Citrus Sinensis ID: 039365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MFYDHDHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARALAAANRADSAVPSAGISSKV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfydhdhdggmymppgssmpdgsmnststdmgMMMHMTFYWGKDVLVLFsgwperslGMYILALIFVFLLGFAVEVLsispqlvgssSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARALAAANradsavpsagisskv
Flexible Loop (DISEMBL)
mfydhdhdggMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARALAAANradsavpsagisskv
Low Complexity Region (SEG)
MFYDHDHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKaralaaanradsaVPSAGISSKV
Disordered region (IsUnstruct)
********************************MMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARALAA*****************
Disordered Region (DISOPRED)
************************************MTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKAR**************AGIS***
Disordered Region (DISEMBL)
MFYDHDHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARALAA*****************
Disordered Region (DISPRO)
*****************************DMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARA********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFYDHDHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARALAAANRADSAVPSAGISSKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q8GWP3	145	Copper transporter 6 OS=A	yes	no	0.867	0.951	0.513	1e-29
Q39065	170	Copper transporter 1 OS=A	no	no	0.962	0.9	0.470	2e-26
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.603	0.607	0.561	1e-22
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.761	0.801	0.471	7e-22
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.672	0.737	0.441	2e-19
Q94EE4	161	Copper transporter 1 OS=O	yes	no	0.817	0.807	0.445	5e-19
Q7XTF8	184	Copper transporter 6 OS=O	no	no	0.761	0.657	0.408	4e-16
Q60EN8	151	Copper transporter 2 OS=O	no	no	0.647	0.682	0.439	3e-15
Q10KT6	183	Copper transporter 4 OS=O	no	no	0.672	0.584	0.416	1e-10
Q93VM8	146	Copper transporter 5 OS=A	no	no	0.754	0.821	0.349	6e-10

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 96/148 (64%), Gaps = 10/148 (6%)

Query: 6   DHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALI 65
           DH     MPP S  P   +N T+++M +MMHMTF+WGK+  +LFSGWP  SLGMY+L LI
Sbjct: 2   DHGN---MPPSS--PSSMVNHTNSNM-IMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLI 55

Query: 66  FVFLLGFAVEVLSISPQL--VGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIV 123
            VFLL   VE L+ S  L   GS+S A  L+Q  VY ++  LAY+VML+VMSFN GVFIV
Sbjct: 56  VVFLLAVIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIV 115

Query: 124 AVAGHGAGFLLVKARALAAANRADSAVP 151
           A+AG   GF+L  + A    N +D   P
Sbjct: 116 AIAGFAVGFMLFGSTAF--KNPSDDEKP 141

Involved in the transport of copper.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 99/168 (58%), Gaps = 15/168 (8%)

Query: 4   DHDHDGGM-------YMPPGSSMPDGSMNSTSTDMGMMMHM--TFYWGKDVLVLFSGWPE 54
           DHDH  GM          P S M +GSMN       M M M  TF+WGK+  VLFSGWP 
Sbjct: 2   DHDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPG 61

Query: 55  RSLGMYILALIFVFLLGFAVEVLSISPQLVGSS----SMAALLIQACVYVVRMALAYMVM 110
            S GMY L LIFVF L    E L+ S  L GS+    + AA LIQ  VY +R+ LAY+VM
Sbjct: 62  TSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVM 121

Query: 111 LSVMSFNLGVFIVAVAGHGAGFLLVKARAL--AAANRADSAVPSAGIS 156
           L+VMSFN GVF+VA+AGH  GF+L  ++     + +R  + VP +G +
Sbjct: 122 LAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGCA 169

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 70/98 (71%), Gaps = 2/98 (2%)

Query: 39  FYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISP--QLVGSSSMAALLIQA 96
           F+WGK+  VLFSGWP  S GMY L LI +FLL    E L+ SP  ++ GS++ AA L Q 
Sbjct: 34  FFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQT 93

Query: 97  CVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLL 134
            VY ++  L+Y+VML+VMSFN GVFIVA+AG+G GF L
Sbjct: 94  AVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFL 131

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 2/123 (1%)

Query: 32  GMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLV-GSSSMA 90
           G MMHMTF+WGK   VLF GWP  SL MY + L  +F++    E LS    +  G +S+ 
Sbjct: 27  GGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLG 86

Query: 91  ALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARAL-AAANRADSA 149
             L+Q  VY VR AL+Y+VML+VMSFN GVF+ A+AG G GF++  +RA  A ++ + + 
Sbjct: 87  GGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAFRATSSNSHTE 146

Query: 150 VPS 152
           V S
Sbjct: 147 VQS 149

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 4/111 (3%)

Query: 34  MMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLS----ISPQLVGSSSM 89
           ++H TFYWG +  VLFSGWP    GMY LALIFVF L F  E L+     S    G+  +
Sbjct: 29  LLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKL 88

Query: 90  AALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARAL 140
           A +  +  +Y V+   +Y+V+L+V+SFN GVF+ A+ GH  GF + + RA 
Sbjct: 89  AKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAF 139

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 76/137 (55%), Gaps = 7/137 (5%)

Query: 7   HDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIF 66
           HD G   PP +             M    HMTF+WGK+  VLF+ WP    GMY LALIF
Sbjct: 6   HDMGGMSPPAAGAAAQGGMGAMKSM-RYTHMTFFWGKNSEVLFTMWPGTRGGMYALALIF 64

Query: 67  VFLLGFAVEVLS------ISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGV 120
           VF L   VE L           L   +  A  L +A V+ VR+ +AY++ML++MSFN GV
Sbjct: 65  VFALAVIVEFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFNGGV 124

Query: 121 FIVAVAGHGAGFLLVKA 137
           F+VAVAGH AGFL  +A
Sbjct: 125 FLVAVAGHAAGFLAFRA 141

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 71/137 (51%), Gaps = 16/137 (11%)

Query: 30  DMGMMMHMTFYWGKDVLVLFSGWP-ERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSS 88
            M MMMHMTF+W    +VL  GWP ER  GMY L L+FV  L    E LS+  + +    
Sbjct: 33  KMAMMMHMTFFWSDRAVVLIRGWPGERGAGMYALCLLFVLALAALTEGLSVLSRRLARRG 92

Query: 89  MAALL---------------IQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFL 133
             A                 +   V+  RM +AY+VML+VMSFN+GV + AVAGH  GFL
Sbjct: 93  GGAASSDGGRPAPAPASSAALLTAVHAARMGMAYLVMLAVMSFNVGVLLAAVAGHALGFL 152

Query: 134 LVKARALAAANRADSAV 150
           L ++R   AA      V
Sbjct: 153 LARSRVRPAARDGGGGV 169

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 4/107 (3%)

Query: 35  MHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSIS----PQLVGSSSMA 90
           MHMTF+WGK+  VLF+ WP    GMY LA++F+F L   +E               +  A
Sbjct: 23  MHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRA 82

Query: 91  ALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKA 137
           A  ++  V+ VR+ +AY++ML++MSFN GVF+  VAGH AGFL  +A
Sbjct: 83  AAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRA 129

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica GN=COPT4 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 64/120 (53%), Gaps = 13/120 (10%)

Query: 31  MGMMMHMTFYWGKDVLVLFSGWP-ERS-LGMYILALIFVFLLGFAVEV-----------L 77
           M M   M+F WG   +VLF  WP +R+ +GMY L L+ V  L    E            L
Sbjct: 28  MPMTTGMSFTWGHRAVVLFPRWPGDRAGVGMYFLCLLLVLALAALAEALSAASRRLDLDL 87

Query: 78  SISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKA 137
            +S            L+ A V+  RM LAY+VML+VMSFN GV + AVAGH AGFLL ++
Sbjct: 88  DLSRSRGRRRRRRQQLLAAGVHAARMGLAYLVMLAVMSFNAGVLLAAVAGHAAGFLLARS 147

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VM8|COPT5_ARATH Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 67/146 (45%), Gaps = 26/146 (17%)

Query: 34  MMHMTFYWGKDVLVLFSGWPERSLGMYILALI--FVF------LLGFAVEVLSIS----- 80
           MMHMTFYWG    +LF  W   S   YIL LI  FVF      L    ++  S+S     
Sbjct: 1   MMHMTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRA 60

Query: 81  -PQLVGSSSMAALLIQAC------------VYVVRMALAYMVMLSVMSFNLGVFIVAVAG 127
            P    SS ++A LI               ++ V  A+ Y++ML+ MSFN GVFI  V G
Sbjct: 61  PPPPRSSSGVSAPLIPKSGTRSAAKAASVLLFGVNAAIGYLLMLAAMSFNGGVFIAIVVG 120

Query: 128 HGAGFLLVKARALAAANRADSAVPSA 153
             AG+ + ++    A    D   P A
Sbjct: 121 LTAGYAVFRSDDGGADTATDDPCPCA 146

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
224090829	148	copper transporter [Populus trichocarpa]	0.874	0.939	0.585	9e-38
351726433	146	uncharacterized protein LOC100527849 [Gl	0.880	0.958	0.566	7e-35
356496102	144	PREDICTED: copper transporter 6-like iso	0.880	0.972	0.520	1e-32
388517907	145	unknown [Medicago truncatula]	0.855	0.937	0.506	2e-31
388518643	145	unknown [Medicago truncatula]	0.855	0.937	0.5	9e-31
224104365	155	copper transporter [Populus trichocarpa]	0.817	0.838	0.565	2e-29
30683324	145	Ctr copper transporter family [Arabidops	0.867	0.951	0.513	7e-28
388522303	137	unknown [Medicago truncatula]	0.729	0.846	0.529	4e-27
449460397	150	PREDICTED: copper transporter 6-like [Cu	0.842	0.893	0.538	5e-27
1082054	169	copper transporter protein [Arabidopsis	0.962	0.905	0.479	4e-25

>gi|224090829|ref|XP_002309099.1| copper transporter [Populus trichocarpa] gi|222855075|gb|EEE92622.1| copper transporter [Populus trichocarpa]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/147 (58%), Positives = 104/147 (70%), Gaps = 8/147 (5%)

Query: 5   HDHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILAL 64
           HDHD    M PGS M D  M+ + +DM  MMHM+FYWGKD ++LFSGWP  SLGMY+LA 
Sbjct: 5   HDHDS---MDPGS-MSDSGMHMSPSDM--MMHMSFYWGKDAIILFSGWPNGSLGMYMLAF 58

Query: 65  IFVFLLGFAVEVLSISP--QLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFI 122
             VFLL  A+E+ S+SP  +    + +A  LIQ CVY VRM  AYMVML+VMSFNLG+FI
Sbjct: 59  FCVFLLAAAIEIFSVSPTAKRGTHNPIAGALIQTCVYAVRMGFAYMVMLAVMSFNLGIFI 118

Query: 123 VAVAGHGAGFLLVKARALAAANRADSA 149
            AVAGH  GF LVK RALA A + ++A
Sbjct: 119 AAVAGHTVGFFLVKVRALAIAYKNETA 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726433|ref|NP_001238406.1| uncharacterized protein LOC100527849 [Glycine max] gi|255633370|gb|ACU17042.1| unknown [Glycine max]

 Score =  152 bits (383), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 96/143 (67%), Gaps = 3/143 (2%)

Query: 11  MYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLL 70
           MYM PG  M   SM++   +M MMMH +FYWGKD +VLF  WPE ++GMYILALIFVF L
Sbjct: 1   MYMSPGQDM--SSMSNDRNNMSMMMHNSFYWGKDAIVLFPRWPENNVGMYILALIFVFFL 58

Query: 71  GFAVEVLSISPQLV-GSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHG 129
             AVEVLS  P L  G+S +   LIQA V + R+   YMVML+VMSFN G+FI AV GH 
Sbjct: 59  AMAVEVLSNQPLLKPGTSPLVGGLIQAGVRLFRIGFVYMVMLAVMSFNAGIFIAAVVGHT 118

Query: 130 AGFLLVKARALAAANRADSAVPS 152
            GF + K RAL+ ANR D    S
Sbjct: 119 LGFFVAKFRALSIANRKDKGSSS 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496102|ref|XP_003516909.1| PREDICTED: copper transporter 6-like isoform 1 [Glycine max] gi|356496104|ref|XP_003516910.1| PREDICTED: copper transporter 6-like isoform 2 [Glycine max]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 95/144 (65%), Gaps = 4/144 (2%)

Query: 11  MYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLL 70
           M M PG  MP   M++      M MHM+ YWGKD +VLFSGWP+ S+G YILA++FVF L
Sbjct: 1   MEMHPGDDMP---MSNGRDHNSMKMHMSLYWGKDAIVLFSGWPKHSVGHYILAILFVFFL 57

Query: 71  GFAVEVLSISPQLV-GSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHG 129
               EV+S  P +  G++ +   L QA  YV R++L Y+VML+VMSFNLG+FI AVAGH 
Sbjct: 58  AIIAEVVSNKPNIKRGTNPIIGGLAQATFYVFRISLLYLVMLAVMSFNLGIFIAAVAGHT 117

Query: 130 AGFLLVKARALAAANRADSAVPSA 153
            GF L K+RALA ANR   +   A
Sbjct: 118 LGFFLAKSRALALANREQESSSDA 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517907|gb|AFK47015.1| unknown [Medicago truncatula]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 10/146 (6%)

Query: 10  GMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFL 69
           GM M PG SMP      ++  M M M M+F+WGK+ +VLFSGWP  SLGMYILA++FVF+
Sbjct: 2   GMPMAPGQSMP-----MSNGTMIMNMQMSFFWGKNAIVLFSGWPNNSLGMYILAILFVFI 56

Query: 70  LGFAVEVLSISPQLV-GSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGH 128
           L  A EVLS  P +  G++ +   LIQ+ VY  R++  Y++ML+VMSFN+G+FI AV GH
Sbjct: 57  LALAAEVLSNQPSIKRGTNPLKGGLIQSGVYFFRISFIYLLMLAVMSFNVGIFIAAVLGH 116

Query: 129 GAGFLLVKARALAAAN----RADSAV 150
             GF + ++RA+A AN    R+DSA 
Sbjct: 117 SLGFFVARSRAIAVANGEDQRSDSAT 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518643|gb|AFK47383.1| unknown [Medicago truncatula]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 10/146 (6%)

Query: 10  GMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFL 69
           GM M PG SMP      ++  M M M M+F+WGK+ +VLFSGWP  SLGMYILA++FVF+
Sbjct: 2   GMPMAPGQSMP-----MSNGTMIMNMQMSFFWGKNAIVLFSGWPNNSLGMYILAILFVFI 56

Query: 70  LGFAVEVLSISPQLV-GSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGH 128
           L  A EVLS  P +  G++ +   L Q+ VY  R++  Y++ML+VMSFN+G+FI AV GH
Sbjct: 57  LALAAEVLSNQPSIKRGTNPLKGGLTQSGVYFFRISFIYLLMLAVMSFNVGIFIAAVFGH 116

Query: 129 GAGFLLVKARALAAAN----RADSAV 150
             GF + ++RA+A AN    R+DSA 
Sbjct: 117 SLGFFVARSRAIAVANGEDQRSDSAT 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/138 (56%), Positives = 96/138 (69%), Gaps = 8/138 (5%)

Query: 4   DHDHDGGMYMPPGSSMPDGSMNSTS-TDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYIL 62
           D DH    ++P  S  P   MN T   D  MM HMTF+WGKD L+LFSGWP  S GMY+L
Sbjct: 2   DPDH----HLPGMSPPPSTPMNGTDGMDHKMMTHMTFFWGKDTLILFSGWPGTSTGMYVL 57

Query: 63  ALIFVFLLGFAVEVLSISPQLV--GSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGV 120
           AL+F+F+L   VE LS   +LV  GS+++AA LIQA ++ VR+ LAYMVML+VMSFN GV
Sbjct: 58  ALVFIFVLAVLVEWLSHC-RLVKPGSNNVAAGLIQALMHAVRVGLAYMVMLAVMSFNGGV 116

Query: 121 FIVAVAGHGAGFLLVKAR 138
           FIVAVAGH  GF +  +R
Sbjct: 117 FIVAVAGHLVGFFIFGSR 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683324|ref|NP_850091.1| Ctr copper transporter family [Arabidopsis thaliana] gi|75151022|sp|Q8GWP3.1|COPT6_ARATH RecName: Full=Copper transporter 6; Short=AtCOPT6 gi|26452466|dbj|BAC43318.1| putative copper transport protein [Arabidopsis thaliana] gi|28827258|gb|AAO50473.1| putative copper transport protein [Arabidopsis thaliana] gi|330252820|gb|AEC07914.1| Ctr copper transporter family [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 96/148 (64%), Gaps = 10/148 (6%)

Query: 6   DHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALI 65
           DH     MPP S  P   +N T+++M +MMHMTF+WGK+  +LFSGWP  SLGMY+L LI
Sbjct: 2   DHGN---MPPSS--PSSMVNHTNSNM-IMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLI 55

Query: 66  FVFLLGFAVEVLSISPQL--VGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIV 123
            VFLL   VE L+ S  L   GS+S A  L+Q  VY ++  LAY+VML+VMSFN GVFIV
Sbjct: 56  VVFLLAVIVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIV 115

Query: 124 AVAGHGAGFLLVKARALAAANRADSAVP 151
           A+AG   GF+L  + A    N +D   P
Sbjct: 116 AIAGFAVGFMLFGSTAF--KNPSDDEKP 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522303|gb|AFK49213.1| unknown [Medicago truncatula]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 80/117 (68%), Gaps = 1/117 (0%)

Query: 33  MMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVL-SISPQLVGSSSMAA 91
           M MHM  YWGKD ++LF GWP +SLGMYILAL FVF L   VE L + S    G++ +  
Sbjct: 11  MKMHMNLYWGKDAIILFPGWPNQSLGMYILALSFVFFLALVVEFLPNKSTIKQGTNHIKG 70

Query: 92  LLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARALAAANRADS 148
            LIQA +Y  R++  Y+VML+VMSFN+G+FI AV GH  GF LVK+  + AAN+  +
Sbjct: 71  GLIQAIIYFFRISFLYLVMLAVMSFNIGIFIAAVVGHTIGFFLVKSHDIFAANKEQN 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460397|ref|XP_004147932.1| PREDICTED: copper transporter 6-like [Cucumis sativus] gi|449519529|ref|XP_004166787.1| PREDICTED: copper transporter 6-like [Cucumis sativus]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 97/143 (67%), Gaps = 9/143 (6%)

Query: 15  PGSSMPDG--SMNSTSTDMGMM------MHMTFYWGKDVLVLFSGWPERSLGMYILALIF 66
           P  S P+G  SMN+++ D  +M      M M+FYWGKD ++LF  WP+ SLG+YILA  F
Sbjct: 5   PNMSPPNGNTSMNNSTGDSPIMSTKMMNMQMSFYWGKDAVILFPRWPKESLGLYILAFFF 64

Query: 67  VFLLGFAVEVLS-ISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAV 125
           +FLL FAVE LS   P  +G S +A+  +QA VY  R  LAY+VML+VMSFN+G+FI AV
Sbjct: 65  IFLLAFAVEFLSHTPPNKLGKSPLASASVQAFVYAFRTGLAYLVMLAVMSFNIGIFIAAV 124

Query: 126 AGHGAGFLLVKARALAAANRADS 148
           AGH  GF +VK R L AA R DS
Sbjct: 125 AGHTLGFFVVKLRVLTAAKRTDS 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1082054|emb|CAA90018.1| copper transporter protein [Arabidopsis thaliana]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 100/167 (59%), Gaps = 14/167 (8%)

Query: 4   DHDHDGGMYMPPGSS------MPDGSMNSTSTDMGMMMHM--TFYWGKDVLVLFSGWPER 55
           DHDH  GM  P  SS      M +GSMN       M M M  TF+WGK+  VLFSGWP  
Sbjct: 2   DHDHMHGMPPPSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 61

Query: 56  SLGMYILALIFVFLLGFAVEVLSISPQLVGSS----SMAALLIQACVYVVRMALAYMVML 111
           S GMY L LIFVF L    E L+ S  L GS+    + AA LIQ  VY +R+ LAY+VML
Sbjct: 62  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 121

Query: 112 SVMSFNLGVFIVAVAGHGAGFLLVKARAL--AAANRADSAVPSAGIS 156
           +VMSFN GVF+VA+AGH  GF+L  ++     + +R  + VP +G +
Sbjct: 122 AVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGCA 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.823	0.770	0.548	3.3e-31
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.811	0.816	0.536	1.1e-30
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.748	0.820	0.564	2.1e-29
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.786	0.776	0.470	2.1e-22
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.647	0.682	0.509	5.5e-22
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.647	0.710	0.439	9.2e-20
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.622	0.655	0.456	5.1e-19
TAIR|locus:2180474	146	COPT5 "copper transporter 5" [	0.220	0.239	0.567	2.9e-11
UNIPROTKB|A6QR68	189	SLC31A1 "Uncharacterized prote	0.477	0.402	0.406	1.4e-10
ZFIN|ZDB-GENE-040415-3	188	slc31a1 "solute carrier family	0.515	0.436	0.367	9.6e-10

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 79/144 (54%), Positives = 92/144 (63%)

Query:     4 DHDHDGGMYMP-------PGSSMPDGSMNSTSTD--MGMMMHMTFYWGKDVLVLFSGWPE 54
             DHDH  GM  P       P S M +GSMN       M MMMHMTF+WGK+  VLFSGWP 
Sbjct:     2 DHDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPG 61

Query:    55 RSLGMYILALIFVFLLGFAVEVLSISPQLVGSS----SMAALLIQACVYVVRMALAYMVM 110
              S GMY L LIFVF L    E L+ S  L GS+    + AA LIQ  VY +R+ LAY+VM
Sbjct:    62 TSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVM 121

Query:   111 LSVMSFNLGVFIVAVAGHGAGFLL 134
             L+VMSFN GVF+VA+AGH  GF+L
Sbjct:   122 LAVMSFNAGVFLVALAGHAVGFML 145

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 73/136 (53%), Positives = 90/136 (66%)

Query:     1 MFYDHDHDGGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMY 60
             M +DH HD    MPP S       N T+  M MMMHMTF+WGK+  VLFSGWP  S GMY
Sbjct:     1 MDHDHMHD----MPPPSPSSSSMSNHTTPHM-MMMHMTFFWGKNTEVLFSGWPGTSSGMY 55

Query:    61 ILALIFVFLLGFAVEVLSISP--QLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNL 118
              L LI +FLL    E L+ SP  ++ GS++ AA L Q  VY ++  L+Y+VML+VMSFN 
Sbjct:    56 ALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNA 115

Query:   119 GVFIVAVAGHGAGFLL 134
             GVFIVA+AG+G GF L
Sbjct:   116 GVFIVAIAGYGVGFFL 131

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 70/124 (56%), Positives = 88/124 (70%)

Query:    13 MPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGF 72
             MPP S  P   +N T+++M +MMHMTF+WGK+  +LFSGWP  SLGMY+L LI VFLL  
Sbjct:     6 MPPSS--PSSMVNHTNSNM-IMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAV 62

Query:    73 AVEVLSISPQLVG--SSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGA 130
              VE L+ S  L G  S+S A  L+Q  VY ++  LAY+VML+VMSFN GVFIVA+AG   
Sbjct:    63 IVEWLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAV 122

Query:   131 GFLL 134
             GF+L
Sbjct:   123 GFML 126

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 63/134 (47%), Positives = 80/134 (59%)

Query:     7 HD-GGMYMPPGSSMPDGSMNSTSTDMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALI 65
             HD GGM  P   +   G M +  + M    HMTF+WGK+  VLF+ WP    GMY LALI
Sbjct:     6 HDMGGMSPPAAGAAAQGGMGAMKS-M-RYTHMTFFWGKNSEVLFTMWPGTRGGMYALALI 63

Query:    66 FVFLLGFAVEVL------SISPQLVGSSSMAALLIQACVYVVRMALAYMVMLSVMSFNLG 119
             FVF L   VE L      +    L   +  A  L +A V+ VR+ +AY++ML++MSFN G
Sbjct:    64 FVFALAVIVEFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFNGG 123

Query:   120 VFIVAVAGHGAGFL 133
             VF+VAVAGH AGFL
Sbjct:   124 VFLVAVAGHAAGFL 137

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 53/104 (50%), Positives = 69/104 (66%)

Query:    32 GMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLV-GSSSMA 90
             G MMHMTF+WGK   VLF GWP  SL MY + L  +F++    E LS    +  G +S+ 
Sbjct:    27 GGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLG 86

Query:    91 ALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLL 134
               L+Q  VY VR AL+Y+VML+VMSFN GVF+ A+AG G GF++
Sbjct:    87 GGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMI 130

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 47/107 (43%), Positives = 66/107 (61%)

Query:    34 MMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLS----ISPQLVGSSSM 89
             ++H TFYWG +  VLFSGWP    GMY LALIFVF L F  E L+     S    G+  +
Sbjct:    29 LLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKL 88

Query:    90 AALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVK 136
             A +  +  +Y V+   +Y+V+L+V+SFN GVF+ A+ GH  GF + +
Sbjct:    89 AKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFR 135

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 47/103 (45%), Positives = 67/103 (65%)

Query:    35 MHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLS---ISPQLVGSSS-MA 90
             MHMTF+WGK+  VLF+ WP    GMY LA++F+F L   +E      +  +L    +  A
Sbjct:    23 MHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRA 82

Query:    91 ALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFL 133
             A  ++  V+ VR+ +AY++ML++MSFN GVF+  VAGH AGFL
Sbjct:    83 AAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFL 125

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2180474 COPT5 "copper transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 21/37 (56%), Positives = 22/37 (59%)

Query:    34 MMHMTFYWGKDVLVLFSGWPERSLGMYILALI--FVF 68
             MMHMTFYWG    +LF  W   S   YIL LI  FVF
Sbjct:     1 MMHMTFYWGIKATILFDFWKTDSWLSYILTLIACFVF 37

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015680 "intracellular copper ion transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|A6QR68 SLC31A1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 102 (41.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 35/86 (40%), Positives = 44/86 (51%)

Query:     5 HDHDGGMYMP----PGSSMPDGSMNSTSTD-----MGMMMHMTFYWG-KDVLVLFSGWPE 54
             H H  GM M       S+MP     +TS+D     M MMM MTFY+G K+V +LFSG   
Sbjct:     3 HSHIMGMNMDMSGGDNSTMPPHHHPTTSSDHSHDHMMMMMPMTFYFGFKNVELLFSGLVI 62

Query:    55 RSLGMYILALIFVFLLGFAVEVLSIS 80
              + G    A + VFLL    E L I+
Sbjct:    63 NTAGEMAGAFVAVFLLAMFYEGLKIA 88

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-040415-3 slc31a1 "solute carrier family 31 (copper transporters), member 1" [Danio rerio (taxid:7955)]

 Score = 99 (39.9 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
 Identities = 32/87 (36%), Positives = 43/87 (49%)

Query:     3 YDHDHDGGMYMP-PGSSMPDGSMNSTSTDMG---MMMHMTFYWG-KDVLVLFSGWPERSL 57
             + H H     MP P S    G + +T    G   MMM MTFY+G K+V +LF+G    + 
Sbjct:     5 HSHHHVEETTMPSPASGDHGGHLTTTGNGHGDHMMMMQMTFYFGYKNVELLFAGLVINTP 64

Query:    58 GMYILALIFVFLLGFAVEVLSISPQLV 84
             G    A I VFLL    E L I  +++
Sbjct:    65 GEMAGACIGVFLLAVLYEGLKIGREVL 91

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0042221 "response to chemical stimulus" evidence=IDA

GO:0042539 "hypotonic salinity response" evidence=IDA

GO:0006825 "copper ion transport" evidence=ISS

GO:0046688 "response to copper ion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWP3	COPT6_ARATH	No assigned EC number	0.5135	0.8679	0.9517	yes	no
Q94EE4	COPT1_ORYSJ	No assigned EC number	0.4452	0.8176	0.8074	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0023023701 copper transporter (148 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	8e-25

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score = 91.4 bits (228), Expect = 8e-25
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 35  MHMTFYWG-KDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQLVGSSSMAALL 93
           M M F WG KD  VLFSGW   + GMY  + I +FLL    E L    + +   S+   L
Sbjct: 1   MSMLFNWGTKDTCVLFSGWHITTAGMYAGSCIAIFLLAILYEGLKRVRRKLERMSLFQHL 60

Query: 94  IQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLL 134
           I+A ++ +++ L+Y++ML VM++N G+F+  V G   G+ L
Sbjct: 61  IRALLHFLQVGLSYLLMLIVMTYNGGLFLAVVLGAALGYFL 101

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG3386	155	consensus Copper transporter [Inorganic ion transp	100.0
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	100.0
PF11446	55	DUF2897: Protein of unknown function (DUF2897); In	90.73
COG2991	77	Uncharacterized protein conserved in bacteria [Fun	81.62

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4e-35  Score=229.20  Aligned_cols=111  Identities=34%  Similarity=0.534  Sum_probs=101.3

Q ss_pred             CCCceeeeEEEccceeEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHhcccc---------cC----------Ccc--
Q 039365           30 DMGMMMHMTFYWGKDVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQL---------VG----------SSS--   88 (159)
Q Consensus        30 ~m~~~M~M~F~~~~~~~lLF~~W~~~s~~~y~lsci~vf~lav~~E~L~~~R~~---------~~----------~~~--   88 (159)
                      .+.|+|.|+|||++++++||++|+++|+++|+++|+++|++|+++|+||+.|+.         +.          .+.  
T Consensus        11 ~~~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~   90 (155)
T KOG3386|consen   11 GQTMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLL   90 (155)
T ss_pred             cCCCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhh
Confidence            336899999999999999999999999999999999999999999999998864         10          011  


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhcchhc
Q 039365           89 -MAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLVKARAL  140 (159)
Q Consensus        89 -~~~~l~~s~l~~v~~~lsYlLMLivMTfN~~lflaVvlG~~iGy~iFg~~~~  140 (159)
                       ...|++|+++|.+|+++||+|||++||||+|+++||++|+++||++|+....
T Consensus        91 ~~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~Lavv~Ga~~G~flF~~~~~  143 (155)
T KOG3386|consen   91 NSASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLFLAVVLGAGVGYFLFGSLTF  143 (155)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhheeeeccc
Confidence             5679999999999999999999999999999999999999999999999987

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=100.00  E-value=1.4e-34  Score=218.99  Aligned_cols=101  Identities=36%  Similarity=0.579  Sum_probs=58.6

Q ss_pred             eeeEEEccc-eeEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHhcccc-------c-----------C----------
Q 039365           35 MHMTFYWGK-DVLVLFSGWPERSLGMYILALIFVFLLGFAVEVLSISPQL-------V-----------G----------   85 (159)
Q Consensus        35 M~M~F~~~~-~~~lLF~~W~~~s~~~y~lsci~vf~lav~~E~L~~~R~~-------~-----------~----------   85 (159)
                      |+|+|||+. ++++||++|+++|.++|+++|+++|++|+++|+||.+|..       +           +          
T Consensus         1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (144)
T PF04145_consen    1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS   80 (144)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred             CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence            799999997 9999999999999999999999999999999999999753       0           0          


Q ss_pred             --------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 039365           86 --------------SSSMAALLIQACVYVVRMALAYMVMLSVMSFNLGVFIVAVAGHGAGFLLV  135 (159)
Q Consensus        86 --------------~~~~~~~l~~s~l~~v~~~lsYlLMLivMTfN~~lflaVvlG~~iGy~iF  135 (159)
                                    +.+.+.|++|+++|++|++++|+|||+|||||+|+|+||++|+++||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~~aVv~G~~~G~~~F  144 (144)
T PF04145_consen   81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLFIAVVLGAGLGYFLF  144 (144)
T ss_dssp             ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHTTSS-GG
T ss_pred             ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHHHHHHHHHHHheeeC
Confidence                          00135689999999999999999999999999999999999999999998

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins

Probab=90.73  E-value=0.18  Score=33.16  Aligned_cols=28  Identities=21%  Similarity=0.151  Sum_probs=24.7

Q ss_pred             HhhhhHHHHHHHHHHHHhhhhhcchhcc
Q 039365          114 MSFNLGVFIVAVAGHGAGFLLVKARALA  141 (159)
Q Consensus       114 MTfN~~lflaVvlG~~iGy~iFg~~~~~  141 (159)
                      |+.|+|+++.+++|..+|.+.-=+++.+
T Consensus         1 ~~~~~wlIIviVlgvIigNia~LK~sAk   28 (55)
T PF11446_consen    1 STWNPWLIIVIVLGVIIGNIAALKYSAK   28 (55)
T ss_pred             CcchhhHHHHHHHHHHHhHHHHHHHhcc
Confidence            6899999999999999999988776654

>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.62  E-value=1.6  Score=30.46  Aligned_cols=35  Identities=17%  Similarity=0.499  Sum_probs=25.6

Q ss_pred             hhHHHHHHHHHHHHhhhhhcchhccc--------ccccCCCCCC
Q 039365          117 NLGVFIVAVAGHGAGFLLVKARALAA--------ANRADSAVPS  152 (159)
Q Consensus       117 N~~lflaVvlG~~iGy~iFg~~~~~~--------~~~~~~~~~~  152 (159)
                      -.++|+.|++|.++||. |++++++.        ..+|++|||-
T Consensus         7 tFg~Fllvi~gMsiG~I-~krk~I~GSCGGi~alGi~K~CdC~~   49 (77)
T COG2991           7 TFGIFLLVIAGMSIGYI-FKRKSIKGSCGGIAALGIEKVCDCDE   49 (77)
T ss_pred             HHHHHHHHHHHHhHhhh-eeccccccccccHHhhccchhcCCCC
Confidence            35789999999999986 45555443        3388888863

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	98.68
2ls4_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.85
2ls2_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.01

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=98.68  E-value=9.9e-12  Score=71.22  Aligned_cols=28  Identities=25%  Similarity=0.609  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039365           91 ALLIQACVYVVRMALAYMVMLSVMSFNL  118 (159)
Q Consensus        91 ~~l~~s~l~~v~~~lsYlLMLivMTfN~  118 (159)
                      +|++|+++|++|+++||+|||++||||+
T Consensus         1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            1 KHLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            4789999999999999999999999996

>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=97.85  E-value=1.9e-08  Score=56.07  Aligned_cols=24  Identities=29%  Similarity=0.526  Sum_probs=22.7

Q ss_pred             hhhHHHHHHHHHHHHhhhhhcchh
Q 039365          116 FNLGVFIVAVAGHGAGFLLVKARA  139 (159)
Q Consensus       116 fN~~lflaVvlG~~iGy~iFg~~~  139 (159)
                      ||+|+++||++|+++||++|++.+
T Consensus         1 YNg~l~iavvlGa~~Gyf~F~~~~   24 (26)
T 2ls4_A            1 YNGYLCIAVAAGAGTGYFLFSWKK   24 (26)
Confidence            899999999999999999998874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00