   72 (315)
                      +++|++|++++|.+.+..+......++    +|++|++++|.++.     ++..+.+  .+  +|++|++ ++|.+.+..
T Consensus        55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--~~--~L~~L~L-s~n~i~~~~  129 (461)
T 1z7x_W           55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT--LP--TLQELHL-SDNLLGDAG  129 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS--CT--TCCEEEC-CSSBCHHHH
T ss_pred             CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc--CC--ceeEEEC-CCCcCchHH
Confidence            456666777666665322211112233    46666666666653     3444333  33  6666666 556555433


Q ss_pred             cccccc-----CCCCCeEEecCceecccC----ChhhhhcccccceeEeecCCCcCcCcCCCc-----CCCCccEEEccc
Q 039327           73 PKFLYH-----QHDLEDVHLSHIKMNGKF----PNWLLENNAKLETLFLINDSIGGPFRLPIH-----PHRRLRFLDVSN  138 (315)
Q Consensus        73 ~~~l~~-----~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~  138 (315)
                      +..+..     .++|++|++++|.+++..    +.. +..+++|++|++++|.+.+..+..+.     ..++|++|++++
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  208 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES  208 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred             HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence            332221     345666666666655432    222 24456666666666655432222221     234566666666


Q ss_pred             CcCCCC----CchhhhhcCCCceEEEeecCcCCCCC-----CccccCCCCCcEEEccCccccCc----CchhhccCCCcc
Q 039327          139 NNFQGH----IPVEIGDILPSLFSFNISTNALHGSI-----PSSFGNMNFLRILDLSSNQLTGE----IPERLAVGCVNL  205 (315)
Q Consensus       139 ~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L  205 (315)
                      |.+++.    ++..+.. +++|++|++++|.++...     +..+..+++|++|++++|.+.+.    ++..+. .+++|
T Consensus       209 n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L  286 (461)
T 1z7x_W          209 CGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESL  286 (461)
T ss_dssp             SCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTC
T ss_pred             CCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCc
Confidence            655521    2222322 556666666665544211     11122355566666666555421    222222 25555


Q ss_pred             cEEEccCCCCCCccccccc-----CCCCCCEEEcCCCccccc----cccccccCCCCcEEEccCCcccc-----------
Q 039327          206 EFLALSNNNLKGHMFCRNF-----NLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNNNSLSD-----------  265 (315)
Q Consensus       206 ~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~-----------  265 (315)
                      +.|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+           
T Consensus       287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  366 (461)
T 1z7x_W          287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG  366 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence            5666655555432221111     124555555555555433    23334445555555555553322           


Q ss_pred             --------ccCCCCcccc----CCchhhcccCCCCEEecccCccCCC
Q 039327          266 --------ITMPKNHLEG----PIPVEFCQLYSLHILDISDNNISGS  300 (315)
Q Consensus       266 --------l~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~~~~~  300 (315)
                              +++++|.+++    .++.++..+++|+.|++++|++++.
T Consensus       367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence                    3344444443    5677788888899999999888754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=2.6e-28  Score=205.71  Aligned_cols=246  Identities=21%  Similarity=0.142  Sum_probs=197.4

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccc--cccccc-------cCCCCccccEEEEeccCCCCccccc
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA--EITESH-------SLTAPNFQLQSLLLSSGYGDGVTFP   73 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~   73 (315)
                      ++|+.+++++|.+  .+|. .+...  |++|++++|.+..  +|..+.       +  ++  +|++|++ ++|.+.+..|
T Consensus        43 ~~L~~l~l~~n~l--~~p~-~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~  112 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLG-QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLG--IS--GLQELTL-ENLEVTGTAP  112 (312)
T ss_dssp             EECTTHHHHCCTT--CCCH-HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHT--TS--CCCEEEE-EEEBCBSCCC
T ss_pred             CCceeEeeccccc--ccHH-HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcC--cC--CccEEEc-cCCcccchhH
Confidence            4688888899888  5563 34433  9999999999865  454432       2  44  8999999 9999998888


Q ss_pred             ccc--ccCCCCCeEEecCceecccCChhhhhcc-----cccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCC--
Q 039327           74 KFL--YHQHDLEDVHLSHIKMNGKFPNWLLENN-----AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH--  144 (315)
Q Consensus        74 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--  144 (315)
                      ..+  ..+++|++|++++|.+++. |..+ +.+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  190 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG  190 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence            876  8899999999999999876 7654 566     8999999999999988778999999999999999987643  


Q ss_pred             Cchhh-hhcCCCceEEEeecCcCCC--CCC-ccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccc
Q 039327          145 IPVEI-GDILPSLFSFNISTNALHG--SIP-SSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF  220 (315)
Q Consensus       145 ~~~~~-~~~~~~L~~L~l~~n~~~~--~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  220 (315)
                      ++..+ +..+++|++|++++|.+++  ..+ ..+..+++|++|++++|.+.+..|...+..+++|+.|++++|.++. .|
T Consensus       191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip  269 (312)
T 1wwl_A          191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VP  269 (312)
T ss_dssp             HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CC
T ss_pred             HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hh
Confidence            23333 2448899999999999882  112 3346789999999999999866654555568899999999999985 45


Q ss_pred             ccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327          221 CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       221 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      ..+.  ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus       270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            5444  8999999999999865 55 8899999999999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.4e-28  Score=204.25  Aligned_cols=254  Identities=21%  Similarity=0.177  Sum_probs=154.8

Q ss_pred             cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327           30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET  109 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  109 (315)
                      ++..+++.+.+...+..+.. ..+  +|++|++ ++|.+.+..+..+..+++|++|++++|.+++..+   +..+++|++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~-~~~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~   84 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQ-SAW--NVKELDL-SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRT   84 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHT-TGG--GCSEEEC-TTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCE
T ss_pred             eeEeeccccchhhhHHHHhc-cCC--CCCEEEC-cCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCE
Confidence            33444555555443333322 122  6777777 6677766656667777777777777777664433   366777777


Q ss_pred             eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc
Q 039327          110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ  189 (315)
Q Consensus       110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  189 (315)
                      |++++|.+.+..     ..++|++|++++|.++ .++..   .+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus        85 L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           85 LDLNNNYVQELL-----VGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             EECCSSEEEEEE-----ECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             EECcCCcccccc-----CCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            777777665422     2367777777777665 33322   24567777777777775555566667777777777777


Q ss_pred             ccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCC
Q 039327          190 LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMP  269 (315)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~  269 (315)
                      +.+..+..+...+++|+.|++++|.+++...  ...+++|++|++++|.+++ ++..+..+++|++|++++|.+.     
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-----  227 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-----  227 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-----
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-----
Confidence            7643344443346677777777777665422  2246677777777777763 3444666777777777777666     


Q ss_pred             CCccccCCchhhcccCCCCEEecccCccC-CCCCCCcc-cccccee
Q 039327          270 KNHLEGPIPVEFCQLYSLHILDISDNNIS-GSLPSCFH-PLYIKKV  313 (315)
Q Consensus       270 ~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~-~~~L~~l  313 (315)
                            .+|..+..+++|+.|++++|.+. +.+|..+. ++.|+.+
T Consensus       228 ------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l  267 (317)
T 3o53_A          228 ------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (317)
T ss_dssp             ------EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred             ------chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence                  24555666677777777777776 44444444 5555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3.5e-27  Score=210.27  Aligned_cols=237  Identities=17%  Similarity=0.126  Sum_probs=155.7

Q ss_pred             CCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcc
Q 039327           26 NHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENN  104 (315)
Q Consensus        26 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  104 (315)
                      .+++|++|++++|.++.++ ..+..  ++  +|++|++ ++|.+.+..|  +..+++|++|++++|.+++. +     ..
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-----~~   98 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAP--FT--KLELLNL-SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L-----VG   98 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTT--CT--TCCEEEC-TTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E-----EC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhC--CC--CCCEEEe-eCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C-----CC
Confidence            3447777777777777743 34443  44  7777777 7777765444  67777777777777777632 2     23


Q ss_pred             cccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCcccc-CCCCCcEE
Q 039327          105 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG-NMNFLRIL  183 (315)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L  183 (315)
                      ++|++|++++|.+.+..+.   .+++|++|++++|.+++..|..+.. +++|+.|++++|.+++..|..+. .+++|+.|
T Consensus        99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence            6777777777777654443   3466777777777776433444443 67777777777777765565554 57777777


Q ss_pred             EccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcc
Q 039327          184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL  263 (315)
Q Consensus       184 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  263 (315)
                      ++++|.+. .++...  .+++|+.|++++|.+++..+. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus       175 ~Ls~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          175 NLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             ECTTSCCC-EEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred             ecCCCccc-cccccc--cCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence            77777776 333332  367777777777777764443 666777777777777777 3566666777777777777765


Q ss_pred             ccccCCCCccccCCchhhcccCCCCEEecc
Q 039327          264 SDITMPKNHLEGPIPVEFCQLYSLHILDIS  293 (315)
Q Consensus       264 ~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~  293 (315)
                      ..         +.+|.++..++.++.+++.
T Consensus       250 ~c---------~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          250 HC---------GTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CH---------HHHHHHHTTCHHHHHHHHH
T ss_pred             cC---------cchHHHHHhCCCCcEEecc
Confidence            41         1345566666666666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.4e-25  Score=199.80  Aligned_cols=254  Identities=21%  Similarity=0.271  Sum_probs=167.4

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      .++.|++++|.++ .+|. .+.  ++|++|++++|.++.+|..     .+  +|++|++ ++|.++ .+|.   .+++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~lp~~-----l~--~L~~L~L-s~N~l~-~lp~---~l~~L~  104 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLPAL-----PP--ELRTLEV-SGNQLT-SLPV---LPPGLL  104 (622)
T ss_dssp             CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSCCCCC-----CT--TCCEEEE-CSCCCS-CCCC---CCTTCC
T ss_pred             CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCCCCCc-----CC--CCCEEEc-CCCcCC-cCCC---CCCCCC
Confidence            4778888888887 6663 333  6888888888888877662     34  7888888 777776 3554   667888


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST  163 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  163 (315)
                      +|++++|.+++ +|.    .+++|++|++++|.+.. +|..   +++|++|++++|.++ .+|.    .+++|+.|++.+
T Consensus       105 ~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~  170 (622)
T 3g06_A          105 ELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYN  170 (622)
T ss_dssp             EEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCS
T ss_pred             EEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCC
Confidence            88888888763 443    45778888888887764 4432   367788888887776 4543    245677777777


Q ss_pred             CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327          164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI  243 (315)
Q Consensus       164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (315)
                      |.++ .+|   ..+++|+.|++++|.+. .+|.    ..++|+.|++++|.+.....    .+++|+.|++++|.+++ +
T Consensus       171 N~l~-~l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-l  236 (622)
T 3g06_A          171 NQLT-SLP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-L  236 (622)
T ss_dssp             SCCS-CCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-C
T ss_pred             CCCC-CCc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-C
Confidence            7776 344   34566777777777766 4443    24566666666666654321    23566666666666653 3


Q ss_pred             ccccccCCCCcEEEccCCcccc----------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327          244 PQSLSKCSSLEGLYLNNNSLSD----------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF  305 (315)
Q Consensus       244 ~~~~~~~~~L~~L~l~~n~i~~----------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~  305 (315)
                      |   ..+++|+.|++++|.+..          +++++|.+. .+|..+.++++|+.|++++|.+++..|..+
T Consensus       237 p---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          237 P---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             C---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             C---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence            3   334566666666665443          344455555 567778888888888888888876665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4.7e-24  Score=194.14  Aligned_cols=241  Identities=22%  Similarity=0.246  Sum_probs=199.5

Q ss_pred             cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      ..+++|+++++.++.+|..+..      +|++|++ ++|.++ .+|.   .+++|++|++++|.++ .+|.    .+++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~~------~L~~L~L-~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L  103 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLPA------HITTLVI-PDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGL  103 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCCT------TCSEEEE-CSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTC
T ss_pred             CCCcEEEecCCCcCccChhhCC------CCcEEEe-cCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCC
Confidence            4699999999999998887543      9999999 888888 4555   6789999999999987 5664    57999


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      ++|++++|.+.+ +|.   .+++|++|++++|.++ .+|..    +++|++|++++|.++ .+|.   ..++|+.|++++
T Consensus       104 ~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~  170 (622)
T 3g06_A          104 LELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYN  170 (622)
T ss_dssp             CEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             CEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCC
Confidence            999999999885 444   5789999999999998 67753    579999999999998 4554   347899999999


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD--  265 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--  265 (315)
                      |.+. .+|    ..+++|+.|++++|.+.+...    .+++|+.|++++|.++ .++.   .+++|+.|++++|.++.  
T Consensus       171 N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp  237 (622)
T 3g06_A          171 NQLT-SLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP  237 (622)
T ss_dssp             SCCS-CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC
T ss_pred             CCCC-CCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC
Confidence            9998 676    247899999999999987432    3578999999999998 4443   35789999999997765  


Q ss_pred             --------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          266 --------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       266 --------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                              +++++|.+. .+|.   .+++|+.|++++|.++ .+|..+. +++|+.|++
T Consensus       238 ~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          238 VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence                    678888887 4665   5688999999999999 7888888 999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.9e-24  Score=177.23  Aligned_cols=203  Identities=21%  Similarity=0.205  Sum_probs=154.3

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      ..++++++++.++.+|..+..      ++++|++ +++.+....+..+.++++|++|++++|.++ .++..++..+++|+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~------~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPA------DTKKLDL-QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLE   88 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCT------TCSEEEC-CSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCC
T ss_pred             CCCEEEccCCCCCccCCCCCC------CCCEEEC-cCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCC
Confidence            578899998888888876443      7899999 888888666667888888999999888887 55555557788888


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN  188 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  188 (315)
                      +|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            8888888887666667788888888888888887 555554444778888888888877555555777888888888888


Q ss_pred             cccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       189 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      .+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       168 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          168 QLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            777 5555545567778888888887777666667777778888887777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=5.7e-24  Score=175.50  Aligned_cols=202  Identities=22%  Similarity=0.239  Sum_probs=143.3

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      ..+++++ +++.++ .+|..+.  ++++.|++++|.++...+.. +..+++|++|++++|.+....+..+..+++|++|+
T Consensus        17 ~~~~l~~-~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDC-SSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKA-FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEEC-TTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTS-SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEc-cCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHH-hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            4667777 666666 3554333  56788888888776433333 47778888888888877755555567778888888


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus        92 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             CCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcC
Confidence            8888776 566555545777888888888777665666777788888888888777 55655555677788888888877


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      .+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            7766666777778888888888777555556677777888888777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.3e-24  Score=180.07  Aligned_cols=221  Identities=19%  Similarity=0.102  Sum_probs=127.0

Q ss_pred             eecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEe
Q 039327           33 LWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL  112 (315)
Q Consensus        33 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  112 (315)
                      ++..+..++.+|..+..      ++++|++ +++.+.+..+..+.++++|++|++++|.++...+.. +..+++|++|++
T Consensus        12 ~~c~~~~l~~ip~~l~~------~l~~L~l-s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L   83 (276)
T 2z62_A           12 YQCMELNFYKIPDNLPF------STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLIL   83 (276)
T ss_dssp             EECTTSCCSSCCSSSCT------TCCEEEC-TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEEC
T ss_pred             EEecCCCccccCCCCCC------CccEEEC-CCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-ccCCcCCCEEEC
Confidence            34444445555555332      5666666 666666555556666666666666666665433333 356666666666


Q ss_pred             ecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCC-CCccccCCCCCcEEEccCcccc
Q 039327          113 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGS-IPSSFGNMNFLRILDLSSNQLT  191 (315)
Q Consensus       113 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~  191 (315)
                      ++|.+.+..+..+..+++|++|++++|.+. .++......+++|++|++++|.++.. +|..+..+++|++|++++|.+.
T Consensus        84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           84 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            666666555556666666666666666665 33332222366666666666666542 3566666666666666666665


Q ss_pred             CcCchhhccCCCccc----EEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          192 GEIPERLAVGCVNLE----FLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       192 ~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                       .++...+..++.++    .+++++|.+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       163 -~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             -EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             -cCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence             33222222233333    666666666654443333 235666666666666444444566666666666666544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.8e-25  Score=199.28  Aligned_cols=229  Identities=21%  Similarity=0.180  Sum_probs=146.3

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      +|++|++ ++|.+.+..|..+..+++|++|++++|.+++..|   +..+++|++|++++|.+.+..     ..++|++|+
T Consensus        35 ~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDL-SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GCCEEEC-CSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CccEEEe-eCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            6777777 6677776666667777777777777777765444   366777777777777665422     226677777


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.+. .++..   .+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+..|..+...+++|+.|++++|.+
T Consensus       106 L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            7777766 33332   2456777777777777655666677777777777777776545555443466777777777777


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN  295 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  295 (315)
                      ++..+  ...+++|+.|++++|.+++. |..+..+++|+.|++++|.+.           .+|.++..+++|+.|++++|
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-----------~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-----------LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-----------EECTTCCCCTTCCEEECTTC
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-----------ccchhhccCCCCCEEEcCCC
Confidence            65422  22467777777777777643 334666777777777777665           24555666677777777777


Q ss_pred             ccC-CCCCCCcc-ccccc
Q 039327          296 NIS-GSLPSCFH-PLYIK  311 (315)
Q Consensus       296 ~~~-~~~~~~~~-~~~L~  311 (315)
                      .+. +.+|..+. ++.|+
T Consensus       248 ~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          248 GFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             CBCHHHHHHHHTTCHHHH
T ss_pred             CCcCcchHHHHHhCCCCc
Confidence            765 33333333 44443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=9.7e-24  Score=175.65  Aligned_cols=207  Identities=21%  Similarity=0.125  Sum_probs=170.5

Q ss_pred             CcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhh
Q 039327           21 LEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWL  100 (315)
Q Consensus        21 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  100 (315)
                      ...+.+++++++++++++.++.+|..+..      .++.|++ ++|.+.+..+..+..+++|+.|++++|.+++. +.. 
T Consensus         3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~------~l~~L~L-~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-   73 (290)
T 1p9a_G            3 ICEVSKVASHLEVNCDKRNLTALPPDLPK------DTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-   73 (290)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCT------TCCEEEC-TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-
T ss_pred             cccccccCCccEEECCCCCCCcCCCCCCC------CCCEEEc-CCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-
Confidence            34577888999999999999998887543      8999999 88999887788899999999999999998743 332 


Q ss_pred             hhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCC
Q 039327          101 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL  180 (315)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  180 (315)
                       +.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|
T Consensus        74 -~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           74 -GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             -SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             -CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence             67899999999999987 56777888999999999999988 6665544558899999999999886666667888999


Q ss_pred             cEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       181 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      +.|++++|.+. .+|...+..+++|+.|++++|.+... |..+...+.|+.+++.+|.+..
T Consensus       151 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred             CEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence            99999999988 77777776788999999999988854 5555667789999999888754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=9.7e-24  Score=174.71  Aligned_cols=222  Identities=21%  Similarity=0.151  Sum_probs=182.1

Q ss_pred             EEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEE
Q 039327            8 LYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVH   86 (315)
Q Consensus         8 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~   86 (315)
                      ++..+..+. .+|. .+.  +.|++|++++|.+++++. .+.+  ++  +|++|++ ++|.+.+..+..+.++++|++|+
T Consensus        12 ~~c~~~~l~-~ip~-~l~--~~l~~L~ls~n~l~~~~~~~~~~--l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~   82 (276)
T 2z62_A           12 YQCMELNFY-KIPD-NLP--FSTKNLDLSFNPLRHLGSYSFFS--FP--ELQVLDL-SRCEIQTIEDGAYQSLSHLSTLI   82 (276)
T ss_dssp             EECTTSCCS-SCCS-SSC--TTCCEEECTTCCCCEECTTTTTT--CT--TCSEEEC-TTCCCCEECTTTTTTCTTCCEEE
T ss_pred             EEecCCCcc-ccCC-CCC--CCccEEECCCCcccccCHhHhcc--cc--CCcEEEC-CCCcCCccCHHHccCCcCCCEEE
Confidence            444444444 4552 232  479999999999998665 4443  55  8999999 88999877777899999999999


Q ss_pred             ecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC-CCchhhhhcCCCceEEEeecCc
Q 039327           87 LSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG-HIPVEIGDILPSLFSFNISTNA  165 (315)
Q Consensus        87 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~  165 (315)
                      +++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+.. +++|++|++++|.
T Consensus        83 L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~  160 (276)
T 2z62_A           83 LTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNK  160 (276)
T ss_dssp             CTTCCCCEECTTT-TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSC
T ss_pred             CCCCccCccChhh-hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCC
Confidence            9999998665555 4899999999999999987777689999999999999999974 25777766 8999999999999


Q ss_pred             CCCCCCccccCCCCCc----EEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          166 LHGSIPSSFGNMNFLR----ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       166 ~~~~~~~~l~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      +++..+..+..+++++    .+++++|.+. .++...+. ..+|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            9866666777777776    8999999998 66666653 5589999999999998877788899999999999999875


Q ss_pred             c
Q 039327          242 E  242 (315)
Q Consensus       242 ~  242 (315)
                      .
T Consensus       239 ~  239 (276)
T 2z62_A          239 S  239 (276)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=3e-24  Score=177.29  Aligned_cols=176  Identities=22%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      +++.|++ +++.+..  ...+..+++|++|++++|.+++ ++ . +..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        42 ~L~~L~l-~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           42 SIDQIIA-NNSDIKS--VQGIQYLPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             TCCEEEC-TTSCCCC--CTTGGGCTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ceeeeee-CCCCccc--ccccccCCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4555555 4444432  1224445555555555554442 11 2 24445555555555554443333444445555555


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus       116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcC
Confidence            5555444 333332222444455555444444333333444444444444444444 23332222344444444444444


Q ss_pred             CCcccccccCCCCCCEEEcCCCcc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRF  239 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~  239 (315)
                      .+..+..+..+++|+.|++++|.+
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCHHHHhCCcCCCEEEccCCCc
Confidence            444333344444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=9.8e-24  Score=175.62  Aligned_cols=198  Identities=25%  Similarity=0.202  Sum_probs=166.9

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      +++++++ +++.++ .+|..+.  ++++.|++++|.+++..+.. +..+++|++|++++|.+.+..+  ...+++|++|+
T Consensus        11 ~l~~l~~-~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~   83 (290)
T 1p9a_G           11 SHLEVNC-DKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD   83 (290)
T ss_dssp             TCCEEEC-TTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred             CccEEEC-CCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence            7999999 888887 4555443  68999999999998665555 4889999999999999886333  37889999999


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.+. .+|..+.. +++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus        84 Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             CCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcC
Confidence            9999998 78876655 889999999999999666678899999999999999998 67777666789999999999999


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      .+..+..+..+++|+.|++++|.++ .+|..+...++|+.+++.+|.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            9887778888999999999999998 67777788889999999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=2.2e-23  Score=168.91  Aligned_cols=206  Identities=15%  Similarity=0.109  Sum_probs=133.8

Q ss_pred             cccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCce-ecccCChhhhhcccccceeEeec-CC
Q 039327           39 EIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK-MNGKFPNWLLENNAKLETLFLIN-DS  116 (315)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~  116 (315)
                      .++.+|. +..      ++++|++ +++.+++..+..+..+++|++|++++|. ++ .++...+..+++|++|++++ |.
T Consensus        22 ~l~~ip~-~~~------~l~~L~l-~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~   92 (239)
T 2xwt_C           22 DIQRIPS-LPP------STQTLKL-IETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRN   92 (239)
T ss_dssp             SCSSCCC-CCT------TCCEEEE-ESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETT
T ss_pred             CccccCC-CCC------cccEEEE-eCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCC
Confidence            3555665 433      6778888 7777776555567777778888887776 55 33332346777788888877 77


Q ss_pred             CcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce---EEEeecC-cCCCCCCccccCCCCCc-EEEccCcccc
Q 039327          117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF---SFNISTN-ALHGSIPSSFGNMNFLR-ILDLSSNQLT  191 (315)
Q Consensus       117 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~~~  191 (315)
                      +....+..|..+++|++|++++|.++ .+|. +.. +++|+   +|++++| .++...+..|..+++|+ ++++++|.+.
T Consensus        93 l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C           93 LTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             CCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             eeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-ccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            77655566777777777777777776 4655 332 55666   7777777 66644445567777777 7777777776


Q ss_pred             CcCchhhccCCCcccEEEccCCC-CCCcccccccCC-CCCCEEEcCCCccccccccccccCCCCcEEEccCC
Q 039327          192 GEIPERLAVGCVNLEFLALSNNN-LKGHMFCRNFNL-ANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN  261 (315)
Q Consensus       192 ~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  261 (315)
                       .+|...+.. ++|+.|++++|. +.+..+..+..+ ++|+.|++++|.+++ +|..  .+++|+.|++.++
T Consensus       170 -~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          170 -SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             -EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             -ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence             666665543 667777777773 665555566666 667777777666653 3322  4555666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.3e-23  Score=173.43  Aligned_cols=227  Identities=19%  Similarity=0.216  Sum_probs=179.3

Q ss_pred             cceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCe
Q 039327            5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLED   84 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~   84 (315)
                      +..+++.++.+...   .....+++|++|+++++.+..++. +..  ++  +|++|++ ++|.+.+  ...+..+++|++
T Consensus        21 l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~~~-l~~--l~--~L~~L~l-~~n~l~~--~~~l~~l~~L~~   89 (272)
T 3rfs_A           21 TIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQG-IQY--LP--NVRYLAL-GGNKLHD--ISALKELTNLTY   89 (272)
T ss_dssp             HHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCCCTT-GGG--CT--TCCEEEC-TTSCCCC--CGGGTTCTTCCE
T ss_pred             HHHHHhcCcccccc---cccccccceeeeeeCCCCcccccc-ccc--CC--CCcEEEC-CCCCCCC--chhhcCCCCCCE
Confidence            33445555555422   245678889999999998877543 333  55  8999999 8888875  246888999999


Q ss_pred             EEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC
Q 039327           85 VHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN  164 (315)
Q Consensus        85 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n  164 (315)
                      |++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|
T Consensus        90 L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A           90 LILTGNQLQSLPNGV-FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN  167 (272)
T ss_dssp             EECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccCccChhH-hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCC
Confidence            999999998544444 588999999999999998777777899999999999999998 666665545889999999999


Q ss_pred             cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccc
Q 039327          165 ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP  244 (315)
Q Consensus       165 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  244 (315)
                      .+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+       .++.++.+++..|.+++.+|
T Consensus       168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          168 QLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred             CcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence            998666667889999999999999998 5555555578999999999997764       35678899999999999988


Q ss_pred             cccccCCC
Q 039327          245 QSLSKCSS  252 (315)
Q Consensus       245 ~~~~~~~~  252 (315)
                      .+++.++.
T Consensus       240 ~~~~~~~~  247 (272)
T 3rfs_A          240 NSAGSVAP  247 (272)
T ss_dssp             CTTSCBCG
T ss_pred             CcccccCC
Confidence            88776643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=2.5e-25  Score=193.09  Aligned_cols=234  Identities=21%  Similarity=0.222  Sum_probs=102.7

Q ss_pred             ccCCCcccceeecccccccc-----cccccccCCCCccccEEEEeccCC---CCcccccccc-------ccCCCCCeEEe
Q 039327           23 PLFNHSRLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGY---GDGVTFPKFL-------YHQHDLEDVHL   87 (315)
Q Consensus        23 ~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~l-------~~~~~L~~L~l   87 (315)
                      .+..+++|++|++++|.+..     ++..+..  .+  +|++|++ +++   .+.+.+|..+       ..+++|++|++
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--~~--~L~~L~L-s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIAS--KK--DLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTT--CT--TCCEEEC-CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHh--CC--CccEEeC-cccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            44555666666666666554     1112222  22  5666666 443   2222333322       45556666666


Q ss_pred             cCceecc----cCChhhhhcccccceeEeecCCCcCcCcCC----CcCC---------CCccEEEcccCcCCC-CCc---
Q 039327           88 SHIKMNG----KFPNWLLENNAKLETLFLINDSIGGPFRLP----IHPH---------RRLRFLDVSNNNFQG-HIP---  146 (315)
Q Consensus        88 ~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~l~~~~~~~-~~~---  146 (315)
                      ++|.+++    .++..+ ..+++|++|++++|.+.+..+..    +..+         ++|++|++++|.++. .++   
T Consensus       102 s~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            6665554    233332 45555666666655554322211    2222         455555555555441 122   


Q ss_pred             hhhhhcCCCceEEEeecCcCCC-----CCCccccCCCCCcEEEccCcccc----CcCchhhccCCCcccEEEccCCCCCC
Q 039327          147 VEIGDILPSLFSFNISTNALHG-----SIPSSFGNMNFLRILDLSSNQLT----GEIPERLAVGCVNLEFLALSNNNLKG  217 (315)
Q Consensus       147 ~~~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~~~~  217 (315)
                      ..+. .+++|++|++++|.++.     ..+..+..+++|+.|++++|.+.    ..++..+. .+++|+.|++++|.+.+
T Consensus       181 ~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          181 KTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCH
T ss_pred             HHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCch
Confidence            1112 24455555555554441     12223444555555555555442    12333222 24445555555554443


Q ss_pred             c----cccccc--CCCCCCEEEcCCCcccc----cccccc-ccCCCCcEEEccCCccc
Q 039327          218 H----MFCRNF--NLANLRQLQLEDNRFIG----EIPQSL-SKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       218 ~----~~~~~~--~~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~i~  264 (315)
                      .    ++..+.  .+++|+.|++++|.+++    .++..+ ..+++|++|++++|.+.
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            2    122221  14444444444444443    133333 23444444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.8e-23  Score=176.01  Aligned_cols=226  Identities=20%  Similarity=0.218  Sum_probs=161.3

Q ss_pred             ccEEEEeccCCCCcccccc---ccccCCCCCeEEecCceecccCChhhh-hcccccceeEeecCCCcCcCc----CCCcC
Q 039327           56 QLQSLLLSSGYGDGVTFPK---FLYHQHDLEDVHLSHIKMNGKFPNWLL-ENNAKLETLFLINDSIGGPFR----LPIHP  127 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~l~~  127 (315)
                      .++.+.+ ....+......   ....+++|++|++++|.+.+..|..++ ..+++|++|++++|.+.+..+    ..+..
T Consensus        65 ~l~~l~l-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTV-GAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEE-CSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEE-eCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            6778888 66666532111   122346688888888888877776643 678888888888888876433    23456


Q ss_pred             CCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCC--C--CccccCCCCCcEEEccCccccCcCch---hhcc
Q 039327          128 HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGS--I--PSSFGNMNFLRILDLSSNQLTGEIPE---RLAV  200 (315)
Q Consensus       128 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~  200 (315)
                      +++|++|++++|.+. .++...+..+++|++|++++|.+.+.  .  +..+..+++|++|++++|.+. .++.   .++.
T Consensus       144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            888888888888887 44444443488888899888876531  1  223467888889999988886 4433   2334


Q ss_pred             CCCcccEEEccCCCCCCcccccccCC---CCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCC
Q 039327          201 GCVNLEFLALSNNNLKGHMFCRNFNL---ANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPI  277 (315)
Q Consensus       201 ~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~  277 (315)
                      .+++|+.|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++..           +
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-----------~  287 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-----------A  287 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-----------C
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-----------C
Confidence            57888999999998888766655554   68999999999888 5666553  688888888888773           2


Q ss_pred             chhhcccCCCCEEecccCccCC
Q 039327          278 PVEFCQLYSLHILDISDNNISG  299 (315)
Q Consensus       278 ~~~l~~~~~L~~L~l~~n~~~~  299 (315)
                      |. +..+++|+.|++++|++++
T Consensus       288 ~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ch-hhhCCCccEEECcCCCCCC
Confidence            32 5677889999999998874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.6e-24  Score=184.57  Aligned_cols=255  Identities=18%  Similarity=0.202  Sum_probs=179.4

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceeccc-CChhhhhccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGK-FPNWLLENNAKL  107 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L  107 (315)
                      .++.++++++.+..  ..+..+..+  +++.|++ +++.+.+..+. +..+++|++|++++|.+++. ++.. +..+++|
T Consensus        48 ~~~~l~l~~~~~~~--~~~~~~~~~--~l~~L~l-~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L  120 (336)
T 2ast_B           48 LWQTLDLTGKNLHP--DVTGRLLSQ--GVIAFRC-PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKL  120 (336)
T ss_dssp             TSSEEECTTCBCCH--HHHHHHHHT--TCSEEEC-TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTBCCC
T ss_pred             hheeeccccccCCH--HHHHhhhhc--cceEEEc-CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhCCCC
Confidence            47778888776653  222220013  7888888 77777765544 55788888899888888755 4544 4788889


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccC-cCCCC-CchhhhhcCCCceEEEeecC-cCCCC-CCccccCCC-CCcE
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN-NFQGH-IPVEIGDILPSLFSFNISTN-ALHGS-IPSSFGNMN-FLRI  182 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~  182 (315)
                      ++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+.. +++|++|++++| .++.. ++..+..++ +|++
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~  199 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  199 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence            99999888887767777788888999999888 56532 3333443 888999999988 77632 456677888 8999


Q ss_pred             EEccCcc--cc-CcCchhhccCCCcccEEEccCCC-CCCcccccccCCCCCCEEEcCCCc-cccccccccccCCCCcEEE
Q 039327          183 LDLSSNQ--LT-GEIPERLAVGCVNLEFLALSNNN-LKGHMFCRNFNLANLRQLQLEDNR-FIGEIPQSLSKCSSLEGLY  257 (315)
Q Consensus       183 L~l~~n~--~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~  257 (315)
                      |++++|.  +. +.++..+. .+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|+
T Consensus       200 L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  278 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  278 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             EEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence            9999884  43 23444333 58889999999988 666666677888999999999885 3333334577889999999


Q ss_pred             ccCCccccccCCCCccccCCchhhccc-CCCCEEecccCccCCCCCCCcc
Q 039327          258 LNNNSLSDITMPKNHLEGPIPVEFCQL-YSLHILDISDNNISGSLPSCFH  306 (315)
Q Consensus       258 l~~n~i~~l~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~  306 (315)
                      +++| +..             ..+..+ .++..|++++|.+++..|..+.
T Consensus       279 l~~~-i~~-------------~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          279 VFGI-VPD-------------GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             CTTS-SCT-------------TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             ccCc-cCH-------------HHHHHHHhhCcceEEecccCccccCCccc
Confidence            9887 331             122222 2355667888999888887765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=4.5e-25  Score=201.93  Aligned_cols=127  Identities=15%  Similarity=0.077  Sum_probs=61.5

Q ss_pred             CCCCCcEEEccCccccCcCchhhccCCCcccEEEcc----CCCCCCc-----ccccccCCCCCCEEEcCCCc--cccccc
Q 039327          176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS----NNNLKGH-----MFCRNFNLANLRQLQLEDNR--FIGEIP  244 (315)
Q Consensus       176 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~  244 (315)
                      .+++|++|++..+.+.+.....+...+++|+.|+++    .+.+++.     .+..+..+++|+.|+++.|.  +++...
T Consensus       376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence            355555555555555433333333335566666664    3334332     11223345566666664322  333322


Q ss_pred             cccc-cCCCCcEEEccCCcccc---------------ccCCCCccccC-CchhhcccCCCCEEecccCccCCCCC
Q 039327          245 QSLS-KCSSLEGLYLNNNSLSD---------------ITMPKNHLEGP-IPVEFCQLYSLHILDISDNNISGSLP  302 (315)
Q Consensus       245 ~~~~-~~~~L~~L~l~~n~i~~---------------l~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~  302 (315)
                      ..+. .+++|++|++++|.+++               +++++|.+++. ++..+..+++|+.|++++|++++...
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~  530 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ  530 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence            2222 35666666666654432               44445554432 23333456666666666666654433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=169.50  Aligned_cols=222  Identities=18%  Similarity=0.174  Sum_probs=172.5

Q ss_pred             CCCCCeEEecCceecccCChhh--hhcccccceeEeecCCCcCcCcCCC--cCCCCccEEEcccCcCCCCCc----hhhh
Q 039327           79 QHDLEDVHLSHIKMNGKFPNWL--LENNAKLETLFLINDSIGGPFRLPI--HPHRRLRFLDVSNNNFQGHIP----VEIG  150 (315)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~  150 (315)
                      ...++.+.+.++.++......+  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            4457888998887754211111  1345779999999999998888887  899999999999999986544    2333


Q ss_pred             hcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCc--Cch-hhccCCCcccEEEccCCCCCCcccc---ccc
Q 039327          151 DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE--IPE-RLAVGCVNLEFLALSNNNLKGHMFC---RNF  224 (315)
Q Consensus       151 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~-~~~~~~~~L~~L~l~~n~~~~~~~~---~~~  224 (315)
                       .+++|++|++++|.+++..+..+..+++|++|++++|.+.+.  ++. .....+++|++|++++|.++.....   .+.
T Consensus       143 -~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 -LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             -BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             -hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence             488999999999999977778899999999999999987632  222 2223588999999999999753221   346


Q ss_pred             CCCCCCEEEcCCCccccccccccccC---CCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC
Q 039327          225 NLANLRQLQLEDNRFIGEIPQSLSKC---SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL  301 (315)
Q Consensus       225 ~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~  301 (315)
                      .+++|++|++++|.+++..|..+..+   ++|++|++++|++..           +|..+.  ++|+.|++++|++++ +
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-----------lp~~~~--~~L~~L~Ls~N~l~~-~  287 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-----------VPKGLP--AKLRVLDLSSNRLNR-A  287 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-----------CCSCCC--SCCSCEECCSCCCCS-C
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-----------hhhhhc--CCCCEEECCCCcCCC-C
Confidence            78999999999999997777777766   699999999998873           455553  799999999999994 4


Q ss_pred             CCCccccccceecC
Q 039327          302 PSCFHPLYIKKVHL  315 (315)
Q Consensus       302 ~~~~~~~~L~~l~l  315 (315)
                      |..-.+++|+.|++
T Consensus       288 ~~~~~l~~L~~L~L  301 (310)
T 4glp_A          288 PQPDELPEVDNLTL  301 (310)
T ss_dssp             CCTTSCCCCSCEEC
T ss_pred             chhhhCCCccEEEC
Confidence            54333889998875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=1.3e-24  Score=198.88  Aligned_cols=110  Identities=17%  Similarity=0.079  Sum_probs=51.8

Q ss_pred             CCCCCcEEEccCcc--ccCcCchhhccCCCcccEEEccCCCCCCc-ccccccCCCCCCEEEcCCCccccc-cccccccCC
Q 039327          176 NMNFLRILDLSSNQ--LTGEIPERLAVGCVNLEFLALSNNNLKGH-MFCRNFNLANLRQLQLEDNRFIGE-IPQSLSKCS  251 (315)
Q Consensus       176 ~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~  251 (315)
                      .+++|+.|+++.|.  +.+.....+...+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. ++..+..++
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  513 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP  513 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence            34445555544321  22222223333355555555555555431 222334555666666666655433 222334455


Q ss_pred             CCcEEEccCCccccccCCCCccccCCchh-hcccCCCCEEecccC
Q 039327          252 SLEGLYLNNNSLSDITMPKNHLEGPIPVE-FCQLYSLHILDISDN  295 (315)
Q Consensus       252 ~L~~L~l~~n~i~~l~l~~~~l~~~~~~~-l~~~~~L~~L~l~~n  295 (315)
                      +|++|++++|+++          +..... ...+|.+....+..+
T Consensus       514 ~L~~L~ls~n~it----------~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          514 SLRYLWVQGYRAS----------MTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             SCCEEEEESCBCC----------TTCTTGGGGCCTTEEEEEECCC
T ss_pred             ccCeeECcCCcCC----------HHHHHHHHHhCCCcEEEEecCc
Confidence            6666666665544          232222 335676666655554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.2e-24  Score=187.11  Aligned_cols=262  Identities=23%  Similarity=0.273  Sum_probs=191.3

Q ss_pred             cceeecccccccccccccccCCCCccccEEEEeccCCCCccccc----cccccCCCCCeEEecCce---ecccCChhh--
Q 039327           30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFP----KFLYHQHDLEDVHLSHIK---MNGKFPNWL--  100 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~---~~~~~~~~~--  100 (315)
                      |+...+....+..++..+..  .+  +|++|++ ++|.+.+..+    ..+..+++|++|++++|.   +++.+|..+  
T Consensus        11 L~~~~l~~~~~~~l~~~l~~--~~--~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~   85 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLE--DD--SVKEIVL-SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL   85 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHH--CS--CCCEEEC-TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhc--CC--CccEEEC-CCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence            33334444444445555544  44  8999999 8888887644    446789999999999864   455566554  


Q ss_pred             ----hhcccccceeEeecCCCcC----cCcCCCcCCCCccEEEcccCcCCCCCchhhhhc---C---------CCceEEE
Q 039327          101 ----LENNAKLETLFLINDSIGG----PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI---L---------PSLFSFN  160 (315)
Q Consensus       101 ----~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~---------~~L~~L~  160 (315)
                          +..+++|++|++++|.+.+    .++..+..+++|++|++++|.+++..+..+...   +         ++|++|+
T Consensus        86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence                3678999999999999887    356678889999999999998863323333321   2         7999999


Q ss_pred             eecCcCC-CCCC---ccccCCCCCcEEEccCccccCc----CchhhccCCCcccEEEccCCCCC----CcccccccCCCC
Q 039327          161 ISTNALH-GSIP---SSFGNMNFLRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNNNLK----GHMFCRNFNLAN  228 (315)
Q Consensus       161 l~~n~~~-~~~~---~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~  228 (315)
                      +++|.++ ...+   ..+..+++|++|++++|.+...    +....+..+++|+.|++++|.++    ...+..+..+++
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence            9999987 3444   3567889999999999988722    22212336889999999999986    445667788999


Q ss_pred             CCEEEcCCCccccc----cccccc--cCCCCcEEEccCCccccccCCCCccccCCchhh-cccCCCCEEecccCccCCCC
Q 039327          229 LRQLQLEDNRFIGE----IPQSLS--KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF-CQLYSLHILDISDNNISGSL  301 (315)
Q Consensus       229 L~~L~l~~n~~~~~----~~~~~~--~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l-~~~~~L~~L~l~~n~~~~~~  301 (315)
                      |+.|++++|.+++.    ++..+.  .+++|++|++++|.+....+      ..+|..+ .++++|+.|++++|.+++..
T Consensus       246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~------~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV------RTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH------HHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH------HHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            99999999998865    455553  38999999999998774100      0256666 56899999999999998666


Q ss_pred             C
Q 039327          302 P  302 (315)
Q Consensus       302 ~  302 (315)
                      +
T Consensus       320 ~  320 (386)
T 2ca6_A          320 D  320 (386)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=4.2e-22  Score=161.33  Aligned_cols=197  Identities=17%  Similarity=0.181  Sum_probs=119.1

Q ss_pred             CCCCeEEecCceecccCChhhhhcccccceeEeecCC-CcCcCcCCCcCCCCccEEEccc-CcCCCCCchhhhhcCCCce
Q 039327           80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS-IGGPFRLPIHPHRRLRFLDVSN-NNFQGHIPVEIGDILPSLF  157 (315)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~  157 (315)
                      .++++|++++|.+++..+.. +..+++|++|++++|. +....+.+|..+++|++|++++ |.++ .++...+..+++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHA-FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTT-TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcceEECHHH-ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence            36777777777776433323 4667777777777775 6554445666777777777776 6665 45544444466777


Q ss_pred             EEEeecCcCCCCCCccccCCCCCc---EEEccCc-cccCcCchhhccCCCccc-EEEccCCCCCCcccccccCCCCCCEE
Q 039327          158 SFNISTNALHGSIPSSFGNMNFLR---ILDLSSN-QLTGEIPERLAVGCVNLE-FLALSNNNLKGHMFCRNFNLANLRQL  232 (315)
Q Consensus       158 ~L~l~~n~~~~~~~~~l~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L  232 (315)
                      +|++.+|.+++ +|. +..+++|+   +|++++| .+. .++...+..+++|+ .|++++|.+....+..+.. ++|++|
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L  184 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV  184 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred             EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence            77777776663 554 66666666   7777776 665 55554444566666 6777666666444334433 566666


Q ss_pred             EcCCCc-cccccccccccC-CCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC
Q 039327          233 QLEDNR-FIGEIPQSLSKC-SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN  295 (315)
Q Consensus       233 ~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  295 (315)
                      ++++|. +++..+..+..+ ++|+.|++++|.+..           +|..  .+++|+.|++.++
T Consensus       185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-----------l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-----------LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-----------CCCT--TCTTCSEEECTTC
T ss_pred             EcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-----------CChh--HhccCceeeccCc
Confidence            666663 654444555666 666666666666553           2222  4455666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=9.4e-22  Score=165.19  Aligned_cols=190  Identities=17%  Similarity=0.244  Sum_probs=140.8

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      +|++|++ +++.+.. ++ .+..+++|+.|++++|.+++. +.  +..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        42 ~L~~L~l-~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           42 GITTLSA-FGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             TCCEEEC-TTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CcCEEEe-eCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            7888888 7777764 34 577788888888888888743 33  47888888888888887752  3577788888888


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.++ .++. +. .+++|++|++++|.+++ .+. +..+++|++|++++|.+. .++.  +..+++|+.|++++|.+
T Consensus       114 l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          114 LTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCC
T ss_pred             CCCCCCC-Cchh-hc-CCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCcc
Confidence            8888887 4554 33 37888888888888874 333 777888888888888877 4444  34578888888888888


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      .+..+  +..+++|++|++++|.+++..  .+..+++|+.|++++|.+..
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            76543  667888888888888887543  36778888888888887764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=4.3e-24  Score=183.62  Aligned_cols=254  Identities=17%  Similarity=0.101  Sum_probs=185.4

Q ss_pred             eEEeecCcccccCCCcccCCCcccceeecccccccccc-----cccccCCCCccccEEEEeccCCCCccccccccccC--
Q 039327            7 ELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-----TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ--   79 (315)
Q Consensus         7 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~--   79 (315)
                      .++++.|.+.+.+| ..+...++|++|++++|.+++.+     ..+..  .+. +|++|++ ++|.+.+..+..+..+  
T Consensus         2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~-~L~~L~L-s~N~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPA-SVTSLNL-SGNSLGFKNSDELVQILA   76 (362)
T ss_dssp             EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT--CCT-TCCEEEC-CSSCGGGSCHHHHHHHHH
T ss_pred             ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHh--CCC-ceeEEEC-cCCCCCHHHHHHHHHHHh
Confidence            36788888887777 35555566999999999998844     33332  222 7999999 8899988767666664  


Q ss_pred             ---CCCCeEEecCceecccCChhh---hhcc-cccceeEeecCCCcCcCcCC----CcC-CCCccEEEcccCcCCCCCch
Q 039327           80 ---HDLEDVHLSHIKMNGKFPNWL---LENN-AKLETLFLINDSIGGPFRLP----IHP-HRRLRFLDVSNNNFQGHIPV  147 (315)
Q Consensus        80 ---~~L~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~~  147 (315)
                         ++|++|++++|.+++..+..+   +..+ ++|++|++++|.+.+..+..    +.. .++|++|++++|.+++..+.
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence               899999999999987666544   2334 89999999999987655433    333 36899999999998754433


Q ss_pred             hh----hhcCCCceEEEeecCcCCCCCCcc----ccCC-CCCcEEEccCccccCc----CchhhccCCCcccEEEccCCC
Q 039327          148 EI----GDILPSLFSFNISTNALHGSIPSS----FGNM-NFLRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNNN  214 (315)
Q Consensus       148 ~~----~~~~~~L~~L~l~~n~~~~~~~~~----l~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~  214 (315)
                      .+    .....+|++|++++|.++...+..    +..+ ++|++|++++|.+.+.    ++..+....++|+.|++++|.
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            33    331238999999999988555543    3445 5899999999998842    444554335689999999999


Q ss_pred             CCCccc----ccccCCCCCCEEEcCCCccccc-------cccccccCCCCcEEEccCCcccc
Q 039327          215 LKGHMF----CRNFNLANLRQLQLEDNRFIGE-------IPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       215 ~~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      +.+..+    ..+..+++|+.|++++|.+.+.       ++..+..+++|+.|++++|.+..
T Consensus       237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            887544    3456788999999999984432       33456677888899999888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=5.9e-24  Score=182.79  Aligned_cols=235  Identities=20%  Similarity=0.159  Sum_probs=98.5

Q ss_pred             cceEEeecCcccccCCC----cccCCCc-ccceeeccccccccc-ccccccCCCCc-cccEEEEeccCCCCccccccccc
Q 039327            5 IEELYLSNNHFQIPISL----EPLFNHS-RLKRLWAYNNEIKAE-ITESHSLTAPN-FQLQSLLLSSGYGDGVTFPKFLY   77 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~   77 (315)
                      |++|++++|.+. ..+.    +.+..++ +|++|++++|.++.. +..+..+.... .+|++|++ ++|.+++..+..+.
T Consensus        24 L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L-s~n~l~~~~~~~l~  101 (362)
T 3goz_A           24 VTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL-SGNFLSYKSSDELV  101 (362)
T ss_dssp             CCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC-CSSCGGGSCHHHHH
T ss_pred             ceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC-cCCcCChHHHHHHH
Confidence            555555555554 2221    2344444 555555555555441 22211100000 14555555 55555443333222


Q ss_pred             ----cC-CCCCeEEecCceecccCChhh---hhc-ccccceeEeecCCCcCcCc----CCCcCCC-CccEEEcccCcCCC
Q 039327           78 ----HQ-HDLEDVHLSHIKMNGKFPNWL---LEN-NAKLETLFLINDSIGGPFR----LPIHPHR-RLRFLDVSNNNFQG  143 (315)
Q Consensus        78 ----~~-~~L~~L~l~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~  143 (315)
                          .+ ++|++|++++|.+++..+..+   +.. .++|++|++++|.+.+..+    ..+..++ +|++|++++|.+++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence                22 455555555555544333222   111 2355555555555543221    1222332 55555555555543


Q ss_pred             CCchhhhh---cC-CCceEEEeecCcCCCC----CCccccC-CCCCcEEEccCccccCcCch---hhccCCCcccEEEcc
Q 039327          144 HIPVEIGD---IL-PSLFSFNISTNALHGS----IPSSFGN-MNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFLALS  211 (315)
Q Consensus       144 ~~~~~~~~---~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~  211 (315)
                      ..+..+..   .+ ++|++|++++|.++..    ++..+.. .++|++|++++|.+.+..+.   ..+..+++|+.|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            33222211   12 3555555555555421    2222333 23555555555555422211   112234455555555


Q ss_pred             CCCCCCc-------ccccccCCCCCCEEEcCCCcccc
Q 039327          212 NNNLKGH-------MFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       212 ~n~~~~~-------~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      +|.+.+.       .+..+..+++|+.+++++|.+.+
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            5542221       11233344455555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=2.8e-22  Score=171.55  Aligned_cols=239  Identities=17%  Similarity=0.089  Sum_probs=132.1

Q ss_pred             ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce-
Q 039327           31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET-  109 (315)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-  109 (315)
                      ++++.+++.++.+|..+..      ++++|++ ++|.++..-+.++.++++|++|++++|.+.+.++...|..++++++ 
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~------~l~~L~L-s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPR------NAIELRF-VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCT------TCSEEEE-ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCCccCcCcCC------CCCEEEc-cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            4566666666666665432      6666666 6666664334456666667777776666655555544556666554 


Q ss_pred             eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec-CcCCCCCCccccCCC-CCcEEEccC
Q 039327          110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMN-FLRILDLSS  187 (315)
Q Consensus       110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~-~L~~L~l~~  187 (315)
                      +.+.+|++....+.+|..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            444456666555566666667777777666665 34433222244556666654 334422233344433 466666776


Q ss_pred             ccccCcCchhhccCCCcccEEEccC-CCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-ccc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSN-NNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-LSD  265 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~  265 (315)
                      |.+. .++...+. ..+++.+++.+ |.++...+.++..+++|++|++++|.++...+..   +.+|+.|...++. ++ 
T Consensus       164 N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~-  237 (350)
T 4ay9_X          164 NGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLK-  237 (350)
T ss_dssp             SCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCC-
T ss_pred             cccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcC-
Confidence            6666 55555553 45566666653 4455554555666666777777776666322222   3344444443321 11 


Q ss_pred             ccCCCCccccCCchhhcccCCCCEEeccc
Q 039327          266 ITMPKNHLEGPIPVEFCQLYSLHILDISD  294 (315)
Q Consensus       266 l~l~~~~l~~~~~~~l~~~~~L~~L~l~~  294 (315)
                                .+| .+..+++|+.+++.+
T Consensus       238 ----------~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          238 ----------KLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             ----------CCC-CTTTCCSCCEEECSC
T ss_pred             ----------cCC-CchhCcChhhCcCCC
Confidence                      334 355566666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.4e-23  Score=178.76  Aligned_cols=247  Identities=18%  Similarity=0.183  Sum_probs=186.1

Q ss_pred             ccceEEeecCcccccCCCcccCCC--cccceeecccccccccccccccCCCCccccEEEEeccCCCCccc-cccccccCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNH--SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT-FPKFLYHQH   80 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~   80 (315)
                      .++.++++++.+..    ..+..+  ++++.|++++|.+.+.+..+..  .+  +|++|++ +++.+.+. ++..+..++
T Consensus        48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~--~~--~L~~L~L-~~~~l~~~~~~~~~~~~~  118 (336)
T 2ast_B           48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFS--PF--RVQHMDL-SNSVIEVSTLHGILSQCS  118 (336)
T ss_dssp             TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCSCCC--CB--CCCEEEC-TTCEECHHHHHHHHTTBC
T ss_pred             hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchhhcc--CC--CCCEEEc-cCCCcCHHHHHHHHhhCC
Confidence            37789999887762    345556  8899999999999886655443  45  9999999 88888765 777888999


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecC-CCcC-cCcCCCcCCCCccEEEcccC-cCCCC-CchhhhhcCC-C
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIND-SIGG-PFRLPIHPHRRLRFLDVSNN-NFQGH-IPVEIGDILP-S  155 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~-~  155 (315)
                      +|++|++++|.+++..+..+ +.+++|++|++++| .+++ ..+..+..+++|++|++++| .+++. ++..+.. ++ +
T Consensus       119 ~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l~~~  196 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSET  196 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-SCTT
T ss_pred             CCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-cccC
Confidence            99999999999887777775 77999999999999 5664 25556788999999999999 77743 3444544 88 9


Q ss_pred             ceEEEeecC--cCC-CCCCccccCCCCCcEEEccCcc-ccCcCchhhccCCCcccEEEccCCC-CCCcccccccCCCCCC
Q 039327          156 LFSFNISTN--ALH-GSIPSSFGNMNFLRILDLSSNQ-LTGEIPERLAVGCVNLEFLALSNNN-LKGHMFCRNFNLANLR  230 (315)
Q Consensus       156 L~~L~l~~n--~~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~  230 (315)
                      |++|++++|  .++ ..++..+..+++|++|++++|. +.+..+..+. .+++|+.|++++|. +.......+..+++|+
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            999999999  444 3456677889999999999998 6655565554 58999999999995 3333334577899999


Q ss_pred             EEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327          231 QLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       231 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      +|++++| +.......+.  ..++.|++++|.++.
T Consensus       276 ~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          276 TLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT  307 (336)
T ss_dssp             EEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred             EEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence            9999998 5433222222  124444566666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.7e-21  Score=158.83  Aligned_cols=178  Identities=19%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      +..++++++++.++.+|..+..      .++.|++ +++.+.+..+..+.++++|++|++++|.+++..+.. +..+++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~~------~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIPA------DTEKLDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTEL   85 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCCT------TCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTC
T ss_pred             CCCeEEecCCCCccccCCCCCC------CCCEEEc-cCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-hccCCcC
Confidence            3456677777777776665432      6777777 666666655556666666666666666666443333 3556666


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      ++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence            66666666665544445555556666666555555 44443333355555555555555533333444455555555555


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCC
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      |.+. .++...+..+++|+.|++++|.+
T Consensus       165 N~l~-~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          165 NQLQ-SVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             SCCS-CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CcCC-ccCHHHHhCCCCCCEEEeeCCce
Confidence            5444 33332222344444444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.3e-21  Score=157.19  Aligned_cols=179  Identities=22%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      ..+++++ +++.+. .+|..+.  +.++.|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        15 ~~~~l~~-~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDC-QGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEEC-TTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCeEEec-CCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            4556666 555555 3444333  46666666666666444443 35666666666666666655555566666666666


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus        90 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcC
Confidence            6666665 444444434666666666666666444444566666666666666665 44443333466666666666666


Q ss_pred             CCcccccccCCCCCCEEEcCCCcccc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      .+..+..+..+++|+.|++++|.+.+
T Consensus       168 ~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CccCHHHHhCCCCCCEEEeeCCceeC
Confidence            65555555566666666666666553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=3.3e-21  Score=161.81  Aligned_cols=195  Identities=18%  Similarity=0.191  Sum_probs=150.5

Q ss_pred             cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327           24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN  103 (315)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  103 (315)
                      ...+++|++|+++++.+..++ .+..  ++  +|++|++ ++|.+.+..+  +..+++|++|++++|.+++ ++ . +..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~--l~--~L~~L~L-~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~-~~~  105 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQY--LN--NLIGLEL-KDNQITDLAP--LKNLTKITELELSGNPLKN-VS-A-IAG  105 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGG--CT--TCCEEEC-CSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-G-GTT
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhc--cC--CCCEEEc-cCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-h-hcC
Confidence            456788888888888887765 3443  55  8889999 8888875433  7888889999999888874 33 3 478


Q ss_pred             ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEE
Q 039327          104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRIL  183 (315)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  183 (315)
                      +++|++|++++|.+.+. + .+..+++|++|++++|.++ .++. +. .+++|+.|++++|.++. .+. +..+++|+.|
T Consensus       106 l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTL  178 (308)
T ss_dssp             CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC-Chh-hcCCCCCCEE
Confidence            88899999999888753 3 3788889999999988887 5554 44 37889999999988884 443 7888899999


Q ss_pred             EccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       184 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      ++++|.+. .++.  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       179 ~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          179 KADDNKIS-DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             ECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             ECCCCccC-cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            99999887 4443  3358889999999998877553  6788899999999988874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=4e-24  Score=195.68  Aligned_cols=50  Identities=10%  Similarity=-0.047  Sum_probs=29.4

Q ss_pred             ccCCCCccccCCchhh-cccCCCCEEecccCccCCCCCC-Ccc-ccccceecC
Q 039327          266 ITMPKNHLEGPIPVEF-CQLYSLHILDISDNNISGSLPS-CFH-PLYIKKVHL  315 (315)
Q Consensus       266 l~l~~~~l~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~-~~~-~~~L~~l~l  315 (315)
                      +++++|.+++..+..+ .++++|+.|++++|.+++..+. ... +++|++|++
T Consensus       461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM  513 (594)
T ss_dssp             EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred             eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence            4445555544334344 5677888888888877544433 223 677777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.1e-20  Score=149.58  Aligned_cols=133  Identities=27%  Similarity=0.255  Sum_probs=62.4

Q ss_pred             cccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEE
Q 039327          105 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILD  184 (315)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  184 (315)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34455555555444333333444555555555555444 33333332344555555555554433333344455555555


Q ss_pred             ccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327          185 LSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF  239 (315)
Q Consensus       185 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (315)
                      +++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       107 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             cCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            5555544 33333333345555555555555444444444455555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=5.1e-20  Score=157.46  Aligned_cols=237  Identities=17%  Similarity=0.108  Sum_probs=171.6

Q ss_pred             EEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccE-EE
Q 039327           58 QSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRF-LD  135 (315)
Q Consensus        58 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~  135 (315)
                      ++++- ++++++ .+|..+  .+++++|++++|+++ .+|...|+.+++|++|++++|.+.+.++ .+|.+++++.+ +.
T Consensus        12 ~~v~C-~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLC-QESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEE-ESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEe-cCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            45666 666666 566654  367999999999998 5665556899999999999999866444 56888888776 45


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc-cccCcCchhhccCCC-cccEEEccCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN-QLTGEIPERLAVGCV-NLEFLALSNN  213 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~-~L~~L~l~~n  213 (315)
                      +..|.+. .++...+..+++|++|++.+|.+....+..+.....+..+++.++ .+. .++...+.... .++.|++++|
T Consensus        87 ~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           87 EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             EEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSS
T ss_pred             ccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccc
Confidence            5668887 666666566899999999999998555555666777888888664 555 66665554443 5889999999


Q ss_pred             CCCCcccccccCCCCCCEEEcCC-CccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEec
Q 039327          214 NLKGHMFCRNFNLANLRQLQLED-NRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDI  292 (315)
Q Consensus       214 ~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l  292 (315)
                      .++...+..+ ...+++++++.+ |.++...+.++..+++|++|++++|+|+.           +|.  ..+.+|+.|.+
T Consensus       165 ~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-----------lp~--~~~~~L~~L~~  230 (350)
T 4ay9_X          165 GIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-----------LPS--YGLENLKKLRA  230 (350)
T ss_dssp             CCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-----------CCS--SSCTTCCEEEC
T ss_pred             cccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-----------cCh--hhhccchHhhh
Confidence            9987655554 456789999975 56664444677889999999999999884           332  23456777776


Q ss_pred             ccCccCCCCCCCccccccceecC
Q 039327          293 SDNNISGSLPSCFHPLYIKKVHL  315 (315)
Q Consensus       293 ~~n~~~~~~~~~~~~~~L~~l~l  315 (315)
                      .++.--..+|..-.+++|+.+++
T Consensus       231 l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          231 RSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             TTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             ccCCCcCcCCCchhCcChhhCcC
Confidence            66543347775433888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.3e-19  Score=143.39  Aligned_cols=177  Identities=23%  Similarity=0.276  Sum_probs=142.6

Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      +.++.+++.+.. +|..+  .+++++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            456666666653 44433  568999999999998 67766555589999999999999966666688999999999999


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccccc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT  267 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~  267 (315)
                      |.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.   
T Consensus        86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---  161 (208)
T 2o6s_A           86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---  161 (208)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred             CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence            9998 677666667999999999999999888878889999999999999999766667888999999999998643   


Q ss_pred             CCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc
Q 039327          268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH  306 (315)
Q Consensus       268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  306 (315)
                                    +.+++++.|+++.|.+++.+|..+.
T Consensus       162 --------------~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          162 --------------CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             --------------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             --------------cCCCCHHHHHHHHHhCCceeeccCc
Confidence                          2455666777777777766666544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=2.7e-22  Score=183.57  Aligned_cols=189  Identities=15%  Similarity=0.030  Sum_probs=89.7

Q ss_pred             hcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec---------CcCCCCCC
Q 039327          102 ENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST---------NALHGSIP  171 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------n~~~~~~~  171 (315)
                      ..+++|++|++++|.+.+... ..+..+++|++|++++| +.+.....+...+++|++|++.+         +.++....
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence            356777777777776543221 22445667777777665 32111222222355666666633         12221100


Q ss_pred             ccc-cCCCCCcEEEccCccccCcCchhhccCCCcccEEEcc--C----C----------------------------CCC
Q 039327          172 SSF-GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS--N----N----------------------------NLK  216 (315)
Q Consensus       172 ~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n----------------------------~~~  216 (315)
                      ..+ ..+++|++|.+..+.+.+.....+...+++|+.|+++  +    +                            .++
T Consensus       365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~  444 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT  444 (594)
T ss_dssp             HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCccc
Confidence            111 2245555555444444432222222234455555554  2    2                            222


Q ss_pred             CcccccccC-CCCCCEEEcCCCcccccccccc-ccCCCCcEEEccCCccccccCCCCccccCCc-hhhcccCCCCEEecc
Q 039327          217 GHMFCRNFN-LANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLSDITMPKNHLEGPIP-VEFCQLYSLHILDIS  293 (315)
Q Consensus       217 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~-~~l~~~~~L~~L~l~  293 (315)
                      +.....+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+          ++... ..+..+++|+.|+++
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~----------~~~~~~~~~~~l~~L~~L~l~  514 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF----------GDKALLANASKLETMRSLWMS  514 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC----------CHHHHHHTGGGGGGSSEEEEE
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC----------cHHHHHHHHHhCCCCCEEeee
Confidence            221222221 4445555555555443322222 3455555555555544          32223 344568999999999


Q ss_pred             cCccCCCC
Q 039327          294 DNNISGSL  301 (315)
Q Consensus       294 ~n~~~~~~  301 (315)
                      +|.++...
T Consensus       515 ~~~~~~~~  522 (594)
T 2p1m_B          515 SCSVSFGA  522 (594)
T ss_dssp             SSCCBHHH
T ss_pred             CCCCCHHH
Confidence            99885443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.9e-19  Score=160.83  Aligned_cols=178  Identities=25%  Similarity=0.310  Sum_probs=117.7

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      +++.|++ +++.+.+ +|..+  .++|++|++++|.++ .+|    ..+++|++|++++|.+++ +|. +..  +|++|+
T Consensus        60 ~L~~L~L-s~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQL-NRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEEC-CSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEe-CCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            6777777 6777765 55544  267777777777776 555    236777777777777765 554 443  777777


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.++ .+|.    .+++|+.|++++|.+++ +|.   .+++|++|++++|.+. .+|.  +  .++|+.|++++|.+
T Consensus       127 Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~--l--~~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          127 VDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE--L--PESLEALDVSTNLL  192 (571)
T ss_dssp             CCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC--C--CTTCCEEECCSSCC
T ss_pred             CCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch--h--hCCCCEEECcCCCC
Confidence            7777776 4665    26677777777777773 554   4567777777777776 4655  2  16777777777777


Q ss_pred             CCcccccccCCCCC-------CEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327          216 KGHMFCRNFNLANL-------RQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       216 ~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      +... . +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+..
T Consensus       193 ~~lp-~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          193 ESLP-A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SSCC-C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             Cchh-h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            6433 2 322  55       77777777777 456666667777777777776553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=8.8e-19  Score=145.80  Aligned_cols=190  Identities=17%  Similarity=0.222  Sum_probs=137.8

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      ++..+.+ ....+.+..  .+..+++|+.|++++|.++. ++.  +..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        25 ~~~~~~l-~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~   96 (291)
T 1h6t_A           25 ETIKDNL-KKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF   96 (291)
T ss_dssp             HHHHHHT-TCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             HHHHHHh-cCCCccccc--chhhcCcccEEEccCCCccc-Chh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence            3444455 444444322  24567888899998888863 343  4778889999999988876443  78888899999


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.++ .++. +.. +++|++|++++|.++. + ..+..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+
T Consensus        97 l~~n~l~-~~~~-l~~-l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A           97 LDENKVK-DLSS-LKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DIT-V-LSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             CCSSCCC-CGGG-GTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCC
T ss_pred             CCCCcCC-CChh-hcc-CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cch-h-hccCCCCCEEEccCCcc
Confidence            9888887 4443 443 7888888888888874 3 35778888888888888887 442 2 33578888888888888


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      .+..+  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+..
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            77554  6778888888888888874 33 36778888888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=5.2e-19  Score=159.22  Aligned_cols=187  Identities=21%  Similarity=0.259  Sum_probs=146.4

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      +|++|++++|.++++|..+..      +|++|++ ++|.++ .+|   ..+++|++|++++|.+++ +|. + ..  +|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~------~L~~L~L-s~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPP------QITVLEI-TQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L-PA--SLK  123 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCT------TCSEEEC-CSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-CT--TCC
T ss_pred             CccEEEeCCCCCCccCHhHcC------CCCEEEC-cCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-hc--CCC
Confidence            788899998888887776432      7999999 888887 566   457889999999998885 666 3 33  899


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN  188 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  188 (315)
                      +|++++|.+.+ +|.   .+++|++|++++|.++ .+|.    .+++|++|++++|.+++ +|. +.  ++|+.|++++|
T Consensus       124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             EEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred             EEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence            99999998886 554   5788999999999887 5766    36789999999998884 666 55  88999999999


Q ss_pred             cccCcCchhhccCCCcc-------cEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccC
Q 039327          189 QLTGEIPERLAVGCVNL-------EFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKC  250 (315)
Q Consensus       189 ~~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  250 (315)
                      .+. .+|. +.   .+|       +.|++++|.++.. |..+..+++|+.|++++|.+++..|..+..+
T Consensus       191 ~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          191 LLE-SLPA-VP---VRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCS-SCCC-CC-----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CCC-chhh-HH---HhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            888 7776 32   266       9999999998864 5555668999999999999988877776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2.1e-18  Score=143.51  Aligned_cols=192  Identities=19%  Similarity=0.252  Sum_probs=151.6

Q ss_pred             cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      .++..+.+....+.+.... .  .++  ++++|++ +++.+... + .+..+++|++|++++|.+++..+   +..+++|
T Consensus        24 ~~~~~~~l~~~~~~~~~~~-~--~l~--~L~~L~l-~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L   92 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAVTQ-N--ELN--SIDQIIA-NNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNL   92 (291)
T ss_dssp             HHHHHHHTTCSCTTSEECH-H--HHH--TCCEEEC-TTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred             HHHHHHHhcCCCcccccch-h--hcC--cccEEEc-cCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc---cccCCCC
Confidence            3344555666655552211 1  133  8999999 88888743 3 48889999999999999985433   4899999


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      ++|++++|.+.+ + ..+..+++|++|++++|.+. .++ .+.. +++|+.|++++|.+++.  ..+..+++|+.|++++
T Consensus        93 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~  165 (291)
T 1h6t_A           93 GWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  165 (291)
T ss_dssp             CEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             CEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccC
Confidence            999999999876 3 34889999999999999998 553 4444 89999999999999854  5688999999999999


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE  242 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (315)
                      |.+. .++.  +..+++|+.|++++|.+++. + .+..+++|+.|++++|.++..
T Consensus       166 N~l~-~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          166 NQIS-DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             SCCC-CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred             Cccc-cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence            9998 4444  44699999999999999875 2 478899999999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=3.6e-18  Score=137.11  Aligned_cols=154  Identities=16%  Similarity=0.100  Sum_probs=117.8

Q ss_pred             cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327           30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET  109 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  109 (315)
                      -+.++++++.++.+|..+..      ++++|++ ++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~------~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPT------NAQILYL-HDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV   92 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCEeEccCCCcCccCCCCCC------CCCEEEc-CCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence            56788888888888876443      8888888 888888777777888888888888888886 445444577888888


Q ss_pred             eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc
Q 039327          110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ  189 (315)
Q Consensus       110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  189 (315)
                      |++++|.+.+..+..+..+++|++|++++|.+. .+|..+.. +++|+.|++++|.++...+..+..+++|+.|++++|.
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            888888887666666778888888888888887 77777655 7788888888888875555567777888888888877


Q ss_pred             ccCc
Q 039327          190 LTGE  193 (315)
Q Consensus       190 ~~~~  193 (315)
                      +...
T Consensus       171 ~~c~  174 (229)
T 3e6j_A          171 WDCE  174 (229)
T ss_dssp             BCTT
T ss_pred             ccCC
Confidence            7643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=5.2e-18  Score=136.15  Aligned_cols=152  Identities=23%  Similarity=0.225  Sum_probs=89.4

Q ss_pred             cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327          107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS  186 (315)
Q Consensus       107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  186 (315)
                      -+.++.+++.+. .+|..+  .++|++|++++|.+.+..|..+. .+++|++|++++|.++...+..|..+++|+.|+++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            445666665554 344333  25666677766666632233333 36666667766666664434445666666666666


Q ss_pred             CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +|.+. .++...+..+++|+.|++++|.+.. .|..+..+++|++|++++|.+++..+..+..+++|+.|++.+|.+.
T Consensus        97 ~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCC-ccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            66666 4554444456666666666666663 3445556666666666666666444455666666666666666544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=5.8e-18  Score=153.93  Aligned_cols=191  Identities=17%  Similarity=0.219  Sum_probs=145.6

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      .+..+.+ ....+.+..+  +..+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|+
T Consensus        22 ~l~~l~l-~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNL-KKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHT-TCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHhc-cCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            4445555 5555544332  567888999999998886 3443  4788999999999998886444  78889999999


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.+. .++ .+.. +++|+.|++++|.+.. + ..+..+++|+.|++++|.+. .+ .. +..+++|+.|++++|.+
T Consensus        94 Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~-l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A           94 LDENKIK-DLS-SLKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             CCSSCCC-CCT-TSTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GG-GGSCTTCSEEECCSSCC
T ss_pred             CcCCCCC-CCh-hhcc-CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccC-Cc-hh-hcccCCCCEEECcCCcC
Confidence            9999887 554 4444 8889999999998884 3 35788899999999999887 44 23 34688899999999988


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI  266 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l  266 (315)
                      .+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+...
T Consensus       166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            87655  77888999999999988753  3577888999999998887753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=3.3e-18  Score=136.39  Aligned_cols=154  Identities=23%  Similarity=0.223  Sum_probs=124.6

Q ss_pred             cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327          107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS  186 (315)
Q Consensus       107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  186 (315)
                      -++++++++.+.. +|..+  .+.+++|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3578888888874 56544  34578999999988743344444458899999999999886666678889999999999


Q ss_pred             CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus        90 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            99988 666665667889999999999998888888888999999999999998777888888999999999988765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=3.7e-18  Score=136.12  Aligned_cols=152  Identities=15%  Similarity=0.152  Sum_probs=101.4

Q ss_pred             ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327           31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL  110 (315)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  110 (315)
                      +.++++++.++.+|..+..      +++.|++ +++.+.+..+..+..+++|+.|++++|.+++..|.. +..+++|++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~~------~l~~L~l-~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L   85 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPE------TITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSL   85 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCT------TCCEEEC-CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEE
T ss_pred             CEEEcCCCCcCcCCCccCc------CCCEEEC-CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEE
Confidence            5677777777777776433      7788888 777777655566777777777777777776555555 3667777777


Q ss_pred             EeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccc
Q 039327          111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL  190 (315)
Q Consensus       111 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~  190 (315)
                      ++++|.+....+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            77777776544455666777777777777776 33333333366777777777776655555566666777777776665


Q ss_pred             c
Q 039327          191 T  191 (315)
Q Consensus       191 ~  191 (315)
                      .
T Consensus       165 ~  165 (220)
T 2v9t_B          165 I  165 (220)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.8e-18  Score=136.79  Aligned_cols=156  Identities=13%  Similarity=0.094  Sum_probs=105.1

Q ss_pred             cceeecccccccccccccccCCCCccccEEEEeccCCCCccccc-cccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFP-KFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      -++++++++.++.+|..+..      .+++|++ ++|.+.+..+ ..+..+++|+.|++++|.+++..+.. +..+++|+
T Consensus        13 ~~~l~~s~n~l~~iP~~~~~------~~~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~l~~L~   84 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIPQ------YTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVN   84 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCCT------TCSEEEC-CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-TTTCTTCC
T ss_pred             CCEeEeCCCCcccCccCCCC------CCCEEEc-CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-hCCCCCCC
Confidence            35778888877777776443      6678888 7777776533 34667777777777777776444434 46777777


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN  188 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  188 (315)
                      +|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..|..+++|+.|++++|
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            777777777766666677777777777777777633333333 3667777777777777555666777777777777777


Q ss_pred             cccCcC
Q 039327          189 QLTGEI  194 (315)
Q Consensus       189 ~~~~~~  194 (315)
                      .+....
T Consensus       164 ~l~c~c  169 (220)
T 2v70_A          164 PFNCNC  169 (220)
T ss_dssp             CEECSG
T ss_pred             CCcCCC
Confidence            665433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=2.7e-18  Score=134.60  Aligned_cols=154  Identities=16%  Similarity=0.122  Sum_probs=110.3

Q ss_pred             cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327           24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN  103 (315)
Q Consensus        24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  103 (315)
                      ...+++|++|++++|.++.+| .+..  ++  +|++|++ ++|.+..  +..+..+++|++|++++|.+++..+..+ +.
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~--l~--~L~~L~l-~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~  110 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEY--AH--NIKDLTI-NNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL-SG  110 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGG--CT--TCSEEEE-ESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC-TT
T ss_pred             hhhcCCccEEeccCCCccChH-HHhc--CC--CCCEEEc-cCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh-cC
Confidence            356777888888888777766 4443  55  7888888 6665542  3467778888888888888876556554 67


Q ss_pred             ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCc-CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcE
Q 039327          104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN-FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI  182 (315)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  182 (315)
                      +++|++|++++|.+.+..+..+..+++|++|++++|. +. .++ .+.. +++|++|++++|.++. .+ .+..+++|+.
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~-l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKT-LPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGG-CSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcC-CCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence            8888888888888876666777788888888888887 55 665 3443 7788888888888773 33 5777888888


Q ss_pred             EEccCcccc
Q 039327          183 LDLSSNQLT  191 (315)
Q Consensus       183 L~l~~n~~~  191 (315)
                      |++++|.+.
T Consensus       186 L~l~~N~i~  194 (197)
T 4ezg_A          186 LYAFSQTIG  194 (197)
T ss_dssp             EEECBC---
T ss_pred             EEeeCcccC
Confidence            888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=6.5e-18  Score=134.69  Aligned_cols=152  Identities=23%  Similarity=0.243  Sum_probs=82.2

Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS  162 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  162 (315)
                      +.++++++.++ .+|..+   .+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECC
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECC
Confidence            45566665555 445432   245666666666666544445666666666666666665222333333 5566666666


Q ss_pred             cCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       163 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      +|.++...+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66655333334455556666666666555 333333334555555555555555555555555555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=7.7e-18  Score=153.13  Aligned_cols=194  Identities=19%  Similarity=0.248  Sum_probs=157.2

Q ss_pred             CcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccc
Q 039327           27 HSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAK  106 (315)
Q Consensus        27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  106 (315)
                      +..+..+.++.+.+..+... .  .++  .|+.|++ +++.+.. ++ .+..+++|+.|++++|.+.+..+   +..+++
T Consensus        20 l~~l~~l~l~~~~i~~~~~~-~--~L~--~L~~L~l-~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~   88 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVTQ-N--ELN--SIDQIIA-NNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKN   88 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEECH-H--HHT--TCCCCBC-TTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTT
T ss_pred             HHHHHHHhccCCCcccccch-h--cCC--CCCEEEC-cCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh---hccCCC
Confidence            44566677777776663221 1  144  8999999 8888874 33 58899999999999999985444   489999


Q ss_pred             cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327          107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS  186 (315)
Q Consensus       107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  186 (315)
                      |++|++++|.+.+  +..+..+++|++|++++|.+. .++ .+.. +++|+.|++++|.++..  ..+..+++|+.|+++
T Consensus        89 L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           89 LGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             CCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred             CCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence            9999999999985  347899999999999999998 554 4444 89999999999999854  568999999999999


Q ss_pred             CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327          187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI  243 (315)
Q Consensus       187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (315)
                      +|.+.+..+   +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..
T Consensus       162 ~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          162 DNQISDIVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             SSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred             CCcCCCchh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence            999984444   44699999999999999875  45788999999999999988543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=2.1e-18  Score=147.98  Aligned_cols=132  Identities=26%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      +|++|++ ++|.+.+..+..+..+++|++|++++|.++...+. .+..+++|++|++++|.+....+..|..+++|++|+
T Consensus        65 ~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           65 NLHSLLL-SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             TCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCEEEC-CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            4444444 44444443334444444444444444444422221 124444444444444444443344444444444444


Q ss_pred             cccCcCCCCCchhhh---hcCCCceEEEeecCcCCCCCCccccCCCC--CcEEEccCccc
Q 039327          136 VSNNNFQGHIPVEIG---DILPSLFSFNISTNALHGSIPSSFGNMNF--LRILDLSSNQL  190 (315)
Q Consensus       136 l~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~~  190 (315)
                      +++|.++ .+|...+   ..+++|+.|++++|.++...+..+..++.  ++.|++++|.+
T Consensus       143 L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            4444444 3443332   12444444444444444222223333333  23444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=7e-18  Score=132.22  Aligned_cols=151  Identities=16%  Similarity=0.237  Sum_probs=73.9

Q ss_pred             CCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccE
Q 039327          128 HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEF  207 (315)
Q Consensus       128 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  207 (315)
                      +++|++|++++|.+. .+| .+.. +++|++|++++|.++ . +..+..+++|++|++++|.+.+..+..+. .+++|+.
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~  116 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTL  116 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCE
Confidence            344444444444444 333 2222 444444444444333 1 12344445555555555544432333322 3455555


Q ss_pred             EEccCCCCCCcccccccCCCCCCEEEcCCCc-cccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCC
Q 039327          208 LALSNNNLKGHMFCRNFNLANLRQLQLEDNR-FIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYS  286 (315)
Q Consensus       208 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~  286 (315)
                      |++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+..           ++ .+..+++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-----------~~-~l~~l~~  182 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-----------YR-GIEDFPK  182 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-----------CT-TGGGCSS
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-----------hH-HhccCCC
Confidence            5555555544444445555566666666665 33 333 45566666666666666552           22 4556666


Q ss_pred             CCEEecccCccC
Q 039327          287 LHILDISDNNIS  298 (315)
Q Consensus       287 L~~L~l~~n~~~  298 (315)
                      |+.|++++|++.
T Consensus       183 L~~L~l~~N~i~  194 (197)
T 4ezg_A          183 LNQLYAFSQTIG  194 (197)
T ss_dssp             CCEEEECBC---
T ss_pred             CCEEEeeCcccC
Confidence            777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.9e-18  Score=147.17  Aligned_cols=178  Identities=24%  Similarity=0.216  Sum_probs=127.6

Q ss_pred             cEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhh-cccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           57 LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLE-NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        57 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      -+.++. +++.+. .+|..+.  ..++.|++++|.+++..+.. +. .+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        20 ~~~l~c-~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~-~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSC-SKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEW-TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TTEEEC-CSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTS-SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEEe-CCCCcC-ccCccCC--CCCCEEECCCCCCCccChhh-hhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            456777 666666 3554433  45788888888887544443 34 778888888888888776667788888888888


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhc---cCCCcccEEEccC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLA---VGCVNLEFLALSN  212 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~  212 (315)
                      +++|.++ .++...+..+++|++|++++|.++...+..|..+++|+.|++++|.+. .+|...+   ..+++|+.|++++
T Consensus        95 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCS
T ss_pred             CCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCC
Confidence            8888887 555554445788888888888887666777888888888888888887 6666654   3477788888888


Q ss_pred             CCCCCcccccccCCCC--CCEEEcCCCcccc
Q 039327          213 NNLKGHMFCRNFNLAN--LRQLQLEDNRFIG  241 (315)
Q Consensus       213 n~~~~~~~~~~~~~~~--L~~L~l~~n~~~~  241 (315)
                      |.+....+..+..++.  ++.|++.+|.+..
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            8887766556666655  3678888877653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=1.8e-18  Score=141.72  Aligned_cols=168  Identities=18%  Similarity=0.197  Sum_probs=92.4

Q ss_pred             CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceE
Q 039327           79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFS  158 (315)
Q Consensus        79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  158 (315)
                      +.++..++++++.+++. + . +..+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +. .+++|++
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~-~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-S-QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-C-HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCE
T ss_pred             HHHHHHHHhcCCCcccc-c-c-hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCE
Confidence            34445555555555422 2 1 2556666666666666553 22 4556666666666666665 4444 33 2566666


Q ss_pred             EEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCc
Q 039327          159 FNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR  238 (315)
Q Consensus       159 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  238 (315)
                      |++++|.+++ +|.. .. ++|+.|++++|.+. .++.  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.
T Consensus        90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A           90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELR-DTDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCS-BSGG--GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSC
T ss_pred             EECCCCccCC-cCcc-cc-CcccEEEccCCccC-CChh--hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCc
Confidence            6666666653 3322 22 56666666666665 3332  22456666666666666553  144556666666666666


Q ss_pred             cccccccccccCCCCcEEEccCCccc
Q 039327          239 FIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       239 ~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +++.  ..+..+++|+.|++++|.+.
T Consensus       162 i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          162 ITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             Ccch--HHhccCCCCCEEeCCCCccc
Confidence            6543  44555666666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.4e-18  Score=147.21  Aligned_cols=282  Identities=16%  Similarity=0.057  Sum_probs=169.2

Q ss_pred             CccceEEeecCcccccCCCcccCC-Ccccceeecccccccc--cccccccCCCCccccEEEEeccCCCCcccccccccc-
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFN-HSRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYH-   78 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-   78 (315)
                      +.+++|.++++--...+  ..+.. +++|++|+|++|++..  .+..    .++  .++.+.. ..+.+   -..+|.+ 
T Consensus        25 ~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~----~~~--~~~~~~~-~~~~I---~~~aF~~~   92 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAG----TYP--NGKFYIY-MANFV---PAYAFSNV   92 (329)
T ss_dssp             HHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSS----SSG--GGCCEEE-CTTEE---CTTTTEEE
T ss_pred             CceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccc----ccc--ccccccc-ccccc---CHHHhccc
Confidence            45777888765221111  23433 6778888888888873  2222    133  2333444 33321   2234555 


Q ss_pred             -------CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcC---CCCCchh
Q 039327           79 -------QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF---QGHIPVE  148 (315)
Q Consensus        79 -------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~~~~~  148 (315)
                             +++|+.+++.+ .++ .++...|..|++|+++++.+|.+....+.+|..+.++..+.......   ...+...
T Consensus        93 ~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~  170 (329)
T 3sb4_A           93 VNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF  170 (329)
T ss_dssp             ETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred             ccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence                   88888888887 665 45555568888888888888877766677787777777666644211   0022222


Q ss_pred             hhhcCCCce-EEEeecCcCCCCCCccc----cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccc
Q 039327          149 IGDILPSLF-SFNISTNALHGSIPSSF----GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN  223 (315)
Q Consensus       149 ~~~~~~~L~-~L~l~~n~~~~~~~~~l----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  223 (315)
                      .+..+..|+ .+.+....   .++..+    ....+++.+.+.++-.. .-...+...+++|+.+++++|.+..+...+|
T Consensus       171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF  246 (329)
T 3sb4_A          171 AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTF  246 (329)
T ss_dssp             CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred             ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence            222355555 33333221   122111    12344555555443211 1111222236778888888877777777778


Q ss_pred             cCCCCCCEEEcCCCccccccccccccCCCCc-EEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCC
Q 039327          224 FNLANLRQLQLEDNRFIGEIPQSLSKCSSLE-GLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP  302 (315)
Q Consensus       224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  302 (315)
                      ..+++|+++++.+| ++...+.+|..+++|+ .+++.+ .+..|.          +.+|.+|++|+.+++++|.++...+
T Consensus       247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----------~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE----------FGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC----------TTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc----------hhhhhCCccCCEEEeCCCccCccch
Confidence            88888888888776 5555567777888888 888876 555433          5778888888888888888876666


Q ss_pred             CCcc-ccccceec
Q 039327          303 SCFH-PLYIKKVH  314 (315)
Q Consensus       303 ~~~~-~~~L~~l~  314 (315)
                      ..|. |++|+.++
T Consensus       315 ~aF~~~~~L~~ly  327 (329)
T 3sb4_A          315 ELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTCTTCCCCEEE
T ss_pred             hhhcCCcchhhhc
Confidence            6777 88888775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=1.9e-17  Score=140.26  Aligned_cols=194  Identities=13%  Similarity=0.095  Sum_probs=119.6

Q ss_pred             ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCc----CCCCCCccccCCCC
Q 039327          104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNA----LHGSIPSSFGNMNF  179 (315)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~----~~~~~~~~l~~~~~  179 (315)
                      +++|+++++.+ .+......+|..|++|+.+++.++.+. .++...+..+.++..+......    ........|..+..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            66677776666 555445556666677777777666655 4555444444444444433311    11122233444555


Q ss_pred             Cc-EEEccCccccCcCchhhcc---CCCcccEEEccCCCCCCcccccc-cCCCCCCEEEcCCCccccccccccccCCCCc
Q 039327          180 LR-ILDLSSNQLTGEIPERLAV---GCVNLEFLALSNNNLKGHMFCRN-FNLANLRQLQLEDNRFIGEIPQSLSKCSSLE  254 (315)
Q Consensus       180 L~-~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  254 (315)
                      |+ .+.+...   +.++...+.   ...+++.+.+.++-... ....+ ..+++|+.+++.+|.++...+.+|..+++|+
T Consensus       178 L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          178 LETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             cceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            54 3333322   122222221   23445556555542111 11111 2388999999999999877778899999999


Q ss_pred             EEEccCCccccccCCCCccccCCchhhcccCCCC-EEecccCccCCCCCCCcc-ccccceecC
Q 039327          255 GLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLH-ILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       255 ~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      .+++.+| +..|.          +.+|.+|++|+ .+++.+ .++...+..|. |++|+.+++
T Consensus       254 ~l~l~~n-i~~I~----------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          254 KIKLPHN-LKTIG----------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             EEECCTT-CCEEC----------TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             EEECCcc-cceeh----------HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            9999987 66544          67899999999 999999 77756678888 999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=1.3e-19  Score=163.70  Aligned_cols=105  Identities=30%  Similarity=0.366  Sum_probs=61.3

Q ss_pred             CceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEc
Q 039327          155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL  234 (315)
Q Consensus       155 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  234 (315)
                      .|+.|++++|.+++ +|. ++.+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++. | .+..+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALENV-D-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEEC
Confidence            35556666665552 443 555666666666666655 5555443 356666666666666552 3 4556666666666


Q ss_pred             CCCcccccc-ccccccCCCCcEEEccCCcccc
Q 039327          235 EDNRFIGEI-PQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       235 ~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      ++|.+++.. |..++.+++|+.|++++|.+..
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            666666444 5666666666666666666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3.8e-17  Score=133.87  Aligned_cols=149  Identities=17%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             cccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCC
Q 039327           76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPS  155 (315)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  155 (315)
                      +..+++|+.|++++|.++ .++ . +..+++|++|++++|.+.+..+  +..+++|++|++++|.++ .++....   ++
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~~---~~  107 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPS---AC  107 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCCC---SS
T ss_pred             hhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcccc---Cc
Confidence            334444444444444443 222 1 2344444444444444443222  444444444444444444 2332111   34


Q ss_pred             ceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327          156 LFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE  235 (315)
Q Consensus       156 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  235 (315)
                      |++|++++|.+++ .+ .+..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+.+.  ..+..+++|+.|+++
T Consensus       108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred             ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence            5555555554442 22 2445555555555555554 232 1 12345555555555555443  334455555555555


Q ss_pred             CCccc
Q 039327          236 DNRFI  240 (315)
Q Consensus       236 ~n~~~  240 (315)
                      +|.+.
T Consensus       181 ~N~~~  185 (263)
T 1xeu_A          181 GQKCV  185 (263)
T ss_dssp             EEEEE
T ss_pred             CCccc
Confidence            55544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=6.8e-19  Score=159.06  Aligned_cols=203  Identities=20%  Similarity=0.136  Sum_probs=145.5

Q ss_pred             ccCCCCCeEEecCceecccCChhhhhcccccceeEeecCC-------------CcCcCcCCCcCCCCccEEE-cccCcCC
Q 039327           77 YHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS-------------IGGPFRLPIHPHRRLRFLD-VSNNNFQ  142 (315)
Q Consensus        77 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~  142 (315)
                      ..+++|+.|++++|.++ .+|..+ +.+++|++|++++|.             ..+..|..+..+++|+.|+ ++.+.+ 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence            56778888888888886 677775 788888888876653             1222233333333444333 222211 


Q ss_pred             CCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327          143 GHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR  222 (315)
Q Consensus       143 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  222 (315)
                                 ..|..+.+.+|.++ .++.     ..|+.|++++|.+. .+|. + ..+++|+.|++++|.++ .+|..
T Consensus       423 -----------~~L~~l~l~~n~i~-~l~~-----~~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          423 -----------DDLRSKFLLENSVL-KMEY-----ADVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             -----------HHHHHHHHHHHHHH-HHHH-----TTCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGG
T ss_pred             -----------chhhhhhhhccccc-ccCc-----cCceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccchh
Confidence                       12222233344433 1111     25899999999998 6776 4 46999999999999998 45778


Q ss_pred             ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCC-chhhcccCCCCEEecccCccCCCC
Q 039327          223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPI-PVEFCQLYSLHILDISDNNISGSL  301 (315)
Q Consensus       223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~~~~~~  301 (315)
                      +..+++|+.|++++|.+++ +| .++.+++|+.|++++|.+..          .. |..++.+++|+.|++++|.+++.+
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~----------~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ----------SAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS----------SSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC----------CCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            9999999999999999995 56 78999999999999998874          32 788999999999999999999666


Q ss_pred             CCCc---c-ccccceecC
Q 039327          302 PSCF---H-PLYIKKVHL  315 (315)
Q Consensus       302 ~~~~---~-~~~L~~l~l  315 (315)
                      |...   . +++|+.|++
T Consensus       550 ~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          550 GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCTTHHHHHCTTCSEEEC
T ss_pred             cHHHHHHHHCcccCccCC
Confidence            5442   2 789998875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=9.9e-18  Score=155.97  Aligned_cols=196  Identities=17%  Similarity=0.193  Sum_probs=113.8

Q ss_pred             cccceeeccccccccccccccc-CCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHS-LTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAK  106 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  106 (315)
                      ++++.|+|..+.+...+..+.. +.+....+..+++ .++.+. ..++.+..++.|+.|++++|.+. .+|..+ ..+++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~-~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~-~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD-IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANI-FKYDF  248 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG-GGCCS
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccc-ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhh-cCCCC
Confidence            5678888888877765444221 0011112333333 333333 45677888999999999999987 777776 58899


Q ss_pred             cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327          107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS  186 (315)
Q Consensus       107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  186 (315)
                      |++|+|++|.+. .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..|+.+++|+.|+++
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            999999999998 67888999999999999999998 88888876 889999999999987 778889999999999999


Q ss_pred             CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCC
Q 039327          187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN  237 (315)
Q Consensus       187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  237 (315)
                      +|.+.+.+|..+.........+++++|.+.+..|.      .+..++++.|
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            99998766665542111223467788887765554      3455556555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=6.9e-15  Score=127.41  Aligned_cols=248  Identities=11%  Similarity=0.120  Sum_probs=138.7

Q ss_pred             cccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhh
Q 039327           22 EPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLL  101 (315)
Q Consensus        22 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  101 (315)
                      .+|.++ +|+.+.+..+ ++.+....+    ..++|+.+.+ .. .+......++.+|.+|+.++++++.++ .++...|
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF----~~~~L~~i~l-p~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF  200 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAF----FNSTVQEIVF-PS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF  200 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTT----TTCCCCEEEC-CT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhc----CCCCceEEEe-CC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE
Confidence            455554 5667666554 555444432    2236777777 43 444444556666777777777666665 3444333


Q ss_pred             hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327          102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR  181 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  181 (315)
                      . +++|+.+.+..+ +......+|..+++|+.+.+..+ ++ .++...+.. .+|+.+.+.. .++......|..+++|+
T Consensus       201 ~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~  274 (401)
T 4fdw_A          201 V-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELA  274 (401)
T ss_dssp             T-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCC
T ss_pred             e-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCC
Confidence            3 466777766643 44444556666777777776553 33 444444443 4666666643 34434455666667777


Q ss_pred             EEEccCcccc----CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEE
Q 039327          182 ILDLSSNQLT----GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLY  257 (315)
Q Consensus       182 ~L~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  257 (315)
                      .+.+.++...    ..++...|..|++|+.+.+.. .+......+|..+.+|+.+.+..+ ++.....+|..+ +|+.+.
T Consensus       275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~  351 (401)
T 4fdw_A          275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVK  351 (401)
T ss_dssp             EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred             EEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence            7766665432    124555555666677666663 355555566666666777666443 443445556666 666666


Q ss_pred             ccCCccccccCCCCccccCCchhhcccC-CCCEEecccCcc
Q 039327          258 LNNNSLSDITMPKNHLEGPIPVEFCQLY-SLHILDISDNNI  297 (315)
Q Consensus       258 l~~n~i~~l~l~~~~l~~~~~~~l~~~~-~L~~L~l~~n~~  297 (315)
                      +.+|.+..+.          ...|.+++ +++.|.+-.+.+
T Consensus       352 l~~n~~~~l~----------~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          352 VEGTTPPQVF----------EKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECCSSCCBCC----------CSSCCCSCTTCCEEEECGGGH
T ss_pred             EcCCCCcccc----------cccccCCCCCccEEEeCHHHH
Confidence            6666554322          33444443 455666555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=7.2e-16  Score=117.53  Aligned_cols=136  Identities=23%  Similarity=0.219  Sum_probs=83.0

Q ss_pred             CCceEEEeecCcCC-CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEE
Q 039327          154 PSLFSFNISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQL  232 (315)
Q Consensus       154 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  232 (315)
                      +++++|++++|.++ +.+|..+..+++|+.|++++|.+. .+  ..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            45666666666655 445555566666666666666665 23  222346666666666666665555555556677777


Q ss_pred             EcCCCcccccc-ccccccCCCCcEEEccCCccccccCCCCccccCCc---hhhcccCCCCEEecccCccCCCCCC
Q 039327          233 QLEDNRFIGEI-PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP---VEFCQLYSLHILDISDNNISGSLPS  303 (315)
Q Consensus       233 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~~  303 (315)
                      ++++|.+++.. +..+..+++|++|++++|.+..+.          +   ..+..+++|+.|++++|.+. .+|+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~----------~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN----------DYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST----------THHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH----------HHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            77777766432 255666777777777777666311          2   36777777888888877776 4443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=1.9e-15  Score=115.13  Aligned_cols=134  Identities=22%  Similarity=0.270  Sum_probs=93.5

Q ss_pred             CCCCCeEEecCceec-ccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327           79 QHDLEDVHLSHIKMN-GKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF  157 (315)
Q Consensus        79 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  157 (315)
                      .++|+.|++++|.++ +.+|.. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+.. +++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence            467778888887776 566665 36778888888888877654  66777888888888888877445555444 77888


Q ss_pred             EEEeecCcCCCCC-CccccCCCCCcEEEccCccccCcCch---hhccCCCcccEEEccCCCCCC
Q 039327          158 SFNISTNALHGSI-PSSFGNMNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFLALSNNNLKG  217 (315)
Q Consensus       158 ~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~  217 (315)
                      +|++++|.+++.. +..+..+++|+.|++++|.+. ..+.   ..+..+++|+.|++++|.+.+
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence            8888888777422 156777778888888888776 4443   334457777777777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=7.4e-15  Score=127.20  Aligned_cols=257  Identities=10%  Similarity=0.050  Sum_probs=181.0

Q ss_pred             cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      ..++++.+.+. ++.++...+    ..++|+.+.+ ..+ +......+|.++ +|+.+.+.. .++ .+....|..|++|
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF----~~~~L~~i~l-~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L  182 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAF----RNSQIAKVVL-NEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNL  182 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTT----TTCCCSEEEC-CTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTC
T ss_pred             CCccEEEECCc-cCEehHhhc----ccCCccEEEe-CCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccC
Confidence            45555655442 444444433    2347888888 443 554555566664 688888876 343 3444446888999


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      +.+++.+|.+......+|. +.+|+.+.+..+ +. .++...+..+++|+.+++..+ ++.....+|.. .+|+.+.+..
T Consensus       183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~  257 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN  257 (401)
T ss_dssp             CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET
T ss_pred             CeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC
Confidence            9999988887765555666 578999888754 55 666666766888999998875 44344556666 6789988854


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCC-----CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLK-----GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS  262 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~  262 (315)
                       .+. .++...|..|++|+.+++.++.+.     .....+|..|++|+.+.+.. .++.....++..|++|+.+.+..+ 
T Consensus       258 -~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          258 -GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-  333 (401)
T ss_dssp             -TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred             -Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence             455 677777778999999999887765     35667888999999999984 466566678888999999998654 


Q ss_pred             cccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-c-cccceec
Q 039327          263 LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-P-LYIKKVH  314 (315)
Q Consensus       263 i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~-~~L~~l~  314 (315)
                      +..++          ..+|.+| +|+.+++.+|.........|. + ..++.++
T Consensus       334 l~~I~----------~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          334 VTQIN----------FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             CCEEC----------TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred             ccEEc----------HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence            55433          6789999 999999999988755566666 5 3565554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=1.9e-15  Score=117.70  Aligned_cols=129  Identities=27%  Similarity=0.347  Sum_probs=111.2

Q ss_pred             ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCc-cccCCCCCcEEEccCccccCcCchhhccCCCcccEEE
Q 039327          131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLA  209 (315)
Q Consensus       131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  209 (315)
                      .++++++++.++ .+|..+.   .++++|++++|.+++..+. .+..+++|++|++++|.+.+..|.. +..+++|+.|+
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~   84 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQ   84 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEE
T ss_pred             CCEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEE
Confidence            378999999997 8887654   4899999999999855553 4889999999999999998444544 44699999999


Q ss_pred             ccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          210 LSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       210 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9999999988888899999999999999999888889999999999999999876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=6.6e-15  Score=114.66  Aligned_cols=131  Identities=23%  Similarity=0.294  Sum_probs=111.6

Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCch-hhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV-EIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS  186 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  186 (315)
                      ++++++++.+. .+|..+.  .++++|++++|.+. .++. ..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            78999999886 4666553  48999999999998 5554 334459999999999999998878899999999999999


Q ss_pred             CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327          187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI  243 (315)
Q Consensus       187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (315)
                      +|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus        87 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           87 ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            99998 555555557999999999999999988899999999999999999988653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=9.6e-15  Score=113.77  Aligned_cols=127  Identities=26%  Similarity=0.286  Sum_probs=69.5

Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      ++++++++.+. .+|..+  .+++++|++++|.++ .+|..+.. +++|++|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            44555555554 234332  245666666666665 55544433 55666666666666544444555666666666666


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      |.+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus        88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6655 344333334555666666666655544445555555666666555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.8e-15  Score=111.88  Aligned_cols=128  Identities=22%  Similarity=0.201  Sum_probs=80.9

Q ss_pred             CCCceEEEeecCcCC-CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327          153 LPSLFSFNISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ  231 (315)
Q Consensus       153 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  231 (315)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.+. .+  ..+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            346777777777776 556666677777777777777776 33  22334667777777777776655555555667777


Q ss_pred             EEcCCCccccc-cccccccCCCCcEEEccCCccccccCCCCccccCCc---hhhcccCCCCEEecc
Q 039327          232 LQLEDNRFIGE-IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP---VEFCQLYSLHILDIS  293 (315)
Q Consensus       232 L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~---~~l~~~~~L~~L~l~  293 (315)
                      |++++|.+++. .+..+..+++|++|++++|.+..+.          +   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----------~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN----------DYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST----------THHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH----------HHHHHHHHHCCCcccccCC
Confidence            77777776642 2355666666777777666665321          2   356666666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.6e-15  Score=112.00  Aligned_cols=109  Identities=26%  Similarity=0.356  Sum_probs=49.0

Q ss_pred             CCCcEEEccCcccc-CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEE
Q 039327          178 NFLRILDLSSNQLT-GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGL  256 (315)
Q Consensus       178 ~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  256 (315)
                      ++++.|++++|.+. +.+|..+ ..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34445555555444 3333322 2344455555555544443  334444455555555555443344444444455555


Q ss_pred             EccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327          257 YLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       257 ~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~  298 (315)
                      ++++|.+..+.         .+..++.+++|+.|++++|.++
T Consensus        94 ~ls~N~i~~~~---------~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           94 NLSGNKIKDLS---------TIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ECTTSCCCSHH---------HHGGGGGCTTCCEEECTTCGGG
T ss_pred             ECCCCcCCChH---------HHHHHhhCCCCCEEeCcCCccc
Confidence            55544444211         1134444455555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=6.1e-15  Score=114.88  Aligned_cols=127  Identities=20%  Similarity=0.187  Sum_probs=75.1

Q ss_pred             ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327           31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL  110 (315)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  110 (315)
                      ++++++++.++.+|..+..      ++++|++ ++|.+. .+|..+.++++|+.|++++|.+++..+.. |..+++|++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~~------~l~~L~L-~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPR------DVTELYL-DGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCT------TCCEEEC-CSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred             CEEEcCCCCCCcCCCCCCC------CCCEEEC-CCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEE
Confidence            5667777777766665332      6777777 666665 45566666666666666666666433333 3566666666


Q ss_pred             EeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327          111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       111 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  167 (315)
                      ++++|.+....+..|..+++|++|++++|.++ .++...+..+++|+.|++.+|.+.
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            66666666555555666666666666666655 444443333555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=2.5e-14  Score=109.87  Aligned_cols=127  Identities=21%  Similarity=0.303  Sum_probs=59.3

Q ss_pred             cEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEcc
Q 039327          132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS  211 (315)
Q Consensus       132 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  211 (315)
                      +.++++++.++ .+|..+   .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|+++
T Consensus        10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence            34444444443 344322   234455555555444333333444555555555555544 3333333344555555555


Q ss_pred             CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcc
Q 039327          212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL  263 (315)
Q Consensus       212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i  263 (315)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            5555544444444555555555555555433333344455555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=2.2e-16  Score=146.94  Aligned_cols=131  Identities=17%  Similarity=0.181  Sum_probs=74.5

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      .|+.|++ ++|.+. .+|..+..+++|++|++++|.++ .+|..+ +.+++|++|+|++|.+. .+|..+..+++|++|+
T Consensus       225 ~L~~L~L-s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          225 LWHALDL-SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCEEEC-TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCcEEEC-CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            5666666 555555 45555556666666666666665 555553 56666666666666665 4556666666666666


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCC-CcEEEccCccccCc
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF-LRILDLSSNQLTGE  193 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~  193 (315)
                      +++|.+. .+|..+.. +++|+.|++++|.+++..|..+..... ...+++++|.+.+.
T Consensus       300 L~~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             CCSSCCC-CCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             CCCCCCC-ccChhhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence            6666665 56655443 566666666666666555544432211 11244555555433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=9.7e-15  Score=112.22  Aligned_cols=129  Identities=18%  Similarity=0.168  Sum_probs=64.7

Q ss_pred             cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327           30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET  109 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  109 (315)
                      .+.++++++.++.+|..+..      ++++|++ +++.+.+..+..+..+++|++|++++|.+++ ++...+..+++|++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~------~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPS------SATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCCccCCCCCCC------CCcEEEe-CCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCE
Confidence            34556666665555544322      5666666 5555554444444555555555555555542 22222345555555


Q ss_pred             eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327          110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  167 (315)
                      |++++|.+.+..+..+..+++|++|++++|.++ .+|...+..+++|++|++.+|.+.
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence            555555555443444455555555555555554 344433333445555555555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.7e-14  Score=110.69  Aligned_cols=134  Identities=22%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327          125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN  204 (315)
Q Consensus       125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  204 (315)
                      +..+.+|++|++++|.++ .++. +....++|+.|++++|.+++.  ..+..+++|++|++++|.+. .++...+..+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~   89 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   89 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence            344566667777766666 4433 333344777777777776643  45666777777777777776 555444345667


Q ss_pred             ccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCcccccccc----ccccCCCCcEEEccCCccc
Q 039327          205 LEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIGEIPQ----SLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       205 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~i~  264 (315)
                      |+.|++++|.+..... ..+..+++|+.|++++|.++ ..+.    .+..+++|+.|++++|.+.
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            7777777777654322 25556677777777777766 3333    3566666777776666544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=4e-14  Score=108.67  Aligned_cols=129  Identities=17%  Similarity=0.229  Sum_probs=104.2

Q ss_pred             CCCceEEEeecCcCCCCCCccccCC-CCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327          153 LPSLFSFNISTNALHGSIPSSFGNM-NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ  231 (315)
Q Consensus       153 ~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  231 (315)
                      +.+|+.|++.+|.++ .++. +..+ ++|+.|++++|.+. .+ .. +..+++|+.|++++|.+.+..+..+..+++|++
T Consensus        18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KL-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EE-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCC-cc-cc-cccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            678999999999998 4554 4444 49999999999988 44 23 346889999999999998766666688999999


Q ss_pred             EEcCCCcccccccc--ccccCCCCcEEEccCCccccccCCCCccccCCch----hhcccCCCCEEecccCccC
Q 039327          232 LQLEDNRFIGEIPQ--SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPV----EFCQLYSLHILDISDNNIS  298 (315)
Q Consensus       232 L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~~~  298 (315)
                      |++++|.++ .++.  .+..+++|+.|++++|.+..           +|.    .+..+++|+.|++++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-----------~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-----------KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-----------STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-----------cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999986 4554  78889999999999998873           444    4888999999999998764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=4.3e-16  Score=122.08  Aligned_cols=110  Identities=23%  Similarity=0.285  Sum_probs=48.3

Q ss_pred             CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327          125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN  204 (315)
Q Consensus       125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  204 (315)
                      +..+++|++|++++|.++ .+| .+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+| .+. .+++
T Consensus        44 ~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~-~l~~  116 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIE-KLVN  116 (198)
T ss_dssp             HHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHH-HHHH
T ss_pred             HhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccc-cCCC
Confidence            344444444444444444 233 2222 444455555444444 33433344444555555554444 232 111 2444


Q ss_pred             ccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCcccc
Q 039327          205 LEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       205 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      |+.|++++|.+.+... ..+..+++|++|++++|.+.+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            4555555544443221 234445555555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.50  E-value=1.1e-12  Score=113.77  Aligned_cols=283  Identities=19%  Similarity=0.132  Sum_probs=147.3

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEecc-----------------
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSS-----------------   64 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------------   64 (315)
                      |.+|+++.+.++ ++ .+...+|.+|++|+++++..+ ++.+.....   ..+..|+.+.++.                 
T Consensus        70 c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF---~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           70 CRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTF---SGCYALKSILLPLMLKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             CTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTT---TTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred             CCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhh---cccccchhhcccCceeeecceeeecccccc
Confidence            567777777643 33 344456777777777777543 333322211   1111333333200                 


Q ss_pred             ---CCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcC
Q 039327           65 ---GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF  141 (315)
Q Consensus        65 ---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  141 (315)
                         ..........++.++.+|+.+.+.++..  .++...|..+++|+.+.+..+ +......++..+..|+.+.+..+..
T Consensus       144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~  220 (394)
T 4fs7_A          144 ITIPEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY  220 (394)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred             cccCccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence               0111111233456667777777754422  233344566667777666554 2222334455555555554433221


Q ss_pred             C-C-------------------CCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccC
Q 039327          142 Q-G-------------------HIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG  201 (315)
Q Consensus       142 ~-~-------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  201 (315)
                      . +                   .+....+..+..++.+.+..+... .....|..+..++.+.....    .++...|..
T Consensus       221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~  295 (394)
T 4fs7_A          221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYG  295 (394)
T ss_dssp             EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTT
T ss_pred             EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce----eeccccccc
Confidence            1 0                   111111222333333333332211 22223344444444443332    233344556


Q ss_pred             CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhh
Q 039327          202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF  281 (315)
Q Consensus       202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l  281 (315)
                      +.+|+.+.+..+ +..+...+|..+.+|+.+++..+ ++.....++.+|.+|+.+.+..+ +..+.          ..+|
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~----------~~aF  362 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG----------ANAF  362 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC----------TTTB
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh----------HHHh
Confidence            777777777654 44455667778888888888643 55445667778888888888655 44433          5678


Q ss_pred             cccCCCCEEecccCccCCCCCCCcc-cccccee
Q 039327          282 CQLYSLHILDISDNNISGSLPSCFH-PLYIKKV  313 (315)
Q Consensus       282 ~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l  313 (315)
                      .+|++|+.+++..+ +. .+...|. |++|+.+
T Consensus       363 ~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          363 QGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             hCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            89999999988765 22 3345666 8888765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=4.9e-16  Score=121.75  Aligned_cols=108  Identities=23%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327          102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR  181 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  181 (315)
                      ..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+++ +| .+..+++|+
T Consensus        45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~  118 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred             hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence            444455555555544443 23 4444455555555555544 44433332 3455555555555542 23 344455555


Q ss_pred             EEEccCccccCcCch-hhccCCCcccEEEccCCCCC
Q 039327          182 ILDLSSNQLTGEIPE-RLAVGCVNLEFLALSNNNLK  216 (315)
Q Consensus       182 ~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~~~  216 (315)
                      +|++++|.+. .++. ..+..+++|+.|++++|.+.
T Consensus       119 ~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          119 VLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             EEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccc
Confidence            5555555554 2222 12223555555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=6.5e-12  Score=108.88  Aligned_cols=263  Identities=12%  Similarity=0.056  Sum_probs=172.2

Q ss_pred             CCCccceEEeecCcccccCCCcccCCCcccceeeccccc------------ccc--ccccc---c-cCCCCccccEEEEe
Q 039327            1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNE------------IKA--EITES---H-SLTAPNFQLQSLLL   62 (315)
Q Consensus         1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------~~~--~~~~~---~-~~~~~~~~L~~L~l   62 (315)
                      +|++|+.+++.++ ++ .+...++.+++.|+.+.+..+-            ...  .|..+   . .+...+.+|+.+.+
T Consensus        92 ~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l  169 (394)
T 4fs7_A           92 NCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSL  169 (394)
T ss_dssp             TCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEec
Confidence            4788999999765 33 3444578888888887765431            110  11110   0 11223348899998


Q ss_pred             ccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCC---------------------CcCcC
Q 039327           63 SSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS---------------------IGGPF  121 (315)
Q Consensus        63 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~~~~~  121 (315)
                       ..+ +......++.++.+|+.+++..+ ++ .+....|..++.|+.+.+..+.                     +....
T Consensus       170 -~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~  245 (394)
T 4fs7_A          170 -PDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELG  245 (394)
T ss_dssp             -CTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEEC
T ss_pred             -CCc-cceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecc
Confidence             543 33344556778888888888665 22 2233334555555555443321                     11122


Q ss_pred             cCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccC
Q 039327          122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG  201 (315)
Q Consensus       122 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  201 (315)
                      ..++..+..++.+.+..+..  .+....+..+..++.+......+.   ...|..+.+|+.+.+..+ +. .++...|..
T Consensus       246 ~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~  318 (394)
T 4fs7_A          246 KSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFES  318 (394)
T ss_dssp             SSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTT
T ss_pred             cccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcC
Confidence            34577788888888866533  344445555888888887665433   345788899999999765 54 677777878


Q ss_pred             CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhh
Q 039327          202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF  281 (315)
Q Consensus       202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l  281 (315)
                      +.+|+.+++..+ ++.+...+|..|.+|+.+.+..+ ++.....++.+|++|+.+++..+ +.           .+..+|
T Consensus       319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-----------~~~~~F  384 (394)
T 4fs7_A          319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-----------QYRYDF  384 (394)
T ss_dssp             CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-----------GGGGGB
T ss_pred             CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-----------Ehhhee
Confidence            999999999754 66667788999999999999876 56566788999999999998754 33           234568


Q ss_pred             cccCCCCEE
Q 039327          282 CQLYSLHIL  290 (315)
Q Consensus       282 ~~~~~L~~L  290 (315)
                      ..|++|+.+
T Consensus       385 ~~c~~L~~I  393 (394)
T 4fs7_A          385 EDTTKFKWI  393 (394)
T ss_dssp             CTTCEEEEE
T ss_pred             cCCCCCcEE
Confidence            888887764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=6.6e-13  Score=101.12  Aligned_cols=106  Identities=14%  Similarity=0.106  Sum_probs=78.8

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      ..++++++++.++.+|..+..      ++++|++ ++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~~------~l~~L~L-~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIPT------TTQVLYL-YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             CCCEEEeCCCCcCccCccCCC------CCcEEEc-CCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCC
Confidence            356788888888887776433      7888888 888888766777778888888888888877 34444457778888


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCC
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  142 (315)
                      +|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            8888888877655556777778888888777776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1.2e-12  Score=100.11  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327           30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET  109 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  109 (315)
                      -+.++++++.++.+|..+..      ++++|++ ++|.+.+..|..+.++++|+.|++++|.+++ +|..++..+++|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~~------~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIPT------DKQRLWL-NNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCCccCCCcCC------CCcEEEe-CCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhE
Confidence            36778888888777776433      7888888 7777777667777778888888888887774 44444567777777


Q ss_pred             eEeecCCCcCcCcCCCcCCCCccEEEcccCcCC
Q 039327          110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus       110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  142 (315)
                      |++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             EECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            877777777554555777777777777777765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=2.5e-12  Score=97.95  Aligned_cols=107  Identities=25%  Similarity=0.271  Sum_probs=80.3

Q ss_pred             ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEc
Q 039327          131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL  210 (315)
Q Consensus       131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  210 (315)
                      .++++++++.++ .+|..+   .+++++|++++|.+++..|..|..+++|++|++++|.+. .++...+..+++|+.|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence            567777777776 676654   357788888888887666777778888888888888887 666666556788888888


Q ss_pred             cCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327          211 SNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE  242 (315)
Q Consensus       211 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (315)
                      ++|.+.+..+..+..+++|+.|++++|.+...
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            88888777666777788888888888877643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=4e-12  Score=97.13  Aligned_cols=105  Identities=24%  Similarity=0.271  Sum_probs=77.9

Q ss_pred             cEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEcc
Q 039327          132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS  211 (315)
Q Consensus       132 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  211 (315)
                      +.++++++.+. .+|..+.   ++|+.|++++|.+++..|..|..+++|++|++++|.+. .+|...+..+++|+.|+++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence            56777777775 6776543   57788888888877666777777888888888888877 5666665567788888888


Q ss_pred             CCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      +|.+.+..+..+..+++|++|++++|.+..
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            888877666667778888888888887763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=3.7e-14  Score=121.65  Aligned_cols=161  Identities=19%  Similarity=0.139  Sum_probs=82.9

Q ss_pred             ccccceeEeecCCCcCcCcCC----Cc-CCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccc----
Q 039327          104 NAKLETLFLINDSIGGPFRLP----IH-PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSF----  174 (315)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l----  174 (315)
                      .++|++|++++|.++......    +. ..++|++|++++|.+++.....+...+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            345666666666554322111    11 124566666666655432223333334566666666666552211122    


Q ss_pred             -cCCCCCcEEEccCccccCc----CchhhccCCCcccEEEccCCCCCCc----ccccccCCCCCCEEEcCCCccccc---
Q 039327          175 -GNMNFLRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNNNLKGH----MFCRNFNLANLRQLQLEDNRFIGE---  242 (315)
Q Consensus       175 -~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~---  242 (315)
                       ...++|++|++++|.+.+.    ++..+. ..++|++|++++|.+.+.    ++..+..+++|++|++++|.+++.   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             2345666666666665421    111112 355666677766666532    233445556677777777766542   


Q ss_pred             -cccccccCCCCcEEEccCCcccc
Q 039327          243 -IPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       243 -~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                       +...+...++|++|++++|.|.+
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCH
Confidence             22334455667777777766553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.31  E-value=2e-10  Score=99.51  Aligned_cols=280  Identities=11%  Similarity=0.148  Sum_probs=146.1

Q ss_pred             ccceEEeecCcccccCCCcccCCCcccceeeccccc---ccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327            4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNE---IKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH   80 (315)
Q Consensus         4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~   80 (315)
                      .|+.+.+.++ ++ .+...+|.+|++|+++.+..+.   ++.+....+   ..+..|+.+.+ .. .+......++..+.
T Consensus        65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF---~~c~~L~~i~~-~~-~~~~I~~~aF~~c~  137 (394)
T 4gt6_A           65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF---MFCSELTDIPI-LD-SVTEIDSEAFHHCE  137 (394)
T ss_dssp             CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT---TTCTTCCBCGG-GT-TCSEECTTTTTTCT
T ss_pred             cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhc---hhcccceeecc-CC-ccceehhhhhhhhc
Confidence            3667777544 32 3344567777777777776552   333333322   22235555555 22 23333344556666


Q ss_pred             CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327           81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN  160 (315)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  160 (315)
                      +|+.+.+.....  .+....|..+.+|+.+.+..+ +......+|.. .+|+.+.+.....  .+....+..+..+....
T Consensus       138 ~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~  211 (394)
T 4gt6_A          138 ELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECFALSTIT  211 (394)
T ss_dssp             TCCEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCTTCCEEE
T ss_pred             ccccccccceee--eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhhccccceec
Confidence            666666654321  223333455666666655443 22122223322 2344444432211  11111111122222222


Q ss_pred             eecC------------------------------------cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327          161 ISTN------------------------------------ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN  204 (315)
Q Consensus       161 l~~n------------------------------------~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  204 (315)
                      ....                                    .++.....+|..+..|+.+.+..+..  .+....|..++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~  289 (394)
T 4gt6_A          212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPA  289 (394)
T ss_dssp             ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTT
T ss_pred             ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc--eecCcccccccc
Confidence            1111                                    11112234566777788777765432  345555667788


Q ss_pred             ccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhccc
Q 039327          205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL  284 (315)
Q Consensus       205 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~  284 (315)
                      |+.+.+. +.+......+|..+.+|+.+.+..+ ++.....+|..|.+|+.+.+..+ +..|.          ..+|.+|
T Consensus       290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~----------~~aF~~C  356 (394)
T 4gt6_A          290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP----------ESAFSNC  356 (394)
T ss_dssp             CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC----------GGGGTTC
T ss_pred             cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh----------HhHhhCC
Confidence            8888875 3455555667788888888888654 44455677778888888888643 44333          5788889


Q ss_pred             CCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327          285 YSLHILDISDNNISGSLPSCFH-PLYIKKVH  314 (315)
Q Consensus       285 ~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~  314 (315)
                      ++|+.+++.++....   ..+. +..|+.+.
T Consensus       357 ~~L~~i~~~~~~~~~---~~~~~~~~L~~i~  384 (394)
T 4gt6_A          357 TALNNIEYSGSRSQW---NAISTDSGLQNLP  384 (394)
T ss_dssp             TTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred             CCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence            999999988875431   2233 66666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.5e-13  Score=117.96  Aligned_cols=134  Identities=18%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             ccEEEEeccCCCCcccccccccc-----CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCC-----
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYH-----QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPI-----  125 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----  125 (315)
                      .++.|++ ++|.+++.....+..     .++|+.|++++|.+++.....+...+++|++|++++|.+++.....+     
T Consensus        73 ~L~~L~L-s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           73 SLRQLNL-AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TCCEEEC-TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hCCEEEe-cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            6777777 666666543333322     25677777777766544333433445566677777666654322222     


Q ss_pred             cCCCCccEEEcccCcCCCC----CchhhhhcCCCceEEEeecCcCCC----CCCccccCCCCCcEEEccCcccc
Q 039327          126 HPHRRLRFLDVSNNNFQGH----IPVEIGDILPSLFSFNISTNALHG----SIPSSFGNMNFLRILDLSSNQLT  191 (315)
Q Consensus       126 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~  191 (315)
                      ...++|++|++++|.+++.    ++..+.. .++|++|++++|.++.    .++..+...++|++|++++|.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            2244566666666555421    1111121 4455555555555441    11223334444555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=7.2e-10  Score=96.00  Aligned_cols=267  Identities=14%  Similarity=0.166  Sum_probs=167.7

Q ss_pred             CCCccceEEeecCc---ccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccc
Q 039327            1 HLTSIEELYLSNNH---FQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLY   77 (315)
Q Consensus         1 ~l~~L~~l~l~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~   77 (315)
                      +|++|+.+.+.++.   ++ .+...+|.++..|+.+.+..+ ++.+.....   ..+.+|+.+.+ .. .+......++.
T Consensus        85 ~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF---~~c~~L~~i~l-p~-~~~~I~~~~F~  157 (394)
T 4gt6_A           85 NCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAF---HHCEELDTVTI-PE-GVTSVADGMFS  157 (394)
T ss_dssp             TCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTT---TTCTTCCEEEC-CT-TCCEECTTTTT
T ss_pred             CCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhh---hhhcccccccc-cc-eeeeeccccee
Confidence            47889999998763   43 455568899999999888654 444444332   33448899998 43 33434455677


Q ss_pred             cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCc-----------------
Q 039327           78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN-----------------  140 (315)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----------------  140 (315)
                      .+..|+.+.+.++- + .+....|. ..+|+.+.+..+- ......++..+..++........                 
T Consensus       158 ~c~~L~~i~~~~~~-~-~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (394)
T 4gt6_A          158 YCYSLHTVTLPDSV-T-AIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDY  233 (394)
T ss_dssp             TCTTCCEEECCTTC-C-EECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE
T ss_pred             ccccccccccccee-e-Eecccccc-ccceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccc
Confidence            88888888886542 1 22222232 3456666665432 11223344444444443322111                 


Q ss_pred             -------------------CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccC
Q 039327          141 -------------------FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG  201 (315)
Q Consensus       141 -------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  201 (315)
                                         +. .+....+..+..|+.+.+..+... .....|..++.|+.+.+.. .+. .++...|..
T Consensus       234 ~~~~~~~~~~~~~~~ip~~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~  309 (394)
T 4gt6_A          234 ALIRYPSQREDPAFKIPNGVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAG  309 (394)
T ss_dssp             EEEECCTTCCCSEEECCTTEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTT
T ss_pred             cccccccccccceEEcCCcce-EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecC
Confidence                               11 122333445778999988765433 4456788899999999964 455 677888888


Q ss_pred             CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhh
Q 039327          202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF  281 (315)
Q Consensus       202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l  281 (315)
                      |.+|+.+.+..+ ++.+...+|..|.+|+++.+..+ ++..-..+|.+|.+|+.+++.++...             ..++
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-------------~~~~  374 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-------------WNAI  374 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-------------HHTC
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-------------hhhh
Confidence            999999999864 56666778999999999999654 55455788899999999999887533             2356


Q ss_pred             cccCCCCEEecccCcc
Q 039327          282 CQLYSLHILDISDNNI  297 (315)
Q Consensus       282 ~~~~~L~~L~l~~n~~  297 (315)
                      ..+.+|+.+.+..+.+
T Consensus       375 ~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          375 STDSGLQNLPVAPGSI  390 (394)
T ss_dssp             BCCCCC----------
T ss_pred             hccCCCCEEEeCCCCE
Confidence            6777888888776544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.14  E-value=1.7e-08  Score=86.92  Aligned_cols=138  Identities=18%  Similarity=0.230  Sum_probs=86.9

Q ss_pred             CCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEE
Q 039327          153 LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQL  232 (315)
Q Consensus       153 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  232 (315)
                      +.+++.+.+..+ +.......+..+..|+.+.+..+ +. .+....|..+..++.+.+..+ +......++..+.+|+.+
T Consensus       216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             ccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            445555555443 22233345666777777777654 33 455556666777887777643 444455667778888888


Q ss_pred             EcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc
Q 039327          233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH  306 (315)
Q Consensus       233 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~  306 (315)
                      .+.++.++.....++.+|.+|+.+.+..+ ++.|.          ..+|.+|++|+.+.+..+ ++.....+|.
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~----------~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ----------VYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC----------TTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEH----------HHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            88777776555677778888888887643 44333          567888888888877554 4433344555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.10  E-value=1.2e-08  Score=87.74  Aligned_cols=130  Identities=14%  Similarity=0.178  Sum_probs=71.9

Q ss_pred             CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327          125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN  204 (315)
Q Consensus       125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  204 (315)
                      +..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++......|..+.+++.+.+..+ +. .++...|..+.+
T Consensus       213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~  287 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN  287 (379)
T ss_dssp             TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred             cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence            333444555554332 22 233333334566666666554 33233445666666776666543 33 455555556667


Q ss_pred             ccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccC
Q 039327          205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNN  260 (315)
Q Consensus       205 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  260 (315)
                      |+.+.+.++.+......+|..+.+|+.+.+..+ ++..-..++.+|.+|+.+.+..
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            777777666666555666666777777776533 3434445666666666666643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=5.9e-10  Score=94.85  Aligned_cols=105  Identities=18%  Similarity=0.132  Sum_probs=82.2

Q ss_pred             cEEEcccC-cCCCCCchhhhhcCCCceEEEeec-CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEE
Q 039327          132 RFLDVSNN-NFQGHIPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLA  209 (315)
Q Consensus       132 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  209 (315)
                      ..++.+++ .++ .+|. +.. +.+|++|+|++ |.+++..+..|..+++|+.|++++|.+. .++...+..+++|+.|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEe
Confidence            34677777 787 7887 554 77899999986 8888666677888999999999999888 45555555788999999


Q ss_pred             ccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327          210 LSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG  241 (315)
Q Consensus       210 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~  241 (315)
                      +++|.+.+..+..+..++ |+.|++.+|.+..
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999998877666666555 8999999888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=7.7e-10  Score=94.12  Aligned_cols=103  Identities=20%  Similarity=0.159  Sum_probs=86.5

Q ss_pred             EEEeecC-cCCCCCCccccCCCCCcEEEccC-ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327          158 SFNISTN-ALHGSIPSSFGNMNFLRILDLSS-NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE  235 (315)
Q Consensus       158 ~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  235 (315)
                      .+++.++ .++ .+|. +..+++|++|++++ |.+. .++...+..+++|+.|++++|.+.+..+..|..+++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4678887 787 6787 99999999999996 8888 6666556679999999999999999888899999999999999


Q ss_pred             CCccccccccccccCCCCcEEEccCCccc
Q 039327          236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +|.+++..+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999865555555555 999999998876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.99  E-value=1e-09  Score=93.46  Aligned_cols=102  Identities=13%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             ccEEEEeccCCCCcc-c-------cccccccCCCCCeEEecCceec---------ccCChhhhhcccccceeEeecCCCc
Q 039327           56 QLQSLLLSSGYGDGV-T-------FPKFLYHQHDLEDVHLSHIKMN---------GKFPNWLLENNAKLETLFLINDSIG  118 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~-~-------~~~~l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~  118 (315)
                      .++.|.+ ......+ .       +..+..++++|+.|.+.+....         +.+. .++..+|+|+.|.++++.-.
T Consensus       108 ~v~~L~l-g~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          108 SLKQITI-GXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GCSEEEE-CCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC
T ss_pred             hcceEEE-cccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc
Confidence            5677777 4333321 1       1233445678888877554221         0122 33466778888888776311


Q ss_pred             CcCcCCCcCCCCccEEEcccCcCCCCCchhhh-hcCCCceEEEee
Q 039327          119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIG-DILPSLFSFNIS  162 (315)
Q Consensus       119 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~  162 (315)
                       ..+. +. +++|++|++..+.++......+. ..+|+|+.|+|+
T Consensus       186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence             1222 32 66777777777665532222232 136777777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.95  E-value=2.2e-09  Score=91.32  Aligned_cols=159  Identities=18%  Similarity=0.154  Sum_probs=75.5

Q ss_pred             hcccccceeEeecCCCcC---------cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCc
Q 039327          102 ENNAKLETLFLINDSIGG---------PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS  172 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  172 (315)
                      ..+++|+.|.+.......         .+...+..+|+|+.|.++++.-. .++. + . .++|++|++..+.++.....
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHH
Confidence            456777777775532210         11222345566777776655211 2222 1 2 55666776666655421111


Q ss_pred             cc--cCCCCCcEEEccCc--cccCc-----Cchhhc-cCCCcccEEEccCCCCCCcccccc---cCCCCCCEEEcCCCcc
Q 039327          173 SF--GNMNFLRILDLSSN--QLTGE-----IPERLA-VGCVNLEFLALSNNNLKGHMFCRN---FNLANLRQLQLEDNRF  239 (315)
Q Consensus       173 ~l--~~~~~L~~L~l~~n--~~~~~-----~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~~  239 (315)
                      .+  ..+|+|+.|+++.+  ...+.     +...+. ..+++|+.|++.+|.+....+..+   ..+++|++|+++.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            22  24666666666421  11101     111111 135666666666666543221111   1355666666666666


Q ss_pred             cccc----ccccccCCCCcEEEccCCccc
Q 039327          240 IGEI----PQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       240 ~~~~----~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      ++..    +..+..+++|+.|++++|.|.
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            5432    222334566666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=8.3e-09  Score=79.40  Aligned_cols=115  Identities=14%  Similarity=0.103  Sum_probs=82.5

Q ss_pred             ccCCCcccceeecccc-cccc-----cccccccCCCCccccEEEEeccCCCCccc----cccccccCCCCCeEEecCcee
Q 039327           23 PLFNHSRLKRLWAYNN-EIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVT----FPKFLYHQHDLEDVHLSHIKM   92 (315)
Q Consensus        23 ~~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~   92 (315)
                      .+...+.|++|+|++| .+..     +...+..    +..|++|++ ++|.+.+.    +...+...++|++|++++|.+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~----~~~L~~L~L-s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT----NTYVKKFSI-VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT----CCSCCEEEC-TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh----CCCcCEEEC-cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            5567888999999998 8765     3333332    338999999 88888764    344555678899999999988


Q ss_pred             cccCChhh---hhcccccceeEe--ecCCCcCc----CcCCCcCCCCccEEEcccCcCC
Q 039327           93 NGKFPNWL---LENNAKLETLFL--INDSIGGP----FRLPIHPHRRLRFLDVSNNNFQ  142 (315)
Q Consensus        93 ~~~~~~~~---~~~~~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~  142 (315)
                      .+.....+   +...++|++|++  ++|.+.+.    +...+...++|++|++++|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            75432222   356678999999  78888753    2344566788999999988764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.60  E-value=9.5e-09  Score=79.05  Aligned_cols=112  Identities=14%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             ccccEEEEeccCC-CCccc----cccccccCCCCCeEEecCceecccCChhh---hhcccccceeEeecCCCcCc----C
Q 039327           54 NFQLQSLLLSSGY-GDGVT----FPKFLYHQHDLEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGGP----F  121 (315)
Q Consensus        54 ~~~L~~L~l~~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----~  121 (315)
                      +..|++|++ ++| .+.+.    +...+...++|++|++++|.+.+.....+   +...++|++|++++|.+.+.    +
T Consensus        35 ~~~L~~L~L-~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNL-NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEEC-TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEe-cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            338999999 888 88754    44566678999999999999875433222   35668999999999998763    3


Q ss_pred             cCCCcCCCCccEEEc--ccCcCCCCCc----hhhhhcCCCceEEEeecCcCC
Q 039327          122 RLPIHPHRRLRFLDV--SNNNFQGHIP----VEIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       122 ~~~l~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~  167 (315)
                      ..++...++|++|++  ++|.+.+...    ..+.. .++|++|++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~-n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh-CCCcCEEeccCCCCC
Confidence            556788889999999  8888874322    22222 578999999999775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=1.2e-07  Score=71.39  Aligned_cols=85  Identities=12%  Similarity=0.127  Sum_probs=65.5

Q ss_pred             ccccEEEEeccCCCCccccccccccCCCCCeEEecCce-ecccCChhhhhc----ccccceeEeecCC-CcCcCcCCCcC
Q 039327           54 NFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK-MNGKFPNWLLEN----NAKLETLFLINDS-IGGPFRLPIHP  127 (315)
Q Consensus        54 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~l~~  127 (315)
                      ...|+.|++ +++.+++..-..+..+++|++|++++|. +++.....+ ..    +++|++|++++|. +++.....+.+
T Consensus        60 ~~~L~~LDL-s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           60 KYKIQAIDA-TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CCCEEEEEE-ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             CceEeEEeC-cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            347999999 7777887777778889999999999985 666555554 33    3579999999875 66655556778


Q ss_pred             CCCccEEEcccCc
Q 039327          128 HRRLRFLDVSNNN  140 (315)
Q Consensus       128 ~~~L~~L~l~~~~  140 (315)
                      +++|++|++++|.
T Consensus       138 ~~~L~~L~L~~c~  150 (176)
T 3e4g_A          138 FRNLKYLFLSDLP  150 (176)
T ss_dssp             CTTCCEEEEESCT
T ss_pred             CCCCCEEECCCCC
Confidence            8889999998875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.30  E-value=3.1e-07  Score=69.04  Aligned_cols=83  Identities=12%  Similarity=0.030  Sum_probs=45.6

Q ss_pred             ccceeecccccccc-cccccccCCCCccccEEEEeccCCCCccccccccccC----CCCCeEEecCce-ecccCChhhhh
Q 039327           29 RLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ----HDLEDVHLSHIK-MNGKFPNWLLE  102 (315)
Q Consensus        29 ~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~  102 (315)
                      .|++|++++|.+++ -...+..  .+  +|++|+++.+..+++..-..++..    ++|++|++++|. +++.....+ .
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~--~~--~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEG--LQ--YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTT--CS--CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred             eEeEEeCcCCCccHHHHHHhcC--CC--CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence            56677777666554 1122222  33  677777733334555544445443    357777776664 555444443 5


Q ss_pred             cccccceeEeecCC
Q 039327          103 NNAKLETLFLINDS  116 (315)
Q Consensus       103 ~~~~L~~L~l~~~~  116 (315)
                      .+++|++|++++|.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            56777777777664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=1.4e-06  Score=70.49  Aligned_cols=62  Identities=37%  Similarity=0.397  Sum_probs=35.0

Q ss_pred             CCCcccEEEccCCCCCCc--ccccccCCCCCCEEEcCCCccccccccccccCC--CCcEEEccCCccc
Q 039327          201 GCVNLEFLALSNNNLKGH--MFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCS--SLEGLYLNNNSLS  264 (315)
Q Consensus       201 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~  264 (315)
                      .++.|+.|++++|.+.+.  .+..+..+++|+.|++++|.+.+.  ..+..+.  +|++|++.+|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence            356667777777766652  234444566666666666666543  2222232  5666666666544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=2.4e-06  Score=69.11  Aligned_cols=80  Identities=21%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             hcccccceeEeecCCCcC--cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCC--CceEEEeecCcCCCCCC------
Q 039327          102 ENNAKLETLFLINDSIGG--PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP--SLFSFNISTNALHGSIP------  171 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~------  171 (315)
                      ..+++|++|+|++|.+.+  .++..+..+++|+.|++++|.+.+ + ..+.. +.  +|++|++.+|.+++..|      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~-l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDK-IKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGG-GTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhh-cccCCcceEEccCCcCccccCcchhHH
Confidence            345556666666665554  222334455566666666665542 2 11111 22  56666666666554333      


Q ss_pred             -ccccCCCCCcEEE
Q 039327          172 -SSFGNMNFLRILD  184 (315)
Q Consensus       172 -~~l~~~~~L~~L~  184 (315)
                       ..+..+|+|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             1244556666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.68  E-value=7.2e-06  Score=62.81  Aligned_cols=110  Identities=12%  Similarity=0.147  Sum_probs=66.6

Q ss_pred             cccEEEEeccCC-CCccc----cccccccCCCCCeEEecCceecccCChhh---hhcccccceeEeecCCCcCc----Cc
Q 039327           55 FQLQSLLLSSGY-GDGVT----FPKFLYHQHDLEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGGP----FR  122 (315)
Q Consensus        55 ~~L~~L~l~~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----~~  122 (315)
                      ..|++|++ +++ .+.+.    +.++++.-..|+.|++++|.+.+.....+   +..-+.|++|+|+.|.+.+.    +.
T Consensus        41 ~~L~~L~L-~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           41 TDLKEVNI-NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             SSCCEEEC-TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCccEEEC-CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            37888888 653 66543    44556666778888888887765322222   24557788888888877652    23


Q ss_pred             CCCcCCCCccEEEcccCc---CCCC----CchhhhhcCCCceEEEeecCcC
Q 039327          123 LPIHPHRRLRFLDVSNNN---FQGH----IPVEIGDILPSLFSFNISTNAL  166 (315)
Q Consensus       123 ~~l~~~~~L~~L~l~~~~---~~~~----~~~~~~~~~~~L~~L~l~~n~~  166 (315)
                      .++...+.|++|+++++.   +...    +...+.. -+.|++|++..+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCCc
Confidence            456666778888887542   2211    1122222 45788888876543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=1.1e-05  Score=61.71  Aligned_cols=114  Identities=11%  Similarity=0.080  Sum_probs=77.9

Q ss_pred             ccCCCcccceeecccc-cccc-----cccccccCCCCccccEEEEeccCCCCccccc----cccccCCCCCeEEecCcee
Q 039327           23 PLFNHSRLKRLWAYNN-EIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVTFP----KFLYHQHDLEDVHLSHIKM   92 (315)
Q Consensus        23 ~~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~   92 (315)
                      .+.+-+.|++|+|+++ ++..     +...+    -.++.|+.|++ ++|.+.+...    +.+..-+.|++|++++|.+
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL----~~N~~L~~L~L-~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAA----CNSKHIEKFSL-ANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHH----TTCSCCCEEEC-TTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHH----hhCCCcCEEEc-cCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            3455678999999885 7764     33333    33558999999 8888887644    4445678899999999998


Q ss_pred             cccCChhh---hhcccccceeEeecC---CCcC----cCcCCCcCCCCccEEEcccCcC
Q 039327           93 NGKFPNWL---LENNAKLETLFLIND---SIGG----PFRLPIHPHRRLRFLDVSNNNF  141 (315)
Q Consensus        93 ~~~~~~~~---~~~~~~L~~L~l~~~---~~~~----~~~~~l~~~~~L~~L~l~~~~~  141 (315)
                      .+.....+   +..-+.|++|+++++   .+..    .+..++..-+.|+.|+++.+..
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            76443333   244467999999865   3332    2334566678899999876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.82  E-value=0.0015  Score=46.46  Aligned_cols=57  Identities=16%  Similarity=0.046  Sum_probs=45.1

Q ss_pred             ceeeccccccc--ccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecc
Q 039327           31 KRLWAYNNEIK--AEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNG   94 (315)
Q Consensus        31 ~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   94 (315)
                      ..++.++++++  .+|..+..      ++++|+| ++|.++..-+..+..+++|+.|++.+|.+.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~------~l~~L~L-s~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPV------DTTELVL-TGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCT------TCSEEEC-TTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCCc------CCCEEEC-CCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            46788888887  78877544      7899999 8888886666677888889999999888754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.24  E-value=0.011  Score=42.05  Aligned_cols=36  Identities=28%  Similarity=0.197  Sum_probs=17.8

Q ss_pred             cccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327          204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF  239 (315)
Q Consensus       204 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (315)
                      +++.|++++|.++...+..|..+++|+.|+|.+|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            344555555555444444444455555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 1e-13
 Identities = 55/325 (16%), Positives = 98/325 (30%), Gaps = 43/325 (13%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
           +L ++ ++  SNN       + PL N ++L  +   NN+I      ++        L + 
Sbjct: 64  YLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
            ++                       +S +            N            ++   
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHG---SIPSSFGNM 177
                          ++N         +I DI P     N+   +L+G       +  ++
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 240

Query: 178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG-------------------- 217
             L  LDL++NQ++   P     G   L  L L  N +                      
Sbjct: 241 TNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 218 HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPI 277
                  NL NL  L L  N      P  +S  + L+ L+  NN +SD++          
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS---------- 345

Query: 278 PVEFCQLYSLHILDISDNNISGSLP 302
                 L +++ L    N IS   P
Sbjct: 346 --SLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 35/179 (19%), Positives = 56/179 (31%), Gaps = 32/179 (17%)

Query: 103 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS 162
               L+ L L  + +     L    +  L  LD++NN      P+     L  L    + 
Sbjct: 217 ILTNLDELSLNGNQLKDIGTLASLTN--LTDLDLANNQISNLAPLSG---LTKLTELKLG 271

Query: 163 TNALHGSIP--------------------SSFGNMNFLRILDLSSNQLTGEIPERLAVGC 202
            N +    P                    S   N+  L  L L  N ++   P       
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS---SL 328

Query: 203 VNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261
             L+ L  +NN +       N  L N+  L    N+     P  L+  + +  L LN+ 
Sbjct: 329 TKLQRLFFANNKVSDVSSLAN--LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 5e-09
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 24/213 (11%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            LT++E L  +NN       + PL   + L  L    N++K   T +         L +L
Sbjct: 195 KLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTLAS--------LTNL 243

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
                  + ++    L     L ++ L   +++   P   L          L  +     
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL-----TNLELNENQLE 298

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
              PI   + L +L +  NN     PV     L  L     + N +  S  SS  N+  +
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKV--SDVSSLANLTNI 353

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNN 213
             L    NQ++   P         +  L L++ 
Sbjct: 354 NWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 16/188 (8%)

Query: 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181
           ++P         LD+ NN        +  + L +L +  +  N +    P +F  +  L 
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
            L LS NQL  E+PE++      L         ++  +F    N   + +L     +  G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSG 140

Query: 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL 301
               +      L  + + + +++ I                   SL  L +  N I+   
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTI-------------PQGLPPSLTELHLDGNKITKVD 187

Query: 302 PSCFHPLY 309
            +    L 
Sbjct: 188 AASLKGLN 195

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 49/237 (20%), Positives = 81/237 (34%), Gaps = 20/237 (8%)

Query: 73  PKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLR 132
                +  +L  + L + K++   P        KLE L+L  + +     LP    + L+
Sbjct: 48  DGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKE---LPEKMPKTLQ 103

Query: 133 FLDVSNNNFQGHIPVEIGDI-LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT 191
            L V  N            +    +     +     G    +F  M  L  + ++   +T
Sbjct: 104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 192 GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCS 251
             IP+ L     +L  L L  N +          L NL +L L  N        SL+   
Sbjct: 164 -TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 252 SLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPL 308
            L  L+LNNN L             +P        + ++ + +NNIS    + F P 
Sbjct: 220 HLRELHLNNNKLV-----------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 53/296 (17%), Positives = 93/296 (31%), Gaps = 27/296 (9%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLL 62
                L L NN     I      N   L  L   NN+I      + +   P  +L+ L L
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYL 86

Query: 63  SSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR 122
           S      +        Q      +         F      N   +  L        G   
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL---NQMIVVELGTNPLKSSGIEN 143

Query: 123 LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182
                 ++L ++ +++ N    IP     + PSL   ++  N +     +S   +N L  
Sbjct: 144 GAFQGMKKLSYIRIADTNIT-TIP---QGLPPSLTELHLDGNKITKVDAASLKGLNNLAK 199

Query: 183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG- 241
           L LS N ++            +L  L L+NN L   +     +   ++ + L +N     
Sbjct: 200 LGLSFNSISAVDNG-SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 242 -----EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDI 292
                  P   +K +S  G+ L +N +    +         P  F  +Y    + +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ--------PSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           LR++  S   L  ++P+ L     +   L L NN +         NL NL  L L +N+ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
               P + +    LE LYL+ N L ++          + V   ++  +     +  N   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 300 SLPSCFHPLYI 310
            +    +PL  
Sbjct: 128 VVELGTNPLKS 138

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 12/217 (5%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L  +E LYLS N     +   P      L+ L  + NEI        +       ++  
Sbjct: 77  PLVKLERLYLSKNQ----LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-- 130

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
           L ++                 L  + ++   +    P  L  +   L  L L  + I   
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKV 186

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
               +     L  L +S N+             P L   +++ N L   +P    +  ++
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 244

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG 217
           +++ L +N ++            N +  + S  +L  
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 6e-09
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 154 PSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNN 213
            +L   ++  N ++G++P     + FL  L++S N L GEIP+         +  A +NN
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

Query: 214 NL 215
             
Sbjct: 302 KC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 13/236 (5%)

Query: 82  LEDVHLSHIKMNGKFP-NWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN 140
           + ++ LS + +   +P    L N   L  L++   +       P              + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 141 FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAV 200
                  +    + +L + + S NAL G++P S  ++  L  +    N+++G IP+    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 201 GCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG------------EIPQSLS 248
                  + +S N L G +     NL         +                 +I  + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 249 KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC 304
             +   G    + +L+ + +  N + G +P    QL  LH L++S NN+ G +P  
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 43/264 (16%), Positives = 69/264 (26%), Gaps = 9/264 (3%)

Query: 1   HLTSIEELYLSNNHFQIPISLEP-LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQS 59
               +  L LS  +   P  +   L N   L  L+                         
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
           +   +        P FL     L  +  S+  ++G  P  +      +   F  N   G 
Sbjct: 108 I---THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
                    +    + +S N   G IP    ++  +    + +      S+         
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
              L  +S                NL  L L NN + G +      L  L  L +  N  
Sbjct: 225 KIHLAKNSLAFDLGKVGL----SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSL 263
            GEIP         +     NN  
Sbjct: 281 CGEIP-QGGNLQRFDVSAYANNKC 303

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 18/240 (7%)

Query: 73  PKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLR 132
                   +L  + L    +               +     N  +        H   RL 
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTG 192
            L +     Q  +   +   L +L    +  NAL      +F ++  L  L L  N+++ 
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 193 EIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSS 252
            +PER   G  +L+ L L  N +         +L  L  L L  N       ++L+   +
Sbjct: 168 -VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 253 LEGLYLNNNS-------------LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
           L+ L LN+N              L       + +   +P     L    +  ++ N++ G
Sbjct: 227 LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 11/192 (5%)

Query: 123 LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182
           +P+      + + +  N     +P        +L    + +N L     ++F  +  L  
Sbjct: 26  VPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242
           LDLS N     +      G   L  L L    L+         LA L+ L L+DN     
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302
              +     +L  L+L+ N +S +              F  L+SL  L +  N ++   P
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSV----------PERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 303 SCFHPLYIKKVH 314
             F  L      
Sbjct: 195 HAFRDLGRLMTL 206

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 15/223 (6%)

Query: 107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNAL 166
            + +FL  + I           R L  L + +N            +             L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 167 HGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNL 226
               P++F  +  L  L L       E+   L  G   L++L L +N L+        +L
Sbjct: 94  RSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 227 ANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT--------------MPKNH 272
            NL  L L  NR      ++     SL+ L L+ N ++ +               +  N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 273 LEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL 315
           L          L +L  L ++DN       +     +++K   
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG 255

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 172 SSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ 231
           + + N    R LDL   ++   I   L       + +  S+N +          L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 232 LQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNH 272
           L + +NR              L  L L NNSL ++      
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 17/120 (14%)

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
           R+L L+   LT  +   L    + +  L LS+N L+         LA LR L++      
Sbjct: 1   RVLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDN 53

Query: 241 GEI-PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
                  ++    L+ L L NN L                       L +L++  N++  
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQS---------AAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM 219
           +++   L  ++      +  +  LDLS N+L    P   A+ C+ +       ++     
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 220 FCRNFNLANLRQLQLEDNRFIG-EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP 278
                NL  L++L L +NR       Q L  C  L  L L  NSL      +  L   +P
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 4/105 (3%)

Query: 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188
             +  LD+S+N  +   P      L  L     S N           N+  L+ L L +N
Sbjct: 20  LLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDN--ALENVDGVANLPRLQELLLCNN 75

Query: 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQ 233
           +L      +  V C  L  L L  N+L      +      L  + 
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 29/212 (13%), Positives = 61/212 (28%), Gaps = 24/212 (11%)

Query: 1   HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSL 60
            L  I  L           ++E +   + L  L   +N+I       +           L
Sbjct: 39  DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDLAPLKN-----------L 84

Query: 61  LLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP 120
              +         K +     L+ +    +          L   + L+ L+L  + I   
Sbjct: 85  TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI 144

Query: 121 FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180
             L    + +   +  +  +    +          L +     N +    P    ++  L
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANL-----SKLTTLKADDNKISDISP--LASLPNL 197

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSN 212
             + L +NQ++   P        NL  + L+N
Sbjct: 198 IEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 8/103 (7%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHG----SIPSSFGNMNFLRILDLS 186
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 187 SNQLTGE----IPERLAVGCVNLEFLALSNNNLKGHMFCRNFN 225
           SN+L       + + L      ++ L+L N  L G       +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 106

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 6e-05
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 171 PSSFGNMNFLRILDLSSNQLTGEIPERLA---VGCVNLEFLALSNNNLKGH---MFCRNF 224
                  + LR+L L+   ++      LA   +   +L  L LSNN L          + 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 225 --NLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267
                 L QL L D  +  E+         L+ L  +  SL  I+
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 8e-05
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 20/90 (22%)

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
           ++ LD+   +L+      L       + + L +  L                        
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--------------------TEAR 43

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMP 269
             +I  +L    +L  L L +N L D+ + 
Sbjct: 44  CKDISSALRVNPALAELNLRSNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 9/102 (8%)

Query: 218 HMFCRNFNLANLRQLQLEDNRF----IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHL 273
                    + LR L L D          +  +L    SL  L L+NN L D  +    L
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI--LQL 417

Query: 274 EGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL 315
              +    C    L  L + D   S  +      L   K  L
Sbjct: 418 VESVRQPGC---LLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 72  FPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL 131
              FL   +   ++  +   +        + +N   +   L            I      
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT 191
              ++   N   +    + D+ PSL   N+S N L   +P+       L  L  S N L 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 317

Query: 192 GEIPERLAVGCVNLEFLALSNNNLKG 217
            E+PE       NL+ L +  N L+ 
Sbjct: 318 -EVPELPQ----NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 77  YHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDV 136
              +  +   L            +    ++L       ++     R        L  L+V
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 137 SNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPE 196
           SNN        E+  + P L     S N L   +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 197 RLAVGCVNLEFLALSN 212
                  ++E L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 40/313 (12%), Positives = 86/313 (27%), Gaps = 22/313 (7%)

Query: 2   LTSIEELYLSNNHF-QIPISLEPLFNHSRLK-RLWAYNNEIKAEITESHSLTAPNFQLQS 59
              +E L  S N   ++P   + L +       L A ++          S        + 
Sbjct: 57  PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 116

Query: 60  LLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG 119
              S      V              +       N       L+N   L  ++  N+S+  
Sbjct: 117 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK 176

Query: 120 PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF 179
              LP+     +   ++     +      +  I           +        +  +   
Sbjct: 177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 236

Query: 180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239
             + +L  +    ++ E +  G   L       N     +        +L +L + +N+ 
Sbjct: 237 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK- 295

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299
           + E+P        LE L  + N L+++                   +L  L +  N +  
Sbjct: 296 LIELPALPP---RLERLIASFNHLAEVPE--------------LPQNLKQLHVEYNPLRE 338

Query: 300 --SLPSCFHPLYI 310
              +P     L +
Sbjct: 339 FPDIPESVEDLRM 351

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 11/188 (5%)

Query: 3   TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLL 62
                L+LS N      SL  L  ++RL +L     E         +    +  L  L  
Sbjct: 31  KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAE--------LTKLQVDGTLPVLGT 81

Query: 63  SSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR 122
                + +     L        V           P   L    +L+ L+L  + +     
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 123 LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182
             + P  +L  L ++NNN        +   L +L +  +  N+L+ +IP  F   + L  
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 183 LDLSSNQL 190
             L  N  
Sbjct: 200 AFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 14/195 (7%)

Query: 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ- 189
              ++    N    +P ++          ++S N L+    ++      L  L+L   + 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 190 --------LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241
                   L       L+   +    L          +      L +L    L     + 
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 242 EIPQSLSKCSSL-EGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGS 300
           E+    ++  +L  GL      L  +++  N+L          L +L  L + +N++   
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 301 LPSCFHPLYIKKVHL 315
               F    +    L
Sbjct: 188 PKGFFGSHLLPFAFL 202

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240
           + LDL+   L  ++  RL      +       + +   +   +F+   ++ + L ++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIE 59

Query: 241 GE-IPQSLSKCSSLEGLYLNNNSLSDITMP 269
              +   LS+CS L+ L L    LSD  + 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 40/271 (14%), Positives = 83/271 (30%), Gaps = 18/271 (6%)

Query: 8   LYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYG 67
           L L+  +   P     L +   +      +      + +  +     F++Q + LS+   
Sbjct: 5   LDLTGKNLH-PDVTGRLLSQGVIAFRCPRSF-----MDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 68  DGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHP 127
           +  T    L     L+++ L  ++++    N  L  N+ L  L L   S    F L    
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 128 HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF-------NISTNALHGSIPSSFGNMNFL 180
               R  +++ +         +   +  +              N     + +       L
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF-NLANLRQLQLEDNRF 239
             LDLS + +      +       L+ L+LS               +  L+ LQ+     
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 237

Query: 240 IGEIPQSLSKCSSLEGLYLNNNSLSDITMPK 270
            G +         L+   +N +  + I  P 
Sbjct: 238 DGTLQLLKEALPHLQ---INCSHFTTIARPT 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.51

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.1e-28  Score=206.15  Aligned_cols=253  Identities=25%  Similarity=0.345  Sum_probs=157.0

Q ss_pred             ccceeecccccccc---cccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccc
Q 039327           29 RLKRLWAYNNEIKA---EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNA  105 (315)
Q Consensus        29 ~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  105 (315)
                      ++++|+|+++.+.+   +|..+.+  ++  +|++|+++.++.+.+.+|..+.++++|++|++++|++.+..+.. +..++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~--L~--~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~  125 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN--LP--YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIK  125 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG--CT--TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc--Cc--cccccccccccccccccccccccccccchhhhcccccccccccc-ccchh
Confidence            46666776666653   5566554  55  67777772235666666666677777777777777666555544 35666


Q ss_pred             ccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEc
Q 039327          106 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDL  185 (315)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  185 (315)
                      +|+++++++|.+...+|..+..+++++++++++|.+.+.+|..+......++.+++.+|.+++..|..+..+.. ..+++
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l  204 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDL  204 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEEC
T ss_pred             hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            67777777666666666666667777777777666666666666552323466666666666555555555443 35666


Q ss_pred             cCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327          186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD  265 (315)
Q Consensus       186 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~  265 (315)
                      ..+...+.+|.... ..+.++.++++++.+.+.++ .+..+++++.|++++|++++.+|..++.+++|++|++++|++. 
T Consensus       205 ~~~~~~~~~~~~~~-~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~-  281 (313)
T d1ogqa_         205 SRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-  281 (313)
T ss_dssp             CSSEEEECCGGGCC-TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-
T ss_pred             cccccccccccccc-cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc-
Confidence            66666655554443 46666777777766655433 4556667777777777777666777777777777777666554 


Q ss_pred             ccCCCCccccCCchhhcccCCCCEEecccCc-cCCC
Q 039327          266 ITMPKNHLEGPIPVEFCQLYSLHILDISDNN-ISGS  300 (315)
Q Consensus       266 l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-~~~~  300 (315)
                               |.+| .++++++|+.+++++|+ +.+.
T Consensus       282 ---------g~iP-~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         282 ---------GEIP-QGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             ---------EECC-CSTTGGGSCGGGTCSSSEEEST
T ss_pred             ---------ccCC-CcccCCCCCHHHhCCCccccCC
Confidence                     2445 34566667777777665 4433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=5.3e-28  Score=202.04  Aligned_cols=244  Identities=27%  Similarity=0.407  Sum_probs=212.5

Q ss_pred             ccEEEEeccCCCCcc--ccccccccCCCCCeEEecC-ceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCcc
Q 039327           56 QLQSLLLSSGYGDGV--TFPKFLYHQHDLEDVHLSH-IKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLR  132 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  132 (315)
                      +++.|++ +++.+.+  .+|..+.++++|++|++++ |.+++.+|..+ +++++|++|++++|++.+..+..+..+.+|+
T Consensus        51 ~v~~L~L-~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDL-SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEE-ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEC-CCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            6999999 8888876  4789999999999999997 78999999986 8999999999999999988888899999999


Q ss_pred             EEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCC-cEEEccCccccCcCchhhccCCCcccEEEcc
Q 039327          133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL-RILDLSSNQLTGEIPERLAVGCVNLEFLALS  211 (315)
Q Consensus       133 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  211 (315)
                      ++++++|.+...+|..+.. ++.++.+++.+|.+.+.+|..+..+..+ +.+++++|.+.+..+..+. .. ....+++.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~-l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~-~l-~~~~l~l~  205 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GC-CCSEEECC
T ss_pred             ccccccccccccCchhhcc-Ccccceeecccccccccccccccccccccccccccccccccccccccc-cc-cccccccc
Confidence            9999999988888888876 8999999999999998889888888776 8899999999877666654 23 45579999


Q ss_pred             CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEe
Q 039327          212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILD  291 (315)
Q Consensus       212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~  291 (315)
                      .+...+..+..+..++.++.+++.++.+.+.+ ..++.+++++.|++++|++.          |.+|.+++++++|+.|+
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~----------g~iP~~l~~L~~L~~L~  274 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY----------GTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCE----------ECCCGGGGGCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccCccCeec----------ccCChHHhCCCCCCEEE
Confidence            98888888888889999999999999998654 45788899999999988765          47899999999999999


Q ss_pred             cccCccCCCCCCCccccccceecC
Q 039327          292 ISDNNISGSLPSCFHPLYIKKVHL  315 (315)
Q Consensus       292 l~~n~~~~~~~~~~~~~~L~~l~l  315 (315)
                      +++|++++.+|+...+++|+.+++
T Consensus       275 Ls~N~l~g~iP~~~~L~~L~~l~l  298 (313)
T d1ogqa_         275 VSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             CCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             CcCCcccccCCCcccCCCCCHHHh
Confidence            999999999997644888887754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.7e-25  Score=191.76  Aligned_cols=275  Identities=21%  Similarity=0.261  Sum_probs=191.7

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD   81 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~   81 (315)
                      +.+|++|+++++.++ .+.  .+..+++|++|++++|++++++. +.+  ++  +|++|++ ++|.+.+..  .+..+++
T Consensus        43 l~~l~~L~l~~~~I~-~l~--gl~~L~nL~~L~Ls~N~l~~l~~-l~~--L~--~L~~L~L-~~n~i~~i~--~l~~l~~  111 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP-LKN--LT--KLVDILM-NNNQIADIT--PLANLTN  111 (384)
T ss_dssp             HTTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCCCG--GGTTCTT
T ss_pred             hCCCCEEECCCCCCC-Ccc--ccccCCCCCEEeCcCCcCCCCcc-ccC--Cc--ccccccc-ccccccccc--ccccccc
Confidence            467999999999987 443  67889999999999999998764 444  55  8999999 888887543  3788999


Q ss_pred             CCeEEecCceecccCCh--------------------------------------------------------------h
Q 039327           82 LEDVHLSHIKMNGKFPN--------------------------------------------------------------W   99 (315)
Q Consensus        82 L~~L~l~~~~~~~~~~~--------------------------------------------------------------~   99 (315)
                      |+.|+++++.+++..+.                                                              .
T Consensus       112 L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         112 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            99999887765421110                                                              0


Q ss_pred             hhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCC
Q 039327          100 LLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF  179 (315)
Q Consensus       100 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~  179 (315)
                      ....+++++.++++++.+.+..+  +..+++|++|++++|.++ .++ .+. .+++++.+++.+|.+++. + .+..+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~-~-~~~~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNL-A-PLSGLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC-G-GGTTCTT
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-hhh-cccccchhccccCccCCC-C-ccccccc
Confidence            12334556666666666554322  344566777777777665 443 233 266777777777766632 2 2566677


Q ss_pred             CcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEcc
Q 039327          180 LRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLN  259 (315)
Q Consensus       180 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  259 (315)
                      |++++++++.+. .++.  +..++.++.+.+..|.+.+.  ..+..+++++.+++++|.+++..  .+..+++|++|+++
T Consensus       265 L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~  337 (384)
T d2omza2         265 LTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFA  337 (384)
T ss_dssp             CSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECC
T ss_pred             CCEeeccCcccC-CCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECC
Confidence            777777777665 3332  22366667777777766552  34567888899999999887542  36788899999999


Q ss_pred             CCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          260 NNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       260 ~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                      +|+++.           ++ ++.++++|+.|++++|++++..|  +. +++|++|+|
T Consensus       338 ~n~l~~-----------l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         338 NNKVSD-----------VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             SSCCCC-----------CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred             CCCCCC-----------Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence            988773           33 58899999999999999995544  55 999999886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.5e-24  Score=180.16  Aligned_cols=280  Identities=20%  Similarity=0.204  Sum_probs=209.9

Q ss_pred             cceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327            5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE   83 (315)
Q Consensus         5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~   83 (315)
                      .+.++-++..++ .+|. .+  .+.+++|+|++|.++.+|.. +.+  ++  +|++|++ +.+.+....|..+.++++|+
T Consensus        12 ~~~~~C~~~~L~-~lP~-~l--~~~l~~L~Ls~N~i~~l~~~~f~~--l~--~L~~L~l-~~n~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPK-DL--PPDTALLDLQNNKITEIKDGDFKN--LK--NLHTLIL-INNKISKISPGAFAPLVKLE   82 (305)
T ss_dssp             TTEEECTTSCCC-SCCC-SC--CTTCCEEECCSSCCCCBCTTTTTT--CT--TCCEEEC-CSSCCCCBCTTTTTTCTTCC
T ss_pred             CCEEEecCCCCC-ccCC-CC--CCCCCEEECcCCcCCCcChhHhhc--cc--ccccccc-ccccccccchhhhhCCCccC
Confidence            456677777776 6774 33  25799999999999988764 443  55  8999999 88888877778888999999


Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC-CCchhhhhcCCCceEEEee
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG-HIPVEIGDILPSLFSFNIS  162 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~  162 (315)
                      +|++++|+++ .+|..   ..+.++.|.+.+|.+....+..+.....+..++...+.... ......+..+++|+.+++.
T Consensus        83 ~L~l~~n~l~-~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          83 RLYLSKNQLK-ELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             EEECCSSCCS-BCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             EecccCCccC-cCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence            9999999887 55653   35678889999988876655566777788888887664321 1112233347899999999


Q ss_pred             cCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327          163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE  242 (315)
Q Consensus       163 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  242 (315)
                      +|.++ .+|..  .++++++|++++|......+ ..+..++.++.|++++|.+.+..+..+..+++|++|++++|.++ .
T Consensus       159 ~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~  233 (305)
T d1xkua_         159 DTNIT-TIPQG--LPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K  233 (305)
T ss_dssp             SSCCC-SCCSS--CCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred             cCCcc-ccCcc--cCCccCEEECCCCcCCCCCh-hHhhccccccccccccccccccccccccccccceeeeccccccc-c
Confidence            99887 45543  36789999999998874444 44556889999999999999888888889999999999999998 6


Q ss_pred             cccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC--CCCCCCcc
Q 039327          243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS--GSLPSCFH  306 (315)
Q Consensus       243 ~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~--~~~~~~~~  306 (315)
                      +|.++..+++|++|++++|+|+.++  ...+.  .+......++|+.|++++|.+.  ...|..|.
T Consensus       234 lp~~l~~l~~L~~L~Ls~N~i~~i~--~~~f~--~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~  295 (305)
T d1xkua_         234 VPGGLADHKYIQVVYLHNNNISAIG--SNDFC--PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  295 (305)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCC--TTSSS--CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             cccccccccCCCEEECCCCccCccC--hhhcc--CcchhcccCCCCEEECCCCcCccCcCCHhHhc
Confidence            6888899999999999999998654  11111  1233456778999999999874  34455555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.2e-24  Score=179.19  Aligned_cols=260  Identities=21%  Similarity=0.209  Sum_probs=203.0

Q ss_pred             ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      ..++++.++..++.+|..+..      ++++|++ ++|.++...+.++.++++|++|++++|.+....|.. +..+++|+
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~------~l~~L~L-s~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~-f~~l~~L~   82 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPP------DTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLE   82 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCT------TCCEEEC-CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCC
T ss_pred             cCCEEEecCCCCCccCCCCCC------CCCEEEC-cCCcCCCcChhHhhccccccccccccccccccchhh-hhCCCccC
Confidence            678888888889888887544      8999999 888888555557889999999999999988554555 58899999


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC--CCCCccccCCCCCcEEEcc
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH--GSIPSSFGNMNFLRILDLS  186 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~  186 (315)
                      +|++++|++.. +|..  ....++.|+..++.+. .++...+........++...+...  ...+..+..+++|+.++++
T Consensus        83 ~L~l~~n~l~~-l~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          83 RLYLSKNQLKE-LPEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             EEECCSSCCSB-CCSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             EecccCCccCc-Cccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence            99999998874 4433  3467888999988887 566655555677788887776543  2334567788899999999


Q ss_pred             CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccc
Q 039327          187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI  266 (315)
Q Consensus       187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l  266 (315)
                      +|.+. .++...   +++++.|++++|......+..+..++.++.|++++|.+.+..+.++..+++|++|++++|.++  
T Consensus       159 ~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~--  232 (305)
T d1xkua_         159 DTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--  232 (305)
T ss_dssp             SSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--
T ss_pred             cCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc--
Confidence            99887 666553   678899999999888887888888999999999999998777888888999999999999877  


Q ss_pred             cCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc------c-ccccceecC
Q 039327          267 TMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF------H-PLYIKKVHL  315 (315)
Q Consensus       267 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~------~-~~~L~~l~l  315 (315)
                               .+|.++..+++|+.|++++|+++......|      . .++|+.|+|
T Consensus       233 ---------~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         233 ---------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             ---------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             ---------ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEEC
Confidence                     467788899999999999999884332222      2 455666553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-24  Score=178.02  Aligned_cols=224  Identities=21%  Similarity=0.140  Sum_probs=178.1

Q ss_pred             ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327           31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL  110 (315)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  110 (315)
                      ..++.++.+++.+|..+..      .+++|++ ++|.++..-+.++.++++|++|+++++.+....+.. +..++.++++
T Consensus        14 ~~v~c~~~~L~~iP~~ip~------~~~~L~L-s~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~-~~~~~~~~~l   85 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIPA------ASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQL   85 (284)
T ss_dssp             CEEECCSSCCSSCCTTCCT------TCSEEEC-TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEE
T ss_pred             eEEEcCCCCCCccCCCCCC------CCCEEEC-cCCcCCCCCHHHhhcccccccccccccccccccccc-cccccccccc
Confidence            3456777778888877543      7889999 888888655567888899999999988887544433 4677888887


Q ss_pred             Eee-cCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc
Q 039327          111 FLI-NDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ  189 (315)
Q Consensus       111 ~l~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  189 (315)
                      ... .+.+....+..++++++|++|++++|.+. .++...+....+|+.+++.+|.+++..+..|..+++|+.|++++|.
T Consensus        86 ~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence            765 45555556778888999999999988886 5555555557889999999998886666778888889999999998


Q ss_pred             ccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          190 LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      +. .++...+..+++|+.+++++|.+.+..+..+..++++++|++++|.+.+..+.++..+++|+++++++|.+.
T Consensus       165 l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cc-ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            87 666666767889999999999988888888888999999999999998777788888899999999988765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=1.3e-23  Score=179.95  Aligned_cols=257  Identities=22%  Similarity=0.307  Sum_probs=204.9

Q ss_pred             CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccc----------
Q 039327            2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT----------   71 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------   71 (315)
                      +++|++|++++|.++ .++  .++++++|++|++++|.+.+++. +.+  .+  +|+.|++ .++.+.+.          
T Consensus        65 L~nL~~L~Ls~N~l~-~l~--~l~~L~~L~~L~L~~n~i~~i~~-l~~--l~--~L~~L~~-~~~~~~~~~~~~~~~~~~  135 (384)
T d2omza2          65 LNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIADITP-LAN--LT--NLTGLTL-FNNQITDIDPLKNLTNLN  135 (384)
T ss_dssp             CTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCCCGGGTTCTTCS
T ss_pred             CCCCCEEeCcCCcCC-CCc--cccCCcccccccccccccccccc-ccc--cc--ccccccc-cccccccccccccccccc
Confidence            689999999999997 454  58999999999999999988653 333  55  8999998 66665431          


Q ss_pred             -----------------------------------------------------cccccccCCCCCeEEecCceecccCCh
Q 039327           72 -----------------------------------------------------FPKFLYHQHDLEDVHLSHIKMNGKFPN   98 (315)
Q Consensus        72 -----------------------------------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~   98 (315)
                                                                           .......++.++.++++++.+++..|.
T Consensus       136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~  215 (384)
T d2omza2         136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL  215 (384)
T ss_dssp             EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred             ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcc
Confidence                                                                 012344567888999999988765442


Q ss_pred             hhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCC
Q 039327           99 WLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN  178 (315)
Q Consensus        99 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~  178 (315)
                         ..+++|+++++++|.+..  ...+..+++|+.+++++|.++ .++. +.. +++|++++++++.+++ .+ .+..++
T Consensus       216 ---~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~-~~~~-~~~-~~~L~~L~l~~~~l~~-~~-~~~~~~  285 (384)
T d2omza2         216 ---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS-NLAP-LSG-LTKLTELKLGANQISN-IS-PLAGLT  285 (384)
T ss_dssp             ---GGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC-CCGG-GTT-CTTCSEEECCSSCCCC-CG-GGTTCT
T ss_pred             ---cccCCCCEEECCCCCCCC--cchhhcccccchhccccCccC-CCCc-ccc-cccCCEeeccCcccCC-CC-cccccc
Confidence               568899999999999875  235788999999999999988 4543 333 8899999999999884 33 377889


Q ss_pred             CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEc
Q 039327          179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYL  258 (315)
Q Consensus       179 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  258 (315)
                      .++.+.+..|.+. .++. + ..++.++.+++++|.+.+..  .+..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus       286 ~l~~l~~~~n~l~-~~~~-~-~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l  358 (384)
T d2omza2         286 ALTNLELNENQLE-DISP-I-SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSA  358 (384)
T ss_dssp             TCSEEECCSSCCS-CCGG-G-GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEEC
T ss_pred             ccccccccccccc-cccc-c-chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEEC
Confidence            9999999999987 4433 2 35889999999999998754  36789999999999999984 44 5889999999999


Q ss_pred             cCCccccccCCCCccccCCchhhcccCCCCEEecccCc
Q 039327          259 NNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN  296 (315)
Q Consensus       259 ~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  296 (315)
                      ++|++++           ++ .+.++++|+.|++++|.
T Consensus       359 ~~N~l~~-----------l~-~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         359 GHNQISD-----------LT-PLANLTRITQLGLNDQA  384 (384)
T ss_dssp             CSSCCCB-----------CG-GGTTCTTCSEEECCCEE
T ss_pred             CCCcCCC-----------Ch-hhccCCCCCEeeCCCCc
Confidence            9999874           33 38899999999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.1e-23  Score=168.58  Aligned_cols=225  Identities=20%  Similarity=0.204  Sum_probs=187.7

Q ss_pred             EEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEccc
Q 039327           59 SLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSN  138 (315)
Q Consensus        59 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  138 (315)
                      .++. ++.+++ .+|..+.  ..+++|++++|+++ .+|...+..+++|++|+++++.+....+..+.....+..+....
T Consensus        15 ~v~c-~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSC-PQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEEC-CSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEc-CCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            3445 444454 4565433  56899999999998 55544468999999999999999888888888899999988754


Q ss_pred             -CcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCC
Q 039327          139 -NNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG  217 (315)
Q Consensus       139 -~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  217 (315)
                       +.+. .++...+..+++|++|++.+|.+....+..+...++|+.+++++|.+. .++...+...+.|+.|++++|.+..
T Consensus        90 ~~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             ccccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccc
Confidence             4454 666655556899999999999988666667888999999999999998 7777777778999999999999998


Q ss_pred             cccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCcc
Q 039327          218 HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI  297 (315)
Q Consensus       218 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~  297 (315)
                      ..+.++..+++|+.+++++|.+++..|..+..++++++|++++|.+..          ..+.+|..+++|+.|++++|.+
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~----------~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA----------LPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC----------CCHHHHTTCTTCCEEECCSSCE
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc----------ccccccccccccCEEEecCCCC
Confidence            888899999999999999999998889999999999999999998875          3368899999999999999988


Q ss_pred             CCC
Q 039327          298 SGS  300 (315)
Q Consensus       298 ~~~  300 (315)
                      ...
T Consensus       238 ~C~  240 (284)
T d1ozna_         238 VCD  240 (284)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            744

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-23  Score=167.73  Aligned_cols=205  Identities=22%  Similarity=0.148  Sum_probs=155.2

Q ss_pred             cccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhh
Q 039327           22 EPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLL  101 (315)
Q Consensus        22 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  101 (315)
                      ........+.+++.+++.++.+|..+..      ++++|++ ++|.+++..+..+.++++|++|++++|.++ .++.  +
T Consensus         4 C~~~~~~~~~~v~C~~~~L~~iP~~lp~------~l~~L~L-s~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~   73 (266)
T d1p9ag_           4 CEVSKVASHLEVNCDKRNLTALPPDLPK------DTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--D   73 (266)
T ss_dssp             SEEECSTTCCEEECTTSCCSSCCSCCCT------TCCEEEC-TTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--C
T ss_pred             cEEcccCCCeEEEccCCCCCeeCcCcCc------CCCEEEC-cCCcCCCcCHHHhhcccccccccccccccc-cccc--c
Confidence            3445566677788999899988887544      8999999 888888766677888999999999999887 4443  3


Q ss_pred             hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327          102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR  181 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  181 (315)
                      +.+++|++|++++|++.. .+..+..+++|++|+++++.+. .++......+.++++|++.+|.++...+..+..+++++
T Consensus        74 ~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             SCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccc-eeeccccccccccccccccccccceeccccccccccch
Confidence            678889999999988874 4667788888888888888876 55555555577888888888888755556667778888


Q ss_pred             EEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       182 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      .+++++|.+. .++...+..+++|+.|++++|+++. +|..+..+++|+.|++++|.+.
T Consensus       152 ~l~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             EEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBC
T ss_pred             hccccccccc-ccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecCCCCC
Confidence            8888888887 5555555567788888888888774 4555556777888888877764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.2e-23  Score=166.46  Aligned_cols=198  Identities=25%  Similarity=0.236  Sum_probs=161.6

Q ss_pred             ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327           56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD  135 (315)
Q Consensus        56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  135 (315)
                      .+.+++- ++++++ .+|..+.  +++++|++++|.+++ ++...|..+++|++|++++|.++. ++ .++.+++|++|+
T Consensus        11 ~~~~v~C-~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_          11 SHLEVNC-DKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             TCCEEEC-TTSCCS-SCCSCCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             CCeEEEc-cCCCCC-eeCcCcC--cCCCEEECcCCcCCC-cCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence            4555677 677777 4665443  578999999999874 444435889999999999999874 33 457889999999


Q ss_pred             cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327          136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL  215 (315)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  215 (315)
                      +++|.+. ..+..+.. +++|+.|+++++.+....+..+..+.+++++++++|.+. .++...+..++.++.+++++|++
T Consensus        84 Ls~N~l~-~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             CCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccccccc-cccccccc-ccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccc
Confidence            9999987 55655554 889999999999888666777888899999999999988 77777777788999999999999


Q ss_pred             CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      ++..+..+..+++|++|++++|.++ .+|..+...++|+.|++++|.+.
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            9888888888999999999999998 77888888899999999998754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=145.44  Aligned_cols=214  Identities=16%  Similarity=0.073  Sum_probs=131.8

Q ss_pred             ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327           31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL  110 (315)
Q Consensus        31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  110 (315)
                      +.++.++..++.+|..+..      ++++|++ +++.++...+.++.++++|++|++++|.+...++...|..++.++++
T Consensus        11 ~~i~c~~~~l~~iP~~l~~------~l~~L~L-s~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPR------NAIELRF-VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCS------CCSEEEE-ESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             CEEEEeCCCCCCcCCCCCC------CCCEEEC-cCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            5777777777778776443      7888888 77787754455678888888888888877655554445677888888


Q ss_pred             Eeec-CCCcCcCcCCCcCCCCccEEEcccCcCCCCCch-hhhhcCCCceEEEeecCcCCCCCCccccCCC-CCcEEEccC
Q 039327          111 FLIN-DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV-EIGDILPSLFSFNISTNALHGSIPSSFGNMN-FLRILDLSS  187 (315)
Q Consensus       111 ~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~  187 (315)
                      .+.. +.+....+..+..+++|+++++.++.+. ..+. .....+..+..+...++.+....+..+..++ .++.+++++
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             cccccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            7764 4555555666778888888888888776 3332 2222244455555555555533344444443 566677777


Q ss_pred             ccccCcCchhhccCCCcccEE-EccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCc
Q 039327          188 NQLTGEIPERLAVGCVNLEFL-ALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLE  254 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  254 (315)
                      |.+. .++...+. ...++.+ .+.+|.+++..+..+..+++|+.|++++|.++...+..+.++++|+
T Consensus       163 n~l~-~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         163 NGIQ-EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             SCCC-EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             cccc-cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccc
Confidence            7766 55555553 3444333 3455566655555566666666666666666533233333333333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.6e-19  Score=141.71  Aligned_cols=86  Identities=20%  Similarity=0.214  Sum_probs=35.3

Q ss_pred             ccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec-CcCCCCCCccccCCCCCcEEE
Q 039327          106 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMNFLRILD  184 (315)
Q Consensus       106 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~  184 (315)
                      ++++|++++|++....+.+|.++++|++|++++|.+...++...+..++.++++.+.. +.+....+..|..+++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444322233444444444444444443223332222344444444332 233323333344444444444


Q ss_pred             ccCcccc
Q 039327          185 LSSNQLT  191 (315)
Q Consensus       185 l~~n~~~  191 (315)
                      ++++.+.
T Consensus       110 l~~~~l~  116 (242)
T d1xwdc1         110 ISNTGIK  116 (242)
T ss_dssp             EESCCCC
T ss_pred             cchhhhc
Confidence            4444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=3.4e-17  Score=137.78  Aligned_cols=262  Identities=23%  Similarity=0.276  Sum_probs=155.5

Q ss_pred             CccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327            3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL   82 (315)
Q Consensus         3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L   82 (315)
                      .++++|+++++.++ .+| +   ..++|++|++++|+++++|..     ..  +|+.|++ .++.++. +++.   .+.|
T Consensus        38 ~~l~~LdLs~~~L~-~lp-~---~~~~L~~L~Ls~N~l~~lp~~-----~~--~L~~L~l-~~n~l~~-l~~l---p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLP-E---LPPHLESLVASCNSLTELPEL-----PQ--SLKSLLV-DNNNLKA-LSDL---PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCS-CCC-S---CCTTCSEEECCSSCCSSCCCC-----CT--TCCEEEC-CSSCCSC-CCSC---CTTC
T ss_pred             cCCCEEEeCCCCCC-CCC-C---CCCCCCEEECCCCCCcccccc-----hh--hhhhhhh-hhcccch-hhhh---cccc
Confidence            35889999999987 677 2   257899999999999988865     33  8999999 8887763 3321   2469


Q ss_pred             CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc------------------CCCcCCCCccEEEcccCcCCCC
Q 039327           83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR------------------LPIHPHRRLRFLDVSNNNFQGH  144 (315)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------~~l~~~~~L~~L~l~~~~~~~~  144 (315)
                      ++|++++|.+. .+|.  ++.+++|++++++++.+.....                  ..+..++.++.+.+.++... .
T Consensus       101 ~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~-~  176 (353)
T d1jl5a_         101 EYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-K  176 (353)
T ss_dssp             CEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-S
T ss_pred             ccccccccccc-cccc--hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc-c
Confidence            99999999987 5665  3688999999999887653211                  12333445555555554433 1


Q ss_pred             CchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhh----------------ccCCCcccEE
Q 039327          145 IPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERL----------------AVGCVNLEFL  208 (315)
Q Consensus       145 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----------------~~~~~~L~~L  208 (315)
                      ++..    ....+.+...++.+. ..+ .+..++.++.+++++|... ..+...                ....+.+...
T Consensus       177 ~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  249 (353)
T d1jl5a_         177 LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFL  249 (353)
T ss_dssp             CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             cccc----ccccccccccccccc-ccc-ccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            1110    001112222222111 111 2344555666666555443 221110                0012223333


Q ss_pred             EccCCCCCC----------------cccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCc
Q 039327          209 ALSNNNLKG----------------HMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNH  272 (315)
Q Consensus       209 ~l~~n~~~~----------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~  272 (315)
                      ++..+...+                ........+++|++|++++|.++ .+|.   .+++|+.|++++|+|+.       
T Consensus       250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-------  318 (353)
T d1jl5a_         250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-------  318 (353)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-------
T ss_pred             ccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCc-------
Confidence            333222111                01112234678999999999887 4554   35788899999888774       


Q ss_pred             cccCCchhhcccCCCCEEecccCccCCCCCCCcccccccee
Q 039327          273 LEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKV  313 (315)
Q Consensus       273 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l  313 (315)
                          +|..   +++|++|++++|+++ .+|+..  .+|+.|
T Consensus       319 ----l~~~---~~~L~~L~L~~N~L~-~lp~~~--~~L~~L  349 (353)
T d1jl5a_         319 ----VPEL---PQNLKQLHVEYNPLR-EFPDIP--ESVEDL  349 (353)
T ss_dssp             ----CCCC---CTTCCEEECCSSCCS-SCCCCC--TTCCEE
T ss_pred             ----cccc---cCCCCEEECcCCcCC-CCCccc--cccCee
Confidence                4432   457999999999998 777653  344444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=5.1e-18  Score=134.17  Aligned_cols=190  Identities=21%  Similarity=0.349  Sum_probs=111.3

Q ss_pred             cccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCC
Q 039327           76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPS  155 (315)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  155 (315)
                      ++.+.+|+.|++.+|.++ .++ . +..+++|++|++++|.+.+..  .+..+++++++++++|.++ .++ .+.. +++
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~-l~~  108 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAG-LQS  108 (227)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTT-CTT
T ss_pred             HHHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccc-ccc
Confidence            345566666666666665 232 2 256666666666666665422  2566666666666666655 443 2332 666


Q ss_pred             ceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327          156 LFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE  235 (315)
Q Consensus       156 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  235 (315)
                      |+++++.++.....  ..+...+.++.+.++.+.+. .... + ..+++|+.|++++|.+.+..  .+..+++|++|+++
T Consensus       109 L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         109 IKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-NISP-L-AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKAD  181 (227)
T ss_dssp             CCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             cccccccccccccc--chhccccchhhhhchhhhhc-hhhh-h-ccccccccccccccccccch--hhcccccceecccC
Confidence            66666666655422  22455566666666666554 2221 1 23666777777776665432  25566777777777


Q ss_pred             CCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEeccc
Q 039327          236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD  294 (315)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~  294 (315)
                      +|.+++ ++ .+..+++|++|++++|++++           ++ .+..+++|+.|++++
T Consensus       182 ~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-----------i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         182 DNKISD-IS-PLASLPNLIEVHLKNNQISD-----------VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             SSCCCC-CG-GGGGCTTCCEEECTTSCCCB-----------CG-GGTTCTTCCEEEEEE
T ss_pred             CCccCC-Ch-hhcCCCCCCEEECcCCcCCC-----------Cc-ccccCCCCCEEEeeC
Confidence            777663 22 35667777777777776663           22 366777777777753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=3.7e-17  Score=129.13  Aligned_cols=201  Identities=20%  Similarity=0.288  Sum_probs=157.0

Q ss_pred             eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327           84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST  163 (315)
Q Consensus        84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  163 (315)
                      .++++.+.+++...   .+.+.+|++|++.+|.+.. + ..+..+++|++|++++|.+. .++. +. .+++++++++.+
T Consensus        23 ~~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~-l~-~l~~l~~l~~~~   94 (227)
T d1h6ua2          23 KIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSG   94 (227)
T ss_dssp             HHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCS
T ss_pred             HHHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccc-cc-cccccccccccc
Confidence            34455555554433   3678899999999999885 3 46899999999999999987 4443 44 488999999999


Q ss_pred             CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327          164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI  243 (315)
Q Consensus       164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  243 (315)
                      |.++ .++ .+..+++|+.++++++... ..+.  +...+.+..+.++++.+....  .+..+++|++|++.+|.+.+. 
T Consensus        95 n~~~-~i~-~l~~l~~L~~l~l~~~~~~-~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-  166 (227)
T d1h6ua2          95 NPLK-NVS-AIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-  166 (227)
T ss_dssp             CCCS-CCG-GGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-
T ss_pred             cccc-ccc-ccccccccccccccccccc-ccch--hccccchhhhhchhhhhchhh--hhccccccccccccccccccc-
Confidence            9887 343 5788999999999998876 3332  224788899999998876543  456789999999999998743 


Q ss_pred             ccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327          244 PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL  315 (315)
Q Consensus       244 ~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l  315 (315)
                       ..+.++++|+.|++++|++.+           ++ .++++++|++|++++|+++ .++. +. +++|++|++
T Consensus       167 -~~l~~l~~L~~L~Ls~n~l~~-----------l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         167 -TPLANLSKLTTLKADDNKISD-----------IS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTL  224 (227)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCC-----------CG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEE
T ss_pred             -hhhcccccceecccCCCccCC-----------Ch-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEe
Confidence             337889999999999998874           33 4889999999999999998 4554 45 899998875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=6.9e-17  Score=125.86  Aligned_cols=145  Identities=26%  Similarity=0.346  Sum_probs=64.0

Q ss_pred             CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327          125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN  204 (315)
Q Consensus       125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  204 (315)
                      +..+++|++|++++|.++ .++. +. .+++|++|++++|.++ .++ .+..+++|+.+++++|.+. .++.  +..++.
T Consensus        64 l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~~--l~~l~~  135 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQ  135 (210)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CCGG--GGGCTT
T ss_pred             HhhCCCCCEEeCCCcccc-Cccc-cc-cCcccccccccccccc-ccc-ccccccccccccccccccc-cccc--cccccc
Confidence            334444444444444443 2221 11 1444444444444444 222 2444444444444444443 2221  112444


Q ss_pred             ccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhccc
Q 039327          205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL  284 (315)
Q Consensus       205 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~  284 (315)
                      ++.+++++|.+.+.  ..+..+++|+.+++++|.+++. + .+..+++|++|++++|.|++           ++ .+.++
T Consensus       136 l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-----------l~-~l~~l  199 (210)
T d1h6ta2         136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-----------LR-ALAGL  199 (210)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-----------CG-GGTTC
T ss_pred             cccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-----------Ch-hhcCC
Confidence            55555555544432  1233445555555555555422 1 24455555555555555542           22 35555


Q ss_pred             CCCCEEecc
Q 039327          285 YSLHILDIS  293 (315)
Q Consensus       285 ~~L~~L~l~  293 (315)
                      ++|+.|+++
T Consensus       200 ~~L~~L~Ls  208 (210)
T d1h6ta2         200 KNLDVLELF  208 (210)
T ss_dssp             TTCSEEEEE
T ss_pred             CCCCEEEcc
Confidence            556665554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.2e-17  Score=127.58  Aligned_cols=161  Identities=27%  Similarity=0.347  Sum_probs=97.8

Q ss_pred             CCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCccc
Q 039327          127 PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLE  206 (315)
Q Consensus       127 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  206 (315)
                      .++++++|+++++.+. .++ .+.. +++|++|++++|.++. .+. ++.+++|++|++++|.+. .++.  +..++.|+
T Consensus        38 ~l~~l~~L~l~~~~i~-~l~-~l~~-l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIK-SID-GVEY-LNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DITP--LANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             HhcCCCEEECCCCCCC-Ccc-cccc-CCCcCcCccccccccC-ccc-ccCCcccccccccccccc-cccc--cccccccc
Confidence            4556666666666665 342 2322 6667777777766663 222 666677777777766665 4432  23466777


Q ss_pred             EEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCC
Q 039327          207 FLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYS  286 (315)
Q Consensus       207 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~  286 (315)
                      .++++++.....  ..+..+++|+.+++++|.+.. + +.+..+++++.|++.+|++..           ++ .++++++
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-----------l~-~l~~l~~  173 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-----------LK-PLANLTT  173 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-----------CG-GGTTCTT
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-----------Cc-cccCCCC
Confidence            777776666543  234566777777777777652 2 345667777777777776653           22 3667777


Q ss_pred             CCEEecccCccCCCCCCCcc-cccccee
Q 039327          287 LHILDISDNNISGSLPSCFH-PLYIKKV  313 (315)
Q Consensus       287 L~~L~l~~n~~~~~~~~~~~-~~~L~~l  313 (315)
                      |+.|++++|+++ .++. +. +++|+.|
T Consensus       174 L~~L~ls~N~i~-~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         174 LERLDISSNKVS-DISV-LAKLTNLESL  199 (199)
T ss_dssp             CCEEECCSSCCC-CCGG-GGGCTTCSEE
T ss_pred             CCEEECCCCCCC-CCcc-ccCCCCCCcC
Confidence            777777777776 3443 34 6666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3e-18  Score=139.99  Aligned_cols=182  Identities=21%  Similarity=0.215  Sum_probs=102.2

Q ss_pred             CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccC-cCCCCCchhhhhcCCCceE
Q 039327           80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN-NFQGHIPVEIGDILPSLFS  158 (315)
Q Consensus        80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~  158 (315)
                      ..|++|+++++.++......++..+++|++|+++++.+.+..+..++.+++|++|++++| .+++.....+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            456666666666554444444566666666666666655544555556666666666664 2331111222333666777


Q ss_pred             EEeecCc-CCC-CCCcccc-CCCCCcEEEccCcc--ccCcCchhhccCCCcccEEEccCCC-CCCcccccccCCCCCCEE
Q 039327          159 FNISTNA-LHG-SIPSSFG-NMNFLRILDLSSNQ--LTGEIPERLAVGCVNLEFLALSNNN-LKGHMFCRNFNLANLRQL  232 (315)
Q Consensus       159 L~l~~n~-~~~-~~~~~l~-~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L  232 (315)
                      |+++++. ++. .....+. ..++|+.|+++++.  +.+..-..+...+++|+.|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            7776642 221 1111122 23567777776542  3222222333346777777777754 555555666677778888


Q ss_pred             EcCCC-ccccccccccccCCCCcEEEccCC
Q 039327          233 QLEDN-RFIGEIPQSLSKCSSLEGLYLNNN  261 (315)
Q Consensus       233 ~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n  261 (315)
                      ++++| .+++.....++.+|+|+.|++.++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            88774 455555556677778888887765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.2e-20  Score=159.41  Aligned_cols=141  Identities=23%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             CCceEEEeecCcCCCC----CCccccCCCCCcEEEccCccccCcCc----hhhccCCCcccEEEccCCCCCCcccc----
Q 039327          154 PSLFSFNISTNALHGS----IPSSFGNMNFLRILDLSSNQLTGEIP----ERLAVGCVNLEFLALSNNNLKGHMFC----  221 (315)
Q Consensus       154 ~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~----  221 (315)
                      ..++.+++++|.+...    ....+...+.++.+++++|.+.+...    ..+......|+.++++++.+......    
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            3455555555544311    11123344556666666655542111    11122234566777776666543222    


Q ss_pred             cccCCCCCCEEEcCCCccccc----cccccc-cCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCc
Q 039327          222 RNFNLANLRQLQLEDNRFIGE----IPQSLS-KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN  296 (315)
Q Consensus       222 ~~~~~~~L~~L~l~~n~~~~~----~~~~~~-~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  296 (315)
                      .+...++|++|++++|.++++    ++..+. ..+.|++|++++|.|++..      ...+++++..+++|++|++++|+
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~------~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS------CSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH------HHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH------HHHHHHHHhcCCCCCEEECCCCc
Confidence            233455677777777776543    222232 3456777777777665311      00234456667778888888877


Q ss_pred             cCCC
Q 039327          297 ISGS  300 (315)
Q Consensus       297 ~~~~  300 (315)
                      +++.
T Consensus       409 i~~~  412 (460)
T d1z7xw1         409 LGDA  412 (460)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            7643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.2e-16  Score=124.42  Aligned_cols=166  Identities=19%  Similarity=0.318  Sum_probs=108.7

Q ss_pred             cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327           78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF  157 (315)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  157 (315)
                      .+..|+.|+++++.++. ++.  +..+++|++|++++|++++..  .++.+++|++|++++|.++ .++ .+.. +++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~-l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS-VQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKD-LKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCC-CTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTT-CTTCC
T ss_pred             HhcCccEEECcCCCCCC-chh--HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-cccc-ccccc
Confidence            45567777777776653 222  256777777777777776532  3566777777777777776 454 2333 67777


Q ss_pred             EEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCC
Q 039327          158 SFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN  237 (315)
Q Consensus       158 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  237 (315)
                      .|++.+|.+. .. ..+..++.++.+++++|.+. ..+.  ...+++|+.+++++|.+.+..  .+..+++|++|++++|
T Consensus       116 ~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~-~~~~--~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         116 SLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             EEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             cccccccccc-cc-cccccccccccccccccccc-cccc--ccccccccccccccccccccc--cccCCCCCCEEECCCC
Confidence            7777777665 22 24667777777777777766 3322  224677788888887776543  3567778888888888


Q ss_pred             ccccccccccccCCCCcEEEccC
Q 039327          238 RFIGEIPQSLSKCSSLEGLYLNN  260 (315)
Q Consensus       238 ~~~~~~~~~~~~~~~L~~L~l~~  260 (315)
                      .+++ ++ .+.++++|++|++++
T Consensus       189 ~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 HISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCC-Ch-hhcCCCCCCEEEccC
Confidence            7763 33 467778888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.6e-16  Score=121.50  Aligned_cols=148  Identities=21%  Similarity=0.319  Sum_probs=69.2

Q ss_pred             cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327           78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF  157 (315)
Q Consensus        78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  157 (315)
                      .+.++++|+++++.++. +. . ++.+++|++|++++|++++..  .++++++|++|++++|.+. .++. +. .+++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~-l~-~-l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~-l~-~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-ID-G-VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-CT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCS
T ss_pred             HhcCCCEEECCCCCCCC-cc-c-cccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc-cc-cccccc
Confidence            44555556665555542 22 1 245556666666665554322  2455555555555555544 3332 22 255555


Q ss_pred             EEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCC
Q 039327          158 SFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN  237 (315)
Q Consensus       158 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  237 (315)
                      .+++.++.... . ..+..+++|+.+++++|.+. .++. + ..+++++.|++.+|.+++..  .+..+++|++|++++|
T Consensus       110 ~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~-l-~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         110 GLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DISA-L-SGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSN  182 (199)
T ss_dssp             EEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred             ccccccccccc-c-cccchhhhhHHhhhhhhhhc-cccc-c-cccccccccccccccccCCc--cccCCCCCCEEECCCC
Confidence            55555554442 1 12444555555555555444 2221 1 13444555555554444321  2334444444444444


Q ss_pred             ccc
Q 039327          238 RFI  240 (315)
Q Consensus       238 ~~~  240 (315)
                      +++
T Consensus       183 ~i~  185 (199)
T d2omxa2         183 KVS  185 (199)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.4e-16  Score=122.31  Aligned_cols=129  Identities=22%  Similarity=0.275  Sum_probs=68.4

Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      ++++.++++++ .+|..+  .+++++|++++|.++..++...+..+++|+.|++.+|.+....+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            34555555554 234333  245555666555554334333333355555555555555544445555555555555555


Q ss_pred             ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327          188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      |.+. .++...|..++.|+.|++++|.++...+.+|..+++|+++++++|.+.
T Consensus        88 N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            5555 444444445555555555555555555555555555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=1.2e-14  Score=121.86  Aligned_cols=243  Identities=24%  Similarity=0.266  Sum_probs=155.7

Q ss_pred             cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327           28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL  107 (315)
Q Consensus        28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  107 (315)
                      .++++|+|++++++.+|..     .+  +|++|++ ++|.++ .+|+.   ..+|+.|++++|.++ .++.    -.+.|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~-----~~--~L~~L~L-s~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL-----PP--HLESLVA-SCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC-----CT--TCSEEEC-CSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTC
T ss_pred             cCCCEEEeCCCCCCCCCCC-----CC--CCCEEEC-CCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccc
Confidence            3689999999999998864     44  8999999 889988 56754   468999999999887 4432    13579


Q ss_pred             ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327          108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS  187 (315)
Q Consensus       108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  187 (315)
                      ++|++++|.+.. +|. ++.+++|++|+++++.+. ..+..    ...+..+.+..+...  ....+..++.++.+.+.+
T Consensus       101 ~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~-~~~~~----~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         101 EYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADN  171 (353)
T ss_dssp             CEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCS
T ss_pred             cccccccccccc-ccc-hhhhccceeecccccccc-ccccc----cccccchhhcccccc--ccccccccccceeccccc
Confidence            999999999874 453 678999999999998876 44332    345666666554433  223455666667777666


Q ss_pred             ccccC-------------------cCchhhccCCCcccEEEccCCCCCCcccc----------------cccCCCCCCEE
Q 039327          188 NQLTG-------------------EIPERLAVGCVNLEFLALSNNNLKGHMFC----------------RNFNLANLRQL  232 (315)
Q Consensus       188 n~~~~-------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----------------~~~~~~~L~~L  232 (315)
                      +....                   .++.  ...++.++.+++++|........                .....+.+...
T Consensus       172 n~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  249 (353)
T d1jl5a_         172 NSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL  249 (353)
T ss_dssp             SCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             cccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55431                   1211  12467788888888765432110                00112233334


Q ss_pred             EcCCCccccc----------------cccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCc
Q 039327          233 QLEDNRFIGE----------------IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN  296 (315)
Q Consensus       233 ~l~~n~~~~~----------------~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~  296 (315)
                      ++..+.+.+.                ++.....+++|++|++++|++.           .+|.   .+++|+.|++++|+
T Consensus       250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----------~lp~---~~~~L~~L~L~~N~  315 (353)
T d1jl5a_         250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----------ELPA---LPPRLERLIASFNH  315 (353)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-----------CCCC---CCTTCCEEECCSSC
T ss_pred             ccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-----------cccc---ccCCCCEEECCCCc
Confidence            4333322210                0111122466777777777766           3453   35689999999999


Q ss_pred             cCCCCCCCccccccceecC
Q 039327          297 ISGSLPSCFHPLYIKKVHL  315 (315)
Q Consensus       297 ~~~~~~~~~~~~~L~~l~l  315 (315)
                      ++ .+|+.  +++|++|++
T Consensus       316 L~-~l~~~--~~~L~~L~L  331 (353)
T d1jl5a_         316 LA-EVPEL--PQNLKQLHV  331 (353)
T ss_dssp             CS-CCCCC--CTTCCEEEC
T ss_pred             CC-ccccc--cCCCCEEEC
Confidence            98 67765  556777764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=3.6e-17  Score=125.64  Aligned_cols=129  Identities=18%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             cceeecccccccccccccccCCCCccccEEEEeccCCCCccc-cccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327           30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT-FPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE  108 (315)
Q Consensus        30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  108 (315)
                      .++++.++++++++|.++..      ++++|++ ++|.++.. .+..+.++++|+.|++++|.+....+.. +..+++|+
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~------~l~~L~L-s~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~-~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPL------HTTELLL-NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT------TCSEEEC-CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCC
T ss_pred             CCEEEEeCCCcCccCCCCCC------CCCEEEe-CCCCCcccccccccCCCceEeeeeccccccccccccc-cccccccc
Confidence            35667777777776665432      6666777 66666542 2344555666666666666665433333 35556666


Q ss_pred             eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327          109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH  167 (315)
Q Consensus       109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  167 (315)
                      +|++++|++....+.+|.++++|++|++++|.++ .++...+..+++|+++++.+|.+.
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCcccccccccccccc
Confidence            6666666655544555555555555555555555 444443333555555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-16  Score=129.15  Aligned_cols=247  Identities=17%  Similarity=0.169  Sum_probs=154.8

Q ss_pred             ceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccc-cccccccCCCCCe
Q 039327            6 EELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT-FPKFLYHQHDLED   84 (315)
Q Consensus         6 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~   84 (315)
                      +++|++++.+........+.  ..+..+.++...+......    .....+|++|++ +++.+.+. +...+.++++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~----~~~~~~L~~LdL-s~~~i~~~~l~~l~~~c~~L~~   75 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE----HFSPFRVQHMDL-SNSVIEVSTLHGILSQCSKLQN   75 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCS----CCCCBCCCEEEC-TTCEECHHHHHHHHTTBCCCSE
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhh----hccCCCCCEEEC-CCCccCHHHHHHHHHhCCCccc
Confidence            46888887664221111111  1234444444433321111    122338999999 77776644 3455678899999


Q ss_pred             EEecCceecccCChhhhhcccccceeEeecC-CCcCcC-cCCCcCCCCccEEEcccCc-CCCC-CchhhhhcCCCceEEE
Q 039327           85 VHLSHIKMNGKFPNWLLENNAKLETLFLIND-SIGGPF-RLPIHPHRRLRFLDVSNNN-FQGH-IPVEIGDILPSLFSFN  160 (315)
Q Consensus        85 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~l~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~~L~~L~  160 (315)
                      |+++++.+++..+..+ +.+++|++|++++| .+++.. ......+++|++|++++|. +++. +...+...+++|+.|+
T Consensus        76 L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~  154 (284)
T d2astb2          76 LSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  154 (284)
T ss_dssp             EECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             ccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhh
Confidence            9999998877666665 77899999999886 444321 1224567899999998864 3311 2233444467899999


Q ss_pred             eecCc--CC-CCCCccccCCCCCcEEEccCcc-ccCcCchhhccCCCcccEEEccCC-CCCCcccccccCCCCCCEEEcC
Q 039327          161 ISTNA--LH-GSIPSSFGNMNFLRILDLSSNQ-LTGEIPERLAVGCVNLEFLALSNN-NLKGHMFCRNFNLANLRQLQLE  235 (315)
Q Consensus       161 l~~n~--~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~  235 (315)
                      +.++.  ++ ..+......+++|++|++++|. +++.....+. .+++|++|++++| .+++.....+..+++|+.|++.
T Consensus       155 l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             hcccccccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence            98753  33 1223334668899999998864 5545555554 5889999999986 5666555667788999999999


Q ss_pred             CCccccccccccccCCCCcEEEccCCccc
Q 039327          236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      ++.-.+.+......+|+|+.   ..+.++
T Consensus       234 ~~~~d~~l~~l~~~lp~L~i---~~~~ls  259 (284)
T d2astb2         234 GIVPDGTLQLLKEALPHLQI---NCSHFT  259 (284)
T ss_dssp             TSSCTTCHHHHHHHSTTSEE---SCCCSC
T ss_pred             CCCCHHHHHHHHHhCccccc---cCccCC
Confidence            87322223333345777653   444444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.3e-18  Score=146.20  Aligned_cols=300  Identities=21%  Similarity=0.146  Sum_probs=181.6

Q ss_pred             CCccceEEeecCcccc----cCCCcccCCCcccceeecccccccc-----cccccccCCCCccccEEEEeccCCCCccc-
Q 039327            2 LTSIEELYLSNNHFQI----PISLEPLFNHSRLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVT-   71 (315)
Q Consensus         2 l~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-   71 (315)
                      ++++++|+|++|.++.    .+. ..+..+++|++|++++|.++.     +...+.   .+..+|++|++ ++|.+++. 
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~---~~~~~L~~L~L-~~n~it~~~  100 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQ---TPSCKIQKLSL-QNCCLTGAG  100 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC---STTCCCCEEEC-TTSCCBGGG
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHHHHh---cCCCCCCEEEC-CCCCccccc
Confidence            4678888888887762    122 345678888888888888764     222211   23337888999 77887654 


Q ss_pred             ---cccccccCCCCCeEEecCceecccCChhh--------------------------------hhcccccceeEeecCC
Q 039327           72 ---FPKFLYHQHDLEDVHLSHIKMNGKFPNWL--------------------------------LENNAKLETLFLINDS  116 (315)
Q Consensus        72 ---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------------------------------~~~~~~L~~L~l~~~~  116 (315)
                         ++..+..+++|++|++++|.++......+                                ....+.++.++++++.
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~  180 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  180 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             cccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccc
Confidence               34556678888899888876542100000                                1112233333333221


Q ss_pred             Cc-----------------------------C---------------------------------cCcCCCcCCCCccEE
Q 039327          117 IG-----------------------------G---------------------------------PFRLPIHPHRRLRFL  134 (315)
Q Consensus       117 ~~-----------------------------~---------------------------------~~~~~l~~~~~L~~L  134 (315)
                      ..                             .                                 ...........++.+
T Consensus       181 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l  260 (460)
T d1z7xw1         181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL  260 (460)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccc
Confidence            11                             0                                 000112234567777


Q ss_pred             EcccCcCCCCC----chhhhhcCCCceEEEeecCcCCCCCCc----cc-cCCCCCcEEEccCccccCcCchh---hccCC
Q 039327          135 DVSNNNFQGHI----PVEIGDILPSLFSFNISTNALHGSIPS----SF-GNMNFLRILDLSSNQLTGEIPER---LAVGC  202 (315)
Q Consensus       135 ~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~----~l-~~~~~L~~L~l~~n~~~~~~~~~---~~~~~  202 (315)
                      ++++|.+....    ...+. ..+.++.+++.+|.++.....    .+ .....|+.++++++.+.......   .....
T Consensus       261 ~l~~n~i~~~~~~~~~~~l~-~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~  339 (460)
T d1z7xw1         261 WIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN  339 (460)
T ss_dssp             ECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccc
Confidence            77777664211    11222 377899999999987621111    11 23467999999999887432222   22346


Q ss_pred             CcccEEEccCCCCCCc----ccccc-cCCCCCCEEEcCCCccccc----cccccccCCCCcEEEccCCccccccCCCCcc
Q 039327          203 VNLEFLALSNNNLKGH----MFCRN-FNLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNNNSLSDITMPKNHL  273 (315)
Q Consensus       203 ~~L~~L~l~~n~~~~~----~~~~~-~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l  273 (315)
                      ++|+.|++++|.+.+.    .+..+ ...+.|++|++++|.+++.    ++..+..+++|++|++++|.|++-.+     
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~-----  414 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI-----  414 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH-----
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH-----
Confidence            7899999999998643    22233 2467899999999999753    34556778999999999998764110     


Q ss_pred             ccCCchhhcc-cCCCCEEecccCccCCCCCCCcc-----cccccee
Q 039327          274 EGPIPVEFCQ-LYSLHILDISDNNISGSLPSCFH-----PLYIKKV  313 (315)
Q Consensus       274 ~~~~~~~l~~-~~~L~~L~l~~n~~~~~~~~~~~-----~~~L~~l  313 (315)
                       ..+...+.. ...|+.|++.++.+.+.....+.     .++|+++
T Consensus       415 -~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         415 -LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             -HHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             -HHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence             011223332 23699999999998755544432     5666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1e-14  Score=108.22  Aligned_cols=128  Identities=16%  Similarity=0.130  Sum_probs=79.5

Q ss_pred             CCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEE
Q 039327          153 LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQL  232 (315)
Q Consensus       153 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  232 (315)
                      +..+++|++.+|.++ .++..+..+++|+.|++++|.+. .++.  +..+++|++|++++|.+....+..+..+++|++|
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccCC--cccCcchhhhhcccccccCCCccccccccccccc
Confidence            456777777777777 44555566777777777777776 4432  3346777777777777766555555567777777


Q ss_pred             EcCCCccccccc-cccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEe
Q 039327          233 QLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILD  291 (315)
Q Consensus       233 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~  291 (315)
                      ++++|.+..... ..+..+++|+++++.+|.+....       +.-+..+..+|+|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~-------~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK-------HYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST-------THHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCcccccc-------chHHHHHHHCCCcCeeC
Confidence            777777663221 34566677777777777665321       00012456667777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=1.2e-15  Score=128.06  Aligned_cols=140  Identities=21%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             CCCceEEEeecCcCCCC----CCccccCCCCCcEEEccCccccCcC----chhhccCCCcccEEEccCCCCCCc----cc
Q 039327          153 LPSLFSFNISTNALHGS----IPSSFGNMNFLRILDLSSNQLTGEI----PERLAVGCVNLEFLALSNNNLKGH----MF  220 (315)
Q Consensus       153 ~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~  220 (315)
                      .+.++.+.+.+|.++..    +...+..+++++++++++|.+....    ........++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34555555555554411    1122344555666666666554210    011122355666666666665431    22


Q ss_pred             ccccCCCCCCEEEcCCCccccccc----ccccc--CCCCcEEEccCCccccccCCCCccccCCchhhc-ccCCCCEEecc
Q 039327          221 CRNFNLANLRQLQLEDNRFIGEIP----QSLSK--CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFC-QLYSLHILDIS  293 (315)
Q Consensus       221 ~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~--~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~-~~~~L~~L~l~  293 (315)
                      ..+..+++|++|++++|.+++...    ..+..  .+.|++|++++|.|..-.+      ..+...+. ++++|+.|+++
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~------~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV------RTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH------HHHHHHHHHHCTTCCEEECT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH------HHHHHHHHccCCCCCEEECC
Confidence            344566667777777776654322    22222  3457777777776553110      01223332 45677777777


Q ss_pred             cCccC
Q 039327          294 DNNIS  298 (315)
Q Consensus       294 ~n~~~  298 (315)
                      +|++.
T Consensus       311 ~N~~~  315 (344)
T d2ca6a1         311 GNRFS  315 (344)
T ss_dssp             TSBSC
T ss_pred             CCcCC
Confidence            77775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=108.08  Aligned_cols=130  Identities=21%  Similarity=0.146  Sum_probs=92.9

Q ss_pred             CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327          125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN  204 (315)
Q Consensus       125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  204 (315)
                      +.++.++++|++++|.++ .++..+ ..+++|+.|++++|.++ .++ .+..+++|++|++++|.+. .++...+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~-~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGG-GGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccc-cccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccc
Confidence            445667777888887776 665433 33778888888888877 333 4677888888888888887 666655556888


Q ss_pred             ccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCcccccc---ccccccCCCCcEEEcc
Q 039327          205 LEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIGEI---PQSLSKCSSLEGLYLN  259 (315)
Q Consensus       205 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~  259 (315)
                      |+.|++++|.+..... ..+..+++|+++++++|.++...   +..+..+|+|+.||-.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            8888888888876432 45677888999999998886432   2346778888888733

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=7.7e-15  Score=123.00  Aligned_cols=235  Identities=17%  Similarity=0.170  Sum_probs=139.2

Q ss_pred             ccccCCCCCeEEecCceecccCChhh---hhcccccceeEeecCCCcCc----------CcCCCcCCCCccEEEcccCcC
Q 039327           75 FLYHQHDLEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGGP----------FRLPIHPHRRLRFLDVSNNNF  141 (315)
Q Consensus        75 ~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----------~~~~l~~~~~L~~L~l~~~~~  141 (315)
                      .+.....++.|++++|.+.......+   +...++|+.++++++.....          +...+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            34445556666666555543222221   23445566666555432210          112244556677777776666


Q ss_pred             CCCCchhh---hhcCCCceEEEeecCcCCCCCC-------------ccccCCCCCcEEEccCccccCcCchh---hccCC
Q 039327          142 QGHIPVEI---GDILPSLFSFNISTNALHGSIP-------------SSFGNMNFLRILDLSSNQLTGEIPER---LAVGC  202 (315)
Q Consensus       142 ~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~-------------~~l~~~~~L~~L~l~~n~~~~~~~~~---~~~~~  202 (315)
                      .......+   ....++|+.|++.+|.+.....             ......+.++.+.+++|.+.......   .....
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            53322211   1125677777777765531100             01234678999999998876332221   12247


Q ss_pred             CcccEEEccCCCCCCc-----ccccccCCCCCCEEEcCCCccccc----cccccccCCCCcEEEccCCccccccCCCCcc
Q 039327          203 VNLEFLALSNNNLKGH-----MFCRNFNLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNNNSLSDITMPKNHL  273 (315)
Q Consensus       203 ~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l  273 (315)
                      +.++.+++++|.+...     ....+..+++|+.|++++|.++..    +...+..+++|++|++++|.|.+-.+     
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~-----  260 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-----  260 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-----
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh-----
Confidence            7899999999998742     334567889999999999998643    34566788999999999998774210     


Q ss_pred             ccCCchhhcc--cCCCCEEecccCccCCCC----CCCcc--ccccceecC
Q 039327          274 EGPIPVEFCQ--LYSLHILDISDNNISGSL----PSCFH--PLYIKKVHL  315 (315)
Q Consensus       274 ~~~~~~~l~~--~~~L~~L~l~~n~~~~~~----~~~~~--~~~L~~l~l  315 (315)
                       ..+..++..  .+.|+.|++++|+++...    ...+.  ++.|++|++
T Consensus       261 -~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         261 -AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             -HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             -HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence             012233433  467999999999987432    22332  456777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.8e-13  Score=95.48  Aligned_cols=101  Identities=32%  Similarity=0.388  Sum_probs=44.6

Q ss_pred             EEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCC
Q 039327          158 SFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN  237 (315)
Q Consensus       158 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n  237 (315)
                      .|++++|.++ .++ .+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+++. + .+..+++|+++++++|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~-~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhh-hhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            3444555444 222 2444445555555555444 4443332 244455555555444432 1 2344444555555555


Q ss_pred             cccccc-ccccccCCCCcEEEccCCccc
Q 039327          238 RFIGEI-PQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       238 ~~~~~~-~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      .+++.. ...+..+++|+.+++++|.+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            444221 123344444455555444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2.9e-13  Score=95.38  Aligned_cols=101  Identities=21%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             EEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccC
Q 039327          133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSN  212 (315)
Q Consensus       133 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  212 (315)
                      +|++++|.++ .++. +.. +++|++|++++|.++ .+|..+..+++|+.|++++|.+. .++.  +..+++|+.+++++
T Consensus         2 ~L~Ls~n~l~-~l~~-l~~-l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCS
T ss_pred             EEEcCCCCCC-CCcc-ccc-CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeEECCC
Confidence            4455555554 3332 222 445555555555554 34444555555555555555554 3332  22355555555555


Q ss_pred             CCCCCcc-cccccCCCCCCEEEcCCCccc
Q 039327          213 NNLKGHM-FCRNFNLANLRQLQLEDNRFI  240 (315)
Q Consensus       213 n~~~~~~-~~~~~~~~~L~~L~l~~n~~~  240 (315)
                      |.+.+.. ...+..+++|+.+++++|.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            5555432 234455666666666666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=7e-14  Score=107.20  Aligned_cols=139  Identities=27%  Similarity=0.248  Sum_probs=70.8

Q ss_pred             chhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccC
Q 039327          146 PVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFN  225 (315)
Q Consensus       146 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  225 (315)
                      +..+.. +++|++|++++|.++ .++ .+..+++|+.|++++|.+. .++.... .++.|+.|++++|.++..  ..+..
T Consensus        41 ~~sl~~-L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~-~~~~L~~L~l~~N~i~~l--~~~~~  113 (198)
T d1m9la_          41 DATLST-LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIASL--SGIEK  113 (198)
T ss_dssp             HHHHHH-TTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHH-HHHHCCEEECSEEECCCH--HHHHH
T ss_pred             hhHHhc-ccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccc-cccccccccccccccccc--ccccc
Confidence            334443 556666666666555 232 3555566666666666555 4442222 234566666666665543  22445


Q ss_pred             CCCCCEEEcCCCccccccc-cccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEe
Q 039327          226 LANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILD  291 (315)
Q Consensus       226 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~  291 (315)
                      +++|+.|++++|.++.... ..+..+++|+.|++++|.+.............-...+..+|+|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            5666666666666653211 34556666666666666655432211111100112255677777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=8.1e-14  Score=106.86  Aligned_cols=84  Identities=21%  Similarity=0.235  Sum_probs=39.2

Q ss_pred             hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327          102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR  181 (315)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  181 (315)
                      ..+++|++|++++|.+.. + ..+..+++|++|++++|.++ .++..... +++|+.|++.+|.++. ++ .+..+++|+
T Consensus        45 ~~L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~~-l~-~~~~l~~L~  118 (198)
T d1m9la_          45 STLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVNLR  118 (198)
T ss_dssp             HHTTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECCC-HH-HHHHHHHSS
T ss_pred             hcccccceeECcccCCCC-c-ccccCCccccChhhcccccc-cccccccc-cccccccccccccccc-cc-ccccccccc
Confidence            455555555555555543 2 23445555555555555554 44322221 3345555555554442 21 234444444


Q ss_pred             EEEccCcccc
Q 039327          182 ILDLSSNQLT  191 (315)
Q Consensus       182 ~L~l~~n~~~  191 (315)
                      .|++++|.+.
T Consensus       119 ~L~L~~N~i~  128 (198)
T d1m9la_         119 VLYMSNNKIT  128 (198)
T ss_dssp             EEEESEEECC
T ss_pred             ccccccchhc
Confidence            4444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.9e-11  Score=86.21  Aligned_cols=104  Identities=18%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             cEEEcccCcCCCCCchhhhhcCCCceEEEeecC-cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEc
Q 039327          132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN-ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL  210 (315)
Q Consensus       132 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  210 (315)
                      +.++..++.+. .+|..+.. ++++++|++.++ .++...+..|..+++|+.|++++|.+. .++...|..+++|++|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~-l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEEC
T ss_pred             CeEEecCCCCc-cCcccccC-ccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccccceec
Confidence            33444444444 34444333 445555555433 244333334455555555555555554 444343444555555555


Q ss_pred             cCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327          211 SNNNLKGHMFCRNFNLANLRQLQLEDNRF  239 (315)
Q Consensus       211 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~  239 (315)
                      ++|++....+..+... .++.|++++|.+
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCcc
Confidence            5555544333333222 344555554444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.3e-10  Score=84.98  Aligned_cols=109  Identities=17%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             CCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc-ccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327          153 LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ-LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ  231 (315)
Q Consensus       153 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  231 (315)
                      +...+.++..++.+. ..|..+..++++++|++++++ +. .++...|..+++|+.|++++|++..+.+.+|..+++|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            344566888888777 567778889999999998764 76 777777778999999999999999888889999999999


Q ss_pred             EEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327          232 LQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS  264 (315)
Q Consensus       232 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~  264 (315)
                      |++++|+++ .++........++.|++++|.+.
T Consensus        85 L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            999999998 44444444457999999999764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.7e-08  Score=71.56  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             cccCCCCCeEEecCceecccCC-hhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCch------h
Q 039327           76 LYHQHDLEDVHLSHIKMNGKFP-NWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV------E  148 (315)
Q Consensus        76 l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------~  148 (315)
                      ...+++|++|++++|+++..-+ ...+..+++|+.|++++|.+............+|+.+++.+|.+......      .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3457777777777777764221 12246677788888888777653222222344677777777777633221      2


Q ss_pred             hhhcCCCceEEE
Q 039327          149 IGDILPSLFSFN  160 (315)
Q Consensus       149 ~~~~~~~L~~L~  160 (315)
                      +...+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            344477888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.8e-08  Score=71.52  Aligned_cols=65  Identities=34%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             cCCCceEEEeecCcCCCCC--CccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCC
Q 039327          152 ILPSLFSFNISTNALHGSI--PSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG  217 (315)
Q Consensus       152 ~~~~L~~L~l~~n~~~~~~--~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  217 (315)
                      .+++|++|++++|.++...  +..+..+++|+.|++++|.+. .++...+.....++.+++.+|.+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            3667777777777766322  233455666666666666665 3333222223345566666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.05  E-value=8.5e-07  Score=64.97  Aligned_cols=39  Identities=8%  Similarity=0.028  Sum_probs=18.4

Q ss_pred             cccccceeEeecCCCcCc----CcCCCcCCCCccEEEcccCcC
Q 039327          103 NNAKLETLFLINDSIGGP----FRLPIHPHRRLRFLDVSNNNF  141 (315)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~  141 (315)
                      ..+.|++|++++|.+.+.    +..++...+.|++|+++++..
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            344455555555544431    122344455555665555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.99  E-value=1.9e-06  Score=63.01  Aligned_cols=92  Identities=21%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             CCcccEEEccCCCCCC----cccccccCCCCCCEEEcCCCccccc----cccccccCCCCcEEEccCCccccccCCCCcc
Q 039327          202 CVNLEFLALSNNNLKG----HMFCRNFNLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNNNSLSDITMPKNHL  273 (315)
Q Consensus       202 ~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l  273 (315)
                      .+.|+.|++++|.+..    .....+...+.|++|++++|.+++.    +...+...++|++|++.+|++..+.   ...
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g---~~~  119 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG---NQV  119 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC---HHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCcc---HHH
Confidence            4556666666666542    1223344566677777777776643    2234555667777777766544211   000


Q ss_pred             ccCCchhhcccCCCCEEecccCc
Q 039327          274 EGPIPVEFCQLYSLHILDISDNN  296 (315)
Q Consensus       274 ~~~~~~~l~~~~~L~~L~l~~n~  296 (315)
                      ...+..++...++|+.|+++.+.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCCC
Confidence            01234556667777777776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.63  E-value=6.4e-06  Score=60.06  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             CCCcccceeeccc-ccccc-----cccccccCCCCccccEEEEeccCCCCccc----cccccccCCCCCeEEecCceecc
Q 039327           25 FNHSRLKRLWAYN-NEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVT----FPKFLYHQHDLEDVHLSHIKMNG   94 (315)
Q Consensus        25 ~~~~~L~~L~l~~-~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~   94 (315)
                      .+.|.|++|++++ +.++.     +...+.+  .+  +|++|++ +++.++..    +.+.+...+.++.++++++.+..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~--n~--~L~~L~L-s~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKT--NT--YVKKFSI-VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTT--CC--SCCEEEC-TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhc--CC--ccCeeec-cCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            3556777777776 34443     2222222  22  6777777 66666544    23344556777777777776654


Q ss_pred             cCChhh---hhcccccceeEee--cCCCcC----cCcCCCcCCCCccEEEcccCc
Q 039327           95 KFPNWL---LENNAKLETLFLI--NDSIGG----PFRLPIHPHRRLRFLDVSNNN  140 (315)
Q Consensus        95 ~~~~~~---~~~~~~L~~L~l~--~~~~~~----~~~~~l~~~~~L~~L~l~~~~  140 (315)
                      .....+   +...++|+.+++.  +|.+.+    .+...+...+.|+.|++..+.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            322221   2455667765553  444543    223345567778888776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.51  E-value=1.2e-05  Score=58.53  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             ccEEEEeccC-CCCccc----cccccccCCCCCeEEecCceecccCChhh---hhcccccceeEeecCCCcCc----CcC
Q 039327           56 QLQSLLLSSG-YGDGVT----FPKFLYHQHDLEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGGP----FRL  123 (315)
Q Consensus        56 ~L~~L~l~~~-~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----~~~  123 (315)
                      .|++|++ ++ +.++..    +..++...++|++|++++|.++......+   +...++++.++++++.+...    +..
T Consensus        18 ~L~~L~L-~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          18 DLEEVNL-NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TCCEEEC-TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCcEEEc-CCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            7888888 54 455543    34455567888888888887765333222   35567888888888877542    234


Q ss_pred             CCcCCCCccEEEcc--cCcCCCC----CchhhhhcCCCceEEEeecCc
Q 039327          124 PIHPHRRLRFLDVS--NNNFQGH----IPVEIGDILPSLFSFNISTNA  165 (315)
Q Consensus       124 ~l~~~~~L~~L~l~--~~~~~~~----~~~~~~~~~~~L~~L~l~~n~  165 (315)
                      .+...++|+.+++.  ++.+.+.    +...+. ..++|++|++..+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~-~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHH-hCCCcCEEeCcCCC
Confidence            56677888876664  3444321    122222 36788888876653