Citrus Sinensis ID: 039376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MDPSKPASSDLSKNDNKINEMKPMNSSQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCNTLSSNMHIF
Secondary Structure (PSIPRED)
cccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHccccccEEEEcccHHHHHHHccccccHHccccccccccHEEcccHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHcccHHHHHHcccccccHHHHHHcccHHHHHHHHHHccccccHHHHHccccccccHHHHHHHcccHHHHHHHHcccccHHcccccccccHHHHHHHcccHHHHHHHHHccccHHcccccccccHHHcccccHHEHEHEHcccHccccccccccccccc
Coil and Loop (DISEMBL)
mdpskpassdlskndnkinemkpmnssqpssrlldsknEDEIVKMKqkdfaqpssklvvgkkedeitemkpandpiievksherqQIKQVKTSEDWFREMVETGVkvdlgehpqLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLdmispldleetdtsggtpltsaaiVGNTKAAKILVKYNKnlpnmrnrigqcpihcaarsghRETVEYLLSVTgveeedshekysnpfageCGLKLLEILIEFNFLgqytcntlssnmhif
Flexible Loop (DISEMBL)
mdpskpassdlskndnkinemkpmnssqpssrlldSKNEDEIVKMkqkdfaqpssklvvgkkedeitemkpandpiievksherqqikqvktseDWFREMVETgvkvdlgehpqlrralvrkdWKEVERfisenpdtlyAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEEtdtsggtpltsaaivgnTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCNTLSSNMHIF
Low Complexity Region (SEG)
MDPSKPASSDLSKNDNKINEMKPMNSSQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCNTLSSNMHIF
Disordered region (IsUnstruct)
**********************************************************************************************DWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDL*********PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE*******YSNPFAGECGLKLLEILIEFNFLGQYTCNTL*******
Disordered Region (DISOPRED)
*********************************LDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCNTLSSNMHIF
Disordered Region (DISEMBL)
************KNDNKINEMK************DSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT***********SNPFAGECGLKLLEILIEFNFLGQYTCNTLSSNMHIF
Disordered Region (DISPRO)
******************NEM****SSQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCNTLSS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPSKPASSDLSKNDNKINEMKPMNSSQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCNTLSSNMHIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	no	0.318	0.023	0.367	7e-06
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.318	0.023	0.367	8e-06
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.179	0.027	0.490	9e-06
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.314	0.092	0.336	3e-05
Q3TYL0	343	Putative IQ motif and ank	yes	no	0.204	0.172	0.416	6e-05
Q9XZC0	1413	Alpha-latrocrustotoxin-Lt	N/A	no	0.529	0.108	0.268	0.0002
Q07E15	1645	Cortactin-binding protein	N/A	no	0.200	0.035	0.372	0.0003
Q07E28	1658	Cortactin-binding protein	N/A	no	0.200	0.034	0.372	0.0003
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.179	0.011	0.415	0.0004
Q1RGM2	168	Putative ankyrin repeat p	yes	no	0.211	0.363	0.403	0.0004

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 141 KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAA 200
           + TES  T  H  A+        LL   L+  + +D   T  +G TPL  A+  GNT   
Sbjct: 228 RTTESGFTPLHIAAHYGNVNVATLL---LNRGAAVDF--TARNGITPLHVASKRGNTNMV 282

Query: 201 KILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           K+L+     + + + R G  P+HCAARSGH + VE LL
Sbjct: 283 KLLLDRGGQI-DAKTRDGLTPLHCAARSGHDQVVELLL 319

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.
Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 141 KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAA 200
           + TES  T  H  A+        LL   L+  + +D   T  +G TPL  A+  GNT   
Sbjct: 228 RTTESGFTPLHIAAHYGNVNVATLL---LNRGAAVDF--TARNGITPLHVASKRGNTNMV 282

Query: 201 KILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           K+L+     + + + R G  P+HCAARSGH + VE LL
Sbjct: 283 KLLLDRGGQI-DAKTRDGLTPLHCAARSGHDQVVELLL 319

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 51.2 bits (121), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           TPL  AA +G+T   K+L++ N N PN+    G  P+H AAR GH ETV  LL
Sbjct: 472 TPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALL 523

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            D  G TPL      GN +  K L++    + NM + +G+ P+H AA +GH+E  EYLL 
Sbjct: 264 VDIEGVTPLHHTCFNGNLQLTKRLIELGAKI-NMVDEMGETPLHKAAFNGHKEVCEYLLY 322

Query: 240 V--TGVEEEDSHEKYSNPFAGECG-LKLLEILIEF 271
           +  T ++  DS +  S   A   G L ++++LI +
Sbjct: 323 LDPTMIDCRDSRQSTSLHLAAFNGLLDMVDLLIRY 357

Dictyostelium discoideum (taxid: 44689)

>sp|Q3TYL0|YH010_MOUSE Putative IQ motif and ankyrin repeat domain-containing protein LOC642574 homolog OS=Mus musculus PE=5 SV=2

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
           D+ G TPL+ AA  G T A ++L +   N PN +   G+ P++ AA  GH E VE LL +
Sbjct: 246 DSHGNTPLSEAAAGGQTMAIQLLAELGAN-PNTKGAFGRTPLYRAAFGGHLEAVEELLKI 304

Mus musculus (taxid: 10090)

>sp|Q9XZC0|LCTA_LATTR Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=2 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 11/164 (6%)

Query: 86  QIKQVKTSEDWFREMVETGVKVDL----GEHPQLRRALVRKDWKEVERFISENPDTLYAK 141
            I   + + D+ + ++E G  V++     E   L  A  R+D+  + + + E        
Sbjct: 534 HIASERKNNDFVKFLLEKGADVNVRTFANELTPLHLA-ARQDFTIIVKTLMEKRGIDVNA 592

Query: 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
              +  T  H     N   A  L++E     +P  +     SG TPL  A +  N  AAK
Sbjct: 593 KERAGFTPLHLSITSNSRAARTLINE-----TPAGINIKSNSGLTPLHLAVLQNNLSAAK 647

Query: 202 ILVKYNKNLP-NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE 244
           +LVK NK +  N  +  G  P+H A+  G+ E V+Y  S  G++
Sbjct: 648 VLVKSNKKVKLNEMDNNGMTPLHYASMLGNLEFVKYFTSEQGID 691

Crustacean-selective presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q07E15|CTTB2_MUSPF Cortactin-binding protein 2 OS=Mustela putorius furo GN=CTTNBP2 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
            D +G TPL +AA  G+ K  ++L+ YN N+ N     GQ P++ A ++G++E +++LL
Sbjct: 770 ADKNGFTPLCAAAAQGHFKCVELLIAYNANI-NHAADEGQTPLYLACKNGNKECIKHLL 827

Mustela putorius furo (taxid: 9669)

>sp|Q07E28|CTTB2_NEONE Cortactin-binding protein 2 OS=Neofelis nebulosa GN=CTTNBP2 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
            DT+G TPL +AA  G+ K  ++L+ Y+ N+ N     GQ P++ A ++G++E ++ LL
Sbjct: 770 ADTNGFTPLCAAAAQGHFKCVELLISYDANI-NHAADEGQTPLYLACKNGNKECIQLLL 827

Neofelis nebulosa (taxid: 61452)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           TPL  A+  GN    K+L+     + + + R G  P+HC ARSGH + VE LL
Sbjct: 270 TPLHVASKRGNANMVKLLLDRGAKI-DAKTRDGLTPLHCGARSGHEQVVEMLL 321

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q1RGM2|Y1411_RICBR Putative ankyrin repeat protein RBE_1411 OS=Rickettsia bellii (strain RML369-C) GN=RBE_1411 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   +  G TPL  AA   N + AKIL+KY  +L  + N  G+ PI   ++ G+RE V 
Sbjct: 91  DINAKNGYGDTPLCYAAEKNNFEVAKILIKYGADLT-IHNAKGETPIELFSQYGNREAVN 149

Query: 236 YL 237
           YL
Sbjct: 150 YL 151

Rickettsia bellii (strain RML369-C) (taxid: 336407)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
147826943	327	hypothetical protein VITISV_001418 [Viti	0.553	0.489	0.313	2e-16
147838601	332	hypothetical protein VITISV_008901 [Viti	0.543	0.472	0.307	2e-13
255544802	590	ankyrin repeat-containing protein, putat	0.525	0.257	0.329	2e-13
147843694	289	hypothetical protein VITISV_011483 [Viti	0.730	0.730	0.281	8e-13
147784800	1697	hypothetical protein VITISV_029434 [Viti	0.442	0.075	0.343	1e-12
297737987	1855	unnamed protein product [Vitis vinifera]	0.442	0.069	0.343	1e-12
147822636	216	hypothetical protein VITISV_038214 [Viti	0.539	0.722	0.306	2e-12
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.474	0.173	0.335	2e-12
359494194	626	PREDICTED: uncharacterized protein LOC10	0.442	0.204	0.366	3e-12
356532646	606	PREDICTED: uncharacterized protein LOC10	0.633	0.301	0.285	5e-12

>gi|147826943|emb|CAN68876.1| hypothetical protein VITISV_001418 [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 9/169 (5%)

Query: 106 KVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLL 165
           + DL  + +L +A+V  DWK   + + +NP +  A    +   + H   ++ E  +   +
Sbjct: 103 EADLFYYWELYKAVVNGDWKSASKLLEDNPTSFLAPIRRNDPPMLHIAVDLGE-ASMGFV 161

Query: 166 DEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCA 225
           ++ ++ +    L   D+ G T L +AA+ GN KAAK+LV  N +LPN+ +     P+H A
Sbjct: 162 EKLVEFMPSEALSLQDSDGATALFTAAMAGNIKAAKLLVDKNPSLPNICSYGNLVPLHSA 221

Query: 226 ARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE--ILIEFN 272
            + GH+E   YLLSVT        + Y +PFA + G +LL   +++ FN
Sbjct: 222 LKYGHKELTSYLLSVT------RDDVYPSPFADKPGFELLRRALMVGFN 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838601|emb|CAN65057.1| hypothetical protein VITISV_008901 [Vitis vinifera]

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMIS 173
           +L +A++  DW+   + +  NP    A+F      + H    + E      +++ ++ + 
Sbjct: 117 ELYKAVLNGDWESTSQLLVHNPRLFSARFGTDDSPVLHIAVELGEARM-GFVEKLVEFMG 175

Query: 174 PLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRET 233
             DL   D+ G T L +AA  GN KA K+L   N  LPN+ NR    P+H A + GH+E 
Sbjct: 176 SEDLALRDSDGATALFNAARAGNIKAVKLLENKNPRLPNICNRYDFAPLHTAVKYGHKEL 235

Query: 234 VEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE--ILIEFNFLGQY 277
             YLLSVT     D+   Y  PF+   G++LL   +++ F+ +  Y
Sbjct: 236 TLYLLSVT----RDNEPPY--PFSNSPGIELLRRALMVGFHDVALY 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544802|ref|XP_002513462.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223547370|gb|EEF48865.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 15/167 (8%)

Query: 112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMA---NINEDEAHRLLDEF 168
           H  L +A V   W   +R   E+P  L AK +      F  +A    I    +   +   
Sbjct: 9   HLALYKAAVHGQWITAKRIFDEDPSALTAKISG-----FEEIALYVAITAGHSIEFVQNI 63

Query: 169 LDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS 228
           ++++S   +   +  G   L +AA+VGN +AAKILVK N  L   RN +   P+H AA  
Sbjct: 64  VNLMSEDLIGTVNRDGNNALHAAAMVGNLEAAKILVKKNPTLTQGRNVLNATPLHYAASY 123

Query: 229 GHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG 275
            H+ETV +LL VT        ++Y +PF  + G++LL  LI  +F G
Sbjct: 124 AHQETVRFLLPVT-------RDEYPSPFTDKDGVRLLNSLITADFYG 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843694|emb|CAN79870.1| hypothetical protein VITISV_011483 [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 13/224 (5%)

Query: 55  SKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDLGEHPQ 114
           SK+ + + ++    M  ++ P+ E+       +     S +  RE  E  V   L    +
Sbjct: 21  SKIDIDEHDEGFAIMASSSLPLSEID-ESPNNLNCSSISPNNLRESFEEDVTSCL----E 75

Query: 115 LRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP 174
           L +A++  DWK    F+   P ++ A+      ++ H    +    +   +++ ++ +  
Sbjct: 76  LYQAVLNGDWKIASIFLKCYPKSISARIETDGASVLHIAVELGV-ASMGFVEKLVEFMPS 134

Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
            +L+  D+ G T LTSAA  GN KAAK+LV    +LPN   R    P+H A R GH+E  
Sbjct: 135 EELDLRDSDGATALTSAARAGNIKAAKLLVNKKPSLPNSCQRNNLAPLHSAVRYGHKELT 194

Query: 235 EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE-ILIEFNFLGQY 277
            YLL VT  + + S      PF+   G KLL   L+ F+ +  Y
Sbjct: 195 LYLLGVTRDDVDPS------PFSKSPGFKLLHRALMVFHDVALY 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera]

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 118 ALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDL 177
           A +  DWK  + F+  NP  + A+ T    T  H  A        R ++E + ++ P DL
Sbjct: 181 AALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHT---RFVEELVKLMKPDDL 237

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL 237
              +  G T L  AA  G T+ A+++V  N+ LP +R   G  P++ AA  GH++ V YL
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 238 LSVTGVEEEDSHEK 251
            SVT   EED+  K
Sbjct: 298 YSVT---EEDNLTK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 118 ALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDL 177
           A +  DWK  + F+  NP  + A+ T    T  H  A        R ++E + ++ P DL
Sbjct: 181 AALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHT---RFVEELVKLMKPDDL 237

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL 237
              +  G T L  AA  G T+ A+++V  N+ LP +R   G  P++ AA  GH++ V YL
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 238 LSVTGVEEEDSHEK 251
            SVT   EED+  K
Sbjct: 298 YSVT---EEDNLTK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822636|emb|CAN63937.1| hypothetical protein VITISV_038214 [Vitis vinifera]

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMIS 173
           +L +A++  DW+   + ++++P +  A        + H    + E      +++ ++ + 
Sbjct: 29  ELYKAVLNGDWESASKLLADDPKSFSAPIGTDDSPMLHIAVELGEARM-GFVEKLVEFMP 87

Query: 174 PLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRET 233
              L   D+ G T L +AA  GN KA K+LVK N +LPN+ N     P+H A R GH+E 
Sbjct: 88  SEALALRDSDGATALFNAARAGNIKAVKLLVKNNPSLPNICNHGYLVPLHSALRYGHKEL 147

Query: 234 VEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ 276
             YLLSVT     D+   Y  PF+   G +LL   +   F G+
Sbjct: 148 TLYLLSVT----RDNEHPY--PFSNSPGSELLRRALMVGFHGE 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 109 LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEF 168
           L  +  L  A +  DWK  + F+  NP  + A+ T    T  H  A        R ++E 
Sbjct: 172 LKAYVLLCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHT---RFVEEL 228

Query: 169 LDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS 228
           + ++ P DL   +  G T L  AA  G T+ A+++V  N+ LP +R   G  P++ AA  
Sbjct: 229 VKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALV 288

Query: 229 GHRETVEYLLSVTGVEEEDSHEK 251
           GH++ V YL SVT   EED+  K
Sbjct: 289 GHKDMVRYLYSVT---EEDNLTK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494194|ref|XP_002266127.2| PREDICTED: uncharacterized protein LOC100258383 [Vitis vinifera]

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 3/131 (2%)

Query: 114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRL--LDEFLDM 171
           +L +A++  DW+   + +  NP  L A+F      + H    + E     +  L EF+  
Sbjct: 42  ELYKAVLNGDWERASQLLVHNPQLLSARFGTDDSGILHIAVELGEARMGFVEKLVEFMLR 101

Query: 172 ISPLD-LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
             P + L   D+   T L +AA  GN KA K LVK N+NLPN+ NR    P+H A + GH
Sbjct: 102 EDPSETLALRDSDDATALFNAARAGNIKAVKFLVKKNQNLPNICNRQHFAPLHTAVKYGH 161

Query: 231 RETVEYLLSVT 241
           +E   YLLSVT
Sbjct: 162 KELTLYLLSVT 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532646|ref|XP_003534882.1| PREDICTED: uncharacterized protein LOC100813731 [Glycine max]

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 24/207 (11%)

Query: 42  IVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMV 101
           +V M    F+ PS +L        + +M            H  + I + K      RE +
Sbjct: 21  VVPMASAQFSSPSVELTTSSPPAHVVQMASPQ------PRHPSRHILENK------REYL 68

Query: 102 ETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA 161
           E  +       P  + AL R DW    R I  +   L A  T+  GTL H +A    D+ 
Sbjct: 69  EKCI-------PLYKLAL-RGDWNAARRMIDADTSLLNAAITKEWGTLLHVVAG--TDQV 118

Query: 162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCP 221
           H  +D  + +++P DLE  + +G T    AA  GN + A +++K N  LP +R   G  P
Sbjct: 119 H-FVDLLVKLLNPDDLELKNFNGNTAFCYAAASGNLQIASLMIKKNAGLPKIRGGEGATP 177

Query: 222 IHCAARSGHRETVEYLLSV-TGVEEED 247
            + AA  G  +   +L  + TG+ EED
Sbjct: 178 FYMAALQGKDDMARHLYDLTTGILEED 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.467	0.235	0.312	1.4e-10
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.477	0.489	0.340	2e-10
UNIPROTKB|E1C390	130	DYSFIP1 "Uncharacterized prote	0.245	0.546	0.364	1.9e-05
ASPGD|ASPL0000075867	855	AN8767 [Emericella nidulans (t	0.411	0.139	0.338	2.2e-05
ZFIN|ZDB-GENE-030515-6	112	nrarpa "notch-regulated ankyri	0.276	0.714	0.313	4e-05
POMBASE|SPBP16F5.05c	146	SPBP16F5.05c "ribosome biogene	0.269	0.534	0.325	7.2e-05
ZFIN|ZDB-GENE-030515-7	111	nrarpb "notch-regulated ankyri	0.276	0.720	0.313	8.6e-05
DICTYBASE|DDB_G0287459	986	secG "Arf guanyl-nucleotide ex	0.311	0.091	0.340	0.0002
MGI|MGI:3588184	343	K230010J24Rik "RIKEN cDNA K230	0.217	0.183	0.406	0.00021
UNIPROTKB|G3MYP6	114	NRARP "Uncharacterized protein	0.276	0.701	0.301	0.00023

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 44/141 (31%), Positives = 74/141 (52%)

Query:   117 RALVRKDWKEVERFISENPDTLYAKFTESCGTLFH-SMANINEDEAHRLLDEFLDMISPL 175
             +A++  DWK     IS     +  + T +     H ++A  ++D    LL E    + P 
Sbjct:    56 KAVLTGDWKTASTLISRKECNVVEQITGNSEIALHIAVAAKHKDFVRNLLRE----MDPP 111

Query:   176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
             DL   +  G TPL+ AA +G+ + A++L+   ++LP++ N     PIH AA  GH E V+
Sbjct:   112 DLSLKNKDGNTPLSFAAALGDIETAEMLINMIRDLPDISNEKTMTPIHIAALYGHGEMVQ 171

Query:   236 YLLSVTGVEEEDSHEKYSNPF 256
             YL S T +++ +  ++Y N F
Sbjct:   172 YLFSKTSIKDLND-QQYLNLF 191

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 49/144 (34%), Positives = 69/144 (47%)

Query:   114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFH-SMANINEDEAHRLLDEFLDMI 172
             QL +A ++ DWK     I E    +Y K T    T+ H ++A  +E     LL      +
Sbjct:    90 QLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGS----L 145

Query:   173 SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232
                DL   +  G T L  AA  G  + AK+L++ NK+LP +R      PIH AA  GH E
Sbjct:   146 ESNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGE 205

Query:   233 TVEYLLSVTGVEEEDSHEKYSNPF 256
              V+YL   T   E +  E++ N F
Sbjct:   206 MVKYLYKNTRFREFND-EEFVNLF 228

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C390 DYSFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 27/74 (36%), Positives = 37/74 (50%)

Query:   183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG 242
             SG   L  A + GN    K+LVKY  ++ + R+  G  P+H A   GH +   YLLS+  
Sbjct:    54 SGMAALHQAVLTGNLDCVKLLVKYGADI-HQRDENGWTPLHMACSDGHADIARYLLSLGA 112

Query:   243 VEEE--DSHEKYSN 254
               E   D  EK S+
Sbjct:   113 SLEATTDDGEKPSD 126

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

ASPGD|ASPL0000075867 AN8767 [Emericella nidulans (taxid:162425)]

 Score = 131 (51.2 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 44/130 (33%), Positives = 64/130 (49%)

Query:   143 TESCGTLFH-SMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
             TE   T  H ++ N  ED A  LL+   D   P   E  D+ G  PL  AA  G  K A+
Sbjct:   655 TEEGATPLHQAIINEREDIAEVLLEHGAD---P---EAQDSHGDAPLHFAAASGRRKMAE 708

Query:   202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECG 261
             +L+    ++ ++ N  G  P+H AA +GHR+ VE+LLS  G   E  ++    P     G
Sbjct:   709 LLLDKGVDI-DITNYTGDTPLHKAASNGHRKMVEFLLS-RGATLEIRNDYRQTPLHKAVG 766

Query:   262 LK--LLEILI 269
              K  +L +L+
Sbjct:   767 AKHHILRLLV 776

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030515-6 nrarpa "notch-regulated ankyrin repeat protein a" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 26/83 (31%), Positives = 41/83 (49%)

Query:   157 NEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR 216
             N  E H LL    +     ++      G T L  + I GN +  K+LVK+  ++  + NR
Sbjct:    24 NTKELHSLLQNMTNC--EFNVNSFGPEGQTALHQSVIDGNLELVKLLVKFGADI-RLANR 80

Query:   217 IGQCPIHCAARSGHRETVEYLLS 239
              G   +H AA  GH++ V YL++
Sbjct:    81 EGWSALHIAAFGGHQDIVLYLIT 103

GO:0002040 "sprouting angiogenesis" evidence=IGI;IMP

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=IMP

GO:0022407 "regulation of cell-cell adhesion" evidence=IMP

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0050931 "pigment cell differentiation" evidence=IMP

GO:0001755 "neural crest cell migration" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

POMBASE|SPBP16F5.05c SPBP16F5.05c "ribosome biogenesis protein Nop8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 105 (42.0 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query:   164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKNLPNMRNRIGQCPI 222
             LLDE ++   P +L   D +G + L  A+  G+    + ++ Y NK + N +N  G   +
Sbjct:    17 LLDEIIEKC-PQELSRRDENGNSGLHMASANGHIAVVQKIIPYLNKEVINAQNESGNTAM 75

Query:   223 HCAARSGHRETVEYLLSVTG 242
             H AA +GH E  + LL   G
Sbjct:    76 HWAALNGHAEICKLLLEAGG 95

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030688 "preribosome, small subunit precursor" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

ZFIN|ZDB-GENE-030515-7 nrarpb "notch-regulated ankyrin repeat protein b" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 8.6e-05, P = 8.6e-05
 Identities = 26/83 (31%), Positives = 40/83 (48%)

Query:   157 NEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR 216
             N  E H LL    +     ++      G T L  + I GN +  K+LVK+  +   + NR
Sbjct:    23 NTKELHSLLQNMTNC--EFNVNSFGPEGQTALHQSVIDGNLELVKLLVKFGADT-RLANR 79

Query:   217 IGQCPIHCAARSGHRETVEYLLS 239
              G   +H AA  GH++ V YL++
Sbjct:    80 DGWSALHIAAFGGHQDIVLYLIT 102

GO:0002040 "sprouting angiogenesis" evidence=IGI;IMP

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=IMP

GO:0001569 "patterning of blood vessels" evidence=IMP

GO:0022407 "regulation of cell-cell adhesion" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

DICTYBASE|DDB_G0287459 secG "Arf guanyl-nucleotide exchange factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
 Identities = 32/94 (34%), Positives = 51/94 (54%)

Query:   181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
             D  G TPL      GN +  K L++    + NM + +G+ P+H AA +GH+E  EYLL +
Sbjct:   265 DIEGVTPLHHTCFNGNLQLTKRLIELGAKI-NMVDEMGETPLHKAAFNGHKEVCEYLLYL 323

Query:   241 --TGVEEEDSHEKYSNPFAGECGL-KLLEILIEF 271
               T ++  DS +  S   A   GL  ++++LI +
Sbjct:   324 DPTMIDCRDSRQSTSLHLAAFNGLLDMVDLLIRY 357

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

MGI|MGI:3588184 K230010J24Rik "RIKEN cDNA K230010J24 gene" [Mus musculus (taxid:10090)]

 Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query:   177 LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY 236
             +E  D+ G TPL+ AA  G T A ++L +   N PN +   G+ P++ AA  GH E VE 
Sbjct:   242 VECEDSHGNTPLSEAAAGGQTMAIQLLAELGAN-PNTKGAFGRTPLYRAAFGGHLEAVEE 300

Query:   237 LLSV 240
             LL +
Sbjct:   301 LLKI 304

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G3MYP6 NRARP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 96 (38.9 bits), Expect = 0.00023, P = 0.00023
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query:   157 NEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR 216
             N  E   LL    +     ++      G T L  + I GN +  K+LVK+  ++  + NR
Sbjct:    26 NTQELQSLLQNMTNC--EFNVNSFGPEGQTALHQSVIDGNLELVKLLVKFGADI-RLANR 82

Query:   217 IGQCPIHCAARSGHRETVEYLLS 239
              G   +H AA  GH++ V YL++
Sbjct:    83 DGWSALHIAAFGGHQDIVLYLIT 105

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IEA

GO:0045581 "negative regulation of T cell differentiation" evidence=IEA

GO:0022407 "regulation of cell-cell adhesion" evidence=IEA

GO:0002043 "blood vessel endothelial cell proliferation involved in sprouting angiogenesis" evidence=IEA

GO:0001938 "positive regulation of endothelial cell proliferation" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000182001 SubName- Full=Chromosome undetermined scaffold_102, whole genome shotgun sequence; (285 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	289
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 149 LFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNK 208
           L  + +N + +    LL+         D+   D  G TPL  AA  G+ +  K+L++   
Sbjct: 11  LHLAASNGHLEVVKLLLEN------GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 209 NLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           +  N R++ G  P+H AAR+G+ + V+ LL 
Sbjct: 65  D-VNARDKDGNTPLHLAARNGNLDVVKLLLK 94

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIH 223
           L+   L+  + ++L +TDT     L  AA  GN +  K+L+++  ++ N +++ G   +H
Sbjct: 12  LVKLLLEKGADVNLGDTDT----ALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALH 66

Query: 224 CAARSGHRETVEYLLS 239
            AAR+G+ E V+ LL 
Sbjct: 67  LAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.2 bits (141), Expect = 8e-11
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TPL  AA  GN    K+L+K+  +  N R++ G+ P+H AA++GH E V+
Sbjct: 65  DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVK 123

Query: 236 YLL 238
            LL
Sbjct: 124 LLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
             D  G TPL  AA  G+ +  K+L++   +  N ++  G+ P+H AA++GH E V+ LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 239 S 239
            
Sbjct: 61  E 61

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           G T L  AAI G  +  K L++   +  N  +  G   +H AA +G+ E ++ LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEED 247
           L  AA  GN +  K+L++   ++           +H AAR+G+ E V+ LL   G +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT---ALHLAARNGNLEIVKLLLE-HGADVNA 56

Query: 248 SHEKYSNP--FAGECG-LKLLEILIE 270
             +  +     A   G L+++++L+E
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 12/103 (11%)

Query: 144 ESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTK----- 198
                  HS A+  +D+  +LL       S  D+   D  G TPL  AA+ GN       
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLA-----SGADVNAKDADGDTPLHLAALNGNPPEGNIE 125

Query: 199 AAKILVKYNKNL--PNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            AK+L++   +L   N+R+  G  P+H AA +G  + VE LL 
Sbjct: 126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE 168

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 203 LVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           L+++     N  +  G  P+H AA+ G  E V++LL
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL 36

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 212 NMRNRIGQCPIHCAARSGHRETVEYLLS 239
           N R+  G+ P+H AA +GH E V+ LL 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLE 28

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 218 GQCPIHCAARSGHRETVEYLLS 239
           G  P+H AAR+GH E V+ LL 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLE 23

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	99.98
PHA03100	480	ankyrin repeat protein; Provisional	99.98
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PHA02917	661	ankyrin-like protein; Provisional	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
PHA02743	166	Viral ankyrin protein; Provisional	99.82
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.8
KOG0514	452	consensus Ankyrin repeat protein [General function	99.8
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
PHA02792	631	ankyrin-like protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.63
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.63
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.63
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.61
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.53
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.48
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.41
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.37
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.35
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.94
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.88
PF13606	30	Ank_3: Ankyrin repeat	98.83
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.79
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.79
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.73
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.71
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.69
PF13606	30	Ank_3: Ankyrin repeat	98.68
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.65
KOG0522	560	consensus Ankyrin repeat protein [General function	98.6
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.6
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.55
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.45
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.44
KOG0522	560	consensus Ankyrin repeat protein [General function	98.31
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.26
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.17
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.14
KOG0511	516	consensus Ankyrin repeat protein [General function	98.14
KOG0511	516	consensus Ankyrin repeat protein [General function	98.06
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.02
KOG2384	223	consensus Major histocompatibility complex protein	98.0
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.97
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.97
KOG2384	223	consensus Major histocompatibility complex protein	97.83
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.04
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.45
KOG2505	591	consensus Ankyrin repeat protein [General function	96.21
KOG2505	591	consensus Ankyrin repeat protein [General function	95.88
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.28
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.08
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.92
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.07
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.62
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.63

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-33  Score=209.89  Aligned_cols=166  Identities=21%  Similarity=0.232  Sum_probs=134.0

Q ss_pred             cHHHhcCCHHHHHHHHHc-CCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           86 QIKQVKTSEDWFREMVET-GVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~-g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      |.+...++.+++.+|++. +..+   |..|+||||+|+..|+.++|+.|+.+.+++++.. +..|.||||||+..|+   
T Consensus        43 Hwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~-tn~G~T~LHyAagK~r---  118 (226)
T KOG4412|consen   43 HWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNAT-TNGGQTCLHYAAGKGR---  118 (226)
T ss_pred             eeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCccee-cCCCcceehhhhcCCh---
Confidence            346667778888888853 3333   4578888888888888888888888668888888 8888888888888888   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+|+++|++.  |+.++.+|..|.||||-|+..|..+++++|++.|+.+ |.+|..|+||||.|...|+.+....|+++|
T Consensus       119 ~eIaqlLle~--ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  119 LEIAQLLLEK--GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             hhHHHHHHhc--CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            8888888888  8888888888888888888888888888888888885 888888888888888888888888888888


Q ss_pred             CCcccccccCCCCcccccccchHHHHHH
Q 039376          242 GVEEEDSHEKYSNPFAGECGLKLLEILI  269 (289)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~  269 (289)
                      ++.+          +.|+.| |++..+.
T Consensus       196 Ad~~----------~edke~-t~~~~a~  212 (226)
T KOG4412|consen  196 ADTD----------REDKEG-TALRIAC  212 (226)
T ss_pred             ccee----------eccccC-chHHHHH
Confidence            8888          888777 7776654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.98  E-value=4.5e-31  Score=223.62  Aligned_cols=201  Identities=12%  Similarity=0.056  Sum_probs=128.8

Q ss_pred             hcCCchHHHHHHHhccCCC-------chhhhhcCChhhhhhcccCCCCccchhc-cccccHHHhcCCHHHHHHHHHcCCc
Q 039376           35 DSKNEDEIVKMKQKDFAQP-------SSKLVVGKKEDEITEMKPANDPIIEVKS-HERQQIKQVKTSEDWFREMVETGVK  106 (289)
Q Consensus        35 ~~~~~~~iv~~L~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ll~~g~~  106 (289)
                      +-.+..+++++|+++++..       ....+...+..+++++++..++..+... ....+.++..++.++++.|++.|++
T Consensus         7 ~~~~~~~~~~~Lis~~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gad   86 (284)
T PHA02791          7 NTWKSKQLKSFLSSKDAFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMD   86 (284)
T ss_pred             cccCHHHHHHHHHhCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            3456788999999877432       2244555566666666666665544332 1222345566777777777777766


Q ss_pred             C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCC-ChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-
Q 039376          107 V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESC-GTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-  181 (289)
Q Consensus       107 ~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~-~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-  181 (289)
                      +   |..|.||||+|+..|+.+++++|+. .+++++.+ +..| .||||+|+..|+   .+++++|++.  +.+.  .+ 
T Consensus        87 vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~-~gadin~~-~~~g~~TpL~~Aa~~g~---~eivk~LL~~--~~~~--~d~  157 (284)
T PHA02791         87 DSQFDDKGNTALYYAVDSGNMQTVKLFVK-KNWRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSE--IPST--FDL  157 (284)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCcc-CCCCCcHHHHHHHHcCC---HHHHHHHHhc--CCcc--ccc
Confidence            5   4466777777777777777776666 46666666 5555 367777777777   7777777765  3322  12 


Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          182 TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCP-IHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       182 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      ..|.||||+|+..|+.+++++|+++|+++ +.++..|.|| ||+|+..|+.+++++|+++|++++
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in  221 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY  221 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Confidence            23567777777777777777777777764 6666666665 777777777777777777777766

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.98  E-value=6.2e-31  Score=241.36  Aligned_cols=231  Identities=19%  Similarity=0.200  Sum_probs=208.3

Q ss_pred             chhhhhhcCCchHHHHHHHhccCCCch---------hh-----hhcCChhhhhhcccCCCCccchhcccccc---HHH--
Q 039376           29 PSSRLLDSKNEDEIVKMKQKDFAQPSS---------KL-----VVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQ--   89 (289)
Q Consensus        29 ~~~~~~~~~~~~~iv~~L~~~~~~~~~---------~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~--   89 (289)
                      ....++...+..++|++|++.|+++..         ..     ++..+..++++++...+++++..+..+.+   .|+  
T Consensus        37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~  116 (480)
T PHA03100         37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISK  116 (480)
T ss_pred             hhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhc
Confidence            345667788999999999999965432         45     67778889999999999988777765555   477  


Q ss_pred             hcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcC--CHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHH
Q 039376           90 VKTSEDWFREMVETGVKV---DLGEHPQLRRALVRK--DWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRL  164 (289)
Q Consensus        90 ~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~  164 (289)
                      ..++.+++++|+++|+++   +..|.||||+|+..|  +.+++++|++ .|++++.+ +..|.||||+|+..|+   .++
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~-d~~g~tpL~~A~~~~~---~~i  191 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAK-NRYGYTPLHIAVEKGN---IDV  191 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccc-cCCCCCHHHHHHHhCC---HHH
Confidence            889999999999999987   568999999999999  9999999998 68999998 8899999999999999   999


Q ss_pred             HHHHHhccCCCCccccCCCC------CCHHHHHHHhCC--HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 039376          165 LDEFLDMISPLDLEETDTSG------GTPLTSAAIVGN--TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY  236 (289)
Q Consensus       165 v~~Ll~~~~g~~~~~~~~~g------~t~L~~A~~~g~--~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~  236 (289)
                      +++|++.  |++++..+..|      .||||+|+..|+  .+++++|+++|+++ +.++..|+||||+|+..|+.+++++
T Consensus       192 v~~Ll~~--ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~TpL~~A~~~~~~~iv~~  268 (480)
T PHA03100        192 IKFLLDN--GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYGFTPLHYAVYNNNPEFVKY  268 (480)
T ss_pred             HHHHHHc--CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            9999999  99999999888      899999999999  99999999999996 9999999999999999999999999


Q ss_pred             HHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376          237 LLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY  277 (289)
Q Consensus       237 Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~  277 (289)
                      |+++|++++          ..+..|.||+++|+..|..++.
T Consensus       269 Ll~~gad~n----------~~d~~g~tpl~~A~~~~~~~iv  299 (480)
T PHA03100        269 LLDLGANPN----------LVNKYGDTPLHIAILNNNKEIF  299 (480)
T ss_pred             HHHcCCCCC----------ccCCCCCcHHHHHHHhCCHHHH
Confidence            999999999          9999999999999999987643

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-31  Score=202.30  Aligned_cols=145  Identities=23%  Similarity=0.257  Sum_probs=139.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |.+|+|||||||..|+.+++.+|++..+..++.+ |..|+||||+||+.|+   .++|+.|+... |++++..+..|.|+
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s~g~---~evVk~Ll~r~-~advna~tn~G~T~  109 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAASNGN---DEVVKELLNRS-GADVNATTNGGQTC  109 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhhcCc---HHHHHHHhcCC-CCCcceecCCCcce
Confidence            5689999999999999999999997778888999 9999999999999999   99999999987 89999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI  267 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~  267 (289)
                      ||||+..|.++++++|+++|+.+ +++|..|+||||-|+.-|..+++++|+..|+.++          .+|+.|+||||.
T Consensus       110 LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n----------~qDk~G~TpL~~  178 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN----------TQDKYGFTPLHH  178 (226)
T ss_pred             ehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHhcCCCCC----------cccccCccHHHH
Confidence            99999999999999999999996 9999999999999999999999999999999999          999999999998


Q ss_pred             H
Q 039376          268 L  268 (289)
Q Consensus       268 a  268 (289)
                      |
T Consensus       179 a  179 (226)
T KOG4412|consen  179 A  179 (226)
T ss_pred             H
Confidence            7

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=4.1e-30  Score=227.89  Aligned_cols=170  Identities=21%  Similarity=0.222  Sum_probs=159.1

Q ss_pred             cccHHHhcCCHHHHHHHHHcCCcCCCC----CchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc
Q 039376           84 RQQIKQVKTSEDWFREMVETGVKVDLG----EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED  159 (289)
Q Consensus        84 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~----g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~  159 (289)
                      ..|.|+..++++++++|+++|+++|.-    +.||||||+++|+..+|..|++ +|+++..+ |..|.+|||+|+++|+ 
T Consensus        81 lLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlq-hGAdpt~~-D~~G~~~lHla~~~~~-  157 (600)
T KOG0509|consen   81 LLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQ-HGADPTLK-DKQGLTPLHLAAQFGH-  157 (600)
T ss_pred             ceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHH-cCCCCcee-cCCCCcHHHHHHHhCc-
Confidence            346799999999999999999999774    4799999999999999999999 79999999 9999999999999999 


Q ss_pred             hHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHH
Q 039376          160 EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCPIHCAARSGHRETVEYLL  238 (289)
Q Consensus       160 ~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll  238 (289)
                        .-+|-||+.+  +++++.+|.+|+||||||+..|....+..|++.|+.+ ..+| ..|.||||+|+..|+..++..|+
T Consensus       158 --~~~vayll~~--~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN~~~v~Ll~  232 (600)
T KOG0509|consen  158 --TALVAYLLSK--GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGNLTAVKLLL  232 (600)
T ss_pred             --hHHHHHHHHh--cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc-cccccccCCchHHHHHhcCCcceEehhh
Confidence              9999999999  9999999999999999999999988899999999996 7777 89999999999999999999777


Q ss_pred             hcCCCcccccccCCCCcccccccchHHHHHHHh
Q 039376          239 SVTGVEEEDSHEKYSNPFAGECGLKLLEILIEF  271 (289)
Q Consensus       239 ~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~  271 (289)
                      +.|++.+          ..+.+|+||+..|.+.
T Consensus       233 ~g~~~~d----------~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  233 EGGADLD----------KTNTNGKTPFDLAQER  255 (600)
T ss_pred             hcCCccc----------ccccCCCCHHHHHHHh
Confidence            8889988          9999999999999776

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.2e-29  Score=227.07  Aligned_cols=225  Identities=16%  Similarity=0.154  Sum_probs=164.2

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCc---------hhhhhcCChhhhhhcccCCCCccc--------------------
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPS---------SKLVVGKKEDEITEMKPANDPIIE--------------------   78 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~--------------------   78 (289)
                      ......+...|..++|++|++.|++..         ...+...+..++++++...+++..                    
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~  115 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGI  115 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcC
Confidence            345566778899999999999886543         245666777888888887665432                    


Q ss_pred             ---hhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChH
Q 039376           79 ---VKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTL  149 (289)
Q Consensus        79 ---~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~  149 (289)
                         ..+..+.+   .|+..++.+++++|+++|+++   |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~g~~~n~~-~~~g~tp  193 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE-KGAYANVK-DNNGESP  193 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC-CCCCCCH
Confidence               22222222   355667777777777777665   4466777777777777777777776 46666666 6677777


Q ss_pred             HHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Q 039376          150 FHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG  229 (289)
Q Consensus       150 Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~  229 (289)
                      ||+|+..|+   .+++++|++.  |++++.++..|.||||+|+..+. +.+.+|+ .|+++ +.++..|+||||+|+..+
T Consensus       194 L~~A~~~g~---~~iv~~Ll~~--g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~i-n~~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        194 LHNAAEYGD---YACIKLLIDH--GNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASI-NDQDIDGSTPLHHAINPP  265 (434)
T ss_pred             HHHHHHcCC---HHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCC-CCcCCCCCCHHHHHHhcC
Confidence            777777777   7777777777  67777777777777777776554 4455555 46674 888889999999999875


Q ss_pred             -CHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          230 -HRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       230 -~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                       +.+++++|+++|++++          ..+..|.|||++|+..+
T Consensus       266 ~~~~iv~~Ll~~gad~n----------~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        266 CDIDIIDILLYHKADIS----------IKDNKGENPIDTAFKYI  299 (434)
T ss_pred             CcHHHHHHHHHCcCCCC----------CCCCCCCCHHHHHHHhC
Confidence             7899999999999999          99999999999999877

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6e-29  Score=224.02  Aligned_cols=223  Identities=14%  Similarity=0.108  Sum_probs=191.5

Q ss_pred             hhhhhcCCchHHHHHHHhccCCCch---------hhhhcCChhhhhhcccCCCCccchhcccc---ccHHHhcCCHHHHH
Q 039376           31 SRLLDSKNEDEIVKMKQKDFAQPSS---------KLVVGKKEDEITEMKPANDPIIEVKSHER---QQIKQVKTSEDWFR   98 (289)
Q Consensus        31 ~~~~~~~~~~~iv~~L~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   98 (289)
                      ...+...|+.+++++|++.|+++..         ..++..+..++++++...|+..+.....+   .+.|+..++.++++
T Consensus         6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~   85 (413)
T PHA02875          6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE   85 (413)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence            3445568899999999999865533         45666777888888888887766553333   34588999999999


Q ss_pred             HHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC
Q 039376           99 EMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP  174 (289)
Q Consensus        99 ~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g  174 (289)
                      .|++.|...    +..|.||||+|+..|+.+++++|++ .|++++.+ +..|.||||+|+..|+   .+++++|++.  |
T Consensus        86 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~-~gad~~~~-~~~g~tpLh~A~~~~~---~~~v~~Ll~~--g  158 (413)
T PHA02875         86 ELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA-RGADPDIP-NTDKFSPLHLAVMMGD---IKGIELLIDH--K  158 (413)
T ss_pred             HHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHhc--C
Confidence            999998754    4579999999999999999999999 68999998 8999999999999999   9999999999  9


Q ss_pred             CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC
Q 039376          175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ-CPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYS  253 (289)
Q Consensus       175 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  253 (289)
                      ++++.++..|.||||+|+..|+.+++++|++.|+++ +..+..|. ||+|+|+..|+.+++++|+++|++++        
T Consensus       159 ~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n--------  229 (413)
T PHA02875        159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN--------  229 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc--------
Confidence            999999999999999999999999999999999995 88888775 78999999999999999999999998        


Q ss_pred             Ccc---cccccchHHHHHHHh
Q 039376          254 NPF---AGECGLKLLEILIEF  271 (289)
Q Consensus       254 ~~~---~~~~g~~~l~~a~~~  271 (289)
                        +   .+..+.|+++.+...
T Consensus       230 --~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        230 --IMFMIEGEECTILDMICNM  248 (413)
T ss_pred             --hHhhcCCCchHHHHHHHhh
Confidence              4   355788898877643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.6e-29  Score=224.79  Aligned_cols=206  Identities=17%  Similarity=0.152  Sum_probs=181.3

Q ss_pred             hhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcCC---CCCchHHHHHHHcCCHHHHHH
Q 039376           56 KLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKVD---LGEHPQLRRALVRKDWKEVER  129 (289)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~~---~~g~t~Lh~A~~~g~~~~v~~  129 (289)
                      ..++..+..++++++...|++.+.....+.+   .|+..++.+++++|+++|++++   ..+.||||.|++.|+.+++++
T Consensus         7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~   86 (413)
T PHA02875          7 CDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE   86 (413)
T ss_pred             HHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence            4556677888889999888888777655554   4778899999999999999774   468899999999999999999


Q ss_pred             HHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Q 039376          130 FISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       130 ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      |++. +.......+..|.||||+|+..|+   .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        87 Ll~~-~~~~~~~~~~~g~tpL~~A~~~~~---~~iv~~Ll~~--gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         87 LLDL-GKFADDVFYKDGMTPLHLATILKK---LDIMKLLIAR--GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHc-CCcccccccCCCCCHHHHHHHhCC---HHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            9985 555433326789999999999999   9999999999  999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCccccccc-chHHHHHHHhCCCCccc
Q 039376          210 LPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECG-LKLLEILIEFNFLGQYT  278 (289)
Q Consensus       210 i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g-~~~l~~a~~~g~~~~~~  278 (289)
                      + +.++..|+||||+|+..|+.+++++|+++|++++          ..+..| .+++++|+..|..++..
T Consensus       161 ~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n----------~~~~~~~~t~l~~A~~~~~~~iv~  219 (413)
T PHA02875        161 L-DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID----------YFGKNGCVAALCYAIENNKIDIVR  219 (413)
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----------cCCCCCCchHHHHHHHcCCHHHHH
Confidence            5 9999999999999999999999999999999999          777666 58999999999887433

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=223.93  Aligned_cols=223  Identities=19%  Similarity=0.212  Sum_probs=179.8

Q ss_pred             CchHHHHHHHhccCCCch---------hhhhcCC-hhhhhhcccCCCCccchhccccccH---HH--hcCCHHHHHHHHH
Q 039376           38 NEDEIVKMKQKDFAQPSS---------KLVVGKK-EDEITEMKPANDPIIEVKSHERQQI---KQ--VKTSEDWFREMVE  102 (289)
Q Consensus        38 ~~~~iv~~L~~~~~~~~~---------~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~Ll~  102 (289)
                      +..+++++|++.|++...         ..+...+ ..++.+++...+++++..+..+.++   +.  ...+.+++++|++
T Consensus        61 ~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~  140 (471)
T PHA03095         61 KVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR  140 (471)
T ss_pred             ChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH
Confidence            377888888887754432         3444444 4677777888888777777666554   33  3346778888888


Q ss_pred             cCCcC---CCCCchHHHHHHHcC--CHHHHHHHHhhCCCCcccccCCCCChHHHHHHhc--CCchHHHHHHHHHhccCCC
Q 039376          103 TGVKV---DLGEHPQLRRALVRK--DWKEVERFISENPDTLYAKFTESCGTLFHSMANI--NEDEAHRLLDEFLDMISPL  175 (289)
Q Consensus       103 ~g~~~---~~~g~t~Lh~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~--g~~~~~~~v~~Ll~~~~g~  175 (289)
                      +|+++   |..|.||||+|+..+  +.++++.|++ .+++++.. +..|.||||+|+..  +.   .+++++|++.  |+
T Consensus       141 ~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~-~g~~~~~~-d~~g~t~Lh~~~~~~~~~---~~i~~~Ll~~--g~  213 (471)
T PHA03095        141 KGADVNALDLYGMTPLAVLLKSRNANVELLRLLID-AGADVYAV-DDRFRSLLHHHLQSFKPR---ARIVRELIRA--GC  213 (471)
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCccc-CCCCCCHHHHHHHHCCCc---HHHHHHHHHc--CC
Confidence            88876   457788888877765  5778888777 57777777 78888888888765  55   7888999988  89


Q ss_pred             CccccCCCCCCHHHHHHHhCCH--HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC
Q 039376          176 DLEETDTSGGTPLTSAAIVGNT--KAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYS  253 (289)
Q Consensus       176 ~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  253 (289)
                      +++.+|..|+||||+|+..|..  .++..|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++        
T Consensus       214 ~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n--------  284 (471)
T PHA03095        214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLHYAAVFNNPRACRRLIALGADIN--------  284 (471)
T ss_pred             CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--------
Confidence            9999999999999999998875  5788999999996 9999999999999999999999999999999999        


Q ss_pred             CcccccccchHHHHHHHhCCCCccc
Q 039376          254 NPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       254 ~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                        +.+.+|.|||++|+..|+.++..
T Consensus       285 --~~~~~g~tpl~~A~~~~~~~~v~  307 (471)
T PHA03095        285 --AVSSDGNTPLSLMVRNNNGRAVR  307 (471)
T ss_pred             --ccCCCCCCHHHHHHHhCCHHHHH
Confidence              99999999999999999887543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1e-28  Score=226.64  Aligned_cols=222  Identities=19%  Similarity=0.214  Sum_probs=197.0

Q ss_pred             chHHHHHHHhccC---------CCchhhhhcCChhhhhhcccCCCCccchhcccccc---H-----HHhcCCHHHHHHHH
Q 039376           39 EDEIVKMKQKDFA---------QPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---I-----KQVKTSEDWFREMV  101 (289)
Q Consensus        39 ~~~iv~~L~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~Ll  101 (289)
                      ...+++++++.+.         ......++..+..++++++...|++++..+..+..   .     +...++.++++.|+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll   93 (480)
T PHA03100         14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLL   93 (480)
T ss_pred             HHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHH
Confidence            4467777776542         23446677888889999999999888776665533   5     77789999999999


Q ss_pred             HcCCcC---CCCCchHHHHHH--HcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC--CchHHHHHHHHHhccCC
Q 039376          102 ETGVKV---DLGEHPQLRRAL--VRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN--EDEAHRLLDEFLDMISP  174 (289)
Q Consensus       102 ~~g~~~---~~~g~t~Lh~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~~~~v~~Ll~~~~g  174 (289)
                      ++|+++   +..|.||||+|+  ..|+.+++++|++ .|++++.. +..|.||||+|+..+  +   .+++++|++.  |
T Consensus        94 ~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~~~---~~iv~~Ll~~--g  166 (480)
T PHA03100         94 EYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NGANVNIK-NSDGENLLHLYLESNKID---LKILKLLIDK--G  166 (480)
T ss_pred             HCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHH-cCCCCCcc-CCCCCcHHHHHHHcCCCh---HHHHHHHHHC--C
Confidence            999987   557999999999  9999999999998 68999998 999999999999999  8   9999999999  9


Q ss_pred             CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCC------CCHHHHHHHcCC--HHHHHHHHhcCCCccc
Q 039376          175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIG------QCPIHCAARSGH--RETVEYLLSVTGVEEE  246 (289)
Q Consensus       175 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g------~t~L~~A~~~~~--~~~~~~Ll~~g~~~~~  246 (289)
                      ++++.++..|.||||+|+..|+.+++++|+++|++. +..+..|      .||||.|+..++  .+++++|+++|++++ 
T Consensus       167 ~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din-  244 (480)
T PHA03100        167 VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN-  244 (480)
T ss_pred             CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC-
Confidence            999999999999999999999999999999999995 8888888      899999999999  999999999999999 


Q ss_pred             ccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          247 DSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       247 ~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                               ..+..|.||||+|+..|..++..
T Consensus       245 ---------~~d~~g~TpL~~A~~~~~~~iv~  267 (480)
T PHA03100        245 ---------IKDVYGFTPLHYAVYNNNPEFVK  267 (480)
T ss_pred             ---------CCCCCCCCHHHHHHHcCCHHHHH
Confidence                     99999999999999999877433

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.7e-28  Score=205.83  Aligned_cols=209  Identities=12%  Similarity=0.013  Sum_probs=173.3

Q ss_pred             CCchhhhhhcCCchHHHHHHHhccCCC-------chhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHH
Q 039376           27 SQPSSRLLDSKNEDEIVKMKQKDFAQP-------SSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDW   96 (289)
Q Consensus        27 ~~~~~~~~~~~~~~~iv~~L~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~   96 (289)
                      ......++...++.+++++|++.++..       ....+...+..+++++++..+++++..+..+.+   .+...++.++
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ei  109 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQT  109 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            344566777889999999999988643       235666778889999999999988887776655   4888999999


Q ss_pred             HHHHHHcCCcCC---CCC-chHHHHHHHcCCHHHHHHHHhhCCCCcccccC-CCCChHHHHHHhcCCchHHHHHHHHHhc
Q 039376           97 FREMVETGVKVD---LGE-HPQLRRALVRKDWKEVERFISENPDTLYAKFT-ESCGTLFHSMANINEDEAHRLLDEFLDM  171 (289)
Q Consensus        97 ~~~Ll~~g~~~~---~~g-~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~-~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~  171 (289)
                      ++.|+++|++++   ..| .||||+|+..|+.+++++|++. +.+.  . + ..|.||||+|+..|+   .+++++|++.
T Consensus       110 vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~-~~~~--~-d~~~g~TpLh~Aa~~g~---~eiv~lLL~~  182 (284)
T PHA02791        110 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST--F-DLAILLSCIHITIKNGH---VDMMILLLDY  182 (284)
T ss_pred             HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc-CCcc--c-ccccCccHHHHHHHcCC---HHHHHHHHHC
Confidence            999999999874   455 4899999999999999999985 3322  2 2 358999999999999   9999999999


Q ss_pred             cCCCCccccCCCCCCH-HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 039376          172 ISPLDLEETDTSGGTP-LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHE  250 (289)
Q Consensus       172 ~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  250 (289)
                        |++++.++..|.|| ||+|+..|+.+++++|+++|+++ +.+|..| ++|      ++.|++++||++.++-..++..
T Consensus       183 --gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i-n~~~~~~-~~l------~~~e~~~~ll~~~~~~~~~~~~  252 (284)
T PHA02791        183 --MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI-YSVNLEN-VLL------DDAEIAKMIIEKHVEYKSDSYT  252 (284)
T ss_pred             --CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC-ccCcccC-ccC------CCHHHHHHHHHhhhhhcccccc
Confidence              99999999999876 99999999999999999999996 9998844 665      8899999999999887644444


Q ss_pred             CC
Q 039376          251 KY  252 (289)
Q Consensus       251 ~~  252 (289)
                      +.
T Consensus       253 ~~  254 (284)
T PHA02791        253 KD  254 (284)
T ss_pred             cc
Confidence            33

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.2e-28  Score=197.10  Aligned_cols=173  Identities=12%  Similarity=0.072  Sum_probs=154.3

Q ss_pred             cccHHHhcCCHHHHHHHHHcCCcCCCCCchHHHHHHHcC--CHHHHHHHHhhCCCCcccccC-CCCChHHHHHHhc---C
Q 039376           84 RQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRK--DWKEVERFISENPDTLYAKFT-ESCGTLFHSMANI---N  157 (289)
Q Consensus        84 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~g~t~Lh~A~~~g--~~~~v~~ll~~~~~~~~~~~~-~~~~t~Lh~A~~~---g  157 (289)
                      ..+.++..+++++++.|+..+...|..|.||||+|+..+  +.+++++|++ .+++++.+ + ..|.||||+|+..   +
T Consensus        24 pL~~A~~~~~~~~vk~Li~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~-~~~~g~TpLh~a~~~~~~~  101 (209)
T PHA02859         24 PLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIE-NGADVNFK-TRDNNLSALHHYLSFNKNV  101 (209)
T ss_pred             HHHHHHHhCcHHHHHHHHHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCcc-CCCCCCCHHHHHHHhCccc
Confidence            344577889999999999876666889999999999854  8999999999 69999988 5 5899999998864   4


Q ss_pred             CchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHh--CCHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHHHH
Q 039376          158 EDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIV--GNTKAAKILVKYNKNLPNMRNRIGQCPIHC-AARSGHRETV  234 (289)
Q Consensus       158 ~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~-A~~~~~~~~~  234 (289)
                      +   .+++++|++.  |++++.++..|.||||+|+..  ++.+++++|+++|+++ +.+|..|.||||. |+..++.+++
T Consensus       102 ~---~eiv~~Ll~~--gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859        102 E---PEILKILIDS--GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             c---HHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHHHH
Confidence            6   8999999999  999999999999999998764  6899999999999996 9999999999996 5678899999


Q ss_pred             HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376          235 EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL  274 (289)
Q Consensus       235 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~  274 (289)
                      ++|+++|++++          .++..|+||+++|..++.+
T Consensus       176 ~~Ll~~Gadi~----------~~d~~g~tpl~la~~~~~~  205 (209)
T PHA02859        176 DFLTSLGIDIN----------ETNKSGYNCYDLIKFRNLF  205 (209)
T ss_pred             HHHHHcCCCCC----------CCCCCCCCHHHHHhhhhhh
Confidence            99999999999          9999999999999988754

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.6e-28  Score=221.71  Aligned_cols=222  Identities=16%  Similarity=0.135  Sum_probs=177.8

Q ss_pred             CCchHHHHHHHhccCCCch--------hhhhc------CChhhhhhcccCCCCccchhccccccHHH---h---cCCHHH
Q 039376           37 KNEDEIVKMKQKDFAQPSS--------KLVVG------KKEDEITEMKPANDPIIEVKSHERQQIKQ---V---KTSEDW   96 (289)
Q Consensus        37 ~~~~~iv~~L~~~~~~~~~--------~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~   96 (289)
                      .++.++|++|+++|++...        ..+..      .+..+++++++..|++++.++..+.++.+   .   .++.++
T Consensus        47 ~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~ei  126 (494)
T PHA02989         47 DVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDM  126 (494)
T ss_pred             CCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHH
Confidence            3478999999999876542        11111      23456788888899988888877766532   2   257889


Q ss_pred             HHHHHHcCCcC----CCCCchHHHHHHHc--CCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC----CchHHHHHH
Q 039376           97 FREMVETGVKV----DLGEHPQLRRALVR--KDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN----EDEAHRLLD  166 (289)
Q Consensus        97 ~~~Ll~~g~~~----~~~g~t~Lh~A~~~--g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g----~~~~~~~v~  166 (289)
                      +++|+++|+++    |..|.||||+|++.  ++.+++++|++ .|++++...+..|.||||+|++.+    +   .++++
T Consensus       127 v~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~-~Gadi~~~~~~~g~tpL~~a~~~~~~~~~---~~iv~  202 (494)
T PHA02989        127 LRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS-FGVNLFEKTSLYGLTPMNIYLRNDIDVIS---IKVIK  202 (494)
T ss_pred             HHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCccccccccCCChHHHHHhccccccc---HHHHH
Confidence            99999999887    35788999988764  57899998888 588887732678899999887764    6   89999


Q ss_pred             HHHhccCCCCccccCCCCCCHHHHHHHhC------CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          167 EFLDMISPLDLEETDTSGGTPLTSAAIVG------NTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       167 ~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g------~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      +|++.  |++++.++..+.|+||.++..+      ..+++++|+. ++++ +.+|..|+||||+|+..|+.+++++|+++
T Consensus       203 ~Ll~~--Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~adv-n~~d~~G~TpL~~Aa~~~~~~~v~~LL~~  278 (494)
T PHA02989        203 YLIKK--GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKI-NKKDKKGFNPLLISAKVDNYEAFNYLLKL  278 (494)
T ss_pred             HHHhC--CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCC-CCCCCCCCCHHHHHHHhcCHHHHHHHHHc
Confidence            99998  8999988888889998776543      4567776654 6885 99999999999999999999999999999


Q ss_pred             CCCcccccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                      |++++          ..+..|.|||++|+..|+.++
T Consensus       279 Gadin----------~~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        279 GDDIY----------NVSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             CCCcc----------ccCCCCCCHHHHHHHcCCHHH
Confidence            99999          999999999999999998774

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=218.83  Aligned_cols=159  Identities=14%  Similarity=0.191  Sum_probs=147.4

Q ss_pred             HHHHHHHHHcCCcCC---CC-CchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHH
Q 039376           94 EDWFREMVETGVKVD---LG-EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFL  169 (289)
Q Consensus        94 ~~~~~~Ll~~g~~~~---~~-g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll  169 (289)
                      .++++.|+++|++++   .. |.||||+|+..|+.+++++|++ .|++++.+ +..|.||||+|+..++   .+++++|+
T Consensus       147 ~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~-d~~g~tpLh~A~~~~~---~~iv~~Ll  221 (477)
T PHA02878        147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLS-YGANVNIP-DKTNNSPLHHAVKHYN---KPIVHILL  221 (477)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHH-CCCCCCCc-CCCCCCHHHHHHHhCC---HHHHHHHH
Confidence            358999999999874   35 9999999999999999999998 68999998 9999999999999999   99999999


Q ss_pred             hccCCCCccccCCCCCCHHHHHHHh-CCHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCcccc
Q 039376          170 DMISPLDLEETDTSGGTPLTSAAIV-GNTKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGHRETVEYLLSVTGVEEED  247 (289)
Q Consensus       170 ~~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  247 (289)
                      +.  |++++.++..|.||||+|+.. ++.+++++|+++|+++ +.++. .|+||||+|  .++.+++++|+++|++++  
T Consensus       222 ~~--ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin--  294 (477)
T PHA02878        222 EN--GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYGADIN--  294 (477)
T ss_pred             Hc--CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC--
Confidence            99  999999999999999999976 6899999999999996 88775 799999999  567899999999999999  


Q ss_pred             cccCCCCcccccccchHHHHHHHhC
Q 039376          248 SHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       248 ~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                              +.+..|.|||++|+..+
T Consensus       295 --------~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        295 --------SLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             --------CcCCCCCCHHHHHHHHc
Confidence                    99999999999999854

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-27  Score=219.40  Aligned_cols=230  Identities=15%  Similarity=0.071  Sum_probs=196.0

Q ss_pred             hhcCCchHHHHHHHhccCCCch---------hhhhcCC---hhhhhhcccCCCCccchhccccccH---HHhcC-CHHHH
Q 039376           34 LDSKNEDEIVKMKQKDFAQPSS---------KLVVGKK---EDEITEMKPANDPIIEVKSHERQQI---KQVKT-SEDWF   97 (289)
Q Consensus        34 ~~~~~~~~iv~~L~~~~~~~~~---------~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~-~~~~~   97 (289)
                      ..+.+..++|++|++.|++...         ..+...+   ..++++++...|++++.++..+.++   ++..+ ..+++
T Consensus        21 ~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv  100 (471)
T PHA03095         21 NASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVI  100 (471)
T ss_pred             cCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHH
Confidence            4577899999999998854432         3445544   7788999999999999888766664   66777 69999


Q ss_pred             HHHHHcCCcC---CCCCchHHHHHH--HcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhcc
Q 039376           98 REMVETGVKV---DLGEHPQLRRAL--VRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMI  172 (289)
Q Consensus        98 ~~Ll~~g~~~---~~~g~t~Lh~A~--~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~  172 (289)
                      ++|+++|+++   +..|.||||+|+  ..++.+++++|++ .|++++.+ +..|.||||+|+..+. ...+++++|++. 
T Consensus       101 ~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~-~gad~~~~-d~~g~tpL~~a~~~~~-~~~~iv~~Ll~~-  176 (471)
T PHA03095        101 KLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR-KGADVNAL-DLYGMTPLAVLLKSRN-ANVELLRLLIDA-  176 (471)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH-cCCCCCcc-CCCCCCHHHHHHHcCC-CCHHHHHHHHHc-
Confidence            9999999987   557999999999  5568899999998 68999998 9999999999988762 117999999999 


Q ss_pred             CCCCccccCCCCCCHHHHHHHh--CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHhcCCCccccc
Q 039376          173 SPLDLEETDTSGGTPLTSAAIV--GNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR--ETVEYLLSVTGVEEEDS  248 (289)
Q Consensus       173 ~g~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~~~~~~  248 (289)
                       |++++..+..|.||||+++..  +..+++++|++.|++ ++.+|..|+||||+|+..++.  .+++.|+++|++++   
T Consensus       177 -g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din---  251 (471)
T PHA03095        177 -GADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN---  251 (471)
T ss_pred             -CCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC---
Confidence             999999999999999999875  678999999999999 599999999999999998874  68889999999999   


Q ss_pred             ccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          249 HEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       249 ~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                             ..+..|+||||+|+..|..++...
T Consensus       252 -------~~d~~g~TpLh~A~~~~~~~~v~~  275 (471)
T PHA03095        252 -------ARNRYGQTPLHYAAVFNNPRACRR  275 (471)
T ss_pred             -------CcCCCCCCHHHHHHHcCCHHHHHH
Confidence                   999999999999999998775443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.9e-27  Score=215.51  Aligned_cols=223  Identities=15%  Similarity=0.155  Sum_probs=175.2

Q ss_pred             hhhhhhcCCchHHHHHHHhccCC----------CchhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHH
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQ----------PSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDW   96 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~   96 (289)
                      ..+.+-..|..++|+.|++.+..          .....++..+..++++++...|++++.....+.+   .|+..++.++
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~i   83 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI   83 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            34556678999999999976532          2335677777888888888888877766554443   4677888888


Q ss_pred             HHHHHHcCCcC--------------------------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHH
Q 039376           97 FREMVETGVKV--------------------------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLF  150 (289)
Q Consensus        97 ~~~Ll~~g~~~--------------------------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~L  150 (289)
                      +++|+++|++.                          +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.|||
T Consensus        84 v~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~-d~~g~tpL  161 (434)
T PHA02874         84 IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE-YGADVNIE-DDNGCYPI  161 (434)
T ss_pred             HHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCc-CCCCCCHH
Confidence            88888776532                          3467888888888888888888887 57888887 88888888


Q ss_pred             HHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Q 039376          151 HSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH  230 (289)
Q Consensus       151 h~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~  230 (289)
                      |+|+..++   .+++++|++.  |++++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|+||||.|+..+.
T Consensus       162 h~A~~~~~---~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        162 HIAIKHNF---FDIIKLLLEK--GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             HHHHHCCc---HHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh
Confidence            88888888   8888888888  8888888888888888888888888888888888885 7888888888888888765


Q ss_pred             HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          231 RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       231 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                       +++++|+ .|++++          ..+..|.||||+|+..+
T Consensus       236 -~~i~~Ll-~~~~in----------~~d~~G~TpLh~A~~~~  265 (434)
T PHA02874        236 -SAIELLI-NNASIN----------DQDIDGSTPLHHAINPP  265 (434)
T ss_pred             -HHHHHHH-cCCCCC----------CcCCCCCCHHHHHHhcC
Confidence             4556555 577877          88889999999999876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=1.2e-27  Score=223.63  Aligned_cols=221  Identities=14%  Similarity=0.099  Sum_probs=175.3

Q ss_pred             CCchHHHHHHHhccCCCch---------hhhhcCCh--hhhhhcccCCCCccchhccccccHH-----------------
Q 039376           37 KNEDEIVKMKQKDFAQPSS---------KLVVGKKE--DEITEMKPANDPIIEVKSHERQQIK-----------------   88 (289)
Q Consensus        37 ~~~~~iv~~L~~~~~~~~~---------~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~-----------------   88 (289)
                      .+..+++++|++.|++...         ..+...+.  .+++++|+..|++++.++..+.++.                 
T Consensus       189 ~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvki  268 (764)
T PHA02716        189 YVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNI  268 (764)
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHH
Confidence            4567888888888854433         33444443  3678888888888777666554432                 


Q ss_pred             -----------------------HhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHH--cCCHHHHHHHHhhCCCCccc
Q 039376           89 -----------------------QVKTSEDWFREMVETGVKV---DLGEHPQLRRALV--RKDWKEVERFISENPDTLYA  140 (289)
Q Consensus        89 -----------------------~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~--~g~~~~v~~ll~~~~~~~~~  140 (289)
                                             +..++.++++.|+++|+++   |..|.||||+|+.  .++.+++++|++ .|++++.
T Consensus       269 Lie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe-~GADIN~  347 (764)
T PHA02716        269 YIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHE-YGNDLNE  347 (764)
T ss_pred             HHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHH-cCCCCcc
Confidence                                   2346788999999999987   5689999998764  468899999998 6899999


Q ss_pred             ccCCCCChHHHHHHh--------------cCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH----HHhCCHHHHHH
Q 039376          141 KFTESCGTLFHSMAN--------------INEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA----AIVGNTKAAKI  202 (289)
Q Consensus       141 ~~~~~~~t~Lh~A~~--------------~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A----~~~g~~~~v~~  202 (289)
                      + +..|+||||+|+.              .++   .+++++|++.  |++++.++..|.||||.+    ...+..+++++
T Consensus       348 k-D~~G~TPLH~A~~~lav~~~ld~~~~~~~~---~eVVklLL~~--GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvkl  421 (764)
T PHA02716        348 P-DNIGNTVLHTYLSMLSVVNILDPETDNDIR---LDVIQCLISL--GADITAVNCLGYTPLTSYICTAQNYMYYDIIDC  421 (764)
T ss_pred             C-CCCCCCHHHHHHHhhhhhccccccccccCh---HHHHHHHHHC--CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHH
Confidence            9 9999999999875              257   8999999999  999999999999999942    23466788888


Q ss_pred             HHHcCCCC------------------------------------------------------------CCCCCCCCCCHH
Q 039376          203 LVKYNKNL------------------------------------------------------------PNMRNRIGQCPI  222 (289)
Q Consensus       203 Ll~~g~~i------------------------------------------------------------~~~~~~~g~t~L  222 (289)
                      |++.++..                                                            ++..+..|+|||
T Consensus       422 Lis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPL  501 (764)
T PHA02716        422 LISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPL  501 (764)
T ss_pred             HHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHH
Confidence            87754310                                                            134567899999


Q ss_pred             HHHHHcCCHH-----HHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376          223 HCAARSGHRE-----TVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL  274 (289)
Q Consensus       223 ~~A~~~~~~~-----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~  274 (289)
                      |+|+..|+.+     ++++|+++|++++          +++.+|+||||+|+.+|++
T Consensus       502 h~Aa~~g~~~~v~~e~~k~LL~~GADIN----------~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        502 HVSIISHTNANIVMDSFVYLLSIQYNIN----------IPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             HHHHHcCCccchhHHHHHHHHhCCCCCc----------ccCCCCCCHHHHHHHcCCc
Confidence            9999998764     5599999999999          9999999999999999987

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=1.6e-27  Score=215.29  Aligned_cols=236  Identities=11%  Similarity=0.104  Sum_probs=189.0

Q ss_pred             CCchHHHHHHHhccCCCch---------hhhhcCChhhhhhcccCCCCccchhccccccHHH---hc--CCHHHHHHHHH
Q 039376           37 KNEDEIVKMKQKDFAQPSS---------KLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQ---VK--TSEDWFREMVE  102 (289)
Q Consensus        37 ~~~~~iv~~L~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~Ll~  102 (289)
                      ....++|++|++.|+++..         ..+...+..+++++|+..|++++.++..+.++.+   ..  ...+++++|++
T Consensus        49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~  128 (446)
T PHA02946         49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ  128 (446)
T ss_pred             CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            4467899999999965543         5667778889999999999999988888777643   22  34789999999


Q ss_pred             cCCcCC----CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcc
Q 039376          103 TGVKVD----LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLE  178 (289)
Q Consensus       103 ~g~~~~----~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~  178 (289)
                      +|++++    ..|.|||| |+..|+.++++.|++ .+++++.+ +..|+||||+|+..++ ...+++++|++.  |++++
T Consensus       129 ~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~-~gad~~~~-d~~G~t~Lh~A~~~~~-~~~~~v~~Ll~~--Gadin  202 (446)
T PHA02946        129 YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS-IGFEARIV-DKFGKNHIHRHLMSDN-PKASTISWMMKL--GISPS  202 (446)
T ss_pred             cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh-cccccccc-CCCCCCHHHHHHHhcC-CCHHHHHHHHHc--CCCCc
Confidence            999874    47899997 677799999999998 68999999 9999999999887543 006899999999  99999


Q ss_pred             ccCCCCCCHHHHHHHhC--CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhcCCCccccc-cc----
Q 039376          179 ETDTSGGTPLTSAAIVG--NTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH-RETVEYLLSVTGVEEEDS-HE----  250 (289)
Q Consensus       179 ~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~-~~----  250 (289)
                      .+|..|.||||+|+..|  +.+++++|+. |+++ +.+|..|+||||+|+..++ .+++++|+++|++.+... ..    
T Consensus       203 ~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~  280 (446)
T PHA02946        203 KPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFY  280 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHc
Confidence            99999999999999986  7899999985 8995 9999999999999999988 589999999998754111 00    


Q ss_pred             -C-CC---Cccc-ccccchHHHHHHHhCCCCccccc
Q 039376          251 -K-YS---NPFA-GECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       251 -~-~~---~~~~-~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                       . ..   +... ...|.||||+|+.+|+.++..++
T Consensus       281 ~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~L  316 (446)
T PHA02946        281 DRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYL  316 (446)
T ss_pred             CchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHH
Confidence             0 00   0011 13577999999999998865544

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=3.5e-27  Score=213.10  Aligned_cols=220  Identities=9%  Similarity=0.087  Sum_probs=183.4

Q ss_pred             cCCchHHHHHHHhccCCC----chhhhh--cCChhhhhhcccCCCCccchhccccccH---HHhcCCHHHHHHHHHcCCc
Q 039376           36 SKNEDEIVKMKQKDFAQP----SSKLVV--GKKEDEITEMKPANDPIIEVKSHERQQI---KQVKTSEDWFREMVETGVK  106 (289)
Q Consensus        36 ~~~~~~iv~~L~~~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Ll~~g~~  106 (289)
                      ..+..+.++.+++.....    ......  .....+++++++..+++++.++..+.++   |+..++.+++++|+++|++
T Consensus        18 ~~~n~~~~~~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd   97 (446)
T PHA02946         18 NSKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD   97 (446)
T ss_pred             ccCcHHHHHHHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            345667777777644211    112222  3345678999999999999888777654   7788999999999999998


Q ss_pred             C---CCCCchHHHHHHHcCC--HHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC
Q 039376          107 V---DLGEHPQLRRALVRKD--WKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD  181 (289)
Q Consensus       107 ~---~~~g~t~Lh~A~~~g~--~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~  181 (289)
                      +   |..|.||||+|+..++  .+++++|++ .|++++...+..|.|||| |+..++   .+++++|++.  |++++.+|
T Consensus        98 in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~d~~g~tpL~-aa~~~~---~~vv~~Ll~~--gad~~~~d  170 (446)
T PHA02946         98 PNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSVDEEGCGPLL-ACTDPS---ERVFKKIMSI--GFEARIVD  170 (446)
T ss_pred             CCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCcccccCCCCCcHHH-HHHCCC---hHHHHHHHhc--cccccccC
Confidence            7   5689999999998764  789999998 689988643889999998 667788   9999999999  99999999


Q ss_pred             CCCCCHHHHHHHhCC--HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCcccccccCCCCccc
Q 039376          182 TSGGTPLTSAAIVGN--TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG--HRETVEYLLSVTGVEEEDSHEKYSNPFA  257 (289)
Q Consensus       182 ~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  257 (289)
                      ..|+||||+|+..++  .+++++|++.|+++ +.+|..|+||||+|+..+  +.+++++|+. |++++          .+
T Consensus       171 ~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin----------~~  238 (446)
T PHA02946        171 KFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN----------KQ  238 (446)
T ss_pred             CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC----------CC
Confidence            999999999887654  68999999999995 999999999999999876  8899999995 89999          99


Q ss_pred             ccccchHHHHHHHhCCC
Q 039376          258 GECGLKLLEILIEFNFL  274 (289)
Q Consensus       258 ~~~g~~~l~~a~~~g~~  274 (289)
                      +..|.||||+|+..+..
T Consensus       239 d~~G~TpLh~A~~~~~~  255 (446)
T PHA02946        239 NKFGDSPLTLLIKTLSP  255 (446)
T ss_pred             CCCCCCHHHHHHHhCCh
Confidence            99999999999998764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=8.4e-28  Score=213.29  Aligned_cols=174  Identities=22%  Similarity=0.187  Sum_probs=162.6

Q ss_pred             HHhcCCHHHHHHHHHc-CCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           88 KQVKTSEDWFREMVET-GVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        88 ~~~~~~~~~~~~Ll~~-g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      |...|.++.++.+++. |.++   |..|.|+|||||.+++++++++|++ +++++|......+.||||+|+++|+   +.
T Consensus        51 A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~gG~l~stPLHWAar~G~---~~  126 (600)
T KOG0509|consen   51 ATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIGGVLGSTPLHWAARNGH---IS  126 (600)
T ss_pred             HhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccCCCCCCCcchHHHHcCc---HH
Confidence            6677889999999998 7765   6799999999999999999999999 6999999845789999999999999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  243 (289)
                      +|++|++.  |++++.+|..|.+++|.|++.|+..++-+|+.+++++ +.+|.+|+||||+|+.+|+...++.|+..|+.
T Consensus       127 vv~lLlqh--GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  127 VVDLLLQH--GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             HHHHHHHc--CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            99999999  9999999999999999999999999999999999995 99999999999999999999989999999999


Q ss_pred             cccccccCCCCcccc-cccchHHHHHHHhCCCCccc
Q 039376          244 EEEDSHEKYSNPFAG-ECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       244 ~~~~~~~~~~~~~~~-~~g~~~l~~a~~~g~~~~~~  278 (289)
                      +.          .+| ..|.||||.|+..|......
T Consensus       204 ~~----------~~d~~~g~TpLHwa~~~gN~~~v~  229 (600)
T KOG0509|consen  204 LL----------LTDDNHGNTPLHWAVVGGNLTAVK  229 (600)
T ss_pred             cc----------ccccccCCchHHHHHhcCCcceEe
Confidence            99          877 89999999999999988544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2e-26  Score=219.70  Aligned_cols=160  Identities=15%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             HHHHHHHHcCCcC---CCCCchHHHHHHHcC-CHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC-CchHHHHHHHHH
Q 039376           95 DWFREMVETGVKV---DLGEHPQLRRALVRK-DWKEVERFISENPDTLYAKFTESCGTLFHSMANIN-EDEAHRLLDEFL  169 (289)
Q Consensus        95 ~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g-~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g-~~~~~~~v~~Ll  169 (289)
                      ++++.|++.|+++   |..|.||||+|++.| ..++++.|+. .+++++.. +..|.||||+|+..+ .   .+++.+|+
T Consensus       288 ~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~-~gadin~~-d~~g~TpLh~A~~~~~~---~~iv~lLl  362 (682)
T PHA02876        288 RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM-LGADVNAA-DRLYITPLHQASTLDRN---KDIVITLL  362 (682)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHH-cCCCCCCc-ccCCCcHHHHHHHhCCc---HHHHHHHH
Confidence            3555555555544   334555555555555 3455554444 34555544 455555555555432 3   44555555


Q ss_pred             hccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhcCCCccccc
Q 039376          170 DMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH-RETVEYLLSVTGVEEEDS  248 (289)
Q Consensus       170 ~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~  248 (289)
                      +.  |++++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++ ..++++|+++|++++   
T Consensus       363 ~~--gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin---  436 (682)
T PHA02876        363 EL--GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN---  436 (682)
T ss_pred             Hc--CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC---
Confidence            55  5555555555555555555555555555555555553 4444444455554443332 234444555555544   


Q ss_pred             ccCCCCcccccccchHHHHHHHhC
Q 039376          249 HEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       249 ~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                             .++..|+||||+|+..|
T Consensus       437 -------~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        437 -------SKNKDLSTPLHYACKKN  453 (682)
T ss_pred             -------cCCCCCChHHHHHHHhC
Confidence                   56667777777777655

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=2.6e-27  Score=221.41  Aligned_cols=188  Identities=15%  Similarity=0.139  Sum_probs=157.5

Q ss_pred             ChhhhhhcccCCC-Cccchh-ccccccHHH-----hcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCC--HHHHHH
Q 039376           62 KEDEITEMKPAND-PIIEVK-SHERQQIKQ-----VKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKD--WKEVER  129 (289)
Q Consensus        62 ~~~~~~~~l~~~~-~~~~~~-~~~~~~~~~-----~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~--~~~v~~  129 (289)
                      .+.+++++++..+ ++++.. +..+.++.+     ..++.+++++|+++|+++   |..|.||||+|++.|+  .+++++
T Consensus       153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            4456666666666 666665 444444432     234678999999999987   5579999999999995  489999


Q ss_pred             HHhhCCCCcccccCCCCChHHHHHH-------------------------------------hcCCchHHHHHHHHHhcc
Q 039376          130 FISENPDTLYAKFTESCGTLFHSMA-------------------------------------NINEDEAHRLLDEFLDMI  172 (289)
Q Consensus       130 ll~~~~~~~~~~~~~~~~t~Lh~A~-------------------------------------~~g~~~~~~~v~~Ll~~~  172 (289)
                      |++ .|++++.+ +..|+||||+|+                                     ..|+   .+++++|++. 
T Consensus       233 LLe-~GADVN~k-D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~---leiVklLLe~-  306 (764)
T PHA02716        233 IIE-LGGDMDMK-CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNID---ISVVYSFLQP-  306 (764)
T ss_pred             HHH-cCCCCCCC-CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCC---HHHHHHHHhC-
Confidence            998 68999999 999999999753                                     4467   8899999999 


Q ss_pred             CCCCccccCCCCCCHHHHHHH--hCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH--------------cCCHHHHHH
Q 039376          173 SPLDLEETDTSGGTPLTSAAI--VGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAAR--------------SGHRETVEY  236 (289)
Q Consensus       173 ~g~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~--------------~~~~~~~~~  236 (289)
                       |++++.+|..|+||||+|+.  .++.+++++|+++|+++ +.+|..|+||||+|+.              .++.+++++
T Consensus       307 -GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVkl  384 (764)
T PHA02716        307 -GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQC  384 (764)
T ss_pred             -CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHH
Confidence             99999999999999999875  45789999999999996 9999999999999875              378999999


Q ss_pred             HHhcCCCcccccccCCCCcccccccchHHHH
Q 039376          237 LLSVTGVEEEDSHEKYSNPFAGECGLKLLEI  267 (289)
Q Consensus       237 Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~  267 (289)
                      |+++|++++          .++..|.||||.
T Consensus       385 LL~~GADIn----------~kn~~G~TPLh~  405 (764)
T PHA02716        385 LISLGADIT----------AVNCLGYTPLTS  405 (764)
T ss_pred             HHHCCCCCC----------CcCCCCCChHHH
Confidence            999999999          999999999993

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1e-26  Score=213.55  Aligned_cols=224  Identities=15%  Similarity=0.124  Sum_probs=144.6

Q ss_pred             hcCCchHHHHHHHhccCCCchhh---------hhc-----CChhhhhhcccCCCCccchhccccccH---HHhc---CCH
Q 039376           35 DSKNEDEIVKMKQKDFAQPSSKL---------VVG-----KKEDEITEMKPANDPIIEVKSHERQQI---KQVK---TSE   94 (289)
Q Consensus        35 ~~~~~~~iv~~L~~~~~~~~~~~---------~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~---~~~   94 (289)
                      ...+..++|++|+++|++.....         +..     .+..++++++...|++++.++..+.++   ++..   ++.
T Consensus        46 ~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~  125 (489)
T PHA02798         46 RDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNL  125 (489)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChH
Confidence            33456777777777776553321         111     123455566666666666655555543   2222   245


Q ss_pred             HHHHHHHHcCCcC---CCCCchHHHHHHHcCC---HHHHHHHHhhCCCCcccccCCCCChHHHHHHhc----CCchHHHH
Q 039376           95 DWFREMVETGVKV---DLGEHPQLRRALVRKD---WKEVERFISENPDTLYAKFTESCGTLFHSMANI----NEDEAHRL  164 (289)
Q Consensus        95 ~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~---~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~----g~~~~~~~  164 (289)
                      +++++|+++|+++   |..|.||||+|++.|+   .+++++|++ .|++++...+..|.||||.++..    ++   .++
T Consensus       126 ~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~-~gadin~~~~~~~~t~Lh~~~~~~~~~~~---~~i  201 (489)
T PHA02798        126 EILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE-KGVDINTHNNKEKYDTLHCYFKYNIDRID---ADI  201 (489)
T ss_pred             HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH-hCCCcccccCcCCCcHHHHHHHhccccCC---HHH
Confidence            6666666666655   3456666666666665   666666665 35666555234456666665543    24   566


Q ss_pred             HHHHHhccCCCCccccCCCCCCHHH-------HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 039376          165 LDEFLDMISPLDLEETDTSGGTPLT-------SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL  237 (289)
Q Consensus       165 v~~Ll~~~~g~~~~~~~~~g~t~L~-------~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~L  237 (289)
                      +++|++.  |++++..+..|.++++       ++...+..+++.+|+. ++++ +.+|..|+||||+|+.+|+.+++++|
T Consensus       202 vk~Li~~--Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~~G~TPL~~A~~~~~~~~v~~L  277 (489)
T PHA02798        202 LKLFVDN--GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDI-NQVDELGFNPLYYSVSHNNRKIFEYL  277 (489)
T ss_pred             HHHHHHC--CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCC-CCcCcCCccHHHHHHHcCcHHHHHHH
Confidence            6666666  6666666655555554       1223344555555544 4664 78889999999999999999999999


Q ss_pred             HhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          238 LSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       238 l~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                      +++|++++          ..+..|.|||++|+.+|..++
T Consensus       278 L~~GAdin----------~~d~~G~TpL~~A~~~~~~~i  306 (489)
T PHA02798        278 LQLGGDIN----------IITELGNTCLFTAFENESKFI  306 (489)
T ss_pred             HHcCCccc----------ccCCCCCcHHHHHHHcCcHHH
Confidence            99999999          999999999999999987663

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.4e-26  Score=218.13  Aligned_cols=220  Identities=16%  Similarity=0.127  Sum_probs=176.4

Q ss_pred             cCCchHHHHHHHhccCCC---------chhhhhcCChhhhhhcccCCCCccchhccccccH---H---------------
Q 039376           36 SKNEDEIVKMKQKDFAQP---------SSKLVVGKKEDEITEMKPANDPIIEVKSHERQQI---K---------------   88 (289)
Q Consensus        36 ~~~~~~iv~~L~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~---------------   88 (289)
                      ..++.+++++|++.|++.         ....++..+..++++++...|++.+..+..+.++   +               
T Consensus       154 ~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~  233 (682)
T PHA02876        154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDN  233 (682)
T ss_pred             HCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            456667777777666433         2345555666666666666666555444333321   2               


Q ss_pred             --------------HhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCH-HHHHHHHhhCCCCcccccCCCCChHH
Q 039376           89 --------------QVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDW-KEVERFISENPDTLYAKFTESCGTLF  150 (289)
Q Consensus        89 --------------~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~-~~v~~ll~~~~~~~~~~~~~~~~t~L  150 (289)
                                    ...++.+++++|++.|+++   +..|.||||+|+..|+. ++++.|++ .+++++.+ +..|.|||
T Consensus       234 ~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~-~gadin~~-d~~g~TpL  311 (682)
T PHA02876        234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLE-RGADVNAK-NIKGETPL  311 (682)
T ss_pred             CCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHH-CCCCCCCc-CCCCCCHH
Confidence                          3344555666667777766   44799999999999997 57777777 68999998 99999999


Q ss_pred             HHHHhcC-CchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhC-CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Q 039376          151 HSMANIN-EDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVG-NTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS  228 (289)
Q Consensus       151 h~A~~~g-~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~  228 (289)
                      |+|+..| .   .+++++|+..  |++++.++..|.||||+|+..+ ..+++++|++.|+++ +.++..|+||||+|+..
T Consensus       312 h~Aa~~g~~---~~~v~~Ll~~--gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~~  385 (682)
T PHA02876        312 YLMAKNGYD---TENIRTLIML--GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAVR  385 (682)
T ss_pred             HHHHHhCCC---HHHHHHHHHc--CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHHc
Confidence            9999999 6   8999999999  9999999999999999999864 688999999999995 99999999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376          229 GHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF  273 (289)
Q Consensus       229 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~  273 (289)
                      |+.+++++|+++|++++          ..+..|.||||+|+..+.
T Consensus       386 ~~~~iv~~Ll~~gad~~----------~~~~~g~T~Lh~A~~~~~  420 (682)
T PHA02876        386 NNVVIINTLLDYGADIE----------ALSQKIGTALHFALCGTN  420 (682)
T ss_pred             CCHHHHHHHHHCCCCcc----------ccCCCCCchHHHHHHcCC
Confidence            99999999999999999          888999999999987664

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=211.54  Aligned_cols=196  Identities=15%  Similarity=0.177  Sum_probs=147.7

Q ss_pred             hhhhcCChhhhhhcccCCCCccchhccccccH---HHhcCCHHHHHHHHHcCCcCC-CCCchHHHHHHHcCCHHH-----
Q 039376           56 KLVVGKKEDEITEMKPANDPIIEVKSHERQQI---KQVKTSEDWFREMVETGVKVD-LGEHPQLRRALVRKDWKE-----  126 (289)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Ll~~g~~~~-~~g~t~Lh~A~~~g~~~~-----  126 (289)
                      ..++..+..++++++...|++++..+..+.++   |+..++.++++.|++.+...+ ..+.+|++.|+..|+.++     
T Consensus        42 h~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll  121 (477)
T PHA02878         42 HQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIIL  121 (477)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHH
Confidence            44455555555555555555555544444332   444555555555555443321 234455555555555443     


Q ss_pred             ----------------------------HHHHHhhCCCCcccccCCC-CChHHHHHHhcCCchHHHHHHHHHhccCCCCc
Q 039376          127 ----------------------------VERFISENPDTLYAKFTES-CGTLFHSMANINEDEAHRLLDEFLDMISPLDL  177 (289)
Q Consensus       127 ----------------------------v~~ll~~~~~~~~~~~~~~-~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~  177 (289)
                                                  +++|++ .|++++.+ +.. |.||||+|+..|+   .+++++|++.  |+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~-~gadin~~-~~~~g~tpLh~A~~~~~---~~iv~~Ll~~--gad~  194 (477)
T PHA02878        122 TNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLS-YGADINMK-DRHKGNTALHYATENKD---QRLTELLLSY--GANV  194 (477)
T ss_pred             hCcccCcccCcHHHHhhccchhhHHHHHHHHHHH-cCCCCCcc-CCCCCCCHHHHHHhCCC---HHHHHHHHHC--CCCC
Confidence                                        333444 46677777 666 9999999999999   9999999999  9999


Q ss_pred             cccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCcccccccCCCCcc
Q 039376          178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS-GHRETVEYLLSVTGVEEEDSHEKYSNPF  256 (289)
Q Consensus       178 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  256 (289)
                      +.++..|.||||+|+..|+.+++++|++.|+++ +.++..|+||||+|+.. ++.+++++|+++|++++          .
T Consensus       195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn----------~  263 (477)
T PHA02878        195 NIPDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN----------A  263 (477)
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC----------c
Confidence            999999999999999999999999999999996 99999999999999975 79999999999999999          7


Q ss_pred             ccc-ccchHHHHHH
Q 039376          257 AGE-CGLKLLEILI  269 (289)
Q Consensus       257 ~~~-~g~~~l~~a~  269 (289)
                      .+. .|.||||+|.
T Consensus       264 ~~~~~g~TpLh~A~  277 (477)
T PHA02878        264 KSYILGLTALHSSI  277 (477)
T ss_pred             cCCCCCCCHHHHHc
Confidence            665 7999999994

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.5e-26  Score=211.21  Aligned_cols=225  Identities=12%  Similarity=0.105  Sum_probs=110.5

Q ss_pred             cCCchHHHHHHHhccCCCchhh--------hhc-C-ChhhhhhcccCCCCccchhcccccc--HHHh------cCCHHHH
Q 039376           36 SKNEDEIVKMKQKDFAQPSSKL--------VVG-K-KEDEITEMKPANDPIIEVKSHERQQ--IKQV------KTSEDWF   97 (289)
Q Consensus        36 ~~~~~~iv~~L~~~~~~~~~~~--------~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~------~~~~~~~   97 (289)
                      .....++|++|++.|++.....        ... . ...+++++|++.|++++........  .+..      .+..+++
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv   91 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIV   91 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHH
Confidence            3578899999999887654321        111 1 1234444444444444433211111  1111      1223444


Q ss_pred             HHHHHcCCcC---CCCCchHHHHHHHc---CCHHHHHHHHhhCCCCc-ccccCCCCChHHHHHHhc--CCchHHHHHHHH
Q 039376           98 REMVETGVKV---DLGEHPQLRRALVR---KDWKEVERFISENPDTL-YAKFTESCGTLFHSMANI--NEDEAHRLLDEF  168 (289)
Q Consensus        98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~-~~~~~~~~~t~Lh~A~~~--g~~~~~~~v~~L  168 (289)
                      +.|+++|+++   +..|.||||.|+..   |+.+++++|++ .|+++ +.+ +..|+||||+|+..  ++   .+++++|
T Consensus        92 ~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~-~Gadin~~~-d~~g~tpLh~a~~~~~~~---~~iv~~L  166 (494)
T PHA02989         92 KLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLS-KGINVNDVK-NSRGYNLLHMYLESFSVK---KDVIKIL  166 (494)
T ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHH-CCCCccccc-CCCCCCHHHHHHHhccCC---HHHHHHH
Confidence            5555555444   22444555544332   34445554444 34444 344 44455555544432  23   4455555


Q ss_pred             HhccCCCCccc-cCCCCCCHHHHHHHhC----CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc------CCHHHHHHH
Q 039376          169 LDMISPLDLEE-TDTSGGTPLTSAAIVG----NTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS------GHRETVEYL  237 (289)
Q Consensus       169 l~~~~g~~~~~-~~~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~------~~~~~~~~L  237 (289)
                      ++.  |++++. .+..|.||||+|++.+    +.+++++|+++|+++ +..+..|.|+||.++..      +..+++++|
T Consensus       167 l~~--Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l  243 (494)
T PHA02989        167 LSF--GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVLNFI  243 (494)
T ss_pred             HHc--CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcccchHHHHHH
Confidence            554  454444 3444455555444332    444555555555543 44444444555443322      123344433


Q ss_pred             HhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          238 LSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       238 l~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      +. |++++          .++..|+||||+|+..|..++...
T Consensus       244 ~~-~advn----------~~d~~G~TpL~~Aa~~~~~~~v~~  274 (494)
T PHA02989        244 LK-YIKIN----------KKDKKGFNPLLISAKVDNYEAFNY  274 (494)
T ss_pred             Hh-CCCCC----------CCCCCCCCHHHHHHHhcCHHHHHH
Confidence            32 34444          778899999999999998875433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.2e-26  Score=202.54  Aligned_cols=185  Identities=14%  Similarity=0.080  Sum_probs=164.6

Q ss_pred             hhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCC---------CCCchHHHHHHH--cCCHHHHHHHHhhCC
Q 039376           67 TEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVD---------LGEHPQLRRALV--RKDWKEVERFISENP  135 (289)
Q Consensus        67 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~---------~~g~t~Lh~A~~--~g~~~~v~~ll~~~~  135 (289)
                      -++++.+|..++.+...+  +++..+..+++++|+++|+++|         ..++|+||.|+.  .|+.+++++|+. +|
T Consensus        65 ~~~~~~~~~~i~~~~~~~--~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~-~G  141 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR--LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD-HG  141 (437)
T ss_pred             HHHHHHcCcchhhhhhhh--HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH-CC
Confidence            456677888887776666  7888899999999999999866         468999999999  899999999998 79


Q ss_pred             CCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC------CCCCCHHHHHHHhCCHHHHHHHHHcCCC
Q 039376          136 DTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD------TSGGTPLTSAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       136 ~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      ++++..   .+.||+|.|+..++   .+++++|++.  |++.....      ..+.+++|.|+..++.+++++|+++|++
T Consensus       142 ADIn~~---~~~t~lh~A~~~~~---~eIVk~Lls~--Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        142 AVIYKI---ECLNAYFRGICKKE---SSVVEFILNC--GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             CCCCCC---CCCCHHHHHHHcCc---HHHHHHHHhc--CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            999765   44899999999999   9999999999  87432222      3477899999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376          210 LPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF  273 (289)
Q Consensus       210 i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~  273 (289)
                      + +.++..|+||||+|+..|+.+++++|+++|++++          .++..|.||||+|+..|.
T Consensus       214 I-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN----------~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        214 I-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN----------AVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             c-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCCHHHHHHHcCC
Confidence            6 9999999999999999999999999999999999          999999999999999985

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.8e-25  Score=196.85  Aligned_cols=197  Identities=15%  Similarity=0.055  Sum_probs=165.8

Q ss_pred             HHHHHHhccCCCch----hhhhcCChhhhhhcccCCCCccc------hhccccccH---HHh--cCCHHHHHHHHHcCCc
Q 039376           42 IVKMKQKDFAQPSS----KLVVGKKEDEITEMKPANDPIIE------VKSHERQQI---KQV--KTSEDWFREMVETGVK  106 (289)
Q Consensus        42 iv~~L~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~---~~~--~~~~~~~~~Ll~~g~~  106 (289)
                      ...|++++|.+-..    ..+...+.+++.+++++.++..+      .+.....++   +..  .++.+++++|+++|++
T Consensus        64 ~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD  143 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDRLFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV  143 (437)
T ss_pred             HHHHHHHcCcchhhhhhhhHHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC
Confidence            45778888764443    35566788899999999998866      433343443   334  6899999999999999


Q ss_pred             CCC-CCchHHHHHHHcCCHHHHHHHHhhCCCCccccc-----CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcccc
Q 039376          107 VDL-GEHPQLRRALVRKDWKEVERFISENPDTLYAKF-----TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEET  180 (289)
Q Consensus       107 ~~~-~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~-----~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~  180 (289)
                      ++. .+.||||+|+..|+.+++++|+.. |++.....     +..+.+++|.|+..++   .+++++|++.  |++++.+
T Consensus       144 In~~~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~---~eIve~LIs~--GADIN~k  217 (437)
T PHA02795        144 IYKIECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTV---LEIYKLCIPY--IEDINQL  217 (437)
T ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCH---HHHHHHHHhC--cCCcCcC
Confidence            975 668999999999999999999994 65332221     1347889999999999   9999999999  9999999


Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC--------CHHHHHHHHhcCCCcc
Q 039376          181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG--------HRETVEYLLSVTGVEE  245 (289)
Q Consensus       181 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~--------~~~~~~~Ll~~g~~~~  245 (289)
                      +..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|        +.+++++|+++|++++
T Consensus       218 D~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        218 DAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999996 999999999999999988        4699999999999988

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=7.5e-26  Score=205.00  Aligned_cols=220  Identities=19%  Similarity=0.193  Sum_probs=175.5

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCch---------hhhhcCChhhhhhcccC-----CCCccchhccc---cccHHHhcC
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSS---------KLVVGKKEDEITEMKPA-----NDPIIEVKSHE---RQQIKQVKT   92 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~---------~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~---~~~~~~~~~   92 (289)
                      ...++...+..|+.+.|++.++++..         +.++.++..+..|+...     ....++....+   ..+.|+..+
T Consensus       157 pLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g  236 (929)
T KOG0510|consen  157 PLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGG  236 (929)
T ss_pred             hhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcC
Confidence            45566677778888888988876644         34455555565665554     23333333333   344688999


Q ss_pred             CHHHHHHHHHcCCcC------------------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHH
Q 039376           93 SEDWFREMVETGVKV------------------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMA  154 (289)
Q Consensus        93 ~~~~~~~Ll~~g~~~------------------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~  154 (289)
                      ++++++.+++.|...                  |..|+||||+|++.|+.+++..|+. .|++++.+ +.++.||||.|+
T Consensus       237 ~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~-~Ga~I~~k-n~d~~spLH~AA  314 (929)
T KOG0510|consen  237 DIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLG-FGASINSK-NKDEESPLHFAA  314 (929)
T ss_pred             CHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHH-cCCccccc-CCCCCCchHHHH
Confidence            999999999887642                  5689999999999999999999998 69999999 899999999999


Q ss_pred             hcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC--CCCCCCCCHHHHHHHcCCHH
Q 039376          155 NINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPN--MRNRIGQCPIHCAARSGHRE  232 (289)
Q Consensus       155 ~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~--~~~~~g~t~L~~A~~~~~~~  232 (289)
                      ++|+   +..|+-||+.++-..++..|..|.||||.|+..|+..++++|+.+|+...+  ..|.+|.||||.|+..|+..
T Consensus       315 ~yg~---~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  315 IYGR---INTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             Hccc---HHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHH
Confidence            9999   999999999432356788899999999999999999999999999998633  34899999999999999999


Q ss_pred             HHHHHHhcCCCcc-cccccCCCC
Q 039376          233 TVEYLLSVTGVEE-EDSHEKYSN  254 (289)
Q Consensus       233 ~~~~Ll~~g~~~~-~~~~~~~~~  254 (289)
                      ++++|+.+|+++. ++.++++++
T Consensus       392 av~~Li~~Ga~I~~~n~~g~SA~  414 (929)
T KOG0510|consen  392 AVQKLISHGADIGVKNKKGKSAF  414 (929)
T ss_pred             HHHHHHHcCCceeeccccccccc
Confidence            9999999999997 333444433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=3.7e-26  Score=195.82  Aligned_cols=192  Identities=16%  Similarity=0.170  Sum_probs=162.6

Q ss_pred             chhhhhhcCCchHHHHHHHhcc-CCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC
Q 039376           29 PSSRLLDSKNEDEIVKMKQKDF-AQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV  107 (289)
Q Consensus        29 ~~~~~~~~~~~~~iv~~L~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~  107 (289)
                      +...+....|+.++|+||+++. +++...-.+..+.           ..+  ......+.|.-.|++++++.|+++|+++
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDg-----------e~I--egappLWaAsaAGHl~vVk~L~~~ga~V  110 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDG-----------ETI--EGAPPLWAASAAGHLEVVKLLLRRGASV  110 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCC-----------ccc--CCCchhhHHhccCcHHHHHHHHHhcCcc
Confidence            3455667889999999999844 4554433232221           111  1122346688889999999999999998


Q ss_pred             CC---CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCC
Q 039376          108 DL---GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSG  184 (289)
Q Consensus       108 ~~---~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g  184 (289)
                      |.   ...|||..||.-|++++|++|++ +++++++. ++.|.|+||+||..|+   .+|+++|+++  |++++.++..|
T Consensus       111 N~tT~TNStPLraACfDG~leivKyLvE-~gad~~Ia-nrhGhTcLmIa~ykGh---~~I~qyLle~--gADvn~ks~kG  183 (615)
T KOG0508|consen  111 NDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIA-NRHGHTCLMIACYKGH---VDIAQYLLEQ--GADVNAKSYKG  183 (615)
T ss_pred             ccccccCCccHHHHHhcchhHHHHHHHH-cCCCCccc-ccCCCeeEEeeeccCc---hHHHHHHHHh--CCCcchhcccC
Confidence            65   45699999999999999999997 79999999 9999999999999999   9999999999  99999999999


Q ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 039376          185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG  242 (289)
Q Consensus       185 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  242 (289)
                      +|+||.|+++|+.+++++|+++|+.+  ..|..|.|||..|+..|+.+++++|++...
T Consensus       184 NTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~~~~  239 (615)
T KOG0508|consen  184 NTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQCET  239 (615)
T ss_pred             chHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhcCCc
Confidence            99999999999999999999999986  577789999999999999999999997444

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=4.6e-25  Score=199.97  Aligned_cols=233  Identities=17%  Similarity=0.157  Sum_probs=188.3

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCch---------hhhhcCChhhhhhcccCCCCccchhccccc---cHHHhcCCHHHH
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSS---------KLVVGKKEDEITEMKPANDPIIEVKSHERQ---QIKQVKTSEDWF   97 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~   97 (289)
                      ...++...+..+.++.|+..+.++..         +.+...+..+....++..++++-..+..+.   +.++..+..++.
T Consensus       124 plh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~m  203 (929)
T KOG0510|consen  124 PLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECM  203 (929)
T ss_pred             chhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhh
Confidence            35566677888888888888855543         334444555666677777777655544443   347888999999


Q ss_pred             HHHHH-----cCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCc--------------ccccCCCCChHHHHHHh
Q 039376           98 REMVE-----TGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTL--------------YAKFTESCGTLFHSMAN  155 (289)
Q Consensus        98 ~~Ll~-----~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~--------------~~~~~~~~~t~Lh~A~~  155 (289)
                      +.++.     ++..+   +..|.||||.|+..|++++++.+|+.....-              +.. |..|.||||+||+
T Consensus       204 Ei~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~-d~dg~tpLH~a~r  282 (929)
T KOG0510|consen  204 EIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDE-DNDGCTPLHYAAR  282 (929)
T ss_pred             hhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcc-cccCCchHHHHHH
Confidence            98887     44444   5578899999999999999999998533222              223 7899999999999


Q ss_pred             cCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 039376          156 INEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARSGHRETV  234 (289)
Q Consensus       156 ~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~~~~~~~  234 (289)
                      .|+   .++++.|+..  |++++.++.++.||||.|++.|+...|+.|++ .+.-+.+..|..|.||||.|++.||..++
T Consensus       283 ~G~---~~svd~Ll~~--Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~  357 (929)
T KOG0510|consen  283 QGG---PESVDNLLGF--GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVV  357 (929)
T ss_pred             cCC---hhHHHHHHHc--CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHH
Confidence            999   9999999999  99999999999999999999999999999998 66666688999999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          235 EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       235 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                      ++|+..|+.....+       -.|.+|.|+||.|+..|+..
T Consensus       358 qlLl~~GA~~~~~~-------e~D~dg~TaLH~Aa~~g~~~  391 (929)
T KOG0510|consen  358 QLLLNKGALFLNMS-------EADSDGNTALHLAAKYGNTS  391 (929)
T ss_pred             HHHHhcChhhhccc-------ccccCCchhhhHHHHhccHH
Confidence            99999999976111       23889999999999999866

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=3.1e-25  Score=211.67  Aligned_cols=230  Identities=18%  Similarity=0.212  Sum_probs=199.0

Q ss_pred             chhhhhhcCCchHHHHHHHhccCCCchh---------hhhcCChhhhhhcccCCCCccchhcccccc---HHHhcC-CHH
Q 039376           29 PSSRLLDSKNEDEIVKMKQKDFAQPSSK---------LVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKT-SED   95 (289)
Q Consensus        29 ~~~~~~~~~~~~~iv~~L~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~-~~~   95 (289)
                      ....++...+..+++.+++..+..+...         .........+++++...++..+..+..+..   ++...+ ..+
T Consensus       376 ~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~  455 (1143)
T KOG4177|consen  376 TPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQ  455 (1143)
T ss_pred             cchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhh
Confidence            4566777888999999999988765442         333445566677777778877777776655   355666 677


Q ss_pred             HHHHHHHcCCcCCC---CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhcc
Q 039376           96 WFREMVETGVKVDL---GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMI  172 (289)
Q Consensus        96 ~~~~Ll~~g~~~~~---~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~  172 (289)
                      ....+++.|++++.   .|.||||+|+..|+.++++.+++ .++..+.. ...+.+++|.|...+.   ..+++.+++. 
T Consensus       456 ~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle-~~~~~~~~-~~~~l~~lhla~~~~~---v~~~~~l~~~-  529 (1143)
T KOG4177|consen  456 IARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLE-GGANDNLD-AKKGLTPLHLAADEDT---VKVAKILLEH-  529 (1143)
T ss_pred             hhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhh-cCCccCcc-chhccchhhhhhhhhh---HHHHHHHhhc-
Confidence            88888899988754   89999999999999999998887 56666666 7889999999999999   9999999999 


Q ss_pred             CCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCC
Q 039376          173 SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKY  252 (289)
Q Consensus       173 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  252 (289)
                       |++++.++..|.||||.||..|++.+|++|+++|+++ +.+++.|+||||.||..|+.+|+++|+++|++++       
T Consensus       530 -ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn-------  600 (1143)
T KOG4177|consen  530 -GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN-------  600 (1143)
T ss_pred             -CCceehhcccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC-------
Confidence             9999999999999999999999999999999999996 9999999999999999999999999999999999       


Q ss_pred             CCcccccccchHHHHHHHhCCCCc
Q 039376          253 SNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       253 ~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                         ..+.+|.|||++|+..|++++
T Consensus       601 ---a~d~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  601 ---AADLDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             ---cccccCcchhHHHHHhcccch
Confidence               999999999999999999985

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-25  Score=191.96  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=158.0

Q ss_pred             HHHhcCCHHHHHHHHH-cCCcC-----------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHH
Q 039376           87 IKQVKTSEDWFREMVE-TGVKV-----------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMA  154 (289)
Q Consensus        87 ~~~~~~~~~~~~~Ll~-~g~~~-----------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~  154 (289)
                      ++...|+.+++++|++ .++++           ...|-+||-.|+..||+++|+.|+. .++++|.. ....-|||--||
T Consensus        48 iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~-~ga~VN~t-T~TNStPLraAC  125 (615)
T KOG0508|consen   48 IAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR-RGASVNDT-TRTNSTPLRAAC  125 (615)
T ss_pred             eehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH-hcCccccc-cccCCccHHHHH
Confidence            4668889999999998 45554           2367799999999999999999998 57999988 778889999999


Q ss_pred             hcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 039376          155 NINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV  234 (289)
Q Consensus       155 ~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~  234 (289)
                      .-|+   .++|+||++.  |+|++..++.|.|-||+||..|+.+++++|++.|+++ +.++..|.|+||.++..|+++++
T Consensus       126 fDG~---leivKyLvE~--gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  126 FDGH---LEIVKYLVEH--GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             hcch---hHHHHHHHHc--CCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHH
Confidence            9999   9999999999  9999999999999999999999999999999999995 99999999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          235 EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       235 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      ++|+.+|+.++           ++..|.|||..|...|+.++...+
T Consensus       200 q~Ll~~ga~i~-----------~d~~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  200 QLLLKHGAKID-----------VDGHGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             HHHHhCCceee-----------ecCCCCchHHHHhhhcchHHHHHH
Confidence            99999999987           555699999999999998854433

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.4e-24  Score=199.37  Aligned_cols=181  Identities=15%  Similarity=0.122  Sum_probs=138.8

Q ss_pred             CCHHHHHHHHHcCCcCC---CCCchHHHHHHHc-----CCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           92 TSEDWFREMVETGVKVD---LGEHPQLRRALVR-----KDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        92 ~~~~~~~~Ll~~g~~~~---~~g~t~Lh~A~~~-----g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      ...+++++|+++|+++|   ..|.||||+|+..     +..+++++|++ .|++++.+ +..|.||||+|+..+.....+
T Consensus        49 ~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~-~GadiN~~-d~~G~TpLh~a~~~~~~~~~~  126 (489)
T PHA02798         49 PSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE-NGADINKK-NSDGETPLYCLLSNGYINNLE  126 (489)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH-CCCCCCCC-CCCcCcHHHHHHHcCCcChHH
Confidence            46778888888888874   5788888888753     56788888887 58888888 888888888888875211178


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCC---HHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHc----CCHHHHH
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGN---TKAAKILVKYNKNLPNMRN-RIGQCPIHCAARS----GHRETVE  235 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~i~~~~~-~~g~t~L~~A~~~----~~~~~~~  235 (289)
                      ++++|++.  |++++.++..|.||||+|+..++   .+++++|+++|+++ +..+ ..|.||||.++..    ++.++++
T Consensus       127 iv~~Ll~~--Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk  203 (489)
T PHA02798        127 ILLFMIEN--GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYFKYNIDRIDADILK  203 (489)
T ss_pred             HHHHHHHc--CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHHHHhccccCCHHHHH
Confidence            88888888  88888888888888888888877   88888888888885 6664 4678888887754    4788888


Q ss_pred             HHHhcCCCccc-ccccCCC----------------------------CcccccccchHHHHHHHhCCCCcc
Q 039376          236 YLLSVTGVEEE-DSHEKYS----------------------------NPFAGECGLKLLEILIEFNFLGQY  277 (289)
Q Consensus       236 ~Ll~~g~~~~~-~~~~~~~----------------------------~~~~~~~g~~~l~~a~~~g~~~~~  277 (289)
                      +|+++|++++. +....+.                            .+.++..|.||||+|+..|..++.
T Consensus       204 ~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v  274 (489)
T PHA02798        204 LFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIF  274 (489)
T ss_pred             HHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHH
Confidence            88888888772 2211111                            124677899999999999987743

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.6e-24  Score=174.94  Aligned_cols=147  Identities=11%  Similarity=0.025  Sum_probs=129.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC--CchHHHHHHHHHhccCCCCccccC-CCCC
Q 039376          109 LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN--EDEAHRLLDEFLDMISPLDLEETD-TSGG  185 (289)
Q Consensus       109 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~~~~v~~Ll~~~~g~~~~~~~-~~g~  185 (289)
                      ..++||||+|++.|+.++|+.|+..    ++.. +..|.||||+|+..+  +   .+++++|++.  |++++.++ ..|.
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~-~~~g~TpLh~a~~~~~~~---~eiv~~Ll~~--gadvn~~~~~~g~   88 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDC-NDLYETPIFSCLEKDKVN---VEILKFLIEN--GADVNFKTRDNNL   88 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh----hhcc-CccCCCHHHHHHHcCCCC---HHHHHHHHHC--CCCCCccCCCCCC
Confidence            3678999999999999999999873    3455 888999999999854  7   9999999999  99999997 5899


Q ss_pred             CHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCcccccccCCCCcccccc
Q 039376          186 TPLTSAAIV---GNTKAAKILVKYNKNLPNMRNRIGQCPIHCAAR--SGHRETVEYLLSVTGVEEEDSHEKYSNPFAGEC  260 (289)
Q Consensus       186 t~L~~A~~~---g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~  260 (289)
                      ||||+|+..   ++.+++++|+++|+++ +.++..|+||||+|+.  .++.+++++|+++|++++          .++..
T Consensus        89 TpLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin----------~~d~~  157 (209)
T PHA02859         89 SALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL----------NKDFD  157 (209)
T ss_pred             CHHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc----------cccCC
Confidence            999998764   4789999999999996 9999999999999886  468999999999999999          99999


Q ss_pred             cchHHHH-HHHhCCCCc
Q 039376          261 GLKLLEI-LIEFNFLGQ  276 (289)
Q Consensus       261 g~~~l~~-a~~~g~~~~  276 (289)
                      |.||||. +...|..++
T Consensus       158 g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859        158 NNNILYSYILFHSDKKI  174 (209)
T ss_pred             CCcHHHHHHHhcCCHHH
Confidence            9999996 455666554

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=197.23  Aligned_cols=165  Identities=8%  Similarity=0.031  Sum_probs=138.5

Q ss_pred             cCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHH----HHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           91 KTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWK----EVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        91 ~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~----~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      .++.++++.|+++|+++   +..|.||||+|+..|+.+    +++.|++.++. .+.. +  ..+++|.|+..++   .+
T Consensus        45 ~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~-~--~~~~~~~a~~~~~---~e  117 (661)
T PHA02917         45 CNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIN-D--FNIFSYMKSKNVD---VD  117 (661)
T ss_pred             cCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCC-C--cchHHHHHhhcCC---HH
Confidence            37799999999999987   457899999999999855    45667764332 3333 2  2366778889999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHH--HhCCHHHHHHHHHcCCCCCCCCCC---CC-----------CCHHHHHHH
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAA--IVGNTKAAKILVKYNKNLPNMRNR---IG-----------QCPIHCAAR  227 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~i~~~~~~---~g-----------~t~L~~A~~  227 (289)
                      +|++|++.  |++++.+|..|+||||+|+  ..|+.+++++|+++|+++ +..+.   .|           .||||+|+.
T Consensus       118 ~vk~Ll~~--Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~  194 (661)
T PHA02917        118 LIKVLVEH--GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYII  194 (661)
T ss_pred             HHHHHHHc--CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHh
Confidence            99999999  9999999999999999654  568999999999999996 76543   33           599999986


Q ss_pred             -----------cCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          228 -----------SGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       228 -----------~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                                 .++.+++++|+++|++++          ..+.+|.||||+|+.+|+.+
T Consensus       195 ~~~~~~~~~~~~~~~eiv~~Li~~Gadvn----------~~d~~G~TpLh~A~~~g~~~  243 (661)
T PHA02917        195 SHLYSESDTRAYVRPEVVKCLINHGIKPS----------SIDKNYCTALQYYIKSSHID  243 (661)
T ss_pred             hcccccccccccCcHHHHHHHHHCCCCcc----------cCCCCCCcHHHHHHHcCCCc
Confidence                       468999999999999999          99999999999999999864

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=192.60  Aligned_cols=226  Identities=10%  Similarity=0.028  Sum_probs=178.4

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCc------h-----------------hhhhcCChhhhhhcccCCCCccchhcccccc
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPS------S-----------------KLVVGKKEDEITEMKPANDPIIEVKSHERQQ   86 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~------~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   86 (289)
                      +..+....+..|||++|++.|+...      .                 .....+...+++++|+++|++++.++..+.+
T Consensus       158 ~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~T  237 (672)
T PHA02730        158 DIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSL  237 (672)
T ss_pred             hhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            4555677899999999999997662      0                 0013455788999999999999999988877


Q ss_pred             HHH-----hcCCHHHHHHHHH--------------------------------cCCcC----------------------
Q 039376           87 IKQ-----VKTSEDWFREMVE--------------------------------TGVKV----------------------  107 (289)
Q Consensus        87 ~~~-----~~~~~~~~~~Ll~--------------------------------~g~~~----------------------  107 (289)
                      +.+     ..++.|++++|++                                +|++.                      
T Consensus       238 pLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  317 (672)
T PHA02730        238 PIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITS  317 (672)
T ss_pred             HHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhcccc
Confidence            654     3345899999999                                56653                      


Q ss_pred             -CCCCch---------------------HHHHHHHcC---CHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc-hH
Q 039376          108 -DLGEHP---------------------QLRRALVRK---DWKEVERFISENPDTLYAKFTESCGTLFHSMANINED-EA  161 (289)
Q Consensus       108 -~~~g~t---------------------~Lh~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~-~~  161 (289)
                       +..|++                     .||.-.+.+   +.+++++|++ +|++++..  ..|.||||+|+..++. -.
T Consensus       318 ~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs-~GAdIN~k--~~G~TpLH~Aa~~nnn~i~  394 (672)
T PHA02730        318 YDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD-NGATMDKT--TDNNYPLHDYFVNNNNIVD  394 (672)
T ss_pred             ccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH-CCCCCCcC--CCCCcHHHHHHHHcCCcch
Confidence             224544                     677777766   5899999998 68999965  5889999998887631 12


Q ss_pred             HHHHHHHHhccCCC--CccccCCCCCCHHHH---HHHhC---------CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Q 039376          162 HRLLDEFLDMISPL--DLEETDTSGGTPLTS---AAIVG---------NTKAAKILVKYNKNLPNMRNRIGQCPIHCAAR  227 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~--~~~~~~~~g~t~L~~---A~~~g---------~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~  227 (289)
                      .+++++|++.  |+  +++.++..|.||||.   |...+         ..+++++|+++|+++ +.+|..|+||||+|+.
T Consensus       395 ~eIvelLIs~--Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADI-NakD~~G~TPLh~Aa~  471 (672)
T PHA02730        395 VNVVRFIVEN--NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDI-DMIDNENKTLLYYAVD  471 (672)
T ss_pred             HHHHHHHHHc--CCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccch-hccCCCCCCHHHHHHH
Confidence            6999999998  76  689899999999984   33232         235699999999996 9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCccccc-ccchHHHHHHHh
Q 039376          228 SGHRETVEYLLSVTGVEEEDSHEKYSNPFAGE-CGLKLLEILIEF  271 (289)
Q Consensus       228 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~-~g~~~l~~a~~~  271 (289)
                      .++.+++++|+++|++++          ..+. .|.||+++|+..
T Consensus       472 ~~~~eive~LI~~GAdIN----------~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        472 VNNIQFARRLLEYGASVN----------TTSRSIINTAIQKSSYR  506 (672)
T ss_pred             hCCHHHHHHHHHCCCCCC----------CCCCcCCcCHHHHHHHh
Confidence            999999999999999999          8886 589999999864

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2e-23  Score=202.17  Aligned_cols=165  Identities=14%  Similarity=0.123  Sum_probs=148.9

Q ss_pred             cHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHH
Q 039376           86 QIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAH  162 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~  162 (289)
                      ..++..++.++++.|++.|+++   |..|.||||+|+..|+.++++.|++ .+++++.+ +..|.||||+|+..|+   .
T Consensus       530 ~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gadin~~-d~~G~TpL~~A~~~g~---~  604 (823)
T PLN03192        530 LTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK-HACNVHIR-DANGNTALWNAISAKH---H  604 (823)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHh-cCCCCCCc-CCCCCCHHHHHHHhCC---H
Confidence            3477889999999999999987   5689999999999999999999998 69999999 9999999999999999   9


Q ss_pred             HHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 039376          163 RLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG  242 (289)
Q Consensus       163 ~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  242 (289)
                      +++++|+..  ++..+  ...+.++||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       605 ~iv~~L~~~--~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        605 KIFRILYHF--ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             HHHHHHHhc--CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            999999987  55443  245679999999999999999999999996 9999999999999999999999999999999


Q ss_pred             CcccccccCCCCccccccc-chHHHHHHH
Q 039376          243 VEEEDSHEKYSNPFAGECG-LKLLEILIE  270 (289)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~g-~~~l~~a~~  270 (289)
                      +++          ..+..| .++.+.+..
T Consensus       680 dv~----------~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        680 DVD----------KANTDDDFSPTELREL  698 (823)
T ss_pred             CCC----------CCCCCCCCCHHHHHHH
Confidence            999          777776 788776643

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.9e-24  Score=179.90  Aligned_cols=154  Identities=19%  Similarity=0.248  Sum_probs=139.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC--CchHHHHHHHHHhccCCCCccccC-CCC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN--EDEAHRLLDEFLDMISPLDLEETD-TSG  184 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~~~~v~~Ll~~~~g~~~~~~~-~~g  184 (289)
                      |.+|.|+||||+.++++++|+.||..+-++++.+ ++-|+||+++|+...  .+...++|..|+..   .++|.+- ..|
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaKAsQ~g  340 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAKASQHG  340 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchhhhhhc
Confidence            7899999999999999999999999988999999 999999999987643  11237889999987   5677764 489


Q ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCCcccccccch
Q 039376          185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGECGLK  263 (289)
Q Consensus       185 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~~g~~  263 (289)
                      .|+|++|+.+|+.++|+.|+..|+++ |.+|.+|.|+|++|+.+||.+++++|| .-++|..          ++|.+|.|
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s----------LtD~DgST  409 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS----------LTDVDGST  409 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccce----------eecCCCch
Confidence            99999999999999999999999997 999999999999999999999999999 6678888          99999999


Q ss_pred             HHHHHHHhCCCCc
Q 039376          264 LLEILIEFNFLGQ  276 (289)
Q Consensus       264 ~l~~a~~~g~~~~  276 (289)
                      +|.+|+..|+-++
T Consensus       410 Al~IAleagh~eI  422 (452)
T KOG0514|consen  410 ALSIALEAGHREI  422 (452)
T ss_pred             hhhhHHhcCchHH
Confidence            9999999999884

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=187.28  Aligned_cols=227  Identities=13%  Similarity=0.100  Sum_probs=168.6

Q ss_pred             cCCchHHHHHHHh-ccCCCch--------------hhhhcCChhhhhhcccCCCCccch-------hccccc--------
Q 039376           36 SKNEDEIVKMKQK-DFAQPSS--------------KLVVGKKEDEITEMKPANDPIIEV-------KSHERQ--------   85 (289)
Q Consensus        36 ~~~~~~iv~~L~~-~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~--------   85 (289)
                      ..+..++|++|+. .+.++..              .........+++++++.+|+..+-       ......        
T Consensus       125 ~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~i  204 (672)
T PHA02730        125 DNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYI  204 (672)
T ss_pred             cCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHH
Confidence            3567778888875 3222211              122334567889999988887741       112222        


Q ss_pred             --cHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHH--HHHcCCHHHHHHHHh--------------------------
Q 039376           86 --QIKQVKTSEDWFREMVETGVKV---DLGEHPQLRR--ALVRKDWKEVERFIS--------------------------  132 (289)
Q Consensus        86 --~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~--A~~~g~~~~v~~ll~--------------------------  132 (289)
                        +......+.+++++|+++|+++   |..|.||||+  |...|+.+++++|++                          
T Consensus       205 l~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (672)
T PHA02730        205 LSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNK  284 (672)
T ss_pred             HhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhh
Confidence              1124667889999999999997   5689999994  556688999999998                          


Q ss_pred             -----hCCCCccc--------------------ccCCCCCh---------------------HHHHHHhcCCchHHHHHH
Q 039376          133 -----ENPDTLYA--------------------KFTESCGT---------------------LFHSMANINEDEAHRLLD  166 (289)
Q Consensus       133 -----~~~~~~~~--------------------~~~~~~~t---------------------~Lh~A~~~g~~~~~~~v~  166 (289)
                           ..+++...                    . +..|.+                     .||...+++.-...++++
T Consensus       285 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIve  363 (672)
T PHA02730        285 RFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSY-DSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILR  363 (672)
T ss_pred             hhhcccCCcchHHHHHHhhccCcchhhhhccccc-cccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHH
Confidence                 02555544                    2 455554                     778777766212289999


Q ss_pred             HHHhccCCCCccccCCCCCCHHHHHHHhCC----HHHHHHHHHcCC--CCCCCCCCCCCCHHHH---HHHcC--------
Q 039376          167 EFLDMISPLDLEETDTSGGTPLTSAAIVGN----TKAAKILVKYNK--NLPNMRNRIGQCPIHC---AARSG--------  229 (289)
Q Consensus       167 ~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~--~i~~~~~~~g~t~L~~---A~~~~--------  229 (289)
                      +|++.  |++++.. ..|.||||+|+..++    .+++++|+++|+  ++ +.++..|+||||.   |...+        
T Consensus       364 lLIs~--GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dI-N~kd~~G~T~Lh~~i~a~~~n~~~~~~e~  439 (672)
T PHA02730        364 CMLDN--GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAI-NHVSNNGRLCMYGLILSRFNNCGYHCYET  439 (672)
T ss_pred             HHHHC--CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccc-cccccCCCchHhHHHHHHhccccccccch
Confidence            99999  9999985 799999999998875    899999999998  55 8899999999984   33232        


Q ss_pred             -CHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376          230 -HRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY  277 (289)
Q Consensus       230 -~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~  277 (289)
                       ..+++++|+.+|++++          .++..|.||||+|+..+..++.
T Consensus       440 ~~~~ivk~LIs~GADIN----------akD~~G~TPLh~Aa~~~~~eiv  478 (672)
T PHA02730        440 ILIDVFDILSKYMDDID----------MIDNENKTLLYYAVDVNNIQFA  478 (672)
T ss_pred             hHHHHHHHHHhcccchh----------ccCCCCCCHHHHHHHhCCHHHH
Confidence             2357999999999999          9999999999999998876643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=160.31  Aligned_cols=133  Identities=20%  Similarity=0.155  Sum_probs=116.8

Q ss_pred             CCCCchHHHHHHHcCCH----HHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-C
Q 039376          108 DLGEHPQLRRALVRKDW----KEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-T  182 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~----~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-~  182 (289)
                      +..+.++||.|++.|+.    +++++|++ .+..++.+ +..|+||||+|+..|+....+++++|++.  |++++.++ .
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~-~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~--Gadin~~d~~   92 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISG-DGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNM--GADINARELG   92 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhh-cchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHc--CCCCCCCCCC
Confidence            55778899999999998    44555555 67788888 89999999999999882223458999999  99999998 5


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      .|.||||+|+..|+.+++++|++ .|+++ +.++..|+||||+|+..++.+++++|+++|++++
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            89999999999999999999995 79995 9999999999999999999999999999999998

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=3.6e-22  Score=157.90  Aligned_cols=144  Identities=17%  Similarity=0.214  Sum_probs=123.0

Q ss_pred             HHHHHHHHcCCcCCCCCchHHHHHHHcCCHHHHHHHHhh-----CCCCcccccCCCCChHHHHHHhcCCc-hHHHHHHHH
Q 039376           95 DWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISE-----NPDTLYAKFTESCGTLFHSMANINED-EAHRLLDEF  168 (289)
Q Consensus        95 ~~~~~Ll~~g~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~-----~~~~~~~~~~~~~~t~Lh~A~~~g~~-~~~~~v~~L  168 (289)
                      .|+..++..   .|..|.||||+|++.|+.++++.|+..     .+++++.+ +..|.||||+|+..|+. ...+++++|
T Consensus         8 ~~~~~~~~~---~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~L   83 (169)
T PHA02741          8 TCLEEMIAE---KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHL   83 (169)
T ss_pred             HHHHHHhhc---cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHH
Confidence            345555443   267899999999999999999988542     25778888 89999999999999981 012788999


Q ss_pred             HhccCCCCccccCC-CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          169 LDMISPLDLEETDT-SGGTPLTSAAIVGNTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       169 l~~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      ++.  |++++.++. .|+||||+|+..++.+++++|++ .|+++ +..|..|+||||+|+..++.+++++|+++++...
T Consensus        84 l~~--gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         84 IEL--GADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             HHc--CCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            998  999999985 89999999999999999999998 58995 9999999999999999999999999999876643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=4.5e-22  Score=192.81  Aligned_cols=152  Identities=13%  Similarity=0.054  Sum_probs=139.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHH
Q 039376          109 LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPL  188 (289)
Q Consensus       109 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L  188 (289)
                      ..+.++||.||..|+.++++.|++ .|++++.. +..|.||||+|+..|+   .+++++|++.  |++++.+|..|+|||
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~-d~~G~TpLh~Aa~~g~---~~~v~~Ll~~--gadin~~d~~G~TpL  595 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLK-AKLDPDIG-DSKGRTPLHIAASKGY---EDCVLVLLKH--ACNVHIRDANGNTAL  595 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCh---HHHHHHHHhc--CCCCCCcCCCCCCHH
Confidence            356799999999999999999998 69999999 9999999999999999   9999999999  999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHH
Q 039376          189 TSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEIL  268 (289)
Q Consensus       189 ~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a  268 (289)
                      |+|+..|+.+++++|++.++.. +  ...|.++||.|+..|+.+++++|+++|++++          ..+.+|.||||+|
T Consensus       596 ~~A~~~g~~~iv~~L~~~~~~~-~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin----------~~d~~G~TpLh~A  662 (823)
T PLN03192        596 WNAISAKHHKIFRILYHFASIS-D--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD----------SEDHQGATALQVA  662 (823)
T ss_pred             HHHHHhCCHHHHHHHHhcCccc-C--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHH
Confidence            9999999999999999887653 3  3567799999999999999999999999999          9999999999999


Q ss_pred             HHhCCCCccccc
Q 039376          269 IEFNFLGQYTCN  280 (289)
Q Consensus       269 ~~~g~~~~~~~~  280 (289)
                      +..|+.++...+
T Consensus       663 ~~~g~~~iv~~L  674 (823)
T PLN03192        663 MAEDHVDMVRLL  674 (823)
T ss_pred             HHCCcHHHHHHH
Confidence            999998854443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.4e-21  Score=183.48  Aligned_cols=175  Identities=13%  Similarity=0.067  Sum_probs=136.6

Q ss_pred             ChhhhhhcccCCCCccchhccccccH---HHhcCCH----HHHHHHHHcCCcCCCCC-chHHHHHHHcCCHHHHHHHHhh
Q 039376           62 KEDEITEMKPANDPIIEVKSHERQQI---KQVKTSE----DWFREMVETGVKVDLGE-HPQLRRALVRKDWKEVERFISE  133 (289)
Q Consensus        62 ~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~Ll~~g~~~~~~g-~t~Lh~A~~~g~~~~v~~ll~~  133 (289)
                      +..+++++++..|++.+.++..+.++   +...+++    ++++.|++.+...+.+. .+++|+|+..|+.++|++|++ 
T Consensus        46 ~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~-  124 (661)
T PHA02917         46 NNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVE-  124 (661)
T ss_pred             CcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHH-
Confidence            44555566666666655555544443   5566664    45678887654333333 367778999999999999998 


Q ss_pred             CCCCcccccCCCCChHHHHHH--hcCCchHHHHHHHHHhccCCCCccccCC---CC-----------CCHHHHHHH----
Q 039376          134 NPDTLYAKFTESCGTLFHSMA--NINEDEAHRLLDEFLDMISPLDLEETDT---SG-----------GTPLTSAAI----  193 (289)
Q Consensus       134 ~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~~~~v~~Ll~~~~g~~~~~~~~---~g-----------~t~L~~A~~----  193 (289)
                      .|++++.+ +..|.||||+|+  ..|+   .+++++|++.  |++++..+.   .|           .||||+|+.    
T Consensus       125 ~Gadin~~-d~~g~T~L~~~~a~~~~~---~eivklLi~~--Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~  198 (661)
T PHA02917        125 HGFDLSVK-CENHRSVIENYVMTDDPV---PEIIDLFIEN--GCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLY  198 (661)
T ss_pred             cCCCCCcc-CCCCccHHHHHHHccCCC---HHHHHHHHHc--CCCccccccccccccccccccccccccHHHHHHhhccc
Confidence            69999999 999999999654  4689   9999999999  999986543   33           599999986    


Q ss_pred             -------hCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHhcCCCcc
Q 039376          194 -------VGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR--ETVEYLLSVTGVEE  245 (289)
Q Consensus       194 -------~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~~~  245 (289)
                             .++.+++++|+++|+++ +.++..|.||||+|+..|+.  +++++|++ |++.+
T Consensus       199 ~~~~~~~~~~~eiv~~Li~~Gadv-n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        199 SESDTRAYVRPEVVKCLINHGIKP-SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             ccccccccCcHHHHHHHHHCCCCc-ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence                   45889999999999996 99999999999999999985  79999975 88765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=6.4e-21  Score=174.07  Aligned_cols=226  Identities=11%  Similarity=0.074  Sum_probs=169.5

Q ss_pred             chhhhhhcCCchHHHHHHHhccCCCchh---------hh-hcCChhhhhhcccCCCCccc--------------------
Q 039376           29 PSSRLLDSKNEDEIVKMKQKDFAQPSSK---------LV-VGKKEDEITEMKPANDPIIE--------------------   78 (289)
Q Consensus        29 ~~~~~~~~~~~~~iv~~L~~~~~~~~~~---------~~-~~~~~~~~~~~l~~~~~~~~--------------------   78 (289)
                      +...+....+..|+|++|+++|++....         .+ ....+.+++++|+..|++..                    
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~  153 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYY  153 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccccc
Confidence            3444455667777777777777554321         12 22456677777776665422                    


Q ss_pred             ----------------hhcccccc---HHHhcC-------CHHHHHHHHHcCCcC---CCCCchHHHHHHHcC--CHHHH
Q 039376           79 ----------------VKSHERQQ---IKQVKT-------SEDWFREMVETGVKV---DLGEHPQLRRALVRK--DWKEV  127 (289)
Q Consensus        79 ----------------~~~~~~~~---~~~~~~-------~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g--~~~~v  127 (289)
                                      ..+..+.+   .++...       +.++++.|+++|+++   |..|.||||+|+.+.  ..+++
T Consensus       154 ~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~  233 (631)
T PHA02792        154 NWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIF  233 (631)
T ss_pred             chhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHH
Confidence                            22222333   244555       699999999999987   668999999999998  77888


Q ss_pred             HHHHhhCC---------------------CCccc----------------------------------------------
Q 039376          128 ERFISENP---------------------DTLYA----------------------------------------------  140 (289)
Q Consensus       128 ~~ll~~~~---------------------~~~~~----------------------------------------------  140 (289)
                      +.|+...-                     .+++.                                              
T Consensus       234 ~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Y  313 (631)
T PHA02792        234 DALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEY  313 (631)
T ss_pred             HHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            87765211                     00100                                              


Q ss_pred             -------------------cc-CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCC--CCHHHHHHHhCCH-
Q 039376          141 -------------------KF-TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSG--GTPLTSAAIVGNT-  197 (289)
Q Consensus       141 -------------------~~-~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g--~t~L~~A~~~g~~-  197 (289)
                                         .. .......++.|+..|+   .+++++|++.  |++++.+|..|  .||||+|+..... 
T Consensus       314 l~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn---~eIVelLIs~--GADIN~kD~~g~~~TpLh~A~~n~~~~  388 (631)
T PHA02792        314 VSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRD---PKVVEYILKN--GNVVVEDDDNIINIMPLFPTLSIHESD  388 (631)
T ss_pred             HhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCC---HHHHHHHHHc--CCchhhhcCCCCChhHHHHHHHhccHh
Confidence                               00 1124566888999999   9999999999  99999998775  6999998776654 


Q ss_pred             --HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376          198 --KAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIE  270 (289)
Q Consensus       198 --~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  270 (289)
                        +++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|++++          .++..|.||+++|+.
T Consensus       389 v~~IlklLIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN----------~kD~~G~TpL~~A~~  452 (631)
T PHA02792        389 VLSILKLCKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN----------ITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHHHHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCCHHHHHHH
Confidence              4689999999996 9999999999999999999999999999999999          999999999999975

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=1.9e-22  Score=157.40  Aligned_cols=165  Identities=17%  Similarity=0.169  Sum_probs=148.5

Q ss_pred             cCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHH
Q 039376           91 KTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDE  167 (289)
Q Consensus        91 ~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~  167 (289)
                      .++....+.++..|+..   +..+++|+.+++..-+++.+..+.+   ..+|.. |..|+|||.+|+..|+   +++|++
T Consensus       106 ~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~-De~GfTpLiWAaa~G~---i~vV~f  178 (296)
T KOG0502|consen  106 CGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNAC-DEFGFTPLIWAAAKGH---IPVVQF  178 (296)
T ss_pred             CCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh---ccccCc-cccCchHhHHHHhcCc---hHHHHH
Confidence            35667777778777754   5588999999999998888765554   356777 9999999999999999   999999


Q ss_pred             HHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccc
Q 039376          168 FLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEED  247 (289)
Q Consensus       168 Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  247 (289)
                      ||+.  |++++...+...++|.+|++.|..++|++|++++.++ |.-|.+|-|||.+|++-||..|++.|+..|+++.  
T Consensus       179 LL~~--GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--  253 (296)
T KOG0502|consen  179 LLNS--GADPDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--  253 (296)
T ss_pred             HHHc--CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--
Confidence            9999  9999999999999999999999999999999999997 9999999999999999999999999999999999  


Q ss_pred             cccCCCCcccccccchHHHHHHHhCCCC
Q 039376          248 SHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       248 ~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                              ..+..|++++..|...|+-.
T Consensus       254 --------~e~dsGy~~mdlAValGyr~  273 (296)
T KOG0502|consen  254 --------QEDDSGYWIMDLAVALGYRI  273 (296)
T ss_pred             --------cccccCCcHHHHHHHhhhHH
Confidence                    99999999999999988743

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=1.6e-22  Score=193.20  Aligned_cols=204  Identities=17%  Similarity=0.122  Sum_probs=155.7

Q ss_pred             hhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcC-CHHHHHH
Q 039376           57 LVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRK-DWKEVER  129 (289)
Q Consensus        57 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g-~~~~v~~  129 (289)
                      .++..+..+.++++...+...+...+.+.+   ++...++..+++.++.+|++.   +..|+||+|.|+..| ..+....
T Consensus       380 la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~  459 (1143)
T KOG4177|consen  380 LAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARL  459 (1143)
T ss_pred             hhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhh
Confidence            344445555566655555554444443333   344555556666666666654   446778888888887 5666665


Q ss_pred             HHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Q 039376          130 FISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       130 ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      +++ .+.+++.. ...|.||||.|+..|+   .++++.+++.  ++..+.....+.+++|.|...+...+++.++++|++
T Consensus       460 l~~-~g~~~n~~-s~~G~T~Lhlaaq~Gh---~~~~~llle~--~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~  532 (1143)
T KOG4177|consen  460 LLQ-YGADPNAV-SKQGFTPLHLAAQEGH---TEVVQLLLEG--GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN  532 (1143)
T ss_pred             Hhh-cCCCcchh-ccccCcchhhhhccCC---chHHHHhhhc--CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCc
Confidence            565 57777777 7788888888888888   8888888877  666777777788888888888888888888888998


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          210 LPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       210 i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      + +.++.+|.||||.|+.+|+..+|++|+++|++++          .+++.|+||||.|+..|+.++..
T Consensus       533 v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~----------ak~~~G~TPLH~Aa~~G~~~i~~  590 (1143)
T KOG4177|consen  533 V-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN----------AKDKLGYTPLHQAAQQGHNDIAE  590 (1143)
T ss_pred             e-ehhcccccchHHHHHhcCCchHHHHhhhCCcccc----------ccCCCCCChhhHHHHcChHHHHH
Confidence            6 9999999999999999999999999999999999          99999999999999999877533

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=1.9e-21  Score=146.44  Aligned_cols=145  Identities=23%  Similarity=0.228  Sum_probs=131.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      -.+.+|+..+.+..|+.||+.....++.+ |..|.||||.|+.+|+   .+||+.|+..  |++.+.+...||||||.||
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h---~div~~ll~~--gAn~~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGH---LDIVHELLLS--GANKEAKTNEGWTPLHSAC  138 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCc---hHHHHHHHHc--cCCcccccccCccchhhhh
Confidence            45679999999999999999877888999 9999999999999999   9999999999  9999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHH-hcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376          193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG-HRETVEYLL-SVTGVEEEDSHEKYSNPFAGECGLKLLEILIE  270 (289)
Q Consensus       193 ~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~-~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  270 (289)
                      ...+++++.+|+.+|+++ ++.....+||||+|+... ....+++|+ ..+..+.          .++..+.|++.+|-.
T Consensus       139 kWnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg----------~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  139 KWNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG----------LKNNLEETAFDIARR  207 (228)
T ss_pred             cccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChh----------hhcCccchHHHHHHH
Confidence            999999999999999997 999999999999999764 456777776 7778888          888899999999877


Q ss_pred             hCCC
Q 039376          271 FNFL  274 (289)
Q Consensus       271 ~g~~  274 (289)
                      -|..
T Consensus       208 T~~s  211 (228)
T KOG0512|consen  208 TSMS  211 (228)
T ss_pred             hhhh
Confidence            6644

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=151.84  Aligned_cols=134  Identities=16%  Similarity=0.155  Sum_probs=110.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhh----CCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-C
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISE----NPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-T  182 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~----~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-~  182 (289)
                      |..|.||||+|++.|+...+..+...    .+..+..+ +..|.||||+|+..|+.+..+++++|++.  |++++.++ .
T Consensus        14 d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~--gadin~~~~~   90 (154)
T PHA02736         14 DIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEW--GADINGKERV   90 (154)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHc--CCCccccCCC
Confidence            67899999999999984322111110    01112334 78899999999999982223578999999  99999998 5


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVKY-NKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      .|+||||+|+..|+.+++++|++. |+++ +.++..|+||||+|+..|+.+++++|+++|++.+
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            899999999999999999999984 8895 9999999999999999999999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=6.6e-22  Score=154.42  Aligned_cols=150  Identities=16%  Similarity=0.133  Sum_probs=136.0

Q ss_pred             HHHhcCCHHHHHHHHHcCCc-CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHH
Q 039376           87 IKQVKTSEDWFREMVETGVK-VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLL  165 (289)
Q Consensus        87 ~~~~~~~~~~~~~Ll~~g~~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v  165 (289)
                      +++.+.+++....+.+...+ .|..|+|||.||+++|++.+|++||+ .|+++... .+...++|.+|++.|.   .++|
T Consensus       135 lsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~-~GAdp~~l-gk~resALsLAt~ggy---tdiV  209 (296)
T KOG0502|consen  135 LSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLN-SGADPDAL-GKYRESALSLATRGGY---TDIV  209 (296)
T ss_pred             HHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHH-cCCChhhh-hhhhhhhHhHHhcCCh---HHHH
Confidence            45566677777776666554 38899999999999999999999999 69999988 8899999999999999   9999


Q ss_pred             HHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          166 DEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       166 ~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      ++||..  +.++|..|.+|.|||.||++.++.++++.|+..|++. +..+..|.+++..|++.|+- +++..++.-+...
T Consensus       210 ~lLL~r--~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~-t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  210 ELLLTR--EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV-TQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKL  285 (296)
T ss_pred             HHHHhc--CCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCc-ccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence            999999  8999999999999999999999999999999999995 99999999999999999988 8888888777766

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=3.3e-20  Score=146.69  Aligned_cols=120  Identities=18%  Similarity=0.233  Sum_probs=108.3

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhcc----CCCCccccCCCCCCHHHHHHHhCC----HHHHHHHHHcCCCCCCCC
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMI----SPLDLEETDTSGGTPLTSAAIVGN----TKAAKILVKYNKNLPNMR  214 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~----~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~i~~~~  214 (289)
                      +..|.||||+|++.|+   .+++++|+...    .|++++.+|..|.||||+|+..|+    .+++++|+++|+++ +.+
T Consensus        18 ~~~g~t~Lh~Aa~~g~---~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~   93 (169)
T PHA02741         18 NSEGENFFHEAARCGC---FDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQ   93 (169)
T ss_pred             ccCCCCHHHHHHHcCC---HHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCC
Confidence            7889999999999999   99999885421    157899999999999999999998    58999999999996 888


Q ss_pred             CC-CCCCHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          215 NR-IGQCPIHCAARSGHRETVEYLLS-VTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       215 ~~-~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                      +. .|+||||+|+..++.+++++|+. .|++++          ..+..|+|||++|+..|..++
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~----------~~n~~g~tpL~~A~~~~~~~i  147 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH----------FCNADNKSPFELAIDNEDVAM  147 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----------cCCCCCCCHHHHHHHCCCHHH
Confidence            85 89999999999999999999997 699999          999999999999999998664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.5e-19  Score=152.11  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=109.5

Q ss_pred             CCCCc-hHHHHHHHcCCHHHHHHHHhhCCCCccccc---CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcccc-CC
Q 039376          108 DLGEH-PQLRRALVRKDWKEVERFISENPDTLYAKF---TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEET-DT  182 (289)
Q Consensus       108 ~~~g~-t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~---~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~-~~  182 (289)
                      |..|. ++||.|++.|+.+++++|++ .|++++.+.   +..|.||||+|+..++   .+++++|++.  |++++.+ +.
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~~~sd~~g~TpLh~Aa~~~~---~eivklLL~~--GADVN~~~~~  102 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILK-LGADPEAPFPLSENSKTNPLIYAIDCDN---DDAAKLLIRY--GADVNRYAEE  102 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHH-CCCCccccCcccCCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCcCcccCC
Confidence            44554 56777888899999999998 689998761   3589999999999999   9999999999  9999986 46


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .|.||||+|+..|+.+++++|++.|+++ +.++..|+||||+|+..++..++..+...+
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~~  160 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDNE  160 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCCc
Confidence            7999999999999999999999999995 999999999999999988888886665443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=3e-20  Score=162.28  Aligned_cols=164  Identities=21%  Similarity=0.239  Sum_probs=110.8

Q ss_pred             hcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHH------------
Q 039376           90 VKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMA------------  154 (289)
Q Consensus        90 ~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~------------  154 (289)
                      +..+.+|+++|++.|+++   |..|+||||.|+..|+..++++++. .++++... +..|..|+..+.            
T Consensus        82 id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~-~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~  159 (527)
T KOG0505|consen   82 IDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQ-HGANLLAV-NSDGNMPYDLAEDEATLDVLETEM  159 (527)
T ss_pred             hcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHH-hhhhhhhc-cCCCCCccccccCcchhHHHHHHH
Confidence            445556666666666655   3456666666666666666666655 35544443 333333332211            


Q ss_pred             -hcCCc----------hHH-HHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          155 -NINED----------EAH-RLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       155 -~~g~~----------~~~-~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                       ..|-+          ..+ ++-+|+ ..  |...+..+..|.|.||.|+..|..++..+|++.|.+. +.+|.+|||||
T Consensus       160 ~r~gi~iea~R~~~e~~ml~D~~q~l-~~--G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPl  235 (527)
T KOG0505|consen  160 ARQGIDIEAARKAEEQTMLDDARQWL-NA--GAELDARHARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPL  235 (527)
T ss_pred             HHhcccHHHHhhhhHHHHHHHHHHHH-hc--cccccccccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcc
Confidence             01100          000 111222 23  5556666667999999999999999999999999995 99999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHH
Q 039376          223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILI  269 (289)
Q Consensus       223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~  269 (289)
                      |.|+.+|+.+++++|+++|++.+          .....|.+|+.+|-
T Consensus       236 HAAA~Wg~~~~~elL~~~ga~~d----------~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  236 HAAAHWGQEDACELLVEHGADMD----------AKTKMGETPLDVAD  272 (527)
T ss_pred             cHHHHhhhHhHHHHHHHhhcccc----------hhhhcCCCCccchh
Confidence            99999999999999999999999          66666777666554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=1e-19  Score=175.18  Aligned_cols=213  Identities=10%  Similarity=0.054  Sum_probs=154.2

Q ss_pred             hhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhcc---cccc-HHHhcCCHHHHHHHHHcCCcC
Q 039376           32 RLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSH---ERQQ-IKQVKTSEDWFREMVETGVKV  107 (289)
Q Consensus        32 ~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~Ll~~g~~~  107 (289)
                      ..+...|..+.|+.+++...                      +.+++..+.   ...+ .|...++.++++.|+++|+ .
T Consensus        22 l~A~~~g~~~~v~~lL~~~~----------------------~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-~   78 (743)
T TIGR00870        22 LPAAERGDLASVYRDLEEPK----------------------KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-R   78 (743)
T ss_pred             HHHHHcCCHHHHHHHhcccc----------------------ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-C
Confidence            34557788888888877632                      011111122   2234 5667788899999999987 5


Q ss_pred             CCCCchHHHHHHHcCC---HHHHHHHHhhCCCC------ccc---ccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCC
Q 039376          108 DLGEHPQLRRALVRKD---WKEVERFISENPDT------LYA---KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPL  175 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~---~~~v~~ll~~~~~~------~~~---~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~  175 (289)
                      +..|.||||.|+..+.   ..++..+... +..      .+.   .....|.||||+|+..|+   .++|++|++.  |+
T Consensus        79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~---~eiVklLL~~--GA  152 (743)
T TIGR00870        79 GAVGDTLLHAISLEYVDAVEAILLHLLAA-FRKSGPLELANDQYTSEFTPGITALHLAAHRQN---YEIVKLLLER--GA  152 (743)
T ss_pred             CCcChHHHHHHHhccHHHHHHHHHHHhhc-ccccCchhhhccccccccCCCCcHHHHHHHhCC---HHHHHHHHhC--CC
Confidence            6789999999997322   2233333332 211      111   113469999999999999   9999999999  99


Q ss_pred             CccccC--------------CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC---------CHH
Q 039376          176 DLEETD--------------TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG---------HRE  232 (289)
Q Consensus       176 ~~~~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~---------~~~  232 (289)
                      +++.++              ..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..+         ...
T Consensus       153 dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~  231 (743)
T TIGR00870       153 SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQ  231 (743)
T ss_pred             CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHH
Confidence            998653              25899999999999999999999999995 999999999999999886         345


Q ss_pred             HHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376          233 TVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY  277 (289)
Q Consensus       233 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~  277 (289)
                      +.+++++.++.....   .....+.+.+|.|||++|+..|+.++.
T Consensus       232 ~~~~l~~ll~~~~~~---~el~~i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       232 MYNFALSLLDKLRDS---KELEVILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             HHHHHHHHHhccCCh---HhhhhhcCCCCCCchhhhhhcCCccHH
Confidence            667777776665300   000026788999999999999988753

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=5.8e-20  Score=144.71  Aligned_cols=129  Identities=14%  Similarity=0.032  Sum_probs=111.7

Q ss_pred             CCCcccccCCCCChHHHHHHhcCCchHH----HHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHH---HHHHHHHcC
Q 039376          135 PDTLYAKFTESCGTLFHSMANINEDEAH----RLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTK---AAKILVKYN  207 (289)
Q Consensus       135 ~~~~~~~~~~~~~t~Lh~A~~~g~~~~~----~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~g  207 (289)
                      +++++.. +..+.++||.||+.|+   .    +++++|++.  +..++.+|..|+||||+|+..|+.+   ++++|++.|
T Consensus        10 ~~~~~~~-~~~~~~~l~~a~~~g~---~~~l~~~~~~l~~~--g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G   83 (166)
T PHA02743         10 NLGAVEI-DEDEQNTFLRICRTGN---IYELMEVAPFISGD--GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMG   83 (166)
T ss_pred             chHHhhh-ccCCCcHHHHHHHcCC---HHHHHHHHHHHhhc--chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC
Confidence            4555555 6778899999999999   7    566677777  8889999999999999999998765   489999999


Q ss_pred             CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          208 KNLPNMRN-RIGQCPIHCAARSGHRETVEYLLS-VTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       208 ~~i~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      +++ +.++ ..|+||||+|+..++.+++++|+. .|++++          ..+..|.||||+|+..|..++...+
T Consensus        84 adi-n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~----------~~d~~g~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743         84 ADI-NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG----------AINYQHETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             CCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc----------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            996 8888 589999999999999999999994 899999          9999999999999999987754433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=2.5e-19  Score=172.51  Aligned_cols=167  Identities=20%  Similarity=0.147  Sum_probs=135.7

Q ss_pred             HHHhcCCHHHHHHHHHc--CCcCC---CCCchHHH-HHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCch
Q 039376           87 IKQVKTSEDWFREMVET--GVKVD---LGEHPQLR-RALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDE  160 (289)
Q Consensus        87 ~~~~~~~~~~~~~Ll~~--g~~~~---~~g~t~Lh-~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (289)
                      .|+..++.+.++.++++  +.++|   ..|.|||| .|+..++.++++.|+. .++    . +..|.||||.|+..+.+.
T Consensus        23 ~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~-~g~----~-~~~G~T~Lh~A~~~~~~~   96 (743)
T TIGR00870        23 PAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLN-LSC----R-GAVGDTLLHAISLEYVDA   96 (743)
T ss_pred             HHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHh-CCC----C-CCcChHHHHHHHhccHHH
Confidence            48889999999999998  66664   68999999 8889999999998887 454    4 778999999999843311


Q ss_pred             HHHHHHHHHhccCCCC------c----cccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC--------------C
Q 039376          161 AHRLLDEFLDMISPLD------L----EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN--------------R  216 (289)
Q Consensus       161 ~~~~v~~Ll~~~~g~~------~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~--------------~  216 (289)
                      ...++.++...  +..      .    ......|.||||+|+..|+.+++++|+++|+++ +.++              .
T Consensus        97 v~~ll~~l~~~--~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~  173 (743)
T TIGR00870        97 VEAILLHLLAA--FRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFY  173 (743)
T ss_pred             HHHHHHHHhhc--ccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCccc
Confidence            13344555543  211      1    112346999999999999999999999999996 6543              3


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          217 IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                      .|+||||.|+..|+.+++++|+++|++++          .++..|.||||+|+..+
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin----------~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSEDPADIL----------TADSLGNTLLHLLVMEN  219 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhcCCcchh----------hHhhhhhHHHHHHHhhh
Confidence            58999999999999999999999999999          99999999999999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=8.3e-19  Score=148.98  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             CCCCC-hHHHHHHhcCCchHHHHHHHHHhccCCCCccccC----CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CC
Q 039376          143 TESCG-TLFHSMANINEDEAHRLLDEFLDMISPLDLEETD----TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMR-NR  216 (289)
Q Consensus       143 ~~~~~-t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~-~~  216 (289)
                      +..+. ++||.|+..|+   .+++++|++.  |++++.++    ..|.||||+|+..++.+++++|+++|+++ +.. +.
T Consensus        29 d~~~~~~lL~~A~~~~~---~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~  102 (300)
T PHA02884         29 NKICIANILYSSIKFHY---TDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEE  102 (300)
T ss_pred             CcCCCCHHHHHHHHcCC---HHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCC
Confidence            55555 55677888899   9999999999  99999874    58999999999999999999999999996 875 46


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          217 IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                      .|.||||+|+..++.+++++|+.+|++++          .++..|.||+++|+..+...
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAdin----------~kd~~G~TpL~~A~~~~~~~  151 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGADIN----------IQTNDMVTPIELALMICNNF  151 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHHhCChh
Confidence            89999999999999999999999999999          99999999999999876544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=1.2e-18  Score=145.56  Aligned_cols=146  Identities=21%  Similarity=0.259  Sum_probs=126.9

Q ss_pred             HHHhcCCHHHHHHHHHcCC-cC---CCCCchHHHHHHHc-----CCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC
Q 039376           87 IKQVKTSEDWFREMVETGV-KV---DLGEHPQLRRALVR-----KDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN  157 (289)
Q Consensus        87 ~~~~~~~~~~~~~Ll~~g~-~~---~~~g~t~Lh~A~~~-----g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g  157 (289)
                      .++...+.++++.|+..|. ++   |.-|+||+++|+..     .+..+|..|+.-  .++|.+...-|+|+|++|+..|
T Consensus       274 YsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gnVNaKAsQ~gQTALMLAVSHG  351 (452)
T KOG0514|consen  274 YAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM--GDVNAKASQHGQTALMLAVSHG  351 (452)
T ss_pred             eeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc--cCcchhhhhhcchhhhhhhhcC
Confidence            3555567789999999884 55   67899999998754     467888888873  4677775677999999999999


Q ss_pred             CchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 039376          158 EDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKNLPNMRNRIGQCPIHCAARSGHRETVEY  236 (289)
Q Consensus       158 ~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~  236 (289)
                      +   .++|+.||..  |+++|.+|.+|-|+|+.||++|+.|++++|+.. ++++ ..+|.+|.|+|.+|...||.+|.-+
T Consensus       352 r---~d~vk~LLac--gAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~-sLtD~DgSTAl~IAleagh~eIa~m  425 (452)
T KOG0514|consen  352 R---VDMVKALLAC--GADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDI-SLTDVDGSTALSIALEAGHREIAVM  425 (452)
T ss_pred             c---HHHHHHHHHc--cCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccc-eeecCCCchhhhhHHhcCchHHHHH
Confidence            9   9999999999  999999999999999999999999999999986 5665 8999999999999999999999887


Q ss_pred             HHhc
Q 039376          237 LLSV  240 (289)
Q Consensus       237 Ll~~  240 (289)
                      |-.+
T Consensus       426 lYa~  429 (452)
T KOG0514|consen  426 LYAH  429 (452)
T ss_pred             HHHH
Confidence            7654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.79  E-value=2e-18  Score=156.13  Aligned_cols=203  Identities=15%  Similarity=0.142  Sum_probs=165.6

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC--
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV--  107 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~--  107 (289)
                      .+.-+.-.|+.+++++|++..+-....+                     .+.....+++...++.+.++.++.++..+  
T Consensus        52 alhha~Lng~~~is~llle~ea~ldl~d---------------------~kg~~plhlaaw~g~~e~vkmll~q~d~~na  110 (854)
T KOG0507|consen   52 LLHHAVLNGQNQISKLLLDYEALLDLCD---------------------TKGILPLHLAAWNGNLEIVKMLLLQTDILNA  110 (854)
T ss_pred             HHHHHHhcCchHHHHHHhcchhhhhhhh---------------------ccCcceEEehhhcCcchHHHHHHhcccCCCc
Confidence            3444555666677777666553322222                     12233345688899999999999998544  


Q ss_pred             -CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCC--------cc
Q 039376          108 -DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLD--------LE  178 (289)
Q Consensus       108 -~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~--------~~  178 (289)
                       +..|.||||.|+++|+.+++.+|+. .++++-.+ +..+.|+|..|+++|+   .++++.|+..  ..+        -.
T Consensus       111 ~~~e~~tplhlaaqhgh~dvv~~Ll~-~~adp~i~-nns~~t~ldlA~qfgr---~~Vvq~ll~~--~~~~~~~~~~~~~  183 (854)
T KOG0507|consen  111 VNIENETPLHLAAQHGHLEVVFYLLK-KNADPFIR-NNSKETVLDLASRFGR---AEVVQMLLQK--KFPVQSSLRVGDI  183 (854)
T ss_pred             ccccCcCccchhhhhcchHHHHHHHh-cCCCcccc-CcccccHHHHHHHhhh---hHHHHHHhhh--ccchhhcccCCCC
Confidence             5689999999999999999999999 68999999 9999999999999999   9999999976  222        12


Q ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccc
Q 039376          179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAG  258 (289)
Q Consensus       179 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  258 (289)
                      .++-.+.+|||.|+..|+.++++.|++.|.++ |.....| |+||.|+..|..+++++|++.|.+..          +++
T Consensus       184 ~~~~~~~~plHlaakngh~~~~~~ll~ag~di-n~~t~~g-talheaalcgk~evvr~ll~~gin~h----------~~n  251 (854)
T KOG0507|consen  184 KRPFPAIYPLHLAAKNGHVECMQALLEAGFDI-NYTTEDG-TALHEAALCGKAEVVRFLLEIGINTH----------IKN  251 (854)
T ss_pred             CCCCCCcCCcchhhhcchHHHHHHHHhcCCCc-ccccccc-hhhhhHhhcCcchhhhHHHhhccccc----------ccc
Confidence            23446778999999999999999999999997 8877766 99999999999999999999999999          999


Q ss_pred             cccchHHHHHHHhC
Q 039376          259 ECGLKLLEILIEFN  272 (289)
Q Consensus       259 ~~g~~~l~~a~~~g  272 (289)
                      .+|.|+|++.....
T Consensus       252 ~~~qtaldil~d~~  265 (854)
T KOG0507|consen  252 QHGQTALDIIIDLQ  265 (854)
T ss_pred             ccchHHHHHHHhcc
Confidence            99999999887654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=6.5e-19  Score=143.12  Aligned_cols=130  Identities=19%  Similarity=0.194  Sum_probs=115.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |..|++||||||+.|+..+++.||. .|+.++.. +....||||+|+..|+   .++|+.|++.  .+++|..++.|.||
T Consensus        31 ddhgfsplhwaakegh~aivemll~-rgarvn~t-nmgddtplhlaaahgh---rdivqkll~~--kadvnavnehgntp  103 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNST-NMGDDTPLHLAAAHGH---RDIVQKLLSR--KADVNAVNEHGNTP  103 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHh-cccccccc-cCCCCcchhhhhhccc---HHHHHHHHHH--hcccchhhccCCCc
Confidence            6689999999999999999999999 58999888 7778999999999999   9999999999  79999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      |||||..|+-.+++-|+..|+.+ +..+++|.|||..|...-...+.+.--++|-+++
T Consensus       104 lhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999996 9999999999998855433334444446777766

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.78  E-value=1e-18  Score=157.91  Aligned_cols=174  Identities=18%  Similarity=0.110  Sum_probs=153.7

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.++..++.++.+.|++..+-+   +..|.+|||+|++.|+.++++.++. ++..++.. +-.|.||||.|++.|+   
T Consensus        53 lhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~-q~d~~na~-~~e~~tplhlaaqhgh---  127 (854)
T KOG0507|consen   53 LHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLL-QTDILNAV-NIENETPLHLAAQHGH---  127 (854)
T ss_pred             HHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHh-cccCCCcc-cccCcCccchhhhhcc---
Confidence            44588999999999999987643   6799999999999999999999888 57888888 8999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-------CCCCCCCCCHHHHHHHcCCHHHH
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLP-------NMRNRIGQCPIHCAARSGHRETV  234 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-------~~~~~~g~t~L~~A~~~~~~~~~  234 (289)
                      .+++.+|+.+  ++++-.+++.+.|+|..|++.|..++++.|+....+..       ..++..+-+|+|.|+++||.+|+
T Consensus       128 ~dvv~~Ll~~--~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~  205 (854)
T KOG0507|consen  128 LEVVFYLLKK--NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECM  205 (854)
T ss_pred             hHHHHHHHhc--CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHH
Confidence            9999999999  99999999999999999999999999999987632210       24556678899999999999999


Q ss_pred             HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          235 EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       235 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                      +.|+++|.+++          .....| |+||-|+.+|..++
T Consensus       206 ~~ll~ag~din----------~~t~~g-talheaalcgk~ev  236 (854)
T KOG0507|consen  206 QALLEAGFDIN----------YTTEDG-TALHEAALCGKAEV  236 (854)
T ss_pred             HHHHhcCCCcc----------cccccc-hhhhhHhhcCcchh
Confidence            99999999999          877776 88999999988774

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.3e-19  Score=147.10  Aligned_cols=134  Identities=19%  Similarity=0.226  Sum_probs=118.7

Q ss_pred             HHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCC
Q 039376          117 RALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGN  196 (289)
Q Consensus       117 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~  196 (289)
                      .-|+.|+.--|+.-|....-+.+.. |..|++|||+||..|+   ..+++.|+..  |+.+|..+....||||+|+.+|+
T Consensus         6 ~wcregna~qvrlwld~tehdln~g-ddhgfsplhwaakegh---~aivemll~r--garvn~tnmgddtplhlaaahgh   79 (448)
T KOG0195|consen    6 GWCREGNAFQVRLWLDDTEHDLNVG-DDHGFSPLHWAAKEGH---VAIVEMLLSR--GARVNSTNMGDDTPLHLAAAHGH   79 (448)
T ss_pred             hhhhcCCeEEEEEEecCcccccccc-cccCcchhhhhhhccc---HHHHHHHHhc--ccccccccCCCCcchhhhhhccc
Confidence            3455666555555555556677777 8999999999999999   9999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376          197 TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI  267 (289)
Q Consensus       197 ~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~  267 (289)
                      -++|+.|+++.+++ |..+..|.||||+||..|+-++++-|+.+|+.++          +.+++|.||+..
T Consensus        80 rdivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~----------icnk~g~tpldk  139 (448)
T KOG0195|consen   80 RDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN----------ICNKKGMTPLDK  139 (448)
T ss_pred             HHHHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceee----------ecccCCCCchhh
Confidence            99999999999996 9999999999999999999999999999999999          777778777754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.78  E-value=5e-18  Score=155.28  Aligned_cols=149  Identities=15%  Similarity=0.145  Sum_probs=128.5

Q ss_pred             CCHHHHHHHHHcCCcCC-CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCC--ChHHHHHHhcCCchHHHHHHHH
Q 039376           92 TSEDWFREMVETGVKVD-LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESC--GTLFHSMANINEDEAHRLLDEF  168 (289)
Q Consensus        92 ~~~~~~~~Ll~~g~~~~-~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~--~t~Lh~A~~~g~~~~~~~v~~L  168 (289)
                      -+++++++|+++|++.+ .....+++.|+..|+.+++++|++ +|++++.+ +..|  .||||+|+........+++++|
T Consensus       319 v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs-~GADIN~k-D~~g~~~TpLh~A~~n~~~~v~~IlklL  396 (631)
T PHA02792        319 VYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILK-NGNVVVED-DDNIINIMPLFPTLSIHESDVLSILKLC  396 (631)
T ss_pred             ccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHH-cCCchhhh-cCCCCChhHHHHHHHhccHhHHHHHHHH
Confidence            35689999999999874 346678999999999999999999 69999988 7664  6999998877662223468899


Q ss_pred             HhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH--c--------CCHHHHHHHH
Q 039376          169 LDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAAR--S--------GHRETVEYLL  238 (289)
Q Consensus       169 l~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~--~--------~~~~~~~~Ll  238 (289)
                      ++.  |++++.+|..|+||||+|+..++.+++++|+++|+++ +.++..|+|||++|+.  .        ...+++++|+
T Consensus       397 Is~--GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI-N~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLL  473 (631)
T PHA02792        397 KPY--IDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI-NITTKYGSTCIGICVILAHACIPEIAELYIKILEIIL  473 (631)
T ss_pred             Hhc--CCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999  9999999999999999999999999999999999996 9999999999999975  2        2367799999


Q ss_pred             hcCCCcc
Q 039376          239 SVTGVEE  245 (289)
Q Consensus       239 ~~g~~~~  245 (289)
                      ++|++++
T Consensus       474 s~~p~i~  480 (631)
T PHA02792        474 SKLPTIE  480 (631)
T ss_pred             hcCCChh
Confidence            9999876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=4.9e-18  Score=128.17  Aligned_cols=135  Identities=20%  Similarity=0.199  Sum_probs=118.7

Q ss_pred             HHhcCCHHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           88 KQVKTSEDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        88 ~~~~~~~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      ++..+.+..++.|++..++.    |..|+||||-|+..|+.++|+.|+. .+++++.+ ...|+||||-||.-.+   .+
T Consensus        70 aae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~-T~~GWTPLhSAckWnN---~~  144 (228)
T KOG0512|consen   70 AAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAK-TNEGWTPLHSACKWNN---FE  144 (228)
T ss_pred             HHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccc-cccCccchhhhhcccc---hh
Confidence            77888899999999988753    6799999999999999999999998 69999999 9999999999999999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHH-HHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCC
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTK-AAKILVKY-NKNLPNMRNRIGQCPIHCAARSGH  230 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~-~v~~Ll~~-g~~i~~~~~~~g~t~L~~A~~~~~  230 (289)
                      ++.+||.+  |+++++......||||+|+...+.. .+.+|+.. +.. |...+..+.||+.+|-+.+-
T Consensus       145 va~~LLqh--gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~-pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  145 VAGRLLQH--GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH-PGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHHhc--cCcccccccccchhhHHhhcccchHHHHHHHhhccccC-hhhhcCccchHHHHHHHhhh
Confidence            99999999  9999999999999999999887654 55666544 444 67888999999999987653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=4.5e-18  Score=119.83  Aligned_cols=86  Identities=28%  Similarity=0.386  Sum_probs=60.7

Q ss_pred             HHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Q 039376          150 FHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG  229 (289)
Q Consensus       150 Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~  229 (289)
                      ||+|++.|+   .+++++|++.  +.+++.    |.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+.+|
T Consensus         1 L~~A~~~~~---~~~~~~ll~~--~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGN---LEILKFLLEK--GADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTT---HHHHHHHHHT--TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCC---HHHHHHHHHC--cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcC
Confidence            567777777   7777777776  565554    667777777777777777777777774 777777777777777777


Q ss_pred             CHHHHHHHHhcCCCcc
Q 039376          230 HRETVEYLLSVTGVEE  245 (289)
Q Consensus       230 ~~~~~~~Ll~~g~~~~  245 (289)
                      +.+++++|+++|++++
T Consensus        71 ~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   71 NLEIVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHHHHTTT-TT
T ss_pred             CHHHHHHHHHcCCCCC
Confidence            7777777777777766

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=1.3e-18  Score=135.60  Aligned_cols=123  Identities=14%  Similarity=0.103  Sum_probs=100.1

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhcc---CCCCccccCCCCCCHHHHHHHhCCH---HHHHHHHHcCCCCCCCCC-
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMI---SPLDLEETDTSGGTPLTSAAIVGNT---KAAKILVKYNKNLPNMRN-  215 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~---~g~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~i~~~~~-  215 (289)
                      +..|.||||+|++.|+   ...+..+....   .+..+..+|..|.||||+|+..|+.   +++++|++.|+++ +.++ 
T Consensus        14 d~~g~tpLh~A~~~g~---~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~   89 (154)
T PHA02736         14 DIEGENILHYLCRNGG---VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKER   89 (154)
T ss_pred             CCCCCCHHHHHHHhCC---HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCC
Confidence            7889999999999998   64322222110   0112345688999999999999986   4689999999996 8887 


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          216 RIGQCPIHCAARSGHRETVEYLLS-VTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       216 ~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      ..|+||||+|+..++.+++++|+. .|++++          ..+..|.|||++|+..|..++...
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n----------~~~~~g~tpL~~A~~~~~~~i~~~  144 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNME----------ILNYAFKTPYYVACERHDAKMMNI  144 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc----------cccCCCCCHHHHHHHcCCHHHHHH
Confidence            589999999999999999999997 599999          999999999999999998775443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=3.7e-17  Score=121.77  Aligned_cols=123  Identities=30%  Similarity=0.414  Sum_probs=114.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |..|.||||+|++.|+.+++++|++ .+...+.. +..|.+|+|+|+..+.   .+++++|+..  ++.++..+..|.||
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~-~~~g~~~l~~a~~~~~---~~~~~~ll~~--~~~~~~~~~~~~~~   76 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAK-DNDGRTPLHLAAKNGH---LEIVKLLLEK--GADVNARDKDGNTP   76 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCccccCCCCCCH
Confidence            5679999999999999999999998 56766677 8899999999999999   9999999999  88888889999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL  238 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  238 (289)
                      +|+|+..++.+++++|++.+.++ +..+..|.||+++|...++.+++++|+
T Consensus        77 l~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999885 889999999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=2.6e-17  Score=115.90  Aligned_cols=89  Identities=22%  Similarity=0.306  Sum_probs=78.9

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHh
Q 039376          115 LRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIV  194 (289)
Q Consensus       115 Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~  194 (289)
                      ||+|++.|+.+++++|++ .+.+++.     |.||||+|+..|+   .+++++|++.  |++++.++..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----~~~~l~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL-----GNTALHYAAENGN---LEIVKLLLEN--GADINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS-----SSBHHHHHHHTTT---HHHHHHHHHT--TTCTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC-----CCCHHHHHHHcCC---HHHHHHHHHh--cccccccCCCCCCHHHHHHHc
Confidence            799999999999999999 4655432     8899999999999   9999999999  999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCC
Q 039376          195 GNTKAAKILVKYNKNLPNMRN  215 (289)
Q Consensus       195 g~~~~v~~Ll~~g~~i~~~~~  215 (289)
                      |+.+++++|+++|+++ +.+|
T Consensus        70 ~~~~~~~~Ll~~g~~~-~~~n   89 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADV-NIRN   89 (89)
T ss_dssp             THHHHHHHHHHTTT-T-TSS-
T ss_pred             CCHHHHHHHHHcCCCC-CCcC
Confidence            9999999999999995 7654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=1.1e-17  Score=146.33  Aligned_cols=175  Identities=15%  Similarity=0.189  Sum_probs=147.1

Q ss_pred             HHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHH
Q 039376           88 KQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRL  164 (289)
Q Consensus        88 ~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~  164 (289)
                      +...+..+-++.|+..|+.+   |.+|.|+||-++.-.+.+||+++++ .+++++.. +..++||+|.|+..|+   ..+
T Consensus        47 A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~-d~e~wtPlhaaascg~---~~i  121 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVE-NGANVNAQ-DNEGWTPLHAAASCGY---LNI  121 (527)
T ss_pred             ccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHH-hcCCcccc-ccccCCcchhhccccc---HHH
Confidence            44677889999999999876   5689999999999999999999999 69999999 9999999999999999   999


Q ss_pred             HHHHHhccCCCCccccCCCCCCHHHHHHHh-------------C-CHH------------HHHHHHHcCCCCCCCCCCCC
Q 039376          165 LDEFLDMISPLDLEETDTSGGTPLTSAAIV-------------G-NTK------------AAKILVKYNKNLPNMRNRIG  218 (289)
Q Consensus       165 v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~-------------g-~~~------------~v~~Ll~~g~~i~~~~~~~g  218 (289)
                      +.+|+..  |+++...+..|..|+..+...             | ..+            -++..+..|.. ....+..|
T Consensus       122 ~~~li~~--gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG  198 (527)
T KOG0505|consen  122 VEYLIQH--GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE-LDARHARG  198 (527)
T ss_pred             HHHHHHh--hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc-cccccccc
Confidence            9999999  999888887777766544321             1 111            13333446666 47788889


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          219 QCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       219 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      .|.||+|+..|..++.++|+++|.+++          ++|.+||+|||.|+.-|..+.-.|+
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~----------~~D~dgWtPlHAAA~Wg~~~~~elL  250 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYSVN----------IKDYDGWTPLHAAAHWGQEDACELL  250 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccCcc----------cccccCCCcccHHHHhhhHhHHHHH
Confidence            999999999999999999999999999          9999999999999988888744433

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=5.9e-16  Score=115.24  Aligned_cols=117  Identities=26%  Similarity=0.354  Sum_probs=109.0

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                      +..|.||||+|+..++   .+++++|++.  +.+.+..+..|.+|+|+|+..+..+++++|++.++.+ +..+..|.||+
T Consensus         4 ~~~g~t~l~~a~~~~~---~~~i~~li~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l   77 (126)
T cd00204           4 DEDGRTPLHLAASNGH---LEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPL   77 (126)
T ss_pred             CcCCCCHHHHHHHcCc---HHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence            5679999999999999   9999999999  7887889999999999999999999999999999885 88889999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                      |+|+..++.+++++|+++|.+.+          ..+..+.+|+++|+..+..+
T Consensus        78 ~~a~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~  120 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHGADVN----------ARDKDGRTPLHLAAKNGHLE  120 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHhcCCHH
Confidence            99999999999999999998888          88889999999999886655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.66  E-value=5.6e-16  Score=104.88  Aligned_cols=102  Identities=19%  Similarity=0.253  Sum_probs=74.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      -.+.|+++.|..+-|+..+.+ +.+++..  ..|++|||||+.+|+   .++++||+..  |++++.+|+.|.|||..|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~--~ggR~plhyAAD~GQ---l~ilefli~i--GA~i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEI--YGGRTPLHYAADYGQ---LSILEFLISI--GANIQDKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHH--hCCcccchHhhhcch---HHHHHHHHHh--ccccCCccccCCcHHHHHH
Confidence            356677777777777777763 5566544  367777777777777   7777777777  7777777777777777777


Q ss_pred             HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Q 039376          193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIH  223 (289)
Q Consensus       193 ~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~  223 (289)
                      +-|+.++|++|++.|++- ..+..+|.+.+.
T Consensus        76 wEGH~~cVklLL~~GAdr-t~~~PdG~~~~e  105 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADR-TIHAPDGTALIE  105 (117)
T ss_pred             HHhhHHHHHHHHHcCccc-ceeCCCchhHHh
Confidence            777777777777777774 666666666554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=1.4e-15  Score=102.92  Aligned_cols=90  Identities=23%  Similarity=0.305  Sum_probs=81.4

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Q 039376          149 LFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS  228 (289)
Q Consensus       149 ~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~  228 (289)
                      -+.+++.+|.   ++-|+-.+..  |.+++..- .|++|||+|+..|+.++++||+..|+++ +.+|+.|-|||..|++.
T Consensus         5 ~~~W~vkNG~---~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    5 SVAWNVKNGE---IDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hHhhhhccCc---HHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHH
Confidence            3678889999   9988888887  78887665 8899999999999999999999999997 99999999999999999


Q ss_pred             CCHHHHHHHHhcCCCcc
Q 039376          229 GHRETVEYLLSVTGVEE  245 (289)
Q Consensus       229 ~~~~~~~~Ll~~g~~~~  245 (289)
                      ||..||++|++.|++..
T Consensus        78 GH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   78 GHRDCVKLLLQNGADRT   94 (117)
T ss_pred             hhHHHHHHHHHcCcccc
Confidence            99999999999999976

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.63  E-value=1.5e-15  Score=139.20  Aligned_cols=150  Identities=16%  Similarity=0.160  Sum_probs=123.0

Q ss_pred             CCchHHHHHHHc---CCHHHHHHHHhhCCCCcccc---cCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC--
Q 039376          110 GEHPQLRRALVR---KDWKEVERFISENPDTLYAK---FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD--  181 (289)
Q Consensus       110 ~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~---~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~--  181 (289)
                      .|.|.||.|.-.   ++-+++..|++..+.-++..   ..-.|+|+||+|+.+.+   .++|.+|++.  |+|++++-  
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~---~~~V~lLl~~--gADV~aRa~G  216 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRD---AELVRLLLAA--GADVHARACG  216 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhcc---HHHHHHHHHc--CCchhhHhhc
Confidence            678999988873   45578888887644333322   14568999999999999   9999999998  88877641  


Q ss_pred             ---------------------CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          182 ---------------------TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       182 ---------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                                           ..|..||.+|+..++.+++++|+++|+| ++.+|..|.|.||..+.+-..++..+++++
T Consensus       217 ~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~  295 (782)
T KOG3676|consen  217 AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALEL  295 (782)
T ss_pred             cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhc
Confidence                                 1477899999999999999999999999 499999999999999888888899999999


Q ss_pred             CCC--cccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          241 TGV--EEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       241 g~~--~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                      |++  ..          +.+..|.|||..|++.|..+
T Consensus       296 ga~~l~~----------v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  296 GANALEH----------VRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             CCCcccc----------ccccCCCChHHHHHHhhhHH
Confidence            999  66          88899999999999888765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.63  E-value=2.8e-15  Score=137.35  Aligned_cols=144  Identities=20%  Similarity=0.207  Sum_probs=126.9

Q ss_pred             cCCHHHHHHHHHcCCcC--------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCccccc--------C-----------
Q 039376           91 KTSEDWFREMVETGVKV--------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKF--------T-----------  143 (289)
Q Consensus        91 ~~~~~~~~~Ll~~g~~~--------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~--------~-----------  143 (289)
                      .++-++++.|++.-...        .+.|.||||+|+.+.+.++|+.|++ .|+|++.+.        +           
T Consensus       156 ~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~  234 (782)
T KOG3676|consen  156 DGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYT  234 (782)
T ss_pred             hhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCc
Confidence            34457777777764322        4589999999999999999999999 589987752        1           


Q ss_pred             ---CCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCC--CCCCCCCCC
Q 039376          144 ---ESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKN--LPNMRNRIG  218 (289)
Q Consensus       144 ---~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--i~~~~~~~g  218 (289)
                         -.|+.||..||..++   .+++++|+++  |+|++.+|..|+|.||..+.+-..++..+++++|++  . ..+|..|
T Consensus       235 G~~YfGEyPLSfAAC~nq---~eivrlLl~~--gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~-~v~N~qg  308 (782)
T KOG3676|consen  235 GYFYFGEYPLSFAACTNQ---PEIVRLLLAH--GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALE-HVRNNQG  308 (782)
T ss_pred             ceeeeccCchHHHHHcCC---HHHHHHHHhc--CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccc-cccccCC
Confidence               247899999999999   9999999999  999999999999999999999899999999999998  6 7899999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcC
Q 039376          219 QCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       219 ~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      -|||..|++.|..++.+.+++..
T Consensus       309 LTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  309 LTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             CChHHHHHHhhhHHHHHHHHHhh
Confidence            99999999999999999999883

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.63  E-value=2.7e-16  Score=147.10  Aligned_cols=149  Identities=17%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC--CCCCCH
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD--TSGGTP  187 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~--~~g~t~  187 (289)
                      .+.|+|.+||..|..++|+.||. .+++-..+ +....|||.+|...|.   .++|..||..  |..++.+.  +.|..|
T Consensus       823 tkdt~lSlacsggr~~vvelLl~-~gankehr-nvsDytPlsla~Sggy---~~iI~~llS~--GseInSrtgSklgisP  895 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGRTRVVELLLN-AGANKEHR-NVSDYTPLSLARSGGY---TKIIHALLSS--GSEINSRTGSKLGISP  895 (2131)
T ss_pred             ccCceEEEecCCCcchHHHHHHH-hhcccccc-chhhcCchhhhcCcch---HHHHHHHhhc--ccccccccccccCcch
Confidence            33344444444444444443333 23333333 3333444444444444   4444444443  33333321  233344


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMR-NRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE  266 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~  266 (289)
                      |++|...|+.+.++.|++.|.+| |.. ..+-+|+|-+|+..|+.+++.+||.+.+++.          ...+.|.|||.
T Consensus       896 Lmlatmngh~~at~~ll~~gsdi-NaqIeTNrnTaltla~fqgr~evv~lLLa~~anve----------hRaktgltplm  964 (2131)
T KOG4369|consen  896 LMLATMNGHQAATLSLLQPGSDI-NAQIETNRNTALTLALFQGRPEVVFLLLAAQANVE----------HRAKTGLTPLM  964 (2131)
T ss_pred             hhhhhhccccHHHHHHhcccchh-ccccccccccceeeccccCcchHHHHHHHHhhhhh----------hhcccCCcccc
Confidence            44444444444444444444333 211 1122334444444444444444444444443          44556667777


Q ss_pred             HHHHhCCCCc
Q 039376          267 ILIEFNFLGQ  276 (289)
Q Consensus       267 ~a~~~g~~~~  276 (289)
                      -++..|+.++
T Consensus       965 e~AsgGyvdv  974 (2131)
T KOG4369|consen  965 EMASGGYVDV  974 (2131)
T ss_pred             hhhcCCcccc
Confidence            6666666553

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.61  E-value=1.3e-15  Score=142.65  Aligned_cols=172  Identities=12%  Similarity=0.095  Sum_probs=83.3

Q ss_pred             HHhcCCHHHHHHHHHcCCcCCC-----CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHH
Q 039376           88 KQVKTSEDWFREMVETGVKVDL-----GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAH  162 (289)
Q Consensus        88 ~~~~~~~~~~~~Ll~~g~~~~~-----~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~  162 (289)
                      +...+.++++..|++.|..+|.     .|..||.+|+..|+...++.||+ .+.++|.....+.+|.|-+|+-.|+   .
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~-~gsdiNaqIeTNrnTaltla~fqgr---~  939 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ-PGSDINAQIETNRNTALTLALFQGR---P  939 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc-ccchhccccccccccceeeccccCc---c
Confidence            3344444444444444443322     34444444444444444444444 2444444333344444444444455   4


Q ss_pred             HHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-------------------------------
Q 039376          163 RLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLP-------------------------------  211 (289)
Q Consensus       163 ~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-------------------------------  211 (289)
                      +++.+||..  .+++..+-+.|.|||+-++..|.+++-++|+..|+|..                               
T Consensus       940 evv~lLLa~--~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~ 1017 (2131)
T KOG4369|consen  940 EVVFLLLAA--QANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD 1017 (2131)
T ss_pred             hHHHHHHHH--hhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc
Confidence            555555544  34444455555555555555555555555555554420                               


Q ss_pred             ---CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          212 ---NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       212 ---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                         ..+|++|.|+|..|+.-|++..+..|++++++++          ..+....+++..|.+.|++.
T Consensus      1018 atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d----------~qdnr~~S~~maafRKgh~~ 1074 (2131)
T KOG4369|consen 1018 ATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADAD----------QQDNRTNSRTMAAFRKGHFA 1074 (2131)
T ss_pred             cceecccCCCCcccchhccCCccccchHHhhcccChh----------hhhcccccccHHHHHhchhh
Confidence               2334445555555555555555555555555555          44444445555555555554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=1.4e-14  Score=126.57  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=105.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      ..|.-|+..|.+++|+.++.+ -.|+... +..|.|+||-|+..||   .+||+||+.+  |+++|..|.+||||||.|+
T Consensus       552 aLLLDaaLeGEldlVq~~i~e-v~DpSqp-NdEGITaLHNAiCagh---yeIVkFLi~~--ganVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYE-VTDPSQP-NDEGITALHNAICAGH---YEIVKFLIEF--GANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHh-hcCCCCC-CccchhHHhhhhhcch---hHHHHHHHhc--CCcccCccCCCCchhhhhh
Confidence            334458899999999999884 6777777 8999999999999999   9999999999  9999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHh
Q 039376          193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA--RSGHRETVEYLLS  239 (289)
Q Consensus       193 ~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~  239 (289)
                      .++++.++++|++.|+.+.-.+=.++.|+..-+-  +.|..+|.+||-.
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999875556678889887554  4688999999863

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=1.2e-13  Score=113.49  Aligned_cols=129  Identities=26%  Similarity=0.276  Sum_probs=116.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc--hHHHHHHHHHhccCCC---CccccCC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED--EAHRLLDEFLDMISPL---DLEETDT  182 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~--~~~~~v~~Ll~~~~g~---~~~~~~~  182 (289)
                      +..+.+++|.++..+..+.+++++. .+.+++.+ +..|.||||+|+..++.  -..+++++|++.  |+   ..+.++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~--g~~~~~~~~~~~  145 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEA--GADLDVNNLRDE  145 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHH-cCCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHc--CCCCCCccccCC
Confidence            4457899999999999999988888 58888888 99999999999998860  114899999999  88   6777799


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .|.||||+|+..|+.+++++|++.|++. +..+..|.|++++|+..++..++++++..+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999995 889999999999999999999999999976

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.53  E-value=2.6e-13  Score=111.46  Aligned_cols=119  Identities=26%  Similarity=0.378  Sum_probs=110.8

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCC-----HHHHHHHHHcCC--CCCCCCC
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGN-----TKAAKILVKYNK--NLPNMRN  215 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~--~i~~~~~  215 (289)
                      +..+.+++|.++..+.   .+++.+++..  +++++.++..|.||||+|+..++     .+++++|++.|+  +..+..+
T Consensus        70 ~~~~~~~~~~~~~~~~---~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          70 DLDGRLPLHSAASKGD---DKIVKLLLAS--GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             CccccCHHHHHHHcCc---HHHHHHHHHc--CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            5678999999999999   9999999999  99999999999999999999999     999999999999  5557779


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          216 RIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       216 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                      ..|+||||+|+..|+.+++++|++.|++++          ..+..|.|+++.+...|....
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~----------~~~~~g~t~l~~a~~~~~~~~  195 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPN----------SRNSYGVTALDPAAKNGRIEL  195 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCc----------ccccCCCcchhhhcccchHHH
Confidence            999999999999999999999999999999          888899999999998887664

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=9.7e-14  Score=121.35  Aligned_cols=102  Identities=21%  Similarity=0.205  Sum_probs=90.8

Q ss_pred             HHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Q 039376          151 HSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH  230 (289)
Q Consensus       151 h~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~  230 (289)
                      .-|+..|.   +++|+-++..  -.|+...+..|.|+||.|+..|+.+||+||++.|+++ |..|.+||||||+|+..++
T Consensus       555 LDaaLeGE---ldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  555 LDAALEGE---LDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             Hhhhhcch---HHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCc
Confidence            44788899   9999999988  6888999999999999999999999999999999996 9999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCCccc-ccccchHHHHH
Q 039376          231 RETVEYLLSVTGVEEEDSHEKYSNPFA-GECGLKLLEIL  268 (289)
Q Consensus       231 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~-~~~g~~~l~~a  268 (289)
                      +.+++.|++.|+-+.          +. -.++.|+..-|
T Consensus       629 v~~ckqLVe~Gaavf----------AsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVF----------ASTLSDMETAAEKC  657 (752)
T ss_pred             hHHHHHHHhccceEE----------eeecccccchhhhc
Confidence            999999999999987          43 33566666544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.48  E-value=2.5e-13  Score=128.74  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      +.|+.|+..|+.+.++.|+. .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.+|..|.||||+|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~-d~~G~TpLh~Aa~~g~---~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT-GGADPNCR-DYDGRTPLHIACANGH---VQVVRVLLEF--GADPTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCcHHHHHHHCCC---HHHHHHHHHC--CCCCCCCCCCCCCHHHHHH
Confidence            45777777777777777776 56777777 7777777777777777   7777777777  7777777777777777777


Q ss_pred             HhCCHHHHHHHHHc-------CCCCCCCCCCCCCCHHHHH
Q 039376          193 IVGNTKAAKILVKY-------NKNLPNMRNRIGQCPIHCA  225 (289)
Q Consensus       193 ~~g~~~~v~~Ll~~-------g~~i~~~~~~~g~t~L~~A  225 (289)
                      ..|+.+++++|+++       |++. +..+..|.+|+..+
T Consensus       157 ~~g~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~  195 (664)
T PTZ00322        157 ENGFREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLED  195 (664)
T ss_pred             HCCcHHHHHHHHhCCCcccccCCCC-CccccCCCCccchh
Confidence            77777777777776       6663 66666777665543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.6e-13  Score=86.89  Aligned_cols=54  Identities=37%  Similarity=0.639  Sum_probs=33.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 039376          184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL  238 (289)
Q Consensus       184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  238 (289)
                      |+||||+|++.|+.+++++|+++|.++ +.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456777777777777777777776664 666777777777777777777777664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=7.7e-13  Score=125.42  Aligned_cols=85  Identities=22%  Similarity=0.339  Sum_probs=40.2

Q ss_pred             HHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Q 039376          150 FHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG  229 (289)
Q Consensus       150 Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~  229 (289)
                      |+.|+..|+   .+++++|++.  |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|
T Consensus        86 L~~aa~~G~---~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         86 LCQLAASGD---AVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHcCC---HHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCC
Confidence            444444444   4444444444  4444444444444444444444444444444444442 444444444444444444


Q ss_pred             CHHHHHHHHhc
Q 039376          230 HRETVEYLLSV  240 (289)
Q Consensus       230 ~~~~~~~Ll~~  240 (289)
                      +.+++++|+++
T Consensus       160 ~~~iv~~Ll~~  170 (664)
T PTZ00322        160 FREVVQLLSRH  170 (664)
T ss_pred             cHHHHHHHHhC
Confidence            44444444444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=4.7e-13  Score=84.72  Aligned_cols=54  Identities=30%  Similarity=0.371  Sum_probs=27.3

Q ss_pred             CChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHH
Q 039376          146 CGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILV  204 (289)
Q Consensus       146 ~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  204 (289)
                      |.||||+|+..|+   .+++++|++.  |.+++.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~---~~~~~~Ll~~--~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGN---LEIVKLLLEH--GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT----HHHHHHHHHT--TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCC---HHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            3455555555555   5555555555  5555555555555555555555555555553

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.42  E-value=2.6e-13  Score=86.40  Aligned_cols=50  Identities=32%  Similarity=0.560  Sum_probs=26.1

Q ss_pred             CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Q 039376          175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCA  225 (289)
Q Consensus       175 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A  225 (289)
                      .+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            667777777777777777777777777777777774 77777777777765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.41  E-value=2.5e-13  Score=86.51  Aligned_cols=55  Identities=29%  Similarity=0.408  Sum_probs=33.0

Q ss_pred             HHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHH
Q 039376          203 LVKYN-KNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEIL  268 (289)
Q Consensus       203 Ll~~g-~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a  268 (289)
                      |+++| .+ ++.+|..|.||||+|+.+|+.+++++|++.|++++          +++..|+||+++|
T Consensus         1 LL~~~~~~-~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~----------~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPAD-VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN----------AKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T---TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT-------------TTS--HHHH-
T ss_pred             CCccCcCC-CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC----------CCcCCCCCHHHhC
Confidence            56777 66 49999999999999999999999999999999999          9999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=4.5e-12  Score=103.47  Aligned_cols=121  Identities=21%  Similarity=0.273  Sum_probs=96.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcccc-CCCCCCHHHH
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEET-DTSGGTPLTS  190 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~-~~~g~t~L~~  190 (289)
                      ..||.-++-++..+.+..||+. ...++.+ |..|.++|..|+..|+   .++|+.|++.  |+|+|.. +..+.||||+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-D~sGMs~LahAaykGn---l~~v~lll~~--gaDvN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-VRQVNQR-DPSGMSVLAHAAYKGN---LTLVELLLEL--GADVNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-hhhhhcc-CCCcccHHHHHHhcCc---HHHHHHHHHh--CCCcCcccccccccHHHH
Confidence            4678888888888888888873 5667777 8888888888888888   8888888888  8887764 4567788888


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          191 AAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       191 A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      |+.+|+.+++++|++.|+. +...|.-|+|+-..|+.-|+.+||..+-.+
T Consensus        86 AALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            8888888888888888888 477888888888888888888888765533

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.35  E-value=1e-11  Score=101.39  Aligned_cols=112  Identities=17%  Similarity=0.085  Sum_probs=96.4

Q ss_pred             HhcCCHHHHHHHHHcCC--c-CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHH
Q 039376           89 QVKTSEDWFREMVETGV--K-VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLL  165 (289)
Q Consensus        89 ~~~~~~~~~~~Ll~~g~--~-~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v  165 (289)
                      +.++..+-...|++.--  + .|.+|.++|..|+.+|+.++++.+|+ .|+++|......+.||||+|+.+|+   .++.
T Consensus        20 i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~qhg~~YTpLmFAALSGn---~dvc   95 (396)
T KOG1710|consen   20 IDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQHGTLYTPLMFAALSGN---QDVC   95 (396)
T ss_pred             HccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCcccccccccHHHHHHHcCC---chHH
Confidence            34455666666666422  2 37799999999999999999999998 7999998767889999999999999   9999


Q ss_pred             HHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc
Q 039376          166 DEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY  206 (289)
Q Consensus       166 ~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  206 (289)
                      ..|++.  |+.....+.-|+|+-..|+..|+.++|..+-.+
T Consensus        96 rlllda--Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   96 RLLLDA--GARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHhc--cCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999  999999999999999999999999999877643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.94  E-value=2.3e-09  Score=93.22  Aligned_cols=166  Identities=19%  Similarity=0.111  Sum_probs=120.6

Q ss_pred             CCCCCcCCcCc--ccccccCCCCCCCchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhcc
Q 039376            5 KPASSDLSKND--NKINEMKPMNSSQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSH   82 (289)
Q Consensus         5 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   82 (289)
                      -|+.|..|..=  --.|.|-.+-.++|.-++..+-.....-+-|++.+.......            |+..       +.
T Consensus       430 LPAKSgVsG~mivVvPNVMGi~l~SPpLDklGNs~rGv~Fc~~Lvs~fNFHNYD~------------L~h~-------~~  490 (622)
T KOG0506|consen  430 LPAKSGVSGAMIVVVPNVMGIALYSPPLDKLGNSCRGVAFCRQLVSKFNFHNYDS------------LRHP-------DN  490 (622)
T ss_pred             CcccccccccEEEEeccceeeeeccCCchhhcCccccHHHHHHHHHHhcccCchh------------hccc-------cc
Confidence            45566555431  112567777778888888877777777777777664333222            1100       00


Q ss_pred             ccccHHHhcCCHHHHHHHHHcCCcCCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHH
Q 039376           83 ERQQIKQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAH  162 (289)
Q Consensus        83 ~~~~~~~~~~~~~~~~~Ll~~g~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~  162 (289)
                      ....+             ..++...+..+..++.+|++.|++..++.+.- .+.++..+ |...+|.||.|+..|+   +
T Consensus       491 ~K~DP-------------RR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~-DyD~RTaLHvAAaEG~---v  552 (622)
T KOG0506|consen  491 RKIDP-------------RREGGPRENDTVINVMYAAKNGDLSALRRFAL-QGMDLETK-DYDDRTALHVAAAEGH---V  552 (622)
T ss_pred             ccCCc-------------ccccCcccccchhhhhhhhhcCCHHHHHHHHH-hccccccc-ccccchhheeecccCc---e
Confidence            00000             01222334566788999999999999998877 58999999 9999999999999999   9


Q ss_pred             HHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Q 039376          163 RLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNK  208 (289)
Q Consensus       163 ~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  208 (289)
                      +++++|++.. +.+++.+|++|+|||.-|...++.+++++|-+...
T Consensus       553 ~v~kfl~~~~-kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  553 EVVKFLLNAC-KVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             eHHHHHHHHH-cCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            9999999987 78999999999999999999999999999987643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.88  E-value=1.3e-09  Score=100.65  Aligned_cols=83  Identities=20%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCc
Q 039376          177 LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNP  255 (289)
Q Consensus       177 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  255 (289)
                      .+.+|..|+|+||+++..+..++++||+.+|+++ ..+|. .|+||||-|+.+|+++|+-.||.+|+...          
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~----------  113 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR----------  113 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCceE----------
Confidence            3444555555555555555555555555555554 44443 45555555555555555555555555555          


Q ss_pred             ccccccchHHHHHHH
Q 039376          256 FAGECGLKLLEILIE  270 (289)
Q Consensus       256 ~~~~~g~~~l~~a~~  270 (289)
                      ++|++|..||++..+
T Consensus       114 i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EecccCCCHHHHHhh
Confidence            555555555555444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.83  E-value=4.9e-09  Score=57.21  Aligned_cols=29  Identities=38%  Similarity=0.540  Sum_probs=21.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          217 IGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      +|+||||+|+..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.79  E-value=6.9e-09  Score=90.32  Aligned_cols=94  Identities=26%  Similarity=0.269  Sum_probs=84.2

Q ss_pred             CCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Q 039376          144 ESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIH  223 (289)
Q Consensus       144 ~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~  223 (289)
                      ..+..++++|+..|.   +..++.+.-.  |.+++.+|.+.+|+||.|+.-|+.++++||++...--+..+|.+|+|||.
T Consensus       504 ~~~~i~~~~aa~~GD---~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGD---LSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             ccchhhhhhhhhcCC---HHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcch
Confidence            455678999999999   9988877777  89999999999999999999999999999998744337899999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCC
Q 039376          224 CAARSGHRETVEYLLSVTG  242 (289)
Q Consensus       224 ~A~~~~~~~~~~~Ll~~g~  242 (289)
                      -|...+|.+++++|-+...
T Consensus       579 dA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhHhcCcHHHHHHHHHHhc
Confidence            9999999999999987655

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.79  E-value=3.1e-08  Score=86.78  Aligned_cols=86  Identities=22%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHH
Q 039376          114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAI  193 (289)
Q Consensus       114 ~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~  193 (289)
                      -||..++.|+.+..-.||. .|+++|..-...|.||||.|+..|+   .--+++|+-+  |+|++..|.+|.||+.+|-.
T Consensus       136 QLhasvRt~nlet~LRll~-lGA~~N~~hpekg~TpLHvAAk~Gq---~~Q~ElL~vY--GAD~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLS-LGAQANFFHPEKGNTPLHVAAKAGQ---ILQAELLAVY--GADPGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHhhcccHHHHHHHHH-cccccCCCCcccCCchhHHHHhccc---hhhhhHHhhc--cCCCCCCCCCCCcHHHHHHh
Confidence            5999999999999888988 6899998745679999999999999   9999999999  99999999999999999999


Q ss_pred             hCCHHHHHHHHH
Q 039376          194 VGNTKAAKILVK  205 (289)
Q Consensus       194 ~g~~~~v~~Ll~  205 (289)
                      .|+.++.+.|++
T Consensus       210 ~gH~~laeRl~e  221 (669)
T KOG0818|consen  210 GGHHELAERLVE  221 (669)
T ss_pred             cCchHHHHHHHH
Confidence            999888777765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.73  E-value=5.4e-08  Score=86.63  Aligned_cols=118  Identities=24%  Similarity=0.300  Sum_probs=97.2

Q ss_pred             HHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCC--CccccCCCCCCHHHHHHH
Q 039376          116 RRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPL--DLEETDTSGGTPLTSAAI  193 (289)
Q Consensus       116 h~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~--~~~~~~~~g~t~L~~A~~  193 (289)
                      .-|+..+++--++.... .|.++..+ +....+.||+|+..|+   -++|+|+|+.  |.  -++..++.|.|+||-|+.
T Consensus       871 l~av~~~D~~klqE~h~-~gg~ll~~-~~~~~sllh~a~~tg~---~eivkyildh--~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHL-NGGSLLIQ-GPDHCSLLHYAAKTGN---GEIVKYILDH--GPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHhccHHHHHHHHh-cCCceEee-CcchhhHHHHHHhcCC---hHHHHHHHhc--CCHHHHHHHhhhhhHHHHHHHH
Confidence            34555554433333444 46677777 8888999999999999   9999999998  44  367778899999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          194 VGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       194 ~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .++-.++++|++.|+.+ ..+|..|.||-.-|-+.|..+++.||-.+.
T Consensus       944 ~~~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hcchHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999996 889999999999999999999999987553

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.71  E-value=9.2e-09  Score=95.12  Aligned_cols=80  Identities=16%  Similarity=0.089  Sum_probs=57.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |..|+|+||+|+..+..++++|||+ +|.+++.+....|+||||-|+.+|+   ++++..||.+  |..+..+|+.|..|
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~---idca~lLL~~--g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQDEESGYTALHRAIYYGN---IDCASLLLSK--GRSLRIKDKEGLSP  122 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHh-cCceeeeccccccchHhhHhhhhch---HHHHHHHHhc--CCceEEecccCCCH
Confidence            5567777777777777777777777 4777777633457777777777777   7777777777  77777777777777


Q ss_pred             HHHHHH
Q 039376          188 LTSAAI  193 (289)
Q Consensus       188 L~~A~~  193 (289)
                      |..-++
T Consensus       123 lq~~~r  128 (1267)
T KOG0783|consen  123 LQFLSR  128 (1267)
T ss_pred             HHHHhh
Confidence            776554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.69  E-value=2.7e-08  Score=55.73  Aligned_cols=29  Identities=34%  Similarity=0.509  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          217 IGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      +|+||||+|+.+|+.+++++|+++|++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            47899999999999999999999999988

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.68  E-value=3.5e-08  Score=53.82  Aligned_cols=28  Identities=36%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVKYNKNL  210 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i  210 (289)
                      +|+||||+|++.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            3667777777777777777777777664

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.65  E-value=1.5e-07  Score=82.53  Aligned_cols=87  Identities=24%  Similarity=0.357  Sum_probs=79.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhccCCCCccccCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Q 039376          149 LFHSMANINEDEAHRLLDEFLDMISPLDLEETDT-SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAAR  227 (289)
Q Consensus       149 ~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~  227 (289)
                      .||-.++.|+   .+..-.||..  |+++|..+. .|.||||.|++.|+.--+++|+-+|+++ ...|..|.||+.+|-.
T Consensus       136 QLhasvRt~n---let~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  136 QLHSSVRTGN---LETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHhhccc---HHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHh
Confidence            4899999999   9999999999  999988765 6899999999999999999999999995 9999999999999999


Q ss_pred             cCCHHHHHHHHhcC
Q 039376          228 SGHRETVEYLLSVT  241 (289)
Q Consensus       228 ~~~~~~~~~Ll~~g  241 (289)
                      .||-++.+.|++..
T Consensus       210 ~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  210 GGHHELAERLVEIQ  223 (669)
T ss_pred             cCchHHHHHHHHHH
Confidence            99999888776543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.60  E-value=1.5e-07  Score=83.42  Aligned_cols=86  Identities=26%  Similarity=0.464  Sum_probs=48.5

Q ss_pred             HHHHHhcCCchHHHHHHH-HHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Q 039376          150 FHSMANINEDEAHRLLDE-FLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS  228 (289)
Q Consensus       150 Lh~A~~~g~~~~~~~v~~-Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~  228 (289)
                      +|+++....   .+-+.. +.... ...++..|..|.||||+|+..|+.+.++.|+..|+++ ..+|..||+|||.|+..
T Consensus        24 lh~~~~~~~---~~sl~~el~~~~-~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   24 LHWAVVTTD---SDSLEQELLAKV-SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cchhhhccc---hhhHHHHHhhhh-hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHc
Confidence            555555544   333322 22221 3445556666666666666666666666666666664 66666666666666666


Q ss_pred             CCHHHHHHHHhc
Q 039376          229 GHRETVEYLLSV  240 (289)
Q Consensus       229 ~~~~~~~~Ll~~  240 (289)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            666655555533

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.60  E-value=8.5e-08  Score=53.69  Aligned_cols=31  Identities=39%  Similarity=0.595  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Q 039376          184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN  215 (289)
Q Consensus       184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~  215 (289)
                      |.||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            566666666666666666666666663 5544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.55  E-value=3.1e-07  Score=81.88  Aligned_cols=105  Identities=21%  Similarity=0.224  Sum_probs=87.4

Q ss_pred             HHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccC
Q 039376           97 FREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMIS  173 (289)
Q Consensus        97 ~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~  173 (289)
                      ++.....|.++   +.+.++.||+|+..|+-++|+++|...+..+....+..|.|+||-|+..++   ..++++|++.  
T Consensus       882 lqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~---r~vc~~lvda--  956 (1004)
T KOG0782|consen  882 LQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN---RAVCQLLVDA--  956 (1004)
T ss_pred             HHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc---hHHHHHHHhc--
Confidence            34444445443   456689999999999999999999965443333337899999999999999   9999999999  


Q ss_pred             CCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc
Q 039376          174 PLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY  206 (289)
Q Consensus       174 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  206 (289)
                      |+.+..+|..|.||-.-|-+.|..++.-||-..
T Consensus       957 gasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  957 GASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             chhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999998754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.45  E-value=7.4e-07  Score=79.69  Aligned_cols=90  Identities=21%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             HHHHHhcCCchHHHHHHHHHhccCCCC--cc--ccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Q 039376          150 FHSMANINEDEAHRLLDEFLDMISPLD--LE--ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCA  225 (289)
Q Consensus       150 Lh~A~~~g~~~~~~~v~~Ll~~~~g~~--~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A  225 (289)
                      |.-|+.-..   +..+-+||.+  |..  ++  ..+..|+|+||+||+.|++.+.++|+=+|+++ -.+|..|+|+|.+|
T Consensus       628 Ll~A~~~~D---l~t~~lLLAh--g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  628 LLRAVAAED---LQTAILLLAH--GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHH---HHHHHHHHhc--cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhH
Confidence            344554444   6667778877  543  22  23457799999999999999999999999996 89999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcc
Q 039376          226 ARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       226 ~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      -+.|.-+|+.+|+++|+..+
T Consensus       702 r~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhcccHHHHHHHHHcCCCcc
Confidence            99999999999999999877

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.44  E-value=1.2e-06  Score=81.96  Aligned_cols=123  Identities=15%  Similarity=0.090  Sum_probs=95.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCC---CcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPD---TLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT  186 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~---~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t  186 (289)
                      .+.-..-.|+..|+.-.|+..+++...   +++.. |..|+++|+.|..+.+   .+++++|++.  +...       ..
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nen---le~~eLLl~~--~~~~-------gd   90 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNEN---LELQELLLDT--SSEE-------GD   90 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceeccccccc---HHHHHHHhcC--cccc-------ch
Confidence            444566688999999988888875332   45666 8889999999999999   9999999987  3333       35


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCC---------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          187 PLTSAAIVGNTKAAKILVKYNKNL---------PNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~Ll~~g~~i---------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      +|.+|+..|..++|++++.+....         ....-.-+-|||..||..++.||+++|+++|+.+.
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            788899999999999998764331         11233456799999999999999999999999877

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.31  E-value=2.3e-06  Score=76.05  Aligned_cols=59  Identities=14%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhc
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM  171 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~  171 (289)
                      |..|.||||+|+..|+...+..|+. .++++..+ +..|++|||.|+..|+   ..++..++.+
T Consensus        52 D~~g~TpLhlAV~Lg~~~~a~~Ll~-a~Adv~~k-N~~gWs~L~EAv~~g~---~q~i~~vlr~  110 (560)
T KOG0522|consen   52 DPPGRTPLHLAVRLGHVEAARILLS-AGADVSIK-NNEGWSPLHEAVSTGN---EQIITEVLRH  110 (560)
T ss_pred             cCCCCccHHHHHHhcCHHHHHHHHh-cCCCcccc-ccccccHHHHHHHcCC---HHHHHHHHHH
Confidence            5566777777777777777776666 46666666 7777777777777777   6666666654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.26  E-value=3.5e-06  Score=75.46  Aligned_cols=89  Identities=19%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             HHHHHHcCCHHHHHHHHhhCCCCcc---cccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH
Q 039376          115 LRRALVRKDWKEVERFISENPDTLY---AKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA  191 (289)
Q Consensus       115 Lh~A~~~g~~~~v~~ll~~~~~~~~---~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A  191 (289)
                      |.-|+...+...+-.||. +|....   ...+..|.|+||+||+.|+   ..+.++|+=+  |+|+..+|..|+|+|.||
T Consensus       628 Ll~A~~~~Dl~t~~lLLA-hg~~~e~~~t~~~~~grt~LHLa~~~gn---Vvl~QLLiWy--g~dv~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLA-HGSREEVNETCGEGDGRTALHLAARKGN---VVLAQLLIWY--GVDVMARDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHHHHHHHHHHh-ccCchhhhccccCCCCcchhhhhhhhcc---hhHHHHHHHh--CccceecccCCchhhhhH
Confidence            444555566666666776 343221   1225678999999999999   9999999977  999999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCC
Q 039376          192 AIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       192 ~~~g~~~~v~~Ll~~g~~  209 (289)
                      -+.|..+++..|+.+|+-
T Consensus       702 r~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhcccHHHHHHHHHcCCC
Confidence            999999999999999874

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.17  E-value=2.6e-06  Score=81.40  Aligned_cols=127  Identities=17%  Similarity=0.119  Sum_probs=98.6

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      +..|.+.+|+++..+..-+++.+++-.+...... +..|...+|+++..|    .+..-+++... |..++.+|..||||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el-d~d~qgV~hfca~lg----~ewA~ll~~~~-~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL-DRDGQGVIHFCAALG----YEWAFLPISAD-GVAIDIRDRNGWTP  644 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhh-cccCCChhhHhhhcC----CceeEEEEeec-ccccccccCCCCcc
Confidence            5689999999999999999999887424444444 778888899855555    45544444332 78899999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNL-----PNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      ||||+..|+..++.-|++.|++-     |+.....|.|+-.+|..+|+..+.-+|-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999877652     233344688999999999998888887765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.14  E-value=3.5e-06  Score=80.61  Aligned_cols=89  Identities=25%  Similarity=0.344  Sum_probs=80.3

Q ss_pred             CCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Q 039376          144 ESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIH  223 (289)
Q Consensus       144 ~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~  223 (289)
                      ..|.|+||.|+..+.   ..++++|+..  |++++..+..|++|+|.+...|+...+..|++.|++ ++..+..|.+|++
T Consensus       654 ~~~~s~lh~a~~~~~---~~~~e~ll~~--ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGD---SGAVELLLQN--GADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccch---HHHHHHHHhc--CCcchhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhh
Confidence            467899999999999   9999999999  999999999999999999999999999999999999 6999999999999


Q ss_pred             HHHHcCCHHHHHHHH
Q 039376          224 CAARSGHRETVEYLL  238 (289)
Q Consensus       224 ~A~~~~~~~~~~~Ll  238 (289)
                      +|....+.+++-++.
T Consensus       728 ~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  728 IAMEAANADIVLLLR  742 (785)
T ss_pred             HHhhhccccHHHHHh
Confidence            998777766655444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.14  E-value=7.1e-06  Score=70.10  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=70.9

Q ss_pred             ChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Q 039376          147 GTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA  226 (289)
Q Consensus       147 ~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~  226 (289)
                      +.-|..||+.|.   .+.|++|++.  |.++|+.|....+||.+|+-.|+.+++++|++.|+-. +.-...|..++.-| 
T Consensus        37 f~elceacR~GD---~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~Yga-  109 (516)
T KOG0511|consen   37 FGELCEACRAGD---VDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCHYGA-  109 (516)
T ss_pred             hHHHHHHhhccc---HHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhhhhh-
Confidence            556889999999   9999999998  9999999999999999999999999999999999974 44555777765433 


Q ss_pred             HcCCHHHHHHHHhcCCC
Q 039376          227 RSGHRETVEYLLSVTGV  243 (289)
Q Consensus       227 ~~~~~~~~~~Ll~~g~~  243 (289)
                      .+  ..|-++|+++..-
T Consensus       110 Ln--d~IR~mllsydi~  124 (516)
T KOG0511|consen  110 LN--DRIRRMLLSYDIL  124 (516)
T ss_pred             hh--HHHHHHHHHHHHH
Confidence            32  3455677766544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.06  E-value=1.5e-05  Score=68.25  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=81.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA  191 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A  191 (289)
                      .--|..||+.|..+.|++|++ .|.++|.. |....+||.+|+..||   .++|++||+.  |+--..-.-.|. --||+
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~v-D~fD~spL~lAsLcGH---e~vvklLLen--GAiC~rdtf~G~-RC~Yg  108 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAV-DRFDSSPLYLASLCGH---EDVVKLLLEN--GAICSRDTFDGD-RCHYG  108 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchh-hcccccHHHHHHHcCc---HHHHHHHHHc--CCcccccccCcc-hhhhh
Confidence            457899999999999999999 69999999 9999999999999999   9999999999  875543333443 33554


Q ss_pred             HHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-----CCHHHHHHHHhcCCCcc
Q 039376          192 AIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS-----GHRETVEYLLSVTGVEE  245 (289)
Q Consensus       192 ~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~-----~~~~~~~~Ll~~g~~~~  245 (289)
                      +-+.  .+=+.|+++...  .+.+...--+-|+....     |...-+.++.+.|++.+
T Consensus       109 aLnd--~IR~mllsydi~--KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~  163 (516)
T KOG0511|consen  109 ALND--RIRRMLLSYDIL--KAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFD  163 (516)
T ss_pred             hhhH--HHHHHHHHHHHH--HHhhccCCcchHHHHHhhccccccccchHHHhhcccccc
Confidence            4432  234456654332  22232222233444432     22233446666666653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.02  E-value=4e-06  Score=80.26  Aligned_cols=87  Identities=23%  Similarity=0.243  Sum_probs=78.6

Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCccccccc
Q 039376          182 TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECG  261 (289)
Q Consensus       182 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g  261 (289)
                      ..|.|+||.|+..|..-++++|++.|+++ +..+..|++|+|.+...|+...+..|+++|++++          +.+.+|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~----------a~~~~~  722 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPN----------AFDPDG  722 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccccc----------ccCccC
Confidence            36789999999999999999999999996 9999999999999999999999999999999999          999999


Q ss_pred             chHHHHHHHhCCCCcccc
Q 039376          262 LKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       262 ~~~l~~a~~~g~~~~~~~  279 (289)
                      ..++++|....+-++.+.
T Consensus       723 ~~~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVLL  740 (785)
T ss_pred             cchhhHHhhhccccHHHH
Confidence            999999977655554333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.00  E-value=1.8e-05  Score=61.45  Aligned_cols=67  Identities=15%  Similarity=0.029  Sum_probs=41.5

Q ss_pred             CcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC-CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Q 039376          137 TLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP-LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       137 ~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      +++.+ |..|+|+++.|+..|.   .+.+.||+..  | +.+...|..|.+++.+|-+.|..++++.|.+...+
T Consensus         4 ~in~r-D~fgWTalmcaa~eg~---~eavsyllgr--g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINAR-DAFGWTALMCAAMEGS---NEAVSYLLGR--GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             Cccch-hhhcchHHHHHhhhcc---hhHHHHHhcc--CcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            45555 6666666666666666   6666666666  5 55666666666666666666666666666655333

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.97  E-value=4.1e-05  Score=71.98  Aligned_cols=113  Identities=15%  Similarity=0.103  Sum_probs=87.1

Q ss_pred             HHHhcCCHHHHHHHHHcCCc--C-----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc
Q 039376           87 IKQVKTSEDWFREMVETGVK--V-----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED  159 (289)
Q Consensus        87 ~~~~~~~~~~~~~Ll~~g~~--~-----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~  159 (289)
                      .++..|....++..++....  .     |.-|.++|++|....+.+++++|+++ +..        -..+|.+|++.|. 
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~--------~gdALL~aI~~~~-  100 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSE--------EGDALLLAIAVGS-  100 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC-ccc--------cchHHHHHHHHHH-
Confidence            36677778777777765332  1     55789999999999999999999984 322        1567889999999 


Q ss_pred             hHHHHHHHHHhccCCCC--------ccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Q 039376          160 EAHRLLDEFLDMISPLD--------LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLP  211 (289)
Q Consensus       160 ~~~~~v~~Ll~~~~g~~--------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~  211 (289)
                        .++|+.++....+..        ....-..+.||+++||..++.|+++.|+.+|+.++
T Consensus       101 --v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  101 --VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             --HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence              999999998741110        11122457899999999999999999999999975

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.97  E-value=1e-05  Score=77.39  Aligned_cols=124  Identities=18%  Similarity=0.163  Sum_probs=91.8

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVK-YNKNLPNMRNRIGQCP  221 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~g~t~  221 (289)
                      ...|.+.+|+++..+.   .-.++.+++.- +......|..|...+|+++..| .+..-+++. .|..+ +.+|..||||
T Consensus       571 ~~r~~lllhL~a~~ly---awLie~~~e~~-~~~~~eld~d~qgV~hfca~lg-~ewA~ll~~~~~~ai-~i~D~~G~tp  644 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLY---AWLIEKVIEWA-GSGDLELDRDGQGVIHFCAALG-YEWAFLPISADGVAI-DIRDRNGWTP  644 (975)
T ss_pred             CCcchHHHHHHHHHhH---HHHHHHHhccc-ccCchhhcccCCChhhHhhhcC-CceeEEEEeeccccc-ccccCCCCcc
Confidence            5678999999999999   88888888731 3444556778888889855544 454444443 46665 9999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          222 IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       222 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                      ||||+.+|+..++..|.+-|++..-    .+...-....|.|+...+..+|+.++
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~----~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGA----VTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhcccccc----ccCCCCCCCCCCchhhhhhcccccch
Confidence            9999999999999999999988760    00001234468888888888888763

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.83  E-value=6.4e-05  Score=58.51  Aligned_cols=71  Identities=10%  Similarity=0.004  Sum_probs=59.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSG  184 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g  184 (289)
                      |..|+|+++.|+..|..+.+.+|+.++-+.+.+. +..+.+.+.+|-..|.   .+++..|.+.  ..+-...+...
T Consensus         9 D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~-d~ssldaaqlaek~g~---~~fvh~lfe~--~~ets~p~nss   79 (223)
T KOG2384|consen    9 DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVT-DESSLDAAQLAEKGGA---QAFVHSLFEN--DRETSHPMNSS   79 (223)
T ss_pred             hhhcchHHHHHhhhcchhHHHHHhccCccccccc-ccccchHHHHHHhcCh---HHHHHHHHHH--hccCCCcccCC
Confidence            6789999999999999999999999644888888 9999999999999999   9999999887  34443444333

>smart00248 ANK ankyrin repeats

Probab=97.04  E-value=0.0012  Score=34.25  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=17.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCc
Q 039376          218 GQCPIHCAARSGHRETVEYLLSVTGVE  244 (289)
Q Consensus       218 g~t~L~~A~~~~~~~~~~~Ll~~g~~~  244 (289)
                      |.||+|+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            556666666666667766666666654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.45  E-value=0.0065  Score=31.27  Aligned_cols=26  Identities=38%  Similarity=0.515  Sum_probs=19.6

Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Q 039376          184 GGTPLTSAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       184 g~t~L~~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      |.||+|+|+..++.+++++|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56777777777777788777777665

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.21  E-value=0.0061  Score=54.45  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=48.1

Q ss_pred             HHHHHHHHHcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHH
Q 039376          197 TKAAKILVKYNKNL-----PNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILI  269 (289)
Q Consensus       197 ~~~v~~Ll~~g~~i-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~  269 (289)
                      ...+++|.+.+.+.     |...+.--.|+||+|+..|.-+++.+||+.|+|+.          .+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~----------~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS----------TKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCch----------hcccCCCCcccccc
Confidence            45678888877664     22233345689999999999999999999999999          77777777775544

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.88  E-value=0.018  Score=51.63  Aligned_cols=42  Identities=26%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             CChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          146 CGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       146 ~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      --|+||||+..|.   .++|.+||+.  |+|+..+|..|+||..++.
T Consensus       430 tsT~LH~aa~qg~---~k~v~~~Lee--g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGA---RKCVKYFLEE--GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcch---HHHHHHHHHh--cCCchhcccCCCCcccccc
Confidence            4577788777777   7777777777  7777777777777777765

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.28  E-value=0.13  Score=41.70  Aligned_cols=117  Identities=10%  Similarity=0.143  Sum_probs=76.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC----CCCCHHH
Q 039376          114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT----SGGTPLT  189 (289)
Q Consensus       114 ~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~----~g~t~L~  189 (289)
                      .|--|+...+.+.+.-++..         ...-.++|.++...+.   .+++.+|++++   ....+|-    .+..-+-
T Consensus       156 sledAV~AsN~~~i~~~Vtd---------KkdA~~Am~~si~~~K---~dva~~lls~f---~ft~~dv~~~~~~~ydie  220 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTD---------KKDAHQAMWLSIGNAK---EDVALYLLSKF---NFTKQDVASMEKELYDIE  220 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcc---------hHHHHHHHHHHhcccH---HHHHHHHHhhc---ceecchhhhcCcchhhHH
Confidence            45556666666666655542         2334567888887777   88888888763   2333321    1222333


Q ss_pred             HHHH--hCCHHHHHHHHHcCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          190 SAAI--VGNTKAAKILVKYNKNLPNM---RNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       190 ~A~~--~g~~~~v~~Ll~~g~~i~~~---~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      |+..  ..+..++++++++|--.+|.   +-+.|.|.|.-|.++++.+++.+|+++||-..
T Consensus       221 Y~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  221 YLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             HHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcccc
Confidence            3322  24567888888887643332   33579999999999999999999999998543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.08  E-value=0.26  Score=38.72  Aligned_cols=133  Identities=14%  Similarity=0.113  Sum_probs=67.2

Q ss_pred             HHhcCCHHHHHHHHHcCCcCCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHH-
Q 039376           88 KQVKTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLD-  166 (289)
Q Consensus        88 ~~~~~~~~~~~~Ll~~g~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~-  166 (289)
                      |+..+...+++...+...+--...++.+-.||+..+.++|+|+-+.    +.   -..-.+.+..|.....   .++.. 
T Consensus        53 AVk~nmL~ILqkyke~L~~~~~~~q~LFElAC~~qkydiV~WI~qn----L~---i~~~~~iFdIA~~~kD---lsLysl  122 (192)
T PF03158_consen   53 AVKYNMLSILQKYKEDLENERYLNQELFELACEEQKYDIVKWIGQN----LH---IYNPEDIFDIAFAKKD---LSLYSL  122 (192)
T ss_pred             HHHcCcHHHHHHHHHHhhcchhHHHHHHHHHHHHccccHHHHHhhc----cC---CCCchhhhhhhhhccc---hhHHHH
Confidence            3344444555544443222112445566677777777777776331    11   1122344556666555   44311 


Q ss_pred             ---HHHhccCCCCccccCCC--CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 039376          167 ---EFLDMISPLDLEETDTS--GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS  239 (289)
Q Consensus       167 ---~Ll~~~~g~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  239 (289)
                         +++..  ...-...|..  -..-|.+|+..|..+.+--.+++|.++ +.      ++|..|+.+++-.++.+++.
T Consensus       123 GY~l~~~~--~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  123 GYKLLFNR--MMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-DI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHhh--cccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-cH------HHHHHHHHhhHHHHHHHhhc
Confidence               11222  0100000000  011355677777777777777777764 21      67778888877777777653

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.92  E-value=0.3  Score=39.66  Aligned_cols=96  Identities=17%  Similarity=0.124  Sum_probs=67.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCc-ccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC-CCccc---cCCCCC
Q 039376          111 EHPQLRRALVRKDWKEVERFISENPDTL-YAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP-LDLEE---TDTSGG  185 (289)
Q Consensus       111 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~-~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g-~~~~~---~~~~g~  185 (289)
                      -++++-+|+..+..+++.+||....-.- +...-..+.--+-|+.+... .+..+++++++.  | +++|.   +-..|.
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~-a~~kvL~~Fi~~--Glv~vN~~F~~~NSGd  255 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHS-ASYKVLEYFINR--GLVDVNKKFQKVNSGD  255 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcC-CcHHHHHHHHhc--cccccchhhhccCCcc
Confidence            4678999999999999999987532100 00001223333455554322 337899999998  5 45544   356899


Q ss_pred             CHHHHHHHhCCHHHHHHHHHcCCC
Q 039376          186 TPLTSAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       186 t~L~~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      |.|..|...++.+++.+|+++|+.
T Consensus       256 tMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  256 TMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHHhHHhcCcHHHHHHHHHcCcc
Confidence            999999999999999999999985

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.07  E-value=0.24  Score=33.13  Aligned_cols=47  Identities=9%  Similarity=0.197  Sum_probs=32.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhc
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM  171 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~  171 (289)
                      .-+..|+..|+.++++.+++..         ......+..|+...+   -++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~---------~~~~~~l~~AI~~H~---n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN---------KPDNDCLEYAIKSHN---NEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh---------ccHHHHHHHHHHHhh---HHHHHHHHHh
Confidence            3567788888888888777642         111445777887777   7888888776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.62  E-value=1.8  Score=34.15  Aligned_cols=116  Identities=13%  Similarity=0.003  Sum_probs=76.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA  191 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A  191 (289)
                      ...|..|++.+.+.+++..-+. ...   . -...++.+-.||+..+   .++|+|+-..     +...  +-.+.+..|
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~-L~~---~-~~~~q~LFElAC~~qk---ydiV~WI~qn-----L~i~--~~~~iFdIA  111 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKED-LEN---E-RYLNQELFELACEEQK---YDIVKWIGQN-----LHIY--NPEDIFDIA  111 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHH-hhc---c-hhHHHHHHHHHHHHcc---ccHHHHHhhc-----cCCC--Cchhhhhhh
Confidence            3567789999999988876442 111   0 2456788899999999   9999999554     2221  223566778


Q ss_pred             HHhCCHHHH----HHHHHcCCCCCCCCCCCC----CCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          192 AIVGNTKAA----KILVKYNKNLPNMRNRIG----QCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       192 ~~~g~~~~v----~~Ll~~g~~i~~~~~~~g----~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      ....+.++.    .+++.+...   ..+.+-    ..-|..|+..|-...+.-.+++|.+++
T Consensus       112 ~~~kDlsLyslGY~l~~~~~~~---~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~  170 (192)
T PF03158_consen  112 FAKKDLSLYSLGYKLLFNRMMS---EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD  170 (192)
T ss_pred             hhccchhHHHHHHHHHHhhccc---ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            877777652    233333211   101100    124789999999999999999999987

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.63  E-value=1.1  Score=29.99  Aligned_cols=47  Identities=13%  Similarity=0.063  Sum_probs=25.0

Q ss_pred             hHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc
Q 039376          148 TLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY  206 (289)
Q Consensus       148 t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  206 (289)
                      ..+..|+.+|+   .|+++.+++.  + .++      ...+..|+..-+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN---~eII~~c~~~--~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGN---FEIINICLKK--N-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCC---HHHHHHHHHH--h-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34556666666   6666666543  1 111      2345556666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-07
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		4e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		8e-04

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   D SG TPL  AAI G+ +  ++L+K+  ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEILIEF 271
            +++G  P+H AA  GH E VE LL +   V   D++       A + G L+++E+L+++
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 272 N 272
Sbjct: 136 G 136

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   D +G TPL  AA  G+ +  ++L+K   ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEILIE 270
           ++ +G  P+H AAR GH E VE LL +   V   DSH       A + G L+++E+L++
Sbjct: 76  KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   D  G TPL  AA +G+ +  ++L+K+  ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECG-LKLLEILIE 270
           R+  G  P+H AA +GH E VE LL     V  +D++       A + G L+++E+L++
Sbjct: 76  RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
            +E    L  +  N N+D    LL+   D+ +      +D+ G TPL  AA  G+ +  K
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADVNA------SDSDGKTPLHLAAENGHKEVVK 54
Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           +L+    + PN ++  G+ P+H AA +GH+E V+ LLS
Sbjct: 55  LLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLS 91

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+  TD  G TPL  AA  G+ +  ++L+KY  ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYS--NPFAGECGLKLLEILIEF 271
            +  G  P+H AA +GH E VE LL          +E ++  +  A +  L+++E+L+++
Sbjct: 76  WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 272 N 272
Sbjct: 136 G 136

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   DT G TPL  AA VG+ +  ++L+K   ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECG-LKLLEILIEF 271
            +  G  P+H AA+ GH E VE LL     V  +D+        A + G L+++E+L+++
Sbjct: 76  LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 272 N 272
Sbjct: 136 G 136

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           TPL  AA +G+T   K+L++ N N PN+    G  P+H AAR GH ETV  LL
Sbjct: 82  TPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALL 133

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+  TD SG TPL  AA  G+ +  ++L+K+  ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
            + +G  P+H AA  GH E VE LL
Sbjct: 76  IDIMGSTPLHLAALIGHLEIVEVLL 100

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   D  G TPL      G+ +  ++L+KY  ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNP--FAGECG-LKLLEILIE 270
            ++ G  P+H AA  GH E VE LL          ++ Y+ P   A E G L+++E+L++
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT-PLHLAAEDGHLEIVEVLLK 134
Query: 271 FN 272
           + 
Sbjct: 135 YG 136

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D++  D  G TPL  AA+ G+ +  ++L+KY  ++ N  +  G  P+H AA  GH E VE
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVE 130
Query: 236 YLL 238
            LL
Sbjct: 131 VLL 133

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+  TD SG TPL  AA  G+ +  ++L+K+  ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
            +  G  P+H AA  GH E VE LL
Sbjct: 76  IDIXGSTPLHLAALIGHLEIVEVLL 100

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   DT+G TPL  AA +G+ +  ++L+KY  ++ N ++  G  P++ AA  GH E VE
Sbjct: 60  DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVE 118
Query: 236 YLL 238
            LL
Sbjct: 119 VLL 121

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 166 DEFLDMI-SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC 224
           D   D+I +  D+  +D+ G TPL  AA  G+ +  K+L+    ++ N ++  G+ P+H 
Sbjct: 18  DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHH 76
Query: 225 AARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECGLK-LLEILI 269
           AA +GH+E V+ L+S    V  +DS  +     A E G K ++++LI
Sbjct: 77  AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
            +E    L  +  N N+D    LL+   D  +      +D+ G TPL  AA  G+ +  K
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADPNA------SDSDGRTPLHYAAENGHKEIVK 54
Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           +L+    + PN ++  G+ P+H AA +GH+E V+ LLS
Sbjct: 55  LLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 91

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 166 DEFLDMI-SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC 224
           D   D+I +  D+  +D+ G TPL  AA  G+ +  K+L+    ++ N ++  G+ P+H 
Sbjct: 18  DRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHY 76
Query: 225 AARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECGLK-LLEILI 269
           AA+ GH+E V+ L+S    V  +DS  +    +A + G K ++++LI
Sbjct: 77  AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   D  G TPL  AA +G+ +  ++L+KY  ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
            +  G  P+H AA  GH E VE LL
Sbjct: 76  EDNFGITPLHLAAIRGHLEIVEVLL 100

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
           M +  D+   D +G TPL  AA  G+ +  ++L+K+  ++ N R+  G+ P+H AA  GH
Sbjct: 34  MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGRTPLHLAATVGH 92
Query: 231 RETVEYLL 238
            E VE LL
Sbjct: 93  LEIVEVLL 100

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+  +D +G TPL  AA  G+ +  ++L+K+  ++ N  +  G  P+H AA+ GH E VE
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 236 YLL 238
            LL
Sbjct: 131 VLL 133

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
           F +  G      A   +D+  R+L     M +  D+  TD +G TPL  AA  G  +  +
Sbjct: 2   FGQDLGKKLLEAAAAGQDDEVRIL-----MANGADVNATDDNGLTPLHLAAANGQLEIVE 56
Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           +L+K   ++ N  +  G  P+H AA  GH E VE LL
Sbjct: 57  VLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVLL 92

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
           M +  D+   D  G TPL  AA  G+ +  ++L+K   ++ N  + +G  P+H AA  GH
Sbjct: 34  MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGH 92
Query: 231 RETVEYLLSVTGVEEEDSHEKYSNPF---AGECGLKLLEILIEF 271
            E VE LL   G +     +    P    A    L+++E+L+++
Sbjct: 93  LEIVEVLLK-NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TPL  AA  G+ +  ++L+K   ++ N +++ G  P+H AAR GH E VE
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVE 118
Query: 236 YLL 238
            LL
Sbjct: 119 VLL 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TPL  AA  G+ +  ++L+K   ++ N +++ G  P+H AAR GH E VE
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVE 118
Query: 236 YLL 238
            LL
Sbjct: 119 VLL 121

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   D +G TPL  AA  G+ +  ++L+K+  ++ + 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGECG-LKLLEILIE 270
            +  G  P+H AA  GH E VE LL +   V   DS        A + G L+++E+L++
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 160 EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ 219
           E H  + E L + +  D+   D  G TPL  AA  G+ +  ++L+K   ++ N +++ G 
Sbjct: 57  EGHLEIVEVL-LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGY 114
Query: 220 CPIHCAARSGHRETVEYLL 238
            P+H AAR GH E VE LL
Sbjct: 115 TPLHLAAREGHLEIVEVLL 133

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA  G+ +  K+L++   ++ N +++ G+ P+H AAR+GH E V+
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 85
Query: 236 YLLSVTG-VEEEDSHEKYSNPFAGECG-LKLLEILIE 270
            LL     V  +D + +     A   G L+++++L+E
Sbjct: 86  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA  G+ +  K+L++   ++ N +++ G+ P+H AAR+GH E V+
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 85
Query: 236 YLL 238
            LL
Sbjct: 86  LLL 88

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA+ G+ +  ++L+K   ++ N  +  G  P+H AA  GH E VE
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVE 130
Query: 236 YLL 238
            LL
Sbjct: 131 VLL 133

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TPL  AA++G+ +  ++L+K   ++ N     G+ P+H AA + H E VE
Sbjct: 39  DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV-NATGNTGRTPLHLAAWADHLEIVE 97
Query: 236 YLL 238
            LL
Sbjct: 98  VLL 100

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
           M +  D+   D  G TPL  AA   + +  ++L+K+  ++ N  +  G  P+H AA  GH
Sbjct: 34  MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGH 92
Query: 231 RETVEYLL 238
            E VE LL
Sbjct: 93  LEIVEVLL 100

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
           DTSG +P+  AA  G     K+LV++  ++ N+ +  G  PIH A + GH   V +L + 
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA- 128
Query: 241 TGVEEEDSHEK 251
               E D H +
Sbjct: 129 ----ESDLHRR 135

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
           DTSG +P+  AA  G     K+LV++  ++ N+ +  G  PIH A + GH   V +L + 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA- 122
Query: 241 TGVEEEDSHEKYSNPFAGECGLKLLEILIE 270
               E D H + +       GL  LE+ ++
Sbjct: 123 ----ESDLHRRDAR------GLTPLELALQ 142

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 114 QLRRALVRKDWKEVERFISE---NPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLD 170
           +L  A  R D +EV R +     +PD L  +F +   T    M   +   A  LL +   
Sbjct: 13  RLSGAAARGDVQEVRRLLHRELVHPDALN-RFGK---TALQVMMFGSPAVALELLKQG-- 66
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
             SP      D SG +P+  AA  G     K+LV++  ++ N  +  G  PIH A R GH
Sbjct: 67  -ASP---NVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGH 121
Query: 231 RETVEYLLSVTGVEEEDSHEK 251
              V +L       E D H +
Sbjct: 122 SSVVSFL-----APESDLHHR 137

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 114 QLRRALVRKDWKEVERFISE---NPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLD 170
           +L  A  R D +EV R +     +PD L  +F +   T    M   +   A  LL +   
Sbjct: 11  RLSGAAARGDVQEVRRLLHRELVHPDALN-RFGK---TALQVMMFGSPAVALELLKQG-- 64
Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
             SP      D SG +P+  AA  G     K+LV++  ++ N  +  G  PIH A R GH
Sbjct: 65  -ASP---NVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGH 119
Query: 231 RETVEYLLSVTGVEEEDSHEK 251
              V +L       E D H +
Sbjct: 120 SSVVSFL-----APESDLHHR 135

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A   +D+  R+L     M +  D+   D  G TPL  AA+  + +  ++L+K   ++ N 
Sbjct: 22  ARAGQDDEVRIL-----MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV-NA 75
Query: 214 RNRIGQCPIHCAARSGHRETVEYLL 238
            + IG+ P+H  A  GH E VE LL
Sbjct: 76  IDAIGETPLHLVAMYGHLEIVEVLL 100

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           G TPL +AA  G+ +  K L+    ++ N R++ G  P+H AA++GH E V+ LL+
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	3e-08
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
2etb_A	256	Transient receptor potential cation channel subfam	8e-09
2etb_A	256	Transient receptor potential cation channel subfam	5e-08
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	3e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-05

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   D     PL  AA VG+ K  ++L    K+  N +++ G  P+  A   GH +   
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191

Query: 236 YLLSVTG--VEEEDSHEK 251
            L+   G   +  D+   
Sbjct: 192 LLVEKYGAEYDLVDNKGA 209

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRET 233
            L + D  G  PL  +      +    L+    N NL +  +  G  P H A   G+ E 
Sbjct: 28  LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV 87

Query: 234 VEYLLS 239
           V+ L  
Sbjct: 88  VKSLYD 93

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           DL +    G T L  A      + ++ L++   +   ++++  Q P+H AA  G  + +E
Sbjct: 99  DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIE 157

Query: 236 YLLS 239
            L  
Sbjct: 158 LLCG 161

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL-PNMRNRIGQCPIHCAARSGHRETVEY 236
           +  D SG TP   A  VGN +  K L         N     G   +H A      E  ++
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125

Query: 237 LLS 239
           L+ 
Sbjct: 126 LIE 128

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.4 bits (114), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   D  G TPL  A   G+  AA +LV+      ++ +  G      A    + +  +
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKK 222

Query: 236 YLLS 239
           + L+
Sbjct: 223 FFLN 226

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
               ++    TPL  AA  G+T+ AK L++      N + +  Q P+HCAAR GH   V+
Sbjct: 39  SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVK 97

Query: 236 YLLS 239
            LL 
Sbjct: 98  LLLE 101

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
                  +G TPL  AA     + A+ L++Y  +  N  +  G  P+H AA+ GH E V 
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVA 262

Query: 236 YLLS 239
            LLS
Sbjct: 263 LLLS 266

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +        TPL  AA +G+T   K+L++ N N PN+    G  P+H AAR GH ETV 
Sbjct: 72  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVL 130

Query: 236 YLLS 239
            LL 
Sbjct: 131 ALLE 134

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            ++ T   G TPL  A+  GN K  K L+++  +  N + ++G  P+H AA+ GH + V 
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVT 361

Query: 236 YLLS 239
            LL 
Sbjct: 362 LLLK 365

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
                  SG TPL  A+ +G+    K L++   + PN+ N   + P+H AAR+GH E  +
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAK 64

Query: 236 YLLS 239
           YLL 
Sbjct: 65  YLLQ 68

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           +    + SG TPL   A  G+   A +L+K+     +   R+G  P+H A+  G+ + V+
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVK 328

Query: 236 YLLS 239
           +LL 
Sbjct: 329 FLLQ 332

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
                   G TPL  AA  G  + A++L++ + + PN   + G  P+H A    + + V+
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVK 196

Query: 236 YLLS 239
            LL 
Sbjct: 197 LLLP 200

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+      G +PL  AA  G+T    +L+K   + PN  +  G  P+  A R G+    +
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTD 394

Query: 236 YLLSVT 241
            L  VT
Sbjct: 395 VLKVVT 400

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
                   G TPL  AA  G+ +   +L+    N  N+ N+ G  P+H  A+ GH    +
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVAD 295

Query: 236 YLLS 239
            L+ 
Sbjct: 296 VLIK 299

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           +     T+G TPL  AA  G+ +    L++   +      + G  P+H AA+ G     E
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAE 163

Query: 236 YLLS 239
            LL 
Sbjct: 164 LLLE 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
               +   A  G     K  ++   NL N  +  G  P+  A+  G  ETV +LL 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.0 bits (152), Expect = 6e-12
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D         + L+ A+  G T    +L++ + +  N+ +  G  P+  A R  H + VE
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 236 YLLS 239
            LL+
Sbjct: 120 ALLA 123

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.3 bits (150), Expect = 9e-12
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +GGTPL  A    + K  + L+    +        G  P+  A   G+R+  +
Sbjct: 94  DINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQ 152

Query: 236 YLLS 239
            + +
Sbjct: 153 VIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           + D  G TPL  A+  G  +  + L+++  + P++  +  +  +  A+  G+ + V  LL
Sbjct: 31  KPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLL 89

Query: 239 S 239
            
Sbjct: 90  E 90

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 3e-12
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+      G TPL  AA  G+ +  K+L+    +  N R++ G  P H A ++GH E V+
Sbjct: 34  DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVK 92

Query: 236 YLLSV 240
            L + 
Sbjct: 93  LLDAK 97

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.1 bits (134), Expect = 5e-10
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
              G TPL +AA  G+ +  K L+    +  N R++ G  P+H AA++GH E V+ LL+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 61.6 bits (151), Expect = 3e-12
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA  G+ +  K+L++   ++ N +++ G+ P+H AAR+GH E V+
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 118

Query: 236 YLLSV 240
            LL  
Sbjct: 119 LLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA  G+ +  K+L++   ++ N +++ G+ P+H AAR+GH E V+
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 85

Query: 236 YLLSV 240
            LL  
Sbjct: 86  LLLEA 90

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.5 bits (130), Expect = 2e-09
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
           +G TPL  AA  G+ +  K+L++   +  N +++ G+ P+H AAR+GH E V+ LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.7 bits (151), Expect = 3e-12
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +     S    L +AA  G  +  + L++   + PN  NR G+ PI      G  +  E
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAE 61

Query: 236 YLLS 239
            LL 
Sbjct: 62  LLLL 65

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.0 bits (144), Expect = 3e-11
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 176 DLEETDTSGGT-PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           +    D +  T P+  AA  G      +L +      ++ +  G+ P+  A   GHR+  
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIA 127

Query: 235 EYLLS 239
            YL +
Sbjct: 128 RYLHA 132

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.1 bits (147), Expect = 4e-12
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA  G+ +  K+L++   +  N +++ G+ P+H AAR+GH E V+
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVK 85

Query: 236 YLLSV 240
            LL  
Sbjct: 86  LLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.1 bits (134), Expect = 3e-10
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
           +G TPL  AA  G+ +  K+L++   +  N +++ G+ P+H AAR+GH E V+ LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.4 bits (153), Expect = 5e-12
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   +  G  PL  A   G  + A+ LV       ++ N+ G+ P+  A         E
Sbjct: 97  DINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRE 155

Query: 236 YLLSVTG--VEEEDSHEKYSN 254
               + G  +      + +  
Sbjct: 156 RAEKM-GQNLNRIPYKDTFWK 175

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 61.7 bits (151), Expect = 7e-12
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
                  + +    GN  A ++ +   +N  N  +  G  P+H A R G    VE L+ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   +    TPL  AA  G+    + L++Y  +  N  N  G  P+H A   G  +  E
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAE 122

Query: 236 YLLS 239
            L++
Sbjct: 123 DLVA 126

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.4 bits (145), Expect = 5e-11
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           DL + D  G +PL  A   G +   ++L+       N+ NR    P+H AA  GHR+ V+
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQ 89

Query: 236 YLLS 239
            LL 
Sbjct: 90  KLLQ 93

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 5e-12
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G + L  AA V N  AA +L+K   N  +M+N   + P+  AAR G  ET +
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAK 175

Query: 236 YLLS 239
            LL 
Sbjct: 176 VLLD 179

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.1 bits (147), Expect = 5e-11
 Identities = 17/64 (26%), Positives = 26/64 (40%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D    D  G TPL +A         +IL++      + R   G  P+  AAR      +E
Sbjct: 50  DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109

Query: 236 YLLS 239
            L++
Sbjct: 110 DLIN 113

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 7e-11
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           DL+     G TPL  AA +      + L+  + +  N  + +G+  +H AA   + +   
Sbjct: 84  DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAV 142

Query: 236 YLLS 239
            LL 
Sbjct: 143 VLLK 146

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           +TD +G T L  AA    + AAK L++ + +  N+++ +G+ P+H A  +  +   + L+
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILI 78

Query: 239 S 239
            
Sbjct: 79  R 79

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.0 bits (139), Expect = 5e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           + +  +    TPL  AA  G+ + AK+L+ +  N  ++ + + + P   A    H + V 
Sbjct: 150 NKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVR 208

Query: 236 YLLS 239
            L  
Sbjct: 209 LLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 195 GNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
                    +    +L N  +R G+  +H AAR    +  + LL 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE 46

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 169 LDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS 228
             +I    + E   S   PL  AA  GN    +  +       N  ++ G   ++ A   
Sbjct: 58  TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHG 116

Query: 229 GHRETVEYLLSVTGVE 244
           GH++ VE L +   +E
Sbjct: 117 GHKDIVEMLFTQPNIE 132

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           +L + +  G T L +AA  G     ++L+       ++RN   +     A  +     ++
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLK 190

Query: 236 YLLSVTGVEEEDSHEKYSN 254
                  V    + E Y +
Sbjct: 191 KKQGTDAVRTLSNAEDYLD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   D +G T L  A   G+    ++L        N +N++G   +H AA  G+ + V+
Sbjct: 98  GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157

Query: 236 YLLS 239
            LL+
Sbjct: 158 LLLA 161

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 6/67 (8%), Positives = 12/67 (17%), Gaps = 3/67 (4%)

Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
           M  P    +    G   +  A      +    L     +       +           G 
Sbjct: 1   MSKPPP--KPVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGR 57

Query: 231 RETVEYL 237
              +   
Sbjct: 58  TGLIPSN 64

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           L+  ++D      +  AA  G T   + L++   + P ++NR G   +H A + G  +T 
Sbjct: 11  LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTA 69

Query: 235 EYLLS 239
           +YL S
Sbjct: 70  KYLAS 74

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL----PNMRNRIGQCPIHCAARSGHR 231
                D +  TPL  A    N +A  +++    +      +  N+ G   +H A      
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224

Query: 232 ETVEYLLS 239
           +     + 
Sbjct: 225 DVAMRFVE 232

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            L+  +  G + L  A ++     A   V+   +  NM +     P++ + R+      +
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTK 261

Query: 236 YLLS 239
            LL 
Sbjct: 262 ELLQ 265

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
                +  G T L  A   G    AK L    +   ++ +  GQ PIH A  +   + V 
Sbjct: 45  SPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV-HSLWH--GQKPIHLAVMANKTDLVV 101

Query: 236 YLLS 239
            L+ 
Sbjct: 102 ALVE 105

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 12/76 (15%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL------------PNMRNRIGQCPIH 223
           D+   D     PL  +         K L++                       +    + 
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295

Query: 224 CAARSGHRETVEYLLS 239
            AA    +E ++ L  
Sbjct: 296 AAADPSKQEVLQLLQE 311

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 175 LDLEETDTSGGTPLTSAAIVGN--TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232
           +        G T L     +G    +  KILV+   + P  +++  + P+  A    +RE
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNRE 187

Query: 233 TVEYLLS 239
            ++ ++ 
Sbjct: 188 ALDLMMD 194

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 5/64 (7%), Positives = 15/64 (23%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +          + +AA     +  ++L +    +       G        +        
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 236 YLLS 239
             L+
Sbjct: 341 MKLA 344

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 177 LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSG--HRETV 234
           +E     G  P +        +  +I         ++++  GQ  +H     G  + E +
Sbjct: 104 VEGAKERGQMPESLLNECDEREVNEIGS-------HVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 235 EYLLS 239
           + L+ 
Sbjct: 157 KILVQ 161

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 15/93 (16%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
              G  P+  A +   T     LV+  K         GQ P         RE  E     
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEGAKE-------RGQMPESLLNECDEREVNEI---- 129

Query: 241 TGVEEEDSHEKYSNPFAGECGLKLLEI---LIE 270
            G   +    + +  +    G + LE+   L++
Sbjct: 130 -GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 203 LVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           +  + K      +      IH AAR G  + V  L+ 
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIE 41

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.6 bits (151), Expect = 6e-12
 Identities = 18/64 (28%), Positives = 26/64 (40%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G  PL  AA  G+ +  + LVK+  +    RN  G      A   G  E V 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154

Query: 236 YLLS 239
            + +
Sbjct: 155 LMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.9 bits (144), Expect = 5e-11
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           + +  D +G   +  AA  G     + L+++  +  N+ +  G  P+H AA+ GH   VE
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 236 YLLS 239
           +L+ 
Sbjct: 121 FLVK 124

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 58.5 bits (143), Expect = 7e-11
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           ++   +  G T L    + GN + A+ L+    N P++++R G   IH AAR+G  +T++
Sbjct: 30  NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQ 87

Query: 236 YLLS 239
            LL 
Sbjct: 88  TLLE 91

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            G  L SAA  G+ +    L++ N N  N +N  G+  +      G+ E    LL 
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLL 58

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 60.9 bits (149), Expect = 6e-12
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +  T     +PL  AA  G+    K+L+ Y  +  N  N  G  P+        +  + 
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLL 126

Query: 236 YLLS 239
               
Sbjct: 127 LPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D    D +G TPL  A   G+ K  ++L+++   + N        P+H AA++GH + V+
Sbjct: 35  DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAKNGHVDIVK 93

Query: 236 YLLS 239
            LLS
Sbjct: 94  LLLS 97

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.8 bits (141), Expect = 7e-11
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           T+  G T L  A+I G+  + + L++   + PN+++  G  P+H A   GH + VE LL 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.3 bits (155), Expect = 6e-12
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G + L  AA V N  AA +L+K   N  +M+N   + P+  AAR G  ET +
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAK 207

Query: 236 YLLS 239
            LL 
Sbjct: 208 VLLD 211

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.8 bits (146), Expect = 9e-11
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           +TD +G T L  AA    + AAK L++ + +  N+++ +G+ P+H A  +  +   + L+
Sbjct: 52  QTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILI 110

Query: 239 S 239
            
Sbjct: 111 R 111

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 17/64 (26%), Positives = 26/64 (40%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D    D  G TPL +A         +IL++      + R   G  P+  AAR      +E
Sbjct: 82  DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141

Query: 236 YLLS 239
            L++
Sbjct: 142 DLIN 145

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 8e-10
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           DL+     G TPL  AA +      + L+  + +  N  + +G+  +H AA   + +   
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAV 174

Query: 236 YLLS 239
            LL 
Sbjct: 175 VLLK 178

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 8e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           + +  +    TPL  AA  G+ + AK+L+ +  N  ++ + + + P   A    H + V 
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVR 240

Query: 236 YLLS 239
            L  
Sbjct: 241 LLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 9e-10
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 175 LDLEETDTSGGTPLTSAAIVGNTKA-------------AKILVKYNKNLPNMRNRIGQCP 221
           +D+      G TPL  A+  G                     +    +L N  +R G+  
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 222 IHCAARSGHRETVEYLLS 239
           +H AAR    +  + LL 
Sbjct: 61  LHLAARYSRSDAAKRLLE 78

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +        +PL  A + G+    KIL+K+     N        P+  A  SG  + V 
Sbjct: 84  AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVN 142

Query: 236 YLLS 239
            LL 
Sbjct: 143 LLLQ 146

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRET 233
           +++   +  GTPL  A         K L++   + N    + +    P+H   R+   E 
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLESGADVN----QGKGQDSPLHAVVRTASEEL 237

Query: 234 VEYLLS 239
              L+ 
Sbjct: 238 ACLLMD 243

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           + ++   +P+  AA  G+ +    L+ Y  N  + +      P++ A  +  R  V+ LL
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLL 210

Query: 239 S 239
            
Sbjct: 211 E 211

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.5 bits (140), Expect = 8e-10
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +        TPL +A + G+     +L+++  +     +     PIH AAR GH E V 
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPESD-LASPIHEAARRGHVECVN 174

Query: 236 YLLSVTG--VEEEDSH 249
            L++  G  ++ + SH
Sbjct: 175 SLIAY-GGNIDHKISH 189

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
                  +PL +     + + A +L+ +  +    +N  G+ P+             +L 
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPESP-LAQLFLE 274

Query: 239 S 239
            
Sbjct: 275 R 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 172 ISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR 231
           ++ +D ++    G  P       G    +  L+    +           P+H AA  GH+
Sbjct: 21  MASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--------DWSPMHEAAIHGHQ 72

Query: 232 ETVEYLLS 239
            ++  L+S
Sbjct: 73  LSLRNLIS 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+  T   G  PL  AA  G  +  + L+    +  N  ++    P+  A   GH   V+
Sbjct: 32  DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVK 90

Query: 236 YLLSV 240
            LLS 
Sbjct: 91  LLLSK 95

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.1 bits (134), Expect = 5e-10
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG- 242
                  A   G+    K  V   ++  N     G+ P+H AA  G  E +E+LL   G 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK-GA 64

Query: 243 -VEEEDSH 249
            +   D H
Sbjct: 65  DINAPDKH 72

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.1 bits (121), Expect = 4e-08
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D    TPL SA   G+    K+L+    +   ++   G            +  ++
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIKALLQ 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   ++   +P   A   G T+    ++K+     N  NR G   +  AA  GH + V+
Sbjct: 64  DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 236 YLLSVTG--VEEED 247
            LL      ++ ++
Sbjct: 124 LLLEDGREDIDFQN 137

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            ++E DT G TPL  A    + + AK L+    +  N++N I   P   A   G  E + 
Sbjct: 31  QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQGRTEILA 89

Query: 236 YLLS 239
           Y+L 
Sbjct: 90  YMLK 93

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.1 bits (139), Expect = 4e-10
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
               G  L +A      K  +IL        +  +  G  P++ A  +   E  + L+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 241 TG--VEEEDSHEKYSNP--FAGECG-LKLLEILIE 270
            G  +  ++S     +P  +AG  G  ++L  +++
Sbjct: 62  -GADINLQNSISD--SPYLYAGAQGRTEILAYMLK 93

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA-----RSGH 230
           DL + +  GG  L  AA  G+    K+L++  +   + +N  G   +  A         +
Sbjct: 98  DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157

Query: 231 RETVEYLLSVTG--VEEEDSHEKYSNP--FAGECG-LKLLEILIEFN 272
           ++ V+ L+   G     +D+  +      +A + G  ++ +IL ++N
Sbjct: 158 QDIVKLLMEN-GADQSIKDNSGR--TAMDYANQKGYTEISKILAQYN 201

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+ E D +GGTPL  A    + K  K+L++   + P +    G   +  A   G+R   +
Sbjct: 94  DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQ 152

Query: 236 YLLS 239
            + S
Sbjct: 153 VIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +  TD  G TPL  AA  G     + L++   + P +  +  +  +  A   G+ + V+
Sbjct: 28  VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVK 86

Query: 236 YLLS 239
            LL 
Sbjct: 87  MLLD 90

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D +       + L+ A   G T   K+L+    +  N  +  G  P+  A    H + V+
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVK 119

Query: 236 YLLS 239
            LL 
Sbjct: 120 MLLE 123

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 56.2 bits (137), Expect = 5e-10
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           +    +   A  G        ++    + N  +  G  P+  AA  G    VE+LL 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 122 KDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP-LDLEET 180
           +  K        +              L  +  + NE++   LL          ++   +
Sbjct: 2   EFGKSALDLADPSAK-AVLTGEYKKDELLEAARSGNEEKLMALL------TPLNVNCHAS 54

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           D    TPL  AA     +  ++L+++  +  + +++ G  P+H A   GH E  E LL 
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLK 112

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.1 bits (152), Expect = 3e-11
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           ++ E +    TPL  AA   +    ++L K+     N  + +GQ  +H AA +GH +T  
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCR 297

Query: 236 YLLS 239
            LLS
Sbjct: 298 LLLS 301

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G  PL +A   G+ +  ++L+K+   + N  +     P+H AA     E   
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCS 141

Query: 236 YLLS 239
            LLS
Sbjct: 142 LLLS 145

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 3e-10
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   D    TPL  AA     +   +L+ +  + P + N  G+  +  A     RE + 
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLT 174

Query: 236 YLLS 239
           Y   
Sbjct: 175 YEFK 178

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   D+ G T L  AA+ G+ +  ++L+ Y  + P++ +  G             E V+
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGN-----EAVQ 325

Query: 236 YLLS 239
            +LS
Sbjct: 326 QILS 329

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.9 bits (110), Expect = 5e-06
 Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 23/87 (26%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL--------------------PNMRN 215
           D    +  G + +  A      +      K +  L                       + 
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208

Query: 216 RIGQCPIHCAARSGHR---ETVEYLLS 239
           +  +  +HCA  S H    +  E LL 
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLR 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           +L+  +    TPL  A I       ++LV    + P   +R GQ   H A        + 
Sbjct: 38  ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLR 96

Query: 236 YLLSVTGVEEEDSHEK 251
            LL        D   +
Sbjct: 97  ALLDSAAPGTLDLEAR 112

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           ++     SG + L SA+  G     + LV+   +  +++N     P+  A      + + 
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR 233

Query: 236 YLLS 239
              +
Sbjct: 234 GKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL---PNMRNRIGQCPIHCAARSGHRETVE 235
             D  G TPL  A + GN  A   LV   +      ++ N + Q P+H A  +     V 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 236 YLLS 239
            L++
Sbjct: 64  LLVT 67

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.1 bits (139), Expect = 7e-10
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 173 SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGH 230
             LDLE  +  G T L  A      +  ++L++   + +  ++++  G+ P+  A  +  
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS--GRSPLIHAVENNS 162

Query: 231 RETVEYLLS 239
              V+ LL 
Sbjct: 163 LSMVQLLLQ 171

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 176 DLEETDT-SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           D++  D  SG +PL  A    +    ++L+++  N+ N +   G   +H A+  G    V
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLV 199

Query: 235 EYLLS 239
             L+ 
Sbjct: 200 RTLVR 204

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
                DTSG +P+  AA  G     K+LV++  +  N+ +  G  PIH A + GH   V 
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 236 YLLSVTGVEEEDSH 249
           +L + + +   D+ 
Sbjct: 119 FLAAESDLHRRDAR 132

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G  P+  A   G+T     L     +  + R+  G  P+  A + G ++ V+
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESD-LHRRDARGLTPLELALQRGAQDLVD 150

Query: 236 YLLS 239
            L  
Sbjct: 151 ILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            G  L+ AA  G+ +  + L+      P+  NR G+  +      G       LL 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLK 56

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            ++  D  G T L  AA  G+ +  + L+   +   N ++  G  P+  A    H + V+
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128

Query: 236 YLLS 239
            LLS
Sbjct: 129 LLLS 132

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           + +    +  +PL +AA  G+     +LV+   N+ +  +   + P+  AA + H E V+
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVK 61

Query: 236 YLLS 239
           YL+ 
Sbjct: 62  YLIK 65

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.5 bits (148), Expect = 4e-11
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D      L  AA  G    A+IL+    +  +  N  G  P+H AAR    + V 
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVV 194

Query: 236 YLLS 239
             LS
Sbjct: 195 LFLS 198

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.8 bits (141), Expect = 4e-10
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           DL   +  G +PL  AA         + +  + +   ++N+ G+ P+ CA+ +    +  
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSAL 227

Query: 236 YLLS 239
            +  
Sbjct: 228 QMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TP+  A    +    K+L+    +  N+R+      +H AA SG  +  E
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAE 161

Query: 236 YLLS 239
            LL+
Sbjct: 162 ILLA 165

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY---------NKNLPNMRNRIGQCPIHCAA 226
           D+ E D  G T    AA+ G  KA K L K           K       + G   +  AA
Sbjct: 97  DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156

Query: 227 RSGHRETVEYLLSVTG--VEEED 247
             GH E ++ LL   G  V   D
Sbjct: 157 EKGHVEVLKILLDEMGADVNACD 179

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 176 DLEETDTSGG-TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           ++   +  GG TPL +A  +      ++L+++  + P +R + G  P   AA +G  + +
Sbjct: 30  NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLL 88

Query: 235 EYLLS 239
           +  LS
Sbjct: 89  KLFLS 93

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.9 bits (141), Expect = 5e-10
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL------PNMRNRIGQCPIHCAARSG 229
           D+   D  G   L  A +  +    + +      L       N+R   G+ P+  A    
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHL---LLDHGADVNVRGERGKTPLILAVEKK 230

Query: 230 HRETVEYLLSVTG--VEEEDSHEK 251
           H   V+ LL      + + DS  K
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGK 254

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 12/64 (18%), Positives = 22/64 (34%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+      G TPL  A    +    + L++      N  +  G+  +  A     ++  E
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 236 YLLS 239
            L  
Sbjct: 271 LLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.7 bits (125), Expect = 7e-08
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQC-PIHCAARSGHRETVEYLLS 239
                  L  A    +    + L++   N  N +   G   P+H A +    + VE LL 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 176 DLEETDTSGGT-PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           +    D +  T P+  AA  G      +L +      ++R+  G+ P+  A   GHR+  
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVA 127

Query: 235 EYLLS 239
            YL +
Sbjct: 128 RYLRA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 58.3 bits (142), Expect = 7e-11
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ-CPIHCAARSGHRETV 234
           +    ++ G  P+    + G+ + A++L+ +    PN  +      P+H AAR G  +T+
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTL 94

Query: 235 EYLLS 239
             L  
Sbjct: 95  VVLHR 99

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
                  L +AA  G  +  + L++   N PN  N  G+ PI      G     E LL 
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLLL 65

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 6/60 (10%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            L+  D  G  P+  A  +G+   A+ L           N          A  G  +  +
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSN-----HARIDAAEGPSDIPD 156

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G  PL +A   G+ + A++LVK+     N+ +     P+H AA  G  E  +
Sbjct: 67  DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICK 125

Query: 236 YLLS 239
            LL 
Sbjct: 126 LLLQ 129

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 154 ANINEDEAHRLLD----------EFLDMISP--LDLEETDTSGGTPLTSAAIVGNTKAAK 201
           A  N +   +LL+          + L   +   ++  + +    TPL  AA        +
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKL--CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59

Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            L+++  +  + +++ G  P+H A   GH E  E L+ 
Sbjct: 60  YLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVK 96

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.9 bits (136), Expect = 7e-10
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   D    TPL  AA  G  +  K+L+++  + P  +NR G  P+      G  +  +
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQD 157

Query: 236 YLLS 239
            L  
Sbjct: 158 LLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 215 NRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNP--FAGECG-LKLLEILIE 270
           N      +  AA++G  ETV+ L +V  V   D   + S P  FA     + ++E L++
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           ++   D SG TPL  + I G ++ +  L+++  N  N RN  G+ P+  A++ G  E V+
Sbjct: 93  NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVK 151

Query: 236 YLLSV 240
            LL +
Sbjct: 152 KLLEL 156

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.3 bits (145), Expect = 7e-11
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           ++ + +  G TPL  A+  G ++  K L++   +  + R+  G      A   G +E ++
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIK 184

Query: 236 YLLSV 240
               V
Sbjct: 185 IFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
                 D+   TPL  A ++G   A   LV+    L   ++  G   +  A ++      
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIA 84

Query: 235 EYLLSVTG--VEEEDSHEK 251
           E LLS  G  V  +D   K
Sbjct: 85  EKLLSK-GSNVNTKDFSGK 102

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 9e-07
 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 10/73 (13%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
           D +G             +    L        N R+   + P+  A   G    ++ L+  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 241 TG--VEEEDSHEK 251
               +E++D    
Sbjct: 58  -FDKLEDKDIEGS 69

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 177 LEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRETV 234
                  G T L  A I  +      L+ +       +++N +GQ  +H AA  G   TV
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 235 EYLLS 239
           E L +
Sbjct: 62  EKLYA 66

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 173 SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232
               L+  +  G T L  AAI+G     + L         +  R G   +H A R     
Sbjct: 34  GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHT 92

Query: 233 TVEYLLS 239
               LL 
Sbjct: 93  CACVLLQ 99

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D       G TPL SA +  N   A++L  +              P   +      +  +
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSSGSDSDSDNRD 275

Query: 236 YLLS 239
               
Sbjct: 276 EGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 176 DLEETDTSGG-TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           DL + + + G TPL  A         ++L+K   + P  R   G+ P+  A    +    
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILA 241

Query: 235 EYLLS 239
             L +
Sbjct: 242 RLLRA 246

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 10/87 (11%)

Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTK-AAKILVKYNKNLPN 212
            +   D +        D       + T  +   P    +              +   L  
Sbjct: 102 PSHPRDAS--------DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-E 152

Query: 213 MRNRIGQCPIHCAARSGHRETVEYLLS 239
             N  G  P+H A      E V  L  
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRD 179

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D    TPL  A +    +    L+K   + P + N+  +  +H AA +     + 
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMV 216

Query: 236 YLLS 239
           Y+L+
Sbjct: 217 YMLN 220

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 13/86 (15%)

Query: 154 ANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM 213
           A ++ D A                +     G T L  AA V N    K LV    +  + 
Sbjct: 262 AKVDYDGA-------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308

Query: 214 RNRIGQCPIHCAARSGHRETVEYLLS 239
           ++  G+ PI  AA+ G  E V YL+ 
Sbjct: 309 QDEDGKTPIMLAAQEGRIEVVMYLIQ 334

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           + ++ D  G TP+  AA  G  +    L++   +     +         A  + H   V+
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVD 363

Query: 236 YLLS 239
               
Sbjct: 364 IFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 176 DLEETDTSGGTPLTSAAIVGNT---KAAKILVKY-------NKNLPNMRNRIGQCPIHCA 225
           D+EE D +G T L   A         +AK+LV+             +     G+  +H A
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

Query: 226 ARSGHRETVEYLLSVTG--VEEEDSHEK 251
           A+  +   V+YL+   G   +++D   K
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGK 314

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 15/108 (13%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNL-------PNMRNRIGQCPIHCAARSGHRE 232
                 T L   A   + + ++ L+ +            N  +     P+  A  +  R 
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 233 TVEYLLSVTG--VEEEDSHEKYSNP--FAGECG-LKLLEILIEFNFLG 275
            V YL+   G      +  E+  +    A       ++  ++    L 
Sbjct: 181 LVAYLMKA-GADPTIYNKSER--SALHQAAANRDFGMMVYMLNSTKLK 225

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 2/83 (2%)

Query: 157 NEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR 216
                H LL+   D        E       P       GN           +  P     
Sbjct: 34  ITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQI-PTEPEP 92

Query: 217 IGQCPIHCAARSGHRETVEYLLS 239
                +H  A +G     E +  
Sbjct: 93  ESPIKLHTEA-AGSYAITEPITR 114

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 11/96 (11%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
              ++ TS    L  A+  G  K  +  +++              P      +G+    +
Sbjct: 29  KNHQSITSSQHSLLEASYDGYIKRQRNELQHY----------SLYPNPQGYGNGNDFLGD 78

Query: 236 YLLSV-TGVEEEDSHEKYSNPFAGECGLKLLEILIE 270
           +  +      E +                + E +  
Sbjct: 79  FNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITR 114

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.3 bits (147), Expect = 6e-11
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRET 233
           D++  D +G T L   A +G+ K  ++L +   + +  +MR   G   +H AA     E 
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLTALHMAAGYVRPEV 126

Query: 234 VEYLLS 239
           VE L+ 
Sbjct: 127 VEALVE 132

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 176 DLEETDTSGG-TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           DL+  D  GG T L  AA     +  + LV+   +   + +  G   +  A         
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPK 160

Query: 235 EYLLS 239
              + 
Sbjct: 161 GNPMQ 165

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           +  +   TP  +AA   + +A   L++ +++  +  +  G+  +   A  G  + V  L 
Sbjct: 40  DVVSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLA 97

Query: 239 S 239
            
Sbjct: 98  E 98

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 4/71 (5%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
            T   G          G++ +         ++        + P   AAR    + +  LL
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLL 65

Query: 239 SVTGVEEEDSH 249
               V+  D +
Sbjct: 66  EDRDVDAVDEN 76

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 21/85 (24%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRI---------------- 217
           D+E  D  G T L  A  +  T      +++     L  + N +                
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195

Query: 218 ---GQCPIHCAARSGHRETVEYLLS 239
              G+   +        +       
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGV 220

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.5 bits (143), Expect = 8e-11
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D SG TPL  AA  G+ +  ++L+K   +  N  +  G  P+  AA  GH E VE
Sbjct: 39  DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVE 97

Query: 236 YLLS 239
            LL 
Sbjct: 98  VLLK 101

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA+ G+ +  ++L+K   ++ N  +  G  P+H AA  GH E VE
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVE 130

Query: 236 YLLS 239
            LL 
Sbjct: 131 VLLK 134

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            G  L  AA  G     +IL+    ++ N  +  G  P+H AA +GH E VE LL 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLK 68

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 8e-11
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TPL  AA +G+ + A++L+K+  +  N +++ G+     +  +G+ +  E
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAE 130

Query: 236 YLLS 239
            L  
Sbjct: 131 ILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TPL  A   G+ +  ++L+K   ++ N  + IG  P+H AA  GH E  E
Sbjct: 39  DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIGHLEIAE 97

Query: 236 YLLS 239
            LL 
Sbjct: 98  VLLK 101

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            G  L  AA  G     +IL+    ++ N ++  G  P++ A   GH E VE LL 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLK 68

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQC-PIHCAARSGHRETV 234
           D  + D  G T L  A   GN +  K+ VK N        + G     + A        V
Sbjct: 87  DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIV 145

Query: 235 EYLLSVTGVEEEDSHEKYSNP--FAGECG-LKLLEILIE 270
            Y LS      +       +      + G + ++ +L++
Sbjct: 146 SYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLD 182

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.9 bits (141), Expect = 5e-10
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
                +     PL  AA + +TK  KIL+    +  +  +  G   ++ A  SG+ +TV+
Sbjct: 56  LKNLLE--NEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVK 112

Query: 236 YLLS 239
             + 
Sbjct: 113 LFVK 116

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.5 bits (140), Expect = 6e-10
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D  + D  G +    A    N +    L+       N+     + P+H AA     + V+
Sbjct: 23  DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLE--NEFPLHQAATLEDTKIVK 79

Query: 236 YLLS 239
            LL 
Sbjct: 80  ILLF 83

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 179 ETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCP-IHCAARSGHRETVEYL 237
                  + +      G+     +L+ Y  +  N  N +   P I  A  +   E ++ L
Sbjct: 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

Query: 238 LS 239
             
Sbjct: 215 FK 216

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 13/67 (19%)

Query: 176 DLEETDTSGGTP-LTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRE 232
                ++    P +  A    + +  + L KY  N    N                   E
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN----------LENVLLDDAE 235

Query: 233 TVEYLLS 239
             + ++ 
Sbjct: 236 IAKMIIE 242

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           G  L+       +K  K  +  +K+     +  G    + A    +   V  LL+
Sbjct: 1   GMDLSRINT-WKSKQLKSFLS-SKD-TFKADVHGHSASYYAIADNNVRLVCTLLN 52

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 148 TLFHSMANINEDEAHRLLDEFLDMISPL-DLEETDTSGGTPLTSAAIVGNTKAAKILVKY 206
           +  H      E      +   +     L  L   +    TPL  A I    + A+ L+  
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67

Query: 207 NKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
             + P +R+  G  P+H A   G   +V  L  
Sbjct: 68  GCD-PELRDFRGNTPLHLACEQGCLASVGVLTQ 99

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLP-----NMRNRIGQCPIHCAARSGH 230
           D E  D  G TPL  A   G   +  +L +              N  G   +H A+  G+
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 231 RETVEYLLS 239
              VE L+S
Sbjct: 130 LGIVELLVS 138

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKY---NKNLPNMRNRIGQCPIHCAARSGHRETV 234
           ++    G + L  A I         +++    +    N +N + Q P+H A  +   E  
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 235 EYLLS 239
           E LL 
Sbjct: 62  EALLG 66

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.8 bits (138), Expect = 8e-10
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCP 221
           L            L+ T+ +G T L  A+I G     ++LV    + N     N  G+  
Sbjct: 97  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN--GRTA 154

Query: 222 IHCAARSGHRETVEYLLS 239
           +H A    + + V  LL 
Sbjct: 155 LHLAVDLQNPDLVSLLLK 172

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 2/65 (3%)

Query: 176 DLEETD-TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           D+   +  +G T L  A  + N     +L+K   +  N     G  P             
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQ 200

Query: 235 EYLLS 239
           + L  
Sbjct: 201 QQLGQ 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           +      SGGT L  AA  G T+  K+L++   +  N+++  G  P+H AA  G  E   
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACR 249

Query: 236 YLLS 239
            L+ 
Sbjct: 250 ILVE 253

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 116 RRALVRKDW----KEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM 171
           +R    K W     ++E  + +   T   KF +       + ++ + +E  RLL+     
Sbjct: 9   KRNEQLKRWIGSETDLEPPVVKRKKT-KVKFDDGA-VFLAACSSGDTEEVLRLLER---- 62

Query: 172 ISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR 231
               D+   +  G T L  A I  N    K LV+   N  N  +  G  P+H AA  G+ 
Sbjct: 63  --GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYL 119

Query: 232 ETVEYLLS 239
           +  EYL+S
Sbjct: 120 DIAEYLIS 127

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           ++ + D  G  PL +AA  G    A+ L+    ++    N  G  P+  A      E ++
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 236 YLLSVTGV 243
             ++  GV
Sbjct: 157 NEVNRQGV 164

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D  G TPL +AA  G  +A +ILV+   +     N++GQ     A         E
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADEDILGYLEE 282

Query: 236 YLLSVTGVEEEDSHEK 251
                  +  E   +K
Sbjct: 283 LQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 7/64 (10%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            +   ++ G TPL  A      +  +  V                      R   R+  +
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR-------KEEERIMLRDARQ 183

Query: 236 YLLS 239
           +L S
Sbjct: 184 WLNS 187

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            +  G  L  AA  G     +IL+    ++   +++ G  P+H AAR+GH E V+ LL 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE 78

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D +G TPL  AA  G+ +  K+L++   +    +++ G+     +  +G+ +  E
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 236 YL 237
            L
Sbjct: 108 IL 109

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRET 233
           D++  D +G T L   A +G+ K  ++L +   + +  +MR   G   +H AA     E 
Sbjct: 68  DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--GLTALHMAAGYVRPEV 125

Query: 234 VEYLLS 239
           VE L+ 
Sbjct: 126 VEALVE 131

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 176 DLEETDTSGG-TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           DL+  D  GG T L  AA     +  + LV+   +   + +  G   +  A         
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPK 159

Query: 235 EYLLS 239
              + 
Sbjct: 160 GNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 148 TLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYN 207
             +          +                 +  +   TP  +AA   + +A   L++ +
Sbjct: 16  MEYLIEWKDGHSPSWVPSSY--------IAADVVSEYETPWWTAARKADEQALSQLLE-D 66

Query: 208 KNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           ++  +  +  G+  +   A  G  + V  L  
Sbjct: 67  RD-VDAVDENGRTALLFVAGLGSDKCVRLLAE 97

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV 243
           G          G++ +         ++        + P   AAR    + +  LL    V
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLEDRDV 69

Query: 244 EEEDSH 249
           +  D +
Sbjct: 70  DAVDEN 75

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 176 DLEETDTSGG-TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
            +   D     T L  A + GNT    +L++   N+ + +N  G+  +  A +  +   +
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMI 226

Query: 235 EYLLS 239
            +L  
Sbjct: 227 NHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRET 233
           D+ + D    T L  AAI       K  +      +       +   P+H A R GH   
Sbjct: 34  DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG--GDLNSTPLHWATRQGHLSM 91

Query: 234 VEYLLS 239
           V  L+ 
Sbjct: 92  VVQLMK 97

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.8 bits (141), Expect = 4e-10
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 177 LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY 236
           +   D      +  A   G  +  + LV+   +     ++     +H AA +   + V+Y
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 237 LLS 239
            +S
Sbjct: 61  YIS 63

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.1 bits (139), Expect = 8e-10
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 176 DLEETDTSGG-TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
            +++       TPL  A   G+      L+KY  + P++ +  G   IH AA+ GH   V
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIV 125

Query: 235 EYLLSVTG--VEEED 247
            YL++  G  V+  D
Sbjct: 126 AYLIAK-GQDVDMMD 139

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR-ETV 234
           D    D  G + +  AA  G+T     L+   ++  +M ++ G  P+  AA   H  +  
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPT 159

Query: 235 EYLLSVTG--VEEEDSHEKY 252
             LL+     V   D + K 
Sbjct: 160 RLLLTF-NVSVNLGDKYHKN 178

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
             +       TPL  AA  G+    ++L+K+  +  N ++ +    +H A    H+E VE
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVE 117

Query: 236 YLLS 239
            L+ 
Sbjct: 118 LLIK 121

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           TD  G +PL  AA  G+    ++L++   +  + R ++ + P+H AA  GH   VE LL 
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLK 88

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.5 bits (135), Expect = 8e-10
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D+   D    T L  A    + +  ++L+KY  +  + +++  +     +  +G+ +  E
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAE 150

Query: 236 YL 237
            L
Sbjct: 151 IL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 51.6 bits (125), Expect = 2e-08
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKY----NKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            G  L  AA  G     +IL+              + +G  P+H AA+ GH  T E LL 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT------DWLGTSPLHLAAQYGHFSTTEVLLR 55

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY----NKNLPNMRNRIGQCPIHCAARSGHR 231
           ++ +    G T L  AA+  N +AA +L++                GQ  +H A  + + 
Sbjct: 29  EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNV 88

Query: 232 ETVEYLLS 239
             V  LL+
Sbjct: 89  NLVRALLA 96

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 172 ISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKN----------LPNMRNRIGQ 219
           +    +      G T L  A I  N    + L+    + +           P+     G+
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 220 CPIHCAARSGHRETVEYLLS 239
            P+  AA  G  E V  L+ 
Sbjct: 123 HPLSFAACVGSEEIVRLLIE 142

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 154 ANINE-DEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPN 212
           A+++               +           G  PL+ AA VG+ +  ++L+++  +   
Sbjct: 99  ASVSARAT---------GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IR 148

Query: 213 MRNRIGQCPIHCAARSGHRETV----EYLLS 239
            ++ +G   +H      ++         LLS
Sbjct: 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRET 233
           ++   D+ G TPL  AA   N +  K LV+           +             G+ + 
Sbjct: 95  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 234 VEYLLSV 240
            ++L  V
Sbjct: 155 SQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 6/61 (9%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           + +G   L         K     + +          N +    +  ++  G  + V+ ++
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLALLLDSSLEGEFDLVQRII 57

Query: 239 S 239
            
Sbjct: 58  Y 58

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
            ++         L  +++ G     + ++    + P++ N  G   +H A  +GH E V+
Sbjct: 30  RVKFNPL-PLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVK 87

Query: 236 YLLSVTG--VEEEDSHEKYSNP--FAGECG-LKLLEILIE 270
           +L+   G  V   DS      P   A  C  +++ + L+E
Sbjct: 88  FLVQF-GVNVNAADSDGW--TPLHCAASCNNVQVCKFLVE 124

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           D  + +  G T L +A    N      L+    N  N  +  G  P+HCAA         
Sbjct: 46  DPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICM 104

Query: 236 YLLS 239
            L+ 
Sbjct: 105 ALVQ 108

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG 242
           +    L  AA+ G  +  +  VK   + P+  N  G   +H A    +   V++L++  G
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITA-G 77

Query: 243 --VEEEDSHEKYSNP--FAGECG-LKLLEILIE 270
             V   DSH     P   A  C    +   L++
Sbjct: 78  ANVNSPDSHGW--TPLHCAASCNDTVICMALVQ 108

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARS--GHR 231
           ++   D+ G TPL  AA   +T     LV++        + +  G            G+ 
Sbjct: 79  NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD--GATAFEKCDPYREGYA 136

Query: 232 ETVEYLLSV-TGVEEEDSHEKYSNPFAGECGLKLLEILI 269
           +   YL  V   +   +S   Y+           L    
Sbjct: 137 DCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFRE 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 4/70 (5%), Positives = 17/70 (24%), Gaps = 6/70 (8%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL------PNMRNRIGQCPIHCAARSG 229
           D+          +            +++  Y            ++++ G   +    R  
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 230 HRETVEYLLS 239
               ++ +  
Sbjct: 166 KPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 13/137 (9%)

Query: 111 EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLD 170
           E+  +  A +   +++      +  +    K +     + + +   N DEA   +  FL 
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFL- 61

Query: 171 MISP-LDLEETDTSGGTPLTSAA------IVGNTKAAKILVKYNKNLPNMRNRIGQCPIH 223
            I+   D++     G T            I G T+  KI ++   +      +  +  + 
Sbjct: 62  -INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVF 119

Query: 224 CAARSGHRETVEYLLSV 240
               +   +  E +   
Sbjct: 120 KNIFNYFVDENEMIPLY 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 183 SGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           S    +++AA++G  +    L +         +++ I    +         +   +L++
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           L +   ++   + L      G  +    L    +    + N  G  P+  AA+ G  E  
Sbjct: 179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIF 237

Query: 235 EYLLS 239
            ++L 
Sbjct: 238 RHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 15/107 (14%)

Query: 148 TLFHSMANINEDEAHRLLDEFLDMISPL--DLEETDTSGGTPLTSAAIV---GNTKAAKI 202
            LF  ++    +E   LL+        L        ++G T L  A +    G       
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 203 LVKYNKNLP----------NMRNRIGQCPIHCAARSGHRETVEYLLS 239
           L++ +K+                  G   +H A      + V+ L+ 
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 17/102 (16%)

Query: 155 NINEDEAHRLLDEFLDMISPL-----DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--N 207
           +        LL    D  +P         +    G + L  A    + +  K+LV+   +
Sbjct: 56  DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115

Query: 208 KN----------LPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            +                  G+ P+  AA +   + V YLL 
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 148 TLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYN 207
           T  H +A  + D     + +FL + +  +L++    G T L    +  N +  K+L++  
Sbjct: 171 TALH-LAVRSVDRTSLHIVDFL-VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 208 KNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
            +   + N  G+ P+  A R  H    E L 
Sbjct: 229 AS-IEIANESGETPLDIAKRLKHEHCEELLT 258

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 148 TLFHSMANINEDEAHRLLDEFLDMISP-LDLEETDTSGGTPLTSAAIVGNTKAAKILVKY 206
            + +   +   DE    +      ++       TD    T L  A   G+T+  + L++ 
Sbjct: 9   MICNLAYSGKLDELKERI------LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 207 NKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV-TGVEEEDSHEKYSNPFAGECG-LKL 264
                N ++  G  P+H AA +G  E V+ LL     V   + +      +A      ++
Sbjct: 63  GVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121

Query: 265 LEILIE 270
             +L+E
Sbjct: 122 AVMLLE 127

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.6 bits (121), Expect = 9e-08
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 182 TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            S       A      +  + ++          ++  +  +H A  +GH E VE+LL 
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQ 61

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 9/120 (7%)

Query: 120 VRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEE 179
             K+  E+   + E      AK       +  + A  N    H LL              
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY------KASTNI 167

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            DT G TPL  A      + AK LV    ++  + N+  + P+  A   G    +   L+
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAK--GGLGLILKRLA 224

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 5/129 (3%)

Query: 112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHS---MANINEDEAHRLLDEF 168
             +L  A+  +D   V    +   D                   +A    ++A   L +F
Sbjct: 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF 211

Query: 169 LDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS 228
           +   +   L+     G T L  AA+       K+L+K         N  G+  +  A + 
Sbjct: 212 IIQ-NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKK 269

Query: 229 GHRETVEYL 237
            H+E  E L
Sbjct: 270 HHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 6/121 (4%)

Query: 123 DWKEVERFISEN--PDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEET 180
           D      +I           + T     L+ ++ N +            D   PL   + 
Sbjct: 127 DMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDA 186

Query: 181 DTSGGTPLTSAAIVGNTK---AAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL 237
                  L  A  V N         +++   +L + +   G   +H AA     + ++ L
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKLL 245

Query: 238 L 238
           L
Sbjct: 246 L 246

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRET 233
            ++            AA  G+      L +    + +  ++          AA +GH   
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-NYHAFRLAAENGHLHV 178

Query: 234 VEYLLSV 240
           +  L  +
Sbjct: 179 LNRLCEL 185

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLP--------NMRNRIGQCPIHCAARSG 229
           +     G   L +     +       +++  ++P                  +  A R G
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLD-DIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330

Query: 230 HRETVEYLLSVTGVEEE-DSHEKYSNPFAGECGLKLLEILIE 270
           ++     LLS+  V     ++  Y N   G   L L  + +E
Sbjct: 331 NQGACALLLSIPSVLALTKANNYYINETGGR--LDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKY---NKNLPNMRNRIGQCPIHCAARSGHRE 232
           D  +           AAI G + A    +     +  +  +           AA +GH  
Sbjct: 84  DAHKKGIKSEVICFVAAITGCSSALDT-LCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142

Query: 233 TVEYLLSV-TGVEEEDSHEKYSNPF--AGECG-LKLLEILIE 270
            +  L  +           +  + F  A E G L +L  L E
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 12/114 (10%), Positives = 24/114 (21%), Gaps = 12/114 (10%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
                     AA  G+      L +    +    ++          A   GH   + +LL
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219

Query: 239 SVTGVEEEDSHEKYSNPFAGECGL----KLLEILIEFNFLGQYTCNTLSSNMHI 288
                        Y+     E G       +   +             + +   
Sbjct: 220 DC------PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 267

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 145 SCGTLFHSMANINED---EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAK 201
               +  ++   N++   +  R L     + +              L  A  +GN  A  
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
           +L+    ++P++         +     G  +     L
Sbjct: 337 LLL----SIPSVLALTKANNYYINETGGRLDLRAVAL 369

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 15/79 (18%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKIL---------------VKYNKNLPNMRNRIGQC 220
           D+   D+ G T L +   V +                      +     L  + NR G  
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 221 PIHCAARSGHRETVEYLLS 239
           P+  AA SG    + Y+L 
Sbjct: 236 PLALAASSGKIGVLAYILQ 254

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 18/103 (17%)

Query: 155 NINEDEAHRLLDEFLDMISPLDL-----EETDTSGGTPLTSAAIVGNTKAAKILVK---- 205
           N   D    LLD      S          ++   G T L  A    N     +LV+    
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 206 ---------YNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
                    + K         G+ P+  AA +     V++LL 
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 2/84 (2%)

Query: 174 PLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL--PNMRNRIGQCPIHCAARSGHR 231
                     G  PL+ AA        K L++ +      + R+ +G   +H        
Sbjct: 138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADN 197

Query: 232 ETVEYLLSVTGVEEEDSHEKYSNP 255
                    +   E        +P
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHP 221

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 8/56 (14%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR 231
             E T+  G TPL  AA  G       +++   +             H AA   H 
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQREIH--------EPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL------PNMRNR-IGQCPIHCA---AR 227
           +         +  A    N +  + L+ + +           ++   G+  +  A     
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 228 SGHRETVEYLLSV 240
           +G  +T+  LL V
Sbjct: 67  NGQNDTIALLLDV 79

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 176 DLEETDTSGGTPLTSAAIVGN---------TKAAKILVKYNKNL------PNMRNRIGQC 220
           DL   D+ G T L +   + +         TK   +L+     L        + N  G  
Sbjct: 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227

Query: 221 PIHCAARSGHRETVEYLLS 239
           P+  AA++G     ++++ 
Sbjct: 228 PLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 18/103 (17%)

Query: 155 NINEDEAHRLLDEFLDMISPLDL-----EETDTSGGTPLTSAAIVGNTKAAKILVK---- 205
               D    LLD      +  +       +    G T L  A         ++LV+    
Sbjct: 59  AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118

Query: 206 ---------YNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
                    +           G+ P+  AA +     V YL  
Sbjct: 119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 147 GTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY 206
                +  N    ++     +   +I+   L   D++G T L  AA +GN      L+ Y
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIA-NMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 207 NKNLPNMRNRIGQCPIHCAA 226
             + P + N+ G  P+   A
Sbjct: 306 GAD-PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 148 TLFHSMANINEDEAHR--------LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKA 199
           T+ H +   +              +L  ++       ++       +             
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI 262

Query: 200 AKIL--VKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
            + L       N+ N ++  G   ++ AAR G+   V+ LL  
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHS---MANINEDEAHRLLDEFLD 170
           +L  A+  +D   V    +   D                   +A    ++A   L +F+ 
Sbjct: 135 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 194

Query: 171 MISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
                 L+     G T L  AA+       K+L+K         N  G+  +  A +  H
Sbjct: 195 QNG-GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHH 252

Query: 231 RETVEYL 237
           +E  E L
Sbjct: 253 KECEELL 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 173 SPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE 232
           + ++         TPL  A    +  A + L++   N+ N  +  G+ P+H A   GH  
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTG 282

Query: 233 TVEYLLSVTG-VEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCNTLSSNMHIF 289
                L     +   DS  +     A E     +  L+    + +       +    +
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=244.80  Aligned_cols=210  Identities=14%  Similarity=0.106  Sum_probs=164.2

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcC-CHHHHHHHHHcCC
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKT-SEDWFREMVETGV  105 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~Ll~~g~  105 (289)
                      ....+...|+.++|++|++.+.........                .++..+..+.+   .+...+ ...+++.|++.|+
T Consensus        14 ~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~----------------~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga   77 (269)
T 4b93_B           14 KLLRAVADGDLEMVRYLLEWTEEDLEDAED----------------TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL   77 (269)
T ss_dssp             HHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------CCC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCcccccccc----------------cccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence            344566789999999999988654321100                00111111111   122222 2347889999999


Q ss_pred             cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC
Q 039376          106 KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT  182 (289)
Q Consensus       106 ~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~  182 (289)
                      ++   |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||+|+|+..++   .+++++|++.  |++++.+|.
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~-~~~g~t~l~~a~~~~~---~~~~~~Ll~~--g~~~n~~d~  150 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGAR-NADQAVPLHLACQQGH---FQVVKCLLDS--NAKPNKKDL  150 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHT--TCCSCCCCT
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCcc-CCCCCCccccccccCh---HHHHHHHHHC--CCCCCCCCC
Confidence            87   5689999999999999999999998 68999998 9999999999999999   9999999999  999999999


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccc
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGL  262 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~  262 (289)
                      .|+||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          +.+.+|+
T Consensus       151 ~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~----------~~d~~G~  219 (269)
T 4b93_B          151 SGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ----------VLNKRQR  219 (269)
T ss_dssp             TCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC----------CCCTTSC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCC
Confidence            9999999999999999999999999996 9999999999999999999999999999999999          9999999


Q ss_pred             hHHHHHHHhCC
Q 039376          263 KLLEILIEFNF  273 (289)
Q Consensus       263 ~~l~~a~~~g~  273 (289)
                      |||++|+.+|.
T Consensus       220 TpL~~A~~~~~  230 (269)
T 4b93_B          220 TAVDCAEQNSK  230 (269)
T ss_dssp             CSGGGSCTTCH
T ss_pred             CHHHHHHhCCc
Confidence            99999988775

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.6e-33  Score=219.89  Aligned_cols=151  Identities=24%  Similarity=0.335  Sum_probs=140.6

Q ss_pred             HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           87 IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        87 ~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      .|+..|+.++++.|+++|+++   |..|.||||+|+..++.+++++|++ .+++++.+ +..|+||||+|+..|+   .+
T Consensus        10 ~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~-d~~g~TpLh~A~~~g~---~~   84 (169)
T 4gpm_A           10 EAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK-DSDGRTPLHHAAENGH---KE   84 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhh-ccCCCCHHHHHHHcCC---HH
Confidence            477889999999999999987   5689999999999999999999998 68999999 9999999999999999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  243 (289)
                      ++++|++.  |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++||+
T Consensus        85 ~v~~Ll~~--gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           85 VVKLLISK--GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHC--cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            99999999  9999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             cc
Q 039376          244 EE  245 (289)
Q Consensus       244 ~~  245 (289)
                      ++
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-33  Score=249.62  Aligned_cols=230  Identities=18%  Similarity=0.208  Sum_probs=202.6

Q ss_pred             chhhhhhcCCchHHHHHHHhccCCCc---------hhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHH
Q 039376           29 PSSRLLDSKNEDEIVKMKQKDFAQPS---------SKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDW   96 (289)
Q Consensus        29 ~~~~~~~~~~~~~iv~~L~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~   96 (289)
                      .....+...|..+++++|++.+.++.         ...++..+..++++++...+......+..+.+   .++..++.++
T Consensus       148 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  227 (437)
T 1n11_A          148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV  227 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            34556677888899999998875432         35566677788888888888777666555444   4778899999


Q ss_pred             HHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccC
Q 039376           97 FREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMIS  173 (289)
Q Consensus        97 ~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~  173 (289)
                      +++|++.|+++   +..|.||||+|++.|+.+++++|++ .+++++.. +..|.||||+|+..|+   .+++++|++.  
T Consensus       228 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--  300 (437)
T 1n11_A          228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLG-NKSGLTPLHLVAQEGH---VPVADVLIKH--  300 (437)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHH--
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHhC--
Confidence            99999999876   4578999999999999999999998 58888888 8999999999999999   9999999999  


Q ss_pred             CCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC
Q 039376          174 PLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYS  253 (289)
Q Consensus       174 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  253 (289)
                      |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++        
T Consensus       301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~--------  371 (437)
T 1n11_A          301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--------  371 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--------
T ss_pred             CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC--------
Confidence            9999999999999999999999999999999999995 9999999999999999999999999999999999        


Q ss_pred             CcccccccchHHHHHHHhCCCCc
Q 039376          254 NPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       254 ~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                        ..+.+|.||+++|...|+.++
T Consensus       372 --~~~~~g~t~l~~A~~~g~~~~  392 (437)
T 1n11_A          372 --EVSSDGTTPLAIAKRLGYISV  392 (437)
T ss_dssp             --CCCSSSCCHHHHHHHTTCHHH
T ss_pred             --CCCCCCCCHHHHHHHcCcHHH
Confidence              999999999999999998764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.3e-33  Score=234.14  Aligned_cols=179  Identities=21%  Similarity=0.208  Sum_probs=167.5

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.++..++.+++++|+++|+++   +..|.||||+|+..|+.+++++|++.+..+++.+ +..|.||||+|+..|+   
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---  136 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAV---  136 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC-CTTCCCHHHHHHHHTC---
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc-CCCCCcHHHHHHHcCh---
Confidence            45688899999999999999987   5689999999999999999999999655588888 8999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|+||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus       137 ~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          137 EGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             SSHHHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999  9999999999999999999999999999999999995 999999999999999999999999999999


Q ss_pred             CCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      ++++          ..+..|.||+++|++.|+.++....
T Consensus       214 a~~~----------~~d~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          214 ANRD----------ITDHMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             CCTT----------CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcc----------ccccCCCCHHHHHHHcCCHHHHHHH
Confidence            9999          9999999999999999999865443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2e-32  Score=226.62  Aligned_cols=210  Identities=17%  Similarity=0.126  Sum_probs=186.3

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV  107 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~  107 (289)
                      ......+...|..+++++|++.+.+.....              .       ......+.++..++.+++++|+++|+++
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~-------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   70 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANIDTCS--------------E-------DQRTPLMEAAENNHLEAVKYLIKAGALV   70 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC--------------T-------TCCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcCccC--------------C-------CCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            345667778899999999999886543221              0       1122345678889999999999999876


Q ss_pred             ---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCC
Q 039376          108 ---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSG  184 (289)
Q Consensus       108 ---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g  184 (289)
                         +..|.||||+|+..|+.+++++|++.+..+++.. +..|.||||+|+..++   .+++++|++.  |++++.++..|
T Consensus        71 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g  144 (237)
T 3b7b_A           71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKH---VDLVKLLLSK--GSDINIRDNEE  144 (237)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTS
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHC--CCCCCccCCCC
Confidence               5689999999999999999999999655888888 8999999999999999   9999999999  99999999999


Q ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchH
Q 039376          185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKL  264 (289)
Q Consensus       185 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~  264 (289)
                      .||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|++++          ..+..|.||
T Consensus       145 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t~  213 (237)
T 3b7b_A          145 NICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT----------LKNKEGETP  213 (237)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT----------CCCTTSCCH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC----------ccCCCCCCH
Confidence            99999999999999999999999995 9999999999999999999999999999999999          999999999


Q ss_pred             HHHHHHhCCCC
Q 039376          265 LEILIEFNFLG  275 (289)
Q Consensus       265 l~~a~~~g~~~  275 (289)
                      +++|+.+|...
T Consensus       214 l~~A~~~~~~~  224 (237)
T 3b7b_A          214 LQCASLNSQVW  224 (237)
T ss_dssp             HHHSCTTCHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-32  Score=226.01  Aligned_cols=198  Identities=19%  Similarity=0.182  Sum_probs=175.3

Q ss_pred             hhhhcccCCCCccchh-cccc---ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCC
Q 039376           65 EITEMKPANDPIIEVK-SHER---QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDT  137 (289)
Q Consensus        65 ~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~  137 (289)
                      ++.+++...++.++.. +..+   .+.|+..++.+++++|+++|+++   +..|.||||+|+..|+.+++++|++....+
T Consensus         5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~   84 (223)
T 2f8y_A            5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD   84 (223)
T ss_dssp             CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred             HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4445555555555433 2333   34588899999999999999987   568999999999999999999999965558


Q ss_pred             cccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Q 039376          138 LYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRI  217 (289)
Q Consensus       138 ~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~  217 (289)
                      ++.+ +..|.||||+|+..++   .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..
T Consensus        85 ~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  157 (223)
T 2f8y_A           85 LDAR-MHDGTTPLILAARLAV---EGMLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR  157 (223)
T ss_dssp             TTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cccC-CCCCCcHHHHHHHhCc---HHHHHHHHHc--CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            8888 8999999999999999   9999999999  9999999999999999999999999999999999995 999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          218 GQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       218 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      |+||||+|+..|+.+++++|+++|++++          ..+..|.||+++|+..|+.++...
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~~~~i~~~  209 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANRD----------ITDHMDRLPRDIAQERMHHDIVRL  209 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCc----------cccccCCCHHHHHHHhcchHHHHH
Confidence            9999999999999999999999999999          999999999999999999885443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.5e-32  Score=229.22  Aligned_cols=234  Identities=15%  Similarity=0.148  Sum_probs=204.7

Q ss_pred             hhhhhcCCchHHHHHHHhccCCCc----------hhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHH
Q 039376           31 SRLLDSKNEDEIVKMKQKDFAQPS----------SKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWF   97 (289)
Q Consensus        31 ~~~~~~~~~~~iv~~L~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~   97 (289)
                      ...+...|..++|++|++.+.+..          ...+...+..++++++...+..++..+..+.+   .++..++.+++
T Consensus         9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   88 (285)
T 1wdy_A            9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLL   88 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence            445667899999999999875432          35667778888999999888888777666555   47788999999


Q ss_pred             HHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCccccc---------CCCCChHHHHHHhcCCchHHHHH
Q 039376           98 REMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKF---------TESCGTLFHSMANINEDEAHRLL  165 (289)
Q Consensus        98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~---------~~~~~t~Lh~A~~~g~~~~~~~v  165 (289)
                      ++|+++|+++   +..|.||||+|+..|+.+++++|++ .+++++...         +..|.||||+|+..|+   .+++
T Consensus        89 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v  164 (285)
T 1wdy_A           89 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVL  164 (285)
T ss_dssp             HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHH
T ss_pred             HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHH
Confidence            9999999987   5689999999999999999999999 577776542         4668999999999999   9999


Q ss_pred             HHHHhccCCCCccccCCCCCCHHHHHHHhCC----HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-c
Q 039376          166 DEFLDMISPLDLEETDTSGGTPLTSAAIVGN----TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS-V  240 (289)
Q Consensus       166 ~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~  240 (289)
                      ++|++.. |++++.++..|.||||+|+..++    .+++++|+++|+++ +.++..|+||||+|+..|+.+++++|++ +
T Consensus       165 ~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  242 (285)
T 1wdy_A          165 KILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHhc-CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence            9999865 89999999999999999999999    89999999999995 9999999999999999999999999998 8


Q ss_pred             CCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      |++++          ..+..|.|||++|+..|+.++...+
T Consensus       243 g~~~~----------~~~~~g~t~l~~A~~~~~~~i~~~L  272 (285)
T 1wdy_A          243 HIEIN----------DTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             SCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCcc----------ccCCCCCcHHHHHHHcCcHHHHHHH
Confidence            99999          9999999999999999998854433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.6e-32  Score=230.48  Aligned_cols=210  Identities=14%  Similarity=0.068  Sum_probs=168.2

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV  107 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~  107 (289)
                      .....++...|+.++|++|++.+..+......           .       .......+.|+..++.+++++|+++|+++
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----------~-------~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   71 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-----------N-------DLGQTALHLAAILGEASTVEKLYAAGAGV   71 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-----------C-------TTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccccc-----------C-------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            34567778899999999999988765322200           0       01123345688899999999999999987


Q ss_pred             ---CCCCchHHHHHHHcCCHHHHHHHHhhCCCC-----------------------------------------------
Q 039376          108 ---DLGEHPQLRRALVRKDWKEVERFISENPDT-----------------------------------------------  137 (289)
Q Consensus       108 ---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~-----------------------------------------------  137 (289)
                         +..|.||||+|++.|+.+++++|++. ++.                                               
T Consensus        72 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (282)
T 1oy3_D           72 LVAERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ  150 (282)
T ss_dssp             SCCCTTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGG
T ss_pred             CCCCCCCCCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc
Confidence               56899999999999999999999984 332                                               


Q ss_pred             cccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC-CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC
Q 039376          138 LYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT-SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR  216 (289)
Q Consensus       138 ~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~  216 (289)
                      ++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++. .|+||||+|+..|+.+++++|+++|+++ +.++.
T Consensus       151 ~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~  223 (282)
T 1oy3_D          151 LEAE-NYDGHTPLHVAVIHKD---AEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMY  223 (282)
T ss_dssp             TTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CCCc-CCCCcCHHHHHHHcCC---HHHHHHHHHc--CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence            5556 7889999999999999   9999999999  999999985 4999999999999999999999999995 99999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376          217 IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF  273 (289)
Q Consensus       217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~  273 (289)
                      .|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++|.....
T Consensus       224 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          224 GGRTPLGSALLRPNPILARLLRAHGAPEP----------EDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TSCCHHHHHHTSSCHHHHHHHHHTTCCCC----------CCC---------------
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHcCCCcC----------cCCCcccccccccCCccc
Confidence            99999999999999999999999999999          999999999999987553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6e-32  Score=243.60  Aligned_cols=233  Identities=15%  Similarity=0.133  Sum_probs=193.6

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCC---------chhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHH
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQP---------SSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWF   97 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~   97 (289)
                      ...++...|+.+++++|++.+...         ....+...+..++++++...+...+..+..+.+   .++..++.+++
T Consensus       116 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  195 (437)
T 1n11_A          116 PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV  195 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            344455566666666666665332         234455566677777777777777666555544   47778888899


Q ss_pred             HHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC
Q 039376           98 REMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP  174 (289)
Q Consensus        98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g  174 (289)
                      ++|+++|+++   +..|.||||+|+..|+.+++++|++ .+.+++.. +..|.||||+|+..|+   .+++++|++.  +
T Consensus       196 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--~  268 (437)
T 1n11_A          196 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAE-SVQGVTPLHLAAQEGH---AEMVALLLSK--Q  268 (437)
T ss_dssp             HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTT--T
T ss_pred             HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhc--C
Confidence            9998888876   4478899999999999999999888 57888888 8899999999999999   9999999998  8


Q ss_pred             CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 039376          175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSN  254 (289)
Q Consensus       175 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  254 (289)
                      ++++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++         
T Consensus       269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n---------  338 (437)
T 1n11_A          269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN---------  338 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT---------
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC---------
Confidence            999999999999999999999999999999999996 9999999999999999999999999999999999         


Q ss_pred             cccccccchHHHHHHHhCCCCccccc
Q 039376          255 PFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       255 ~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                       ..+..|.||||+|+..|+.++...+
T Consensus       339 -~~~~~g~t~L~~A~~~g~~~iv~~L  363 (437)
T 1n11_A          339 -AKTKLGYSPLHQAAQQGHTDIVTLL  363 (437)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -CCCCCCCCHHHHHHHCChHHHHHHH
Confidence             9999999999999999988854443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.5e-33  Score=244.22  Aligned_cols=212  Identities=11%  Similarity=0.064  Sum_probs=185.9

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCCC
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDL  109 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~  109 (289)
                      ...++...|+.++|++|++.+.++....                     .......+.|+..++.+++++|+++|++++.
T Consensus        23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d---------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   81 (364)
T 3ljn_A           23 KIHVAARKGQTDEVRRLIETGVSPTIQN---------------------RFGCTALHLACKFGCVDTAKYLASVGEVHSL   81 (364)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCC---------------------TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccC---------------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCccc
Confidence            4566677899999999999886653222                     0112334568889999999999999998865


Q ss_pred             -CCchHHHHHHHcCCHHHHHHHHhhC---CCCccc-----------------ccCCCCChHHHHHHhcC--CchHHHHHH
Q 039376          110 -GEHPQLRRALVRKDWKEVERFISEN---PDTLYA-----------------KFTESCGTLFHSMANIN--EDEAHRLLD  166 (289)
Q Consensus       110 -~g~t~Lh~A~~~g~~~~v~~ll~~~---~~~~~~-----------------~~~~~~~t~Lh~A~~~g--~~~~~~~v~  166 (289)
                       .|.||||+|+..|+.+++++|++..   +.+++.                 + +..|.||||+|+..|  +   .++++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~---~~~v~  157 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEY---LEMIK  157 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE-EESCCCHHHHHHHSCGGG---HHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC-CCCCCCHHHHHHHcCCch---HHHHH
Confidence             8999999999999999999999841   555555                 6 788999999999999  9   99999


Q ss_pred             HHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          167 EFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKN-----LPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       167 ~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      +|++.  |++++.++..|.||||+|+..|+.+++++|+++|++     + +..+..|+||||+|+..|+.+++++|+++|
T Consensus       158 ~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  234 (364)
T 3ljn_A          158 ILVQL--GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMG  234 (364)
T ss_dssp             HHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT
T ss_pred             HHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            99999  999999999999999999999999999999999988     7 899999999999999999999999999999


Q ss_pred             CCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      ++++          ..+..|.|||++|+..|+.++...
T Consensus       235 ad~~----------~~d~~g~tpL~~A~~~g~~~~v~~  262 (364)
T 3ljn_A          235 IDVN----------MEDNEHTVPLYLSVRAAMVLLTKE  262 (364)
T ss_dssp             CCTT----------CCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred             CCCC----------CCCCCCCCHHHHHHHhChHHHHHH
Confidence            9999          999999999999999999875443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.2e-32  Score=224.53  Aligned_cols=209  Identities=17%  Similarity=0.126  Sum_probs=182.7

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC--
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV--  107 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~--  107 (289)
                      ....+...|..++++++++.+......             ..       .......+.++..++.+++++|+++|+++  
T Consensus         9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~-------------~~-------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   68 (231)
T 3aji_A            9 MICNLAYSGKLDELKERILADKSLATR-------------TD-------QDSRTALHWACSAGHTEIVEFLLQLGVPVND   68 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCGGGGGC-------------CC-------TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             hHHHHHHhCCHHHHHHHHHhchhhhhc-------------CC-------CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC
Confidence            355566788999999998875322100             00       01122335688889999999999999887  


Q ss_pred             -CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376          108 -DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT  186 (289)
Q Consensus       108 -~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t  186 (289)
                       +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..++   .+++++|++.  |++++.++..|.|
T Consensus        69 ~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t  141 (231)
T 3aji_A           69 KDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEG--GANPDAKDHYDAT  141 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred             cCCCCCCHHHHHHHcCHHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCc
Confidence             5589999999999999999999999 58999998 9999999999999999   9999999999  9999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376          187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE  266 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~  266 (289)
                      |||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|++++          ..+..|.||++
T Consensus       142 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~  210 (231)
T 3aji_A          142 AMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY----------IENKEEKTPLQ  210 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC----------CCCTTSCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC----------CCCCCCCCHHH
Confidence            999999999999999999999995 9999999999999999999999999999999999          99999999999


Q ss_pred             HHHHhCCCCc
Q 039376          267 ILIEFNFLGQ  276 (289)
Q Consensus       267 ~a~~~g~~~~  276 (289)
                      +|...+..++
T Consensus       211 ~A~~~~~~~i  220 (231)
T 3aji_A          211 VAKGGLGLIL  220 (231)
T ss_dssp             HSCHHHHHHH
T ss_pred             HHHhhHHHHH
Confidence            9988877664

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.6e-32  Score=214.95  Aligned_cols=150  Identities=23%  Similarity=0.306  Sum_probs=143.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      ++|+.||+.|+.++|++||+ .|++++.+ +..|+||||+|+..++   .+++++|++.  |++++.++..|+||||+|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-d~~g~t~l~~a~~~~~---~~~~~~ll~~--gad~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-DSDGRTPLHHAAENGH---KEVVKLLISK--GADVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHhc--ccchhhhccCCCCHHHHHH
Confidence            47999999999999999999 69999999 9999999999999999   9999999999  9999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       193 ~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                      ..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++          ..+.+|+|||++|+..|
T Consensus        79 ~~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~----------~~d~~G~TpL~~A~~~g  147 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN----------TSDSDGRTPLDLAREHG  147 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------ccCCCCCCHHHHHHHcC
Confidence            999999999999999996 9999999999999999999999999999999999          99999999999999999


Q ss_pred             CCCccccc
Q 039376          273 FLGQYTCN  280 (289)
Q Consensus       273 ~~~~~~~~  280 (289)
                      +.++...+
T Consensus       148 ~~~iv~~L  155 (169)
T 4gpm_A          148 NEEVVKLL  155 (169)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            98865444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.4e-32  Score=225.54  Aligned_cols=214  Identities=14%  Similarity=0.095  Sum_probs=184.0

Q ss_pred             CchhhhhhcCCchHHHHHHHhc----cCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHc
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKD----FAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVET  103 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~  103 (289)
                      .....++...|..+++++|++.    +.......                     .......+.++..++.+++++|+++
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~g~t~L~~A~~~~~~~~v~~Ll~~   68 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN---------------------NLRQTPLHLAVITTLPSVVRLLVTA   68 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC---------------------TTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc---------------------ccCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4456677788999999999873    22221111                     0112233467888999999999999


Q ss_pred             CCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCC----CcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCC
Q 039376          104 GVKV---DLGEHPQLRRALVRKDWKEVERFISENPD----TLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLD  176 (289)
Q Consensus       104 g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~----~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~  176 (289)
                      |+++   +..|.||||+|+..|+.+++++|++. +.    +++.. +..|.||||+|+..|+   .+++++|++.  |++
T Consensus        69 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~  141 (241)
T 1k1a_A           69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLLLER--GAD  141 (241)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccccc-CcCCCcHHHHHHHcCC---HHHHHHHHHc--CCC
Confidence            9986   56899999999999999999999996 44    67777 8899999999999999   9999999999  999


Q ss_pred             ccccC-CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCc
Q 039376          177 LEETD-TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNP  255 (289)
Q Consensus       177 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  255 (289)
                      ++..+ ..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          
T Consensus       142 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------  210 (241)
T 1k1a_A          142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS----------  210 (241)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------
T ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC----------
Confidence            99998 78999999999999999999999999995 9999999999999999999999999999999999          


Q ss_pred             ccccccchHHHHHHHhCCCCccccc
Q 039376          256 FAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       256 ~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      ..+..|.||+++|+..|+.+++..+
T Consensus       211 ~~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          211 LKNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             CCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             CcCCCCCCHHHHHHhcCcHHHHhhh
Confidence            9999999999999999988865544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=8.2e-32  Score=221.52  Aligned_cols=206  Identities=14%  Similarity=0.099  Sum_probs=178.2

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCC--cC
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGV--KV  107 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~--~~  107 (289)
                      ....+...|..+++++|++.+.......                    +.......+.++..++.+++++|+++|+  ++
T Consensus         5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~   64 (228)
T 2dzn_A            5 PLHQACMENEFFKVQELLHSKPSLLLQK--------------------DQDGRIPLHWSVSFQAHEITSFLLSKMENVNL   64 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGGTTCC--------------------CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG
T ss_pred             HHHHHHHhCCHHHHHHHHhcCccccccC--------------------CCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence            4556677889999999998874332100                    0011233456888899999999999994  32


Q ss_pred             ----CCCCchHHHHHHHcCCHHHHHHHHhhCC--CCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC
Q 039376          108 ----DLGEHPQLRRALVRKDWKEVERFISENP--DTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD  181 (289)
Q Consensus       108 ----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~--~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~  181 (289)
                          +..|.||||+|+..|+.+++++|++. +  .+++.+ +..|.||||+|+..++   .+++++|++.  |++++.++
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~  137 (228)
T 2dzn_A           65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIEN--GASVRIKD  137 (228)
T ss_dssp             GGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCSCCCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccC-CcCCCCHHHHHHHcCC---HhHHHHHHHc--CCCccccC
Confidence                56899999999999999999999984 5  788888 8999999999999999   9999999999  99999999


Q ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCCccccc
Q 039376          182 TSGGTPLTSAAIVGNTKAAKILVKYN-KNLPNMRNRIGQCPIHCAARSGHRETVEYLL-SVTGVEEEDSHEKYSNPFAGE  259 (289)
Q Consensus       182 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~  259 (289)
                      ..|.||||+|+..|+.+++++|++.| +++ +.++..|+||||+|+..|+.+++++|+ ++|++++          ..+.
T Consensus       138 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~----------~~~~  206 (228)
T 2dzn_A          138 KFNQIPLHRAASVGSLKLIELLCGLGKSAV-NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD----------LVDN  206 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTTCCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC----------CBCT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCcccc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC----------ccCC
Confidence            99999999999999999999999999 885 999999999999999999999999999 9999999          9999


Q ss_pred             ccchHHHHHHHhCC
Q 039376          260 CGLKLLEILIEFNF  273 (289)
Q Consensus       260 ~g~~~l~~a~~~g~  273 (289)
                      .|.||+++|...+.
T Consensus       207 ~g~t~l~~A~~~~~  220 (228)
T 2dzn_A          207 KGAKAEDVALNEQV  220 (228)
T ss_dssp             TSCBGGGGCSSTTH
T ss_pred             CCCcHHHHHHHHHH
Confidence            99999999976543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=1.4e-31  Score=226.84  Aligned_cols=178  Identities=16%  Similarity=0.140  Sum_probs=162.0

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCc---C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCC
Q 039376           85 QQIKQVKTSEDWFREMVETGVK---V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINE  158 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~---~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (289)
                      .+.|+..++.+++++|+++|++   +   +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+
T Consensus        13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~g~tpL~~A~~~~~   90 (282)
T 1oy3_D           13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVA-ERGGHTALHLACRVRA   90 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-CTTSCCHHHHHTTTTC
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC
Confidence            3468889999999999999876   3   5689999999999999999999999 68999999 9999999999999999


Q ss_pred             chHHHHHHHHHhccCCCC-----------------------------------------------ccccCCCCCCHHHHH
Q 039376          159 DEAHRLLDEFLDMISPLD-----------------------------------------------LEETDTSGGTPLTSA  191 (289)
Q Consensus       159 ~~~~~~v~~Ll~~~~g~~-----------------------------------------------~~~~~~~g~t~L~~A  191 (289)
                         .+++++|++.  +++                                               ++.++..|.||||+|
T Consensus        91 ---~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  165 (282)
T 1oy3_D           91 ---HTCACVLLQP--RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (282)
T ss_dssp             ---HHHHHHHSSS--CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             ---cchhHhhhcc--CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHH
Confidence               9999999987  543                                               677888999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376          192 AIVGNTKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIE  270 (289)
Q Consensus       192 ~~~g~~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  270 (289)
                      +..|+.+++++|+++|+++ +..+. .|+||||+|+..|+.+++++|+++|++++          ..+..|.||||+|+.
T Consensus       166 ~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          166 VIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT----------ARMYGGRTPLGSALL  234 (282)
T ss_dssp             HHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc----------ccccCCCCHHHHHHH
Confidence            9999999999999999996 88875 49999999999999999999999999999          999999999999999


Q ss_pred             hCCCCccccc
Q 039376          271 FNFLGQYTCN  280 (289)
Q Consensus       271 ~g~~~~~~~~  280 (289)
                      .|+.++...+
T Consensus       235 ~~~~~~v~~L  244 (282)
T 1oy3_D          235 RPNPILARLL  244 (282)
T ss_dssp             SSCHHHHHHH
T ss_pred             cCCcHHHHHH
Confidence            9988854433

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=1.4e-30  Score=226.89  Aligned_cols=231  Identities=13%  Similarity=0.038  Sum_probs=179.3

Q ss_pred             hhhhhcCCchHHHHHHHhccCCCc----------hhhhhcCChhhhhhcccCCCCccch---------------------
Q 039376           31 SRLLDSKNEDEIVKMKQKDFAQPS----------SKLVVGKKEDEITEMKPANDPIIEV---------------------   79 (289)
Q Consensus        31 ~~~~~~~~~~~iv~~L~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~---------------------   79 (289)
                      ...+...|+.++|++|++.|+++.          ...++..+..+++++|+..++..+.                     
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  108 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLL  108 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhh
Confidence            344556777777777777764432          2345556666777777665554433                     


Q ss_pred             ------------hcccccc---HHHhcCCHHHHHHHHHcCCcCC-------------CCCchHHHHHHHcCCHHHHHHHH
Q 039376           80 ------------KSHERQQ---IKQVKTSEDWFREMVETGVKVD-------------LGEHPQLRRALVRKDWKEVERFI  131 (289)
Q Consensus        80 ------------~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~~-------------~~g~t~Lh~A~~~g~~~~v~~ll  131 (289)
                                  .+..+.+   .+...++.+++++|+++|++++             ..|.||||+|++.|+.+++++||
T Consensus       109 ~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL  188 (337)
T 4g8k_A          109 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL  188 (337)
T ss_dssp             HHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHH
Confidence                        3333333   4667888999999999988753             25789999999999999999999


Q ss_pred             hhCCCCcccccCCCCChHHHHHHhcCCch-HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCC
Q 039376          132 SENPDTLYAKFTESCGTLFHSMANINEDE-AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKN  209 (289)
Q Consensus       132 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~-~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~  209 (289)
                      .+.+++++.+ +..|.|++|+++..+... ...++++|++.  |++++.++..|+||||+|+..|+.+++++|++. |++
T Consensus       189 ~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~--gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~  265 (337)
T 4g8k_A          189 DEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  265 (337)
T ss_dssp             HHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHT--TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred             hccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence            7778999988 889999998877665421 13578888888  899999999999999999999999999999985 778


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          210 LPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       210 i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      + +.+|..|+||||+|+..|+.+++++|+++|++++          .     .+||++|+.+|+.++...+
T Consensus       266 v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n----------~-----~~~L~~A~~~~~~~iv~~L  320 (337)
T 4g8k_A          266 I-NDTDSDGKTALLLAVELKLKKIAELLCKRGASTD----------C-----GDLVMTARRNYDHSLVKVL  320 (337)
T ss_dssp             T-TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST----------T-----CCHHHHHHHTTCHHHHHHH
T ss_pred             c-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------C-----CCHHHHHHHcCCHHHHHHH
Confidence            5 8999999999999999999999999999999987          4     3589999999888754433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.8e-31  Score=223.65  Aligned_cols=204  Identities=13%  Similarity=0.124  Sum_probs=177.1

Q ss_pred             CCchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCc
Q 039376           27 SQPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVK  106 (289)
Q Consensus        27 ~~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~  106 (289)
                      ......++...|..++|++|++.+.+.....              .       ......+.|+..++.+++++|+++|++
T Consensus        59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~--------------~-------~g~t~L~~A~~~g~~~~v~~Ll~~ga~  117 (285)
T 3d9h_A           59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT--------------A-------DHVSPLHEACLGGHLSCVKILLKHGAQ  117 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC--------------T-------TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC--------------C-------CCCCHHHHHHHCCcHHHHHHHHHCCCC
Confidence            3445667778889999999998875543222              0       112234568888999999999999998


Q ss_pred             C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC
Q 039376          107 V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS  183 (289)
Q Consensus       107 ~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~  183 (289)
                      +   |..|.||||+|+..|+.+++++|++ .+++++..  ..|.||||+|+..|+   .+++++|++.  |++++.++..
T Consensus       118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~d~~  189 (285)
T 3d9h_A          118 VNGVTADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPE--SDLASPIHEAARRGH---VECVNSLIAY--GGNIDHKISH  189 (285)
T ss_dssp             SSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCBTT
T ss_pred             CCCCCCCCCCHHHHHHHcCHHHHHHHHHH-CCCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHC--CCCCCCcCCC
Confidence            7   5689999999999999999999998 57877654  459999999999999   9999999999  9999999999


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccch
Q 039376          184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLK  263 (289)
Q Consensus       184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~  263 (289)
                      |.||||+|+..|+.+++++|++.|+++ + .+..|+||||+|+..++.+++++|+++|++++          ..+..|.|
T Consensus       190 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t  257 (285)
T 3d9h_A          190 LGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQ----------AKNAEGKR  257 (285)
T ss_dssp             TBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCC
Confidence            999999999999999999999999996 6 48999999999999999999999999999999          99999999


Q ss_pred             HHHHHHHh
Q 039376          264 LLEILIEF  271 (289)
Q Consensus       264 ~l~~a~~~  271 (289)
                      ||++|+.+
T Consensus       258 ~l~~A~~~  265 (285)
T 3d9h_A          258 PVELVPPE  265 (285)
T ss_dssp             GGGGSCTT
T ss_pred             HHHHhcCc
Confidence            99998843

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=5.7e-31  Score=217.27  Aligned_cols=183  Identities=15%  Similarity=0.180  Sum_probs=160.4

Q ss_pred             ccHHHhcCCHHHHHHHHHc-CCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCc-----ccccCCCCChHHHHHHh
Q 039376           85 QQIKQVKTSEDWFREMVET-GVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTL-----YAKFTESCGTLFHSMAN  155 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~-g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~-----~~~~~~~~~t~Lh~A~~  155 (289)
                      .+.|+..++.++++.|++. |+++   |..|.||||+|+..|+.+++++|++. ++++     +.+ +..|.||||+|+.
T Consensus         7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~-~~~g~t~L~~A~~   84 (232)
T 2rfa_A            7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSE-LYEGQTALHIAVI   84 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCST-TTTTCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-Cchhcccccccc-CCCCcCHHHHHHH
Confidence            4568889999999999998 8876   56899999999999999999999995 6655     444 6789999999999


Q ss_pred             cCCchHHHHHHHHHhccCCCCccccCC-------------CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          156 INEDEAHRLLDEFLDMISPLDLEETDT-------------SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       156 ~g~~~~~~~v~~Ll~~~~g~~~~~~~~-------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                      .|+   .+++++|++.  |++++..+.             .|.||||+|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus        85 ~~~---~~~v~~Ll~~--g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L  158 (232)
T 2rfa_A           85 NQN---VNLVRALLAR--GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVL  158 (232)
T ss_dssp             TTC---HHHHHHHHHT--TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             cCC---HHHHHHHHhC--CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence            999   9999999999  999988765             7999999999999999999999999995 99999999999


Q ss_pred             HHHHHcCCHHHH----HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          223 HCAARSGHRETV----EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       223 ~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      |+|+..++.+++    ++|+++|+++.    ........+..|.|||++|+..|+.++...
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~----~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~  215 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDGGDH----LKSLELVPNNQGLTPFKLAGVEGNIVMFQH  215 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTCSCS----SCCGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCchh----hhhhhccCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999988    99999999873    000001788899999999999999885443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.2e-30  Score=227.67  Aligned_cols=225  Identities=17%  Similarity=0.143  Sum_probs=188.5

Q ss_pred             hhhhcCCchHHHHHHHhcc-C---------CCchhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHHH
Q 039376           32 RLLDSKNEDEIVKMKQKDF-A---------QPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFR   98 (289)
Q Consensus        32 ~~~~~~~~~~iv~~L~~~~-~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   98 (289)
                      ..+...|..++|+.++... .         ......+...+..++++++...+++++..+..+.+   .++..++.++++
T Consensus        29 ~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~  108 (351)
T 3utm_A           29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE  108 (351)
T ss_dssp             HHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHH
Confidence            3345677777777777642 1         22345666777778888888877777777666544   477889999999


Q ss_pred             HHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccc----------------------------------
Q 039376           99 EMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAK----------------------------------  141 (289)
Q Consensus        99 ~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~----------------------------------  141 (289)
                      +|+++|+++   |..|.||||+|+..|+.+++++|++ .+++++..                                  
T Consensus       109 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  187 (351)
T 3utm_A          109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR  187 (351)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHH
Confidence            999999987   5578999999999999999999998 57776543                                  


Q ss_pred             -------------------cCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHH
Q 039376          142 -------------------FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKI  202 (289)
Q Consensus       142 -------------------~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  202 (289)
                                         .+..|.||||+|+..++....+++++|++.  |++++.++..|.||||+|+..|+.+++++
T Consensus       188 ~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  265 (351)
T 3utm_A          188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK--GANVNEKNKDFMTPLHVAAERAHNDVMEV  265 (351)
T ss_dssp             TTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             hccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                               135678999999999443338999999999  99999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376          203 LVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIE  270 (289)
Q Consensus       203 Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  270 (289)
                      |+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++|..
T Consensus       266 Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~~~~g~tal~~a~~  322 (351)
T 3utm_A          266 LHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS----------IISLQGFTAAQMGNE  322 (351)
T ss_dssp             HHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHSCH
T ss_pred             HHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------CcCCCCCChhhhhhH
Confidence            99999996 9999999999999999999999999999999999          999999999998743

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=7.7e-31  Score=211.69  Aligned_cols=177  Identities=14%  Similarity=0.202  Sum_probs=163.0

Q ss_pred             ccHHHhcCCHHHHHHHHHcCC-cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCch
Q 039376           85 QQIKQVKTSEDWFREMVETGV-KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDE  160 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~-~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (289)
                      .+.++..++.+.++.|+..+. ++   |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+  
T Consensus         9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~~--   84 (201)
T 3hra_A            9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-NSISDSPYLYAGAQGR--   84 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC--
T ss_pred             HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC--
Confidence            445788899999999999876 54   5689999999999999999999999 68999998 9999999999999999  


Q ss_pred             HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCC-----HHHH
Q 039376          161 AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYN-KNLPNMRNRIGQCPIHCAARSGH-----RETV  234 (289)
Q Consensus       161 ~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~g~t~L~~A~~~~~-----~~~~  234 (289)
                       .+++++|++.. +.+++..+..|.||||+|+..|+.+++++|+++| +++ +.++..|+||||+|+..++     .+++
T Consensus        85 -~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           85 -TEILAYMLKHA-TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             -HHHHHHHHHHS-CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             -HHHHHHHHhcc-CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence             99999999553 7899999999999999999999999999999999 774 9999999999999999988     9999


Q ss_pred             HHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          235 EYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       235 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      ++|+++|++++          ..+..|.|||++|+..|+.++..
T Consensus       162 ~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~~~~~~~  195 (201)
T 3hra_A          162 KLLMENGADQS----------IKDNSGRTAMDYANQKGYTEISK  195 (201)
T ss_dssp             HHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHCCCCCC----------ccCCCCCCHHHHHHHcCCHhHHH
Confidence            99999999999          99999999999999999888543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1.8e-30  Score=214.83  Aligned_cols=176  Identities=19%  Similarity=0.182  Sum_probs=164.8

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.++..++.+++++|+++|+++   +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   
T Consensus        15 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---   89 (237)
T 3b7b_A           15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPK-DAEGSTCLHLAAKKGH---   89 (237)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCC-CTTSCCHHHHHHHTTC---
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCC-CCCCCcHHHHHHHcCC---
Confidence            34588899999999999999987   5589999999999999999999998 68899988 8999999999999999   


Q ss_pred             HHHHHHHHhccCC-CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          162 HRLLDEFLDMISP-LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       162 ~~~v~~Ll~~~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      .+++++|++.  + .+++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++
T Consensus        90 ~~~~~~Ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  166 (237)
T 3b7b_A           90 YEVVQYLLSN--GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAA  166 (237)
T ss_dssp             HHHHHHHHTT--TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred             HHHHHHHHhC--CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999998  6 889999999999999999999999999999999995 99999999999999999999999999999


Q ss_pred             CCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      |++++          ..+..|.||||+|+..|..++..
T Consensus       167 g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~  194 (237)
T 3b7b_A          167 KCDLH----------AVNIHGDSPLHIAARENRYDCVV  194 (237)
T ss_dssp             TCCTT----------CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CCCCC----------CcCCCCCCHHHHHHHhCCHhHHH
Confidence            99999          99999999999999999887543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=3e-31  Score=222.24  Aligned_cols=172  Identities=14%  Similarity=0.154  Sum_probs=146.2

Q ss_pred             cCCHHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHH
Q 039376           91 KTSEDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLD  166 (289)
Q Consensus        91 ~~~~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~  166 (289)
                      .++.++++.|+++|+++    |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .++++
T Consensus        33 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~  107 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-DNMGRTPLHAAVSADA---QGVFQ  107 (253)
T ss_dssp             -------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---HHHHH
T ss_pred             CCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHH
Confidence            45789999999999876    5689999999999999999999999 58999999 9999999999999999   99999


Q ss_pred             HHHhccCCC-CccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          167 EFLDMISPL-DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       167 ~Ll~~~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      +|++.  +. +++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++
T Consensus       108 ~Ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  184 (253)
T 1yyh_A          108 ILIRN--RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD  184 (253)
T ss_dssp             HHHHS--TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHc--CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99998  65 89999999999999999999999999999999995 9999999999999999999999999999999999


Q ss_pred             cccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          246 EDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       246 ~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                                ..+..|.||||+|+..|..++...+
T Consensus       185 ----------~~~~~g~tpL~~A~~~~~~~~v~~L  209 (253)
T 1yyh_A          185 ----------MQNNREETPLFLAAREGSYETAKVL  209 (253)
T ss_dssp             ----------CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ----------CcCCCCCCHHHHHHHCCCHHHHHHH
Confidence                      9999999999999999998854433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=2e-30  Score=213.21  Aligned_cols=178  Identities=16%  Similarity=0.156  Sum_probs=162.9

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCC--CCccc-ccCCCCChHHHHHHhcC
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENP--DTLYA-KFTESCGTLFHSMANIN  157 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~--~~~~~-~~~~~~~t~Lh~A~~~g  157 (289)
                      .+.|+..++.++++.|++.+.+.    +..|.||||+|++.|+.+++++|++. +  .+++. . +..|.||||+|+..|
T Consensus         6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~-~~~g~t~L~~A~~~~   83 (228)
T 2dzn_A            6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYP-DDSGWTPFHIACSVG   83 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGCC-CTTSCCHHHHHHHHC
T ss_pred             HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc-cccccccccC-CCCCCCHHHHHHHcC
Confidence            35678889999999999998764    67899999999999999999999994 6  55555 5 789999999999999


Q ss_pred             CchHHHHHHHHHhccCC--CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 039376          158 EDEAHRLLDEFLDMISP--LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE  235 (289)
Q Consensus       158 ~~~~~~~v~~Ll~~~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~  235 (289)
                      +   .+++++|++.  |  ++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.++++
T Consensus        84 ~---~~~~~~Ll~~--g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           84 N---LEVVKSLYDR--PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             C---HHHHHHHHSS--SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             C---HHHHHHHHhC--CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHH
Confidence            9   9999999998  7  889999999999999999999999999999999995 999999999999999999999999


Q ss_pred             HHHhcC-CCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          236 YLLSVT-GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       236 ~Ll~~g-~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      +|+++| ++++          ..+..|.||||+|+..|+.++...+
T Consensus       158 ~Ll~~g~~~~~----------~~d~~g~t~L~~A~~~~~~~~v~~L  193 (228)
T 2dzn_A          158 LLCGLGKSAVN----------WQDKQGWTPLFHALAEGHGDAAVLL  193 (228)
T ss_dssp             HHHTTTCCCSC----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhcCccccc----------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999 9999          9999999999999999998854444

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=2.4e-31  Score=226.81  Aligned_cols=175  Identities=12%  Similarity=0.067  Sum_probs=138.7

Q ss_pred             cHHHhcCCHHHHHHHHHcCCcCCC-CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHH
Q 039376           86 QIKQVKTSEDWFREMVETGVKVDL-GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRL  164 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~~~~-~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~  164 (289)
                      +.|+..++.+++++|+++|++++. .|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .++
T Consensus        36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-d~~g~t~L~~A~~~g~---~~~  110 (285)
T 3kea_A           36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF-SGLDDSQF-DDKGNTALYYAVDSGN---MQT  110 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-CCCCCcHHHHHHHcCC---HHH
Confidence            457777888888888888887743 67888888888888888888887 57888877 7788888888888888   888


Q ss_pred             HHHHHhccCCCCccccCCCC-CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376          165 LDEFLDMISPLDLEETDTSG-GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       165 v~~Ll~~~~g~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  243 (289)
                      +++|++.  |++++.++..| .||||+|+..|+.+++++|+++|++. . ....|+||||+|+..|+.+++++|+++|++
T Consensus       111 v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad  186 (285)
T 3kea_A          111 VKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-F-DLAILLSCIHITIKNGHVDMMILLLDYMTS  186 (285)
T ss_dssp             HHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-C-CCSTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-c-cccCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence            8888888  88888888888 68888888888888888888888764 1 112778888888888888888888888888


Q ss_pred             cccccccCCCCcccccccchH-HHHHHHhCCCCcccc
Q 039376          244 EEEDSHEKYSNPFAGECGLKL-LEILIEFNFLGQYTC  279 (289)
Q Consensus       244 ~~~~~~~~~~~~~~~~~g~~~-l~~a~~~g~~~~~~~  279 (289)
                      ++          ..+..|.|| ||+|+..|+.++...
T Consensus       187 ~n----------~~~~~g~t~~L~~A~~~~~~~~v~~  213 (285)
T 3kea_A          187 TN----------TNNSLLFIPDIKLAIDNKDIEMLQA  213 (285)
T ss_dssp             TC----------TTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred             CC----------cccCCCCChHHHHHHHcCCHHHHHH
Confidence            88          788888886 888888887774433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=6.2e-31  Score=232.62  Aligned_cols=206  Identities=16%  Similarity=0.162  Sum_probs=179.8

Q ss_pred             hhhhcCChhhhhhccc--------CCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHc
Q 039376           56 KLVVGKKEDEITEMKP--------ANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVR  121 (289)
Q Consensus        56 ~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~  121 (289)
                      ..+...+..++++++.        ..+.+++..+..+.+   .|+..++.+++++|+++|+++   +..|.||||+|+..
T Consensus       130 h~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~  209 (373)
T 2fo1_E          130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN  209 (373)
T ss_dssp             HHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC
Confidence            4455555555555554        567777777666655   478899999999999999987   56899999999999


Q ss_pred             CCHHHHHHHHhhCC---CCcccccCCCCChHHHHHHhcC---CchHHHHHHHHHhccCCCCccc--------cCCCCCCH
Q 039376          122 KDWKEVERFISENP---DTLYAKFTESCGTLFHSMANIN---EDEAHRLLDEFLDMISPLDLEE--------TDTSGGTP  187 (289)
Q Consensus       122 g~~~~v~~ll~~~~---~~~~~~~~~~~~t~Lh~A~~~g---~~~~~~~v~~Ll~~~~g~~~~~--------~~~~g~t~  187 (289)
                      |+.+++++|++. +   .+++.. +..|.||||+|+..+   +   .+++++|++.  |++++.        .+..|.||
T Consensus       210 g~~~~v~~Ll~~-~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~---~~~v~~Ll~~--g~~~~~~~~~~~~~~d~~g~t~  282 (373)
T 2fo1_E          210 RDFGMMVYMLNS-TKLKGDIEEL-DRNGMTALMIVAHNEGRDQ---VASAKLLVEK--GAKVDYDGAARKDSEKYKGRTA  282 (373)
T ss_dssp             TCHHHHHHHTTS-HHHHHTTSCC-CTTSCCHHHHHHHSCSTTH---HHHHHHHHHH--TCCSSCCSGGGTSSSSCCCCCT
T ss_pred             CCHHHHHHHHhc-CccccChhhc-CCCCCCHHHHHHHhCCcch---HHHHHHHHHC--CCCcccccccccCcccccCCCH
Confidence            999999999984 4   678888 899999999999998   6   9999999999  898876        56789999


Q ss_pred             HHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYN-KNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE  266 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g-~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~  266 (289)
                      ||+|+..|+.+++++|++++ +++ +.+|..|+||||+|+..|+.+++++|+++|++++          ..+..|.|||+
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~----------~~d~~g~t~l~  351 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----------AVDATDHTARQ  351 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----------CCCSSSCCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------CCCCCCCCHHH
Confidence            99999999999999999886 785 9999999999999999999999999999999999          99999999999


Q ss_pred             HHHHhCCCCcccc
Q 039376          267 ILIEFNFLGQYTC  279 (289)
Q Consensus       267 ~a~~~g~~~~~~~  279 (289)
                      +|+.+|+.++...
T Consensus       352 ~A~~~g~~~iv~~  364 (373)
T 2fo1_E          352 LAQANNHHNIVDI  364 (373)
T ss_dssp             HHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHH
Confidence            9999999885443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=5.8e-30  Score=223.04  Aligned_cols=210  Identities=15%  Similarity=0.162  Sum_probs=180.8

Q ss_pred             hhhhhcCChhhhhhcccCCCCccchhccc-c---ccHHHhcCCHHHHHHHHHcCCcC-----------------------
Q 039376           55 SKLVVGKKEDEITEMKPANDPIIEVKSHE-R---QQIKQVKTSEDWFREMVETGVKV-----------------------  107 (289)
Q Consensus        55 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~Ll~~g~~~-----------------------  107 (289)
                      ...++..++.+++++|+..|++++..+.. +   .+.|+..++.+++++|+++|+++                       
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  108 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLL  108 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhh
Confidence            34567778889999999999998877654 3   34588999999999999998764                       


Q ss_pred             -------------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccc---------cCCCCChHHHHHHhcCCchHHHHH
Q 039376          108 -------------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAK---------FTESCGTLFHSMANINEDEAHRLL  165 (289)
Q Consensus       108 -------------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~---------~~~~~~t~Lh~A~~~g~~~~~~~v  165 (289)
                                   |..|.||||+|+..|+.++++++++ .+++++.+         .+..|.||||+|+..|+   .++|
T Consensus       109 ~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v  184 (337)
T 4g8k_A          109 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVL  184 (337)
T ss_dssp             HHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHH
T ss_pred             HHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHH
Confidence                         3468899999999999999999998 57776643         14568999999999999   9999


Q ss_pred             HHHHhccCCCCccccCCCCCCHHHHHHHhCC----HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-
Q 039376          166 DEFLDMISPLDLEETDTSGGTPLTSAAIVGN----TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV-  240 (289)
Q Consensus       166 ~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-  240 (289)
                      ++|++.. |++++.++..|.|++++++..+.    ..++++|+++|+++ +.++..|+||||+|+..|+.+++++|+.. 
T Consensus       185 ~~LL~~~-gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~  262 (337)
T 4g8k_A          185 KILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQE  262 (337)
T ss_dssp             HHHHHHS-CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTST
T ss_pred             HHHHhcc-CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhc
Confidence            9999754 89999999999999999887654    35889999999995 99999999999999999999999999974 


Q ss_pred             CCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      |++++          ..+.+|+||||+|+..|+.++...+
T Consensus       263 ~~~vn----------~~d~~G~TpL~~A~~~g~~~iv~~L  292 (337)
T 4g8k_A          263 HIEIN----------DTDSDGKTALLLAVELKLKKIAELL  292 (337)
T ss_dssp             TCCTT----------CBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             CCccc----------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            89999          9999999999999999998865444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=4.9e-30  Score=217.19  Aligned_cols=207  Identities=16%  Similarity=0.137  Sum_probs=183.8

Q ss_pred             hhhhcCChhhhhhcccCCCCccchh-cccc---ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHH
Q 039376           56 KLVVGKKEDEITEMKPANDPIIEVK-SHER---QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVE  128 (289)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~  128 (289)
                      ..++..+..++++++...++.++.. ...+   .+.++..++.+++++|+++|+++   +..|.||||+|+..|+.++++
T Consensus        10 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (285)
T 1wdy_A           10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK   89 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            4455666777888888888877766 3333   33588899999999999999986   568999999999999999999


Q ss_pred             HHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcccc----------CCCCCCHHHHHHHhCCHH
Q 039376          129 RFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEET----------DTSGGTPLTSAAIVGNTK  198 (289)
Q Consensus       129 ~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~----------~~~g~t~L~~A~~~g~~~  198 (289)
                      +|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++..          +..|.||||+|+..|+.+
T Consensus        90 ~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           90 LFLS-KGADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             HHHH-TTCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             HHHH-cCCCCCcc-CcccCCHHHHHHHhCC---HHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            9999 68999998 9999999999999999   9999999999  8988877          778999999999999999


Q ss_pred             HHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376          199 AAKILVKY-NKNLPNMRNRIGQCPIHCAARSGH----RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF  273 (289)
Q Consensus       199 ~v~~Ll~~-g~~i~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~  273 (289)
                      ++++|++. |+++ +..+..|+||||+|+..++    .+++++|+++|++++          ..+..|.||||+|+..|+
T Consensus       163 ~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          163 VLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN----------VRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS----------CCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC----------CcCCCCCcHHHHHHHcCC
Confidence            99999998 9995 9999999999999999999    999999999999999          999999999999999999


Q ss_pred             CCccccc
Q 039376          274 LGQYTCN  280 (289)
Q Consensus       274 ~~~~~~~  280 (289)
                      .++...+
T Consensus       232 ~~~v~~L  238 (285)
T 1wdy_A          232 LGLVQRL  238 (285)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8854433

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=3.8e-30  Score=212.07  Aligned_cols=176  Identities=16%  Similarity=0.142  Sum_probs=164.3

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCch
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDE  160 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (289)
                      .+.++..++.+.++.++..+...    +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+  
T Consensus        10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--   85 (231)
T 3aji_A           10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-DDAGWSPLHIAASAGX--   85 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-CTTSCCHHHHHHHHTC--
T ss_pred             HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCc-CCCCCCHHHHHHHcCH--
Confidence            34578889999999999887542    6789999999999999999999998 58999998 9999999999999999  


Q ss_pred             HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          161 AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       161 ~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                       .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++
T Consensus        86 -~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  161 (231)
T 3aji_A           86 -DEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFY  161 (231)
T ss_dssp             -HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             -HHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence             9999999999  9999999999999999999999999999999999995 99999999999999999999999999999


Q ss_pred             CCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      |++++          ..+..|.||||+|+..|+.++..
T Consensus       162 g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~  189 (231)
T 3aji_A          162 KASTN----------IQDTEGNTPLHLACDEERVEEAK  189 (231)
T ss_dssp             TCCSC----------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCcc----------ccCCCCCCHHHHHHHCCCHHHHH
Confidence            99999          99999999999999999887543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=6.4e-30  Score=222.96  Aligned_cols=207  Identities=16%  Similarity=0.125  Sum_probs=177.6

Q ss_pred             hhhhcCChhh-hhhcccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHH
Q 039376           56 KLVVGKKEDE-ITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVE  128 (289)
Q Consensus        56 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~  128 (289)
                      ..++..+..+ +..++...+..++..+..+.+   .|+..++.+++++|+++|+++   |..|.||||+|+..|+.++++
T Consensus        29 ~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~  108 (351)
T 3utm_A           29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE  108 (351)
T ss_dssp             HHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHH
Confidence            3334444443 445555566666666655544   588899999999999999987   568999999999999999999


Q ss_pred             HHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC---------------------------
Q 039376          129 RFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD---------------------------  181 (289)
Q Consensus       129 ~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~---------------------------  181 (289)
                      +|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++..+                           
T Consensus       109 ~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~  181 (351)
T 3utm_A          109 LLLK-HGACVNAM-DLWQFTPLHEAASKNR---VEVCSLLLSH--GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS  181 (351)
T ss_dssp             HHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence            9999 58999998 9999999999999999   9999999999  88876544                           


Q ss_pred             ---------------------------CCCCCHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH
Q 039376          182 ---------------------------TSGGTPLTSAAIV---GNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR  231 (289)
Q Consensus       182 ---------------------------~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~  231 (289)
                                                 ..|.||||+|+..   +..+++++|++.|+++ +.++..|+||||+|+..|+.
T Consensus       182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~  260 (351)
T 3utm_A          182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHN  260 (351)
T ss_dssp             HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCH
Confidence                                       4567999999998   5589999999999996 99999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          232 ETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       232 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      +++++|+++|++++          ..+..|.||||+|+..|+.++...+
T Consensus       261 ~~v~~Ll~~ga~~n----------~~d~~g~t~L~~A~~~~~~~~v~~L  299 (351)
T 3utm_A          261 DVMEVLHKHGAKMN----------ALDSLGQTALHRAALAGHLQTCRLL  299 (351)
T ss_dssp             HHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCC----------CcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            99999999999999          9999999999999999998854433

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=3.4e-30  Score=212.92  Aligned_cols=211  Identities=13%  Similarity=0.096  Sum_probs=184.0

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCC-
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVD-  108 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~-  108 (289)
                      ....+...|..+++++|++.+.+......                     ......+.++..++.+++++|+++|.+++ 
T Consensus        12 ~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~---------------------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~   70 (240)
T 3eu9_A           12 DIVKATQYGIYERCRELVEAGYDVRQPDK---------------------ENVTLLHWAAINNRIDLVKYYISKGAIVDQ   70 (240)
T ss_dssp             CHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCChHHHHHHHHcCCCcCCCCC---------------------CCCCHHHHHHHhCCHHHHHHHHHcCCcchh
Confidence            35566778999999999998865432220                     11123456788899999999999998763 


Q ss_pred             ---CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCC
Q 039376          109 ---LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGG  185 (289)
Q Consensus       109 ---~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~  185 (289)
                         ..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|.
T Consensus        71 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~--~~~~~~~~~~g~  143 (240)
T 3eu9_A           71 LGGDLNSTPLHWATRQGHLSMVVQLMK-YGADPSLI-DGEGCSCIHLAAQFGH---TSIVAYLIAK--GQDVDMMDQNGM  143 (240)
T ss_dssp             CBTTTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSC
T ss_pred             hcCCcCCChhHHHHHcCCHHHHHHHHH-cCCCCccc-CCCCCCHHHHHHHcCH---HHHHHHHHhc--CCCccccCCCCC
Confidence               358999999999999999999998 58999988 8999999999999999   9999999999  999999999999


Q ss_pred             CHHHHHHHhCC-HHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccch
Q 039376          186 TPLTSAAIVGN-TKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLK  263 (289)
Q Consensus       186 t~L~~A~~~g~-~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~  263 (289)
                      ||||+|+..+. .+++++|++.|+++ +..+. .|+||||+|+..|+.+++++|+++|++++          ..+..|.|
T Consensus       144 t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t  212 (240)
T 3eu9_A          144 TPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD----------AQNIKGES  212 (240)
T ss_dssp             CHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT----------CBCTTSCB
T ss_pred             cHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCC
Confidence            99999997776 78999999999996 88886 99999999999999999999999999999          99999999


Q ss_pred             HHHHHHHhCCCCcccc
Q 039376          264 LLEILIEFNFLGQYTC  279 (289)
Q Consensus       264 ~l~~a~~~g~~~~~~~  279 (289)
                      |+++|+..|+.++...
T Consensus       213 ~l~~A~~~~~~~~v~~  228 (240)
T 3eu9_A          213 ALDLAKQRKNVWMINH  228 (240)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCcHHHHHH
Confidence            9999999998885443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=4e-30  Score=220.06  Aligned_cols=194  Identities=21%  Similarity=0.210  Sum_probs=125.2

Q ss_pred             cCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhh
Q 039376           60 GKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISE  133 (289)
Q Consensus        60 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~  133 (289)
                      ..+..++++++...+++++..+..+.+   .|+..++.+++++|+++|+++   |..|.||||+|+..|+.+++++|++ 
T Consensus        49 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-  127 (299)
T 1s70_B           49 SSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS-  127 (299)
T ss_dssp             HHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-
Confidence            334444444444444444443333322   244445555555555555443   2344555555555555555555554 


Q ss_pred             CCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCcc--------------------------ccCCCCCCH
Q 039376          134 NPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLE--------------------------ETDTSGGTP  187 (289)
Q Consensus       134 ~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~--------------------------~~~~~g~t~  187 (289)
                      .+++++.. +..|.||||+|+..++   .+++++++... +.+++                          ..+..|.||
T Consensus       128 ~g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~  202 (299)
T 1s70_B          128 QGAHVGAV-NSEGDTPLDIAEEEAM---EELLQNEVNRQ-GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA  202 (299)
T ss_dssp             TTCCTTCC-CTTSCCHHHHCCSHHH---HHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCH
T ss_pred             CCCCCCCc-CCCCCCHHHHHHhcch---HHHHHHHHhhc-CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCH
Confidence            34444444 4455555555555444   44444444322 22221                          134568899


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI  267 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~  267 (289)
                      ||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++
T Consensus       203 L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t~l~~  271 (299)
T 1s70_B          203 LHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDME----------AVNKVGQTAFDV  271 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCTTTS
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHH
Confidence            99999999999999999999995 9999999999999999999999999999999999          888888888888


Q ss_pred             HHH
Q 039376          268 LIE  270 (289)
Q Consensus       268 a~~  270 (289)
                      |.+
T Consensus       272 A~~  274 (299)
T 1s70_B          272 ADE  274 (299)
T ss_dssp             CCS
T ss_pred             HHH
Confidence            754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1e-29  Score=210.58  Aligned_cols=176  Identities=17%  Similarity=0.146  Sum_probs=162.3

Q ss_pred             ccHHHhcCCHHHHHHHHH----cCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC
Q 039376           85 QQIKQVKTSEDWFREMVE----TGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN  157 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~----~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g  157 (289)
                      .+.|+..++.+++++|++    .|.++   |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..+
T Consensus        13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~l~~A~~~~   90 (241)
T 1k1a_A           13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMAL-DRHGQTAAHLACEHR   90 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-CCCCCCHHHHHHHcC
Confidence            345888999999999987    67766   5679999999999999999999999 68999998 999999999999999


Q ss_pred             CchHHHHHHHHHhccCCC----CccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCHH
Q 039376          158 EDEAHRLLDEFLDMISPL----DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCPIHCAARSGHRE  232 (289)
Q Consensus       158 ~~~~~~~v~~Ll~~~~g~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~L~~A~~~~~~~  232 (289)
                      +   .+++++|++.  +.    +++..+..|.||||+|+..|+.+++++|+++|+++ +..+ ..|+||||+|+..|+.+
T Consensus        91 ~---~~~~~~Ll~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~  164 (241)
T 1k1a_A           91 S---PTCLRALLDS--AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLS  164 (241)
T ss_dssp             C---HHHHHHHHHH--SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHH
T ss_pred             C---HHHHHHHHHc--CCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHH
Confidence            9   9999999998  66    78889999999999999999999999999999996 8888 88999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          233 TVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       233 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      ++++|+++|++++          ..+..|.||||+|+..|+.++..
T Consensus       165 ~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          165 MVQLLLQHGANVN----------AQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             HHHHHHHTTCCTT----------CBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHcCCCCC----------CcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999          99999999999999999987543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=1e-29  Score=216.80  Aligned_cols=175  Identities=14%  Similarity=0.128  Sum_probs=161.5

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.++..++.+++++|++.|+++   |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   
T Consensus        63 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~g~t~L~~A~~~~~---  137 (285)
T 3d9h_A           63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-TADWHTPLFNACVSGS---  137 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCC-CTTCCCHHHHHHHHTC---
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCH---
Confidence            34588899999999999999987   6689999999999999999999999 58999999 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++..+ .|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus       138 ~~~v~~Ll~~--g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  213 (285)
T 3d9h_A          138 WDCVNLLLQH--GASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG  213 (285)
T ss_dssp             HHHHHHHHHT--TCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHC--CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence            9999999999  89887654 5999999999999999999999999996 999999999999999999999999999999


Q ss_pred             CCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      ++++          . +..|.||||+|+..|..++...
T Consensus       214 a~~~----------~-~~~g~t~L~~A~~~~~~~~v~~  240 (285)
T 3d9h_A          214 ADVN----------Q-GKGQDSPLHAVVRTASEELACL  240 (285)
T ss_dssp             CCTT----------C-CBTTBCHHHHHHHTTCHHHHHH
T ss_pred             CCCC----------C-CCCCCCHHHHHHHcCCHHHHHH
Confidence            9987          5 7789999999999998875433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.3e-31  Score=231.32  Aligned_cols=217  Identities=13%  Similarity=0.110  Sum_probs=128.3

Q ss_pred             CchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCC----CCCch
Q 039376           38 NEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVD----LGEHP  113 (289)
Q Consensus        38 ~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~----~~g~t  113 (289)
                      |+.++|++|++.|.++..........-.  ....  ...-........+++......++++.|++.|+++|    ..|.|
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~--~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~T  133 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNND--SSNR--NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT  133 (327)
T ss_dssp             HHHHHHHHHHHHHHC-----------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCC
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcc--cccc--cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCc
Confidence            8999999999999665442100000000  0000  00000000011123444444556666666665543    35666


Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHH
Q 039376          114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAI  193 (289)
Q Consensus       114 ~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~  193 (289)
                      |||+|++.|+.++|++||+ .|++++.+ +..|+||||+|+..|+....++++.|++.. .++++.++..|+||||+|+.
T Consensus       134 pLh~Aa~~g~~~~v~~Ll~-~Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~-~~~~~~~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          134 PLHWLTSIANLELVKHLVK-HGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCLILEDSMNRTILHHIII  210 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-GGGGGEECTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhh-hccccCCCCCCCCHHHHHHH
Confidence            6666666666666666666 35666666 666666666666655411124444444441 24466666666666666666


Q ss_pred             ----hCCHHHHHHHHHcCC---------------------------------------------CCCCCCCCCCCCHHHH
Q 039376          194 ----VGNTKAAKILVKYNK---------------------------------------------NLPNMRNRIGQCPIHC  224 (289)
Q Consensus       194 ----~g~~~~v~~Ll~~g~---------------------------------------------~i~~~~~~~g~t~L~~  224 (289)
                          .|+.+++++|++.+.                                             ++ +.++..|+||||+
T Consensus       211 ~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~-n~~d~~G~TpLh~  289 (327)
T 1sw6_A          211 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML-NAQDSNGDTCLNI  289 (327)
T ss_dssp             HHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT-TCCCTTSCCHHHH
T ss_pred             HccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC-CCCCCCCCCHHHH
Confidence                566666666655421                                             43 7899999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          225 AARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       225 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                      |+..|+.+++++|+++|++++          ..+..|+||||+|+.+|
T Consensus       290 A~~~g~~~~v~~Ll~~Gad~~----------~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          290 AARLGNISIVDALLDYGADPF----------IANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHCCHHHHHHHHHTTCCTT----------CCCTTSCCGGGGTCC--
T ss_pred             HHHcCCHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHhcC
Confidence            999999999999999999999          99999999999998665

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=7e-30  Score=209.38  Aligned_cols=189  Identities=15%  Similarity=0.106  Sum_probs=166.2

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCC-c
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGV-K  106 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~-~  106 (289)
                      .....++...|..+++++|++.+.++....                     .......+.++..++.+++++|++++. +
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---------------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~   84 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLLEASADANIQD---------------------NMGRTPLHAAVSADAQGVFQILIRNRATD   84 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------------------TTSCCHHHHHHHTTCHHHHHHHHHBTTSC
T ss_pred             CchHHHHHHcCCHHHHHHHHHcCCCCCCcC---------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            345666778889999999998876543322                     011223456788899999999999987 4


Q ss_pred             C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC
Q 039376          107 V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS  183 (289)
Q Consensus       107 ~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~  183 (289)
                      +   +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~  157 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKN--GANKDMQNNR  157 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTT
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCcCc-CCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCC
Confidence            4   5689999999999999999999999 68999998 9999999999999999   9999999999  9999999999


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      |.||||+|+..|+.+++++|+++|+++ +.++..|+||+++|+..++.+++++|+++|+...
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            999999999999999999999999995 9999999999999999999999999999999865

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.8e-30  Score=207.24  Aligned_cols=153  Identities=22%  Similarity=0.204  Sum_probs=145.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |..|.||||+|+..|+.+++++|++. +++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|.||
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNR---LGIAEKLLSK--GSNVNTKDFSGKTP  104 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCC---HHHHHHHHHC--CCCCCCCCCCCCcH
Confidence            77899999999999999999999995 7888888 8999999999999999   9999999999  99999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI  267 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~  267 (289)
                      ||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~  173 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADIS----------ARDLTGLTAEAS  173 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CBCTTSCBHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCCHHHH
Confidence            99999999999999999999995 9999999999999999999999999999999999          999999999999


Q ss_pred             HHHhCCCCccc
Q 039376          268 LIEFNFLGQYT  278 (289)
Q Consensus       268 a~~~g~~~~~~  278 (289)
                      |+..|+.++..
T Consensus       174 A~~~~~~~~v~  184 (192)
T 2rfm_A          174 ARIFGRQEVIK  184 (192)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHhCcHHHHH
Confidence            99999887543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=5.8e-30  Score=200.78  Aligned_cols=150  Identities=14%  Similarity=0.168  Sum_probs=129.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT  189 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~  189 (289)
                      .|.||||+|++.|+.+++++|++. +.+++.+ +..|.||||+|+..|+   .+++++|++.  |++++..+..|.||||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~   74 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQ---IAVVEFLLQN--GADPQLLGKGRESALS   74 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCC---HHHHHHHHHc--CCCCCCcCCCCCcHHH
Confidence            467889999999999999888885 6778887 8888899999998888   8899998888  8888888888889999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHH
Q 039376          190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILI  269 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~  269 (289)
                      +|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++|+
T Consensus        75 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~l~~A~  143 (167)
T 3v31_A           75 LACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT----------IETDSGYNSMDLAV  143 (167)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHHH
Confidence            999888888999999888885 8888888899999998889999999998888888          88888889999988


Q ss_pred             HhCCCCcc
Q 039376          270 EFNFLGQY  277 (289)
Q Consensus       270 ~~g~~~~~  277 (289)
                      ..|+.++.
T Consensus       144 ~~~~~~~~  151 (167)
T 3v31_A          144 ALGYRSVQ  151 (167)
T ss_dssp             HHTCHHHH
T ss_pred             HcCcHHHH
Confidence            88887743

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.8e-30  Score=217.66  Aligned_cols=178  Identities=15%  Similarity=0.093  Sum_probs=141.3

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC-----------CCCCchHHHHHHHcCCHH-HHHHHHhhCCCCcccccCCCCChHHHH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV-----------DLGEHPQLRRALVRKDWK-EVERFISENPDTLYAKFTESCGTLFHS  152 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~-----------~~~g~t~Lh~A~~~g~~~-~v~~ll~~~~~~~~~~~~~~~~t~Lh~  152 (289)
                      ...|+..|+.+++++|++.|.+.           +..|.||||+|+..+..+ ++++|+. .|++++.+ +..|+||||+
T Consensus        15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~-~Gadvn~~-d~~G~TpLh~   92 (269)
T 4b93_B           15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA-SGLGVNVT-SQDGSSPLHV   92 (269)
T ss_dssp             HHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCC-CTTSCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHH-CCCCCCCc-CCCCCCHHHH
Confidence            34588899999999999988742           446889999999988764 6777787 69999999 9999999999


Q ss_pred             HHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 039376          153 MANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE  232 (289)
Q Consensus       153 A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~  232 (289)
                      |+..|+   .+++++|++.  +++++.++..|.||+++|+..++.+++++|++.|+++ +.+|..|+||||+|+..|+.+
T Consensus        93 A~~~g~---~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B           93 AALHGR---ADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             HHHTTC---TTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGG
T ss_pred             HHHcCc---HHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHH
Confidence            999999   9999999999  9999999999999999999999999999999999995 999999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          233 TVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       233 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      ++++|+++|++++          ..+..|.||||+|+..|+.++...+
T Consensus       167 ~v~~Ll~~gadvn----------~~~~~g~t~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          167 LVALLLQHGASIN----------ASNNKGNTALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             GHHHHHHTTCCTT----------CBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCCCC----------ccccCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999          9999999999999999998854443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2e-30  Score=217.40  Aligned_cols=177  Identities=11%  Similarity=0.069  Sum_probs=155.5

Q ss_pred             cHHHhcCCHH----HHHHHHHcCCcCC-------CCCchHHHHHHHc---CCHHHHHHHHhhCCCCcccc----------
Q 039376           86 QIKQVKTSED----WFREMVETGVKVD-------LGEHPQLRRALVR---KDWKEVERFISENPDTLYAK----------  141 (289)
Q Consensus        86 ~~~~~~~~~~----~~~~Ll~~g~~~~-------~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~----------  141 (289)
                      +.|+..++.+    ++++|++.|++++       ..|.||||+|+..   |+.+++++|++. +++++..          
T Consensus         7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~   85 (256)
T 2etb_A            7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTD   85 (256)
T ss_dssp             HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhccccccc
Confidence            4466667775    5677778888754       4899999999999   999999999984 5555422          


Q ss_pred             cCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC-------------CCCHHHHHHHhCCHHHHHHHHH---
Q 039376          142 FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS-------------GGTPLTSAAIVGNTKAAKILVK---  205 (289)
Q Consensus       142 ~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~-------------g~t~L~~A~~~g~~~~v~~Ll~---  205 (289)
                      .+..|.||||+|+..|+   .+++++|++.  |++++.++..             |.||||+|+..|+.+++++|++   
T Consensus        86 ~d~~g~t~L~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRS---LQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             TTTTTCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            03679999999999999   9999999999  9999999886             9999999999999999999999   


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHhcCCCc-------ccccccCCCCcccccccchHHHHHH
Q 039376          206 YNKNLPNMRNRIGQCPIHCAAR--SGHRE-------TVEYLLSVTGVE-------EEDSHEKYSNPFAGECGLKLLEILI  269 (289)
Q Consensus       206 ~g~~i~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~~~~~~~~~~g~~~l~~a~  269 (289)
                      +|+++ +.+|..|+||||+|+.  .++.+       ++++|+++|+++       +          ..+..|.||||+|+
T Consensus       161 ~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~----------~~d~~g~tpL~~A~  229 (256)
T 2etb_A          161 QPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE----------ISNHQGLTPLKLAA  229 (256)
T ss_dssp             CCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG----------CCCTTSCCHHHHHH
T ss_pred             cCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc----------ccCCCCCCHHHHHH
Confidence            99995 9999999999999999  88988       999999999999       7          89999999999999


Q ss_pred             HhCCCCcccc
Q 039376          270 EFNFLGQYTC  279 (289)
Q Consensus       270 ~~g~~~~~~~  279 (289)
                      ..|+.++...
T Consensus       230 ~~g~~~~v~~  239 (256)
T 2etb_A          230 KEGKIEIFRH  239 (256)
T ss_dssp             HTTCHHHHHH
T ss_pred             HhCCHHHHHH
Confidence            9999885443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.7e-30  Score=218.51  Aligned_cols=181  Identities=14%  Similarity=0.173  Sum_probs=163.1

Q ss_pred             ccccHHHhcCCHHHHHHHHHcCCc-----CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHH---
Q 039376           83 ERQQIKQVKTSEDWFREMVETGVK-----VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMA---  154 (289)
Q Consensus        83 ~~~~~~~~~~~~~~~~~Ll~~g~~-----~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~---  154 (289)
                      ...+.+...++.+.++.+++.+.+     .|..|.||||+|++.|+.+++++|++.+..+++.. +..|.||||+|+   
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTALAT  156 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGGCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHHHH
Confidence            344678888888888888776554     27799999999999999999999999543488888 999999999999   


Q ss_pred             --hcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 039376          155 --NINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE  232 (289)
Q Consensus       155 --~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~  232 (289)
                        ..++   .+++++|++.  |...+..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+
T Consensus       157 ~~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~  230 (276)
T 4hbd_A          157 LKTQDD---IETVLQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKE  230 (276)
T ss_dssp             CCSHHH---HHHHHHHHHH--SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred             hhhhhh---HHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHH
Confidence              5577   9999999999  8999999999999999999999999999999999995 999999999999999999999


Q ss_pred             HHHHHHh-cCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          233 TVEYLLS-VTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       233 ~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      ++++|++ +|++++          ..+..|.|||++|+..|+.++...+
T Consensus       231 iv~~Ll~~~gad~~----------~~d~~g~TpL~~A~~~g~~~iv~~L  269 (276)
T 4hbd_A          231 IAGLLLAVPSCDIS----------LTDRDGSTALMVALDAGQSEIASML  269 (276)
T ss_dssp             HHHHHHTSTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHhcCCCCCc----------CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999 999999          9999999999999999998865544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.1e-29  Score=198.14  Aligned_cols=151  Identities=25%  Similarity=0.256  Sum_probs=120.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHH
Q 039376          109 LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPL  188 (289)
Q Consensus       109 ~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L  188 (289)
                      ..+.++|++|++.|+.+++++|++ .+.+++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|.|||
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L   84 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-DASGWTPLHLAAFNGH---LEIVEVLLKN--GADVNAVDHAGMTPL   84 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCccCCCCCCHH
Confidence            355678888888888888888887 47777777 7788888888888888   8888888887  788888888888888


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHH
Q 039376          189 TSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEIL  268 (289)
Q Consensus       189 ~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a  268 (289)
                      |+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++|
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~t~l~~A  153 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN----------AQDKFGKTAFDIS  153 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHH
Confidence            8888888888888888888885 7788888888888888888888888888888887          7777888888888


Q ss_pred             HHhCCCCcc
Q 039376          269 IEFNFLGQY  277 (289)
Q Consensus       269 ~~~g~~~~~  277 (289)
                      +..|+.++.
T Consensus       154 ~~~~~~~~~  162 (169)
T 2y1l_E          154 IDNGNEDLA  162 (169)
T ss_dssp             HHTTCHHHH
T ss_pred             HHhCCHHHH
Confidence            888776643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2e-29  Score=198.71  Aligned_cols=152  Identities=16%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             cHHHhcCCHHHHHHHHHcCCc-C---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           86 QIKQVKTSEDWFREMVETGVK-V---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~-~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      +.++..++.++++.|++.+.. +   +..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+   
T Consensus         7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---   81 (172)
T 3v30_A            7 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHIL-AKERESALSLASTGGY---   81 (172)
T ss_dssp             HHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-CTTCCCHHHHHHHTTC---
T ss_pred             HHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhh-cccCCCHHHHHHHCCC---
Confidence            345666667777777766654 2   4566677777777777777777666 36666666 6667777777777777   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus        82 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           82 TDIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             HHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            7777777766  6677766777777777777777777777777777764 666677777777777777777777777777


Q ss_pred             CCcc
Q 039376          242 GVEE  245 (289)
Q Consensus       242 ~~~~  245 (289)
                      ++..
T Consensus       159 ~~~~  162 (172)
T 3v30_A          159 LKLF  162 (172)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            6665

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=7.3e-31  Score=217.38  Aligned_cols=182  Identities=15%  Similarity=0.136  Sum_probs=105.2

Q ss_pred             hhhhhcCChhhhhhcccCCCC----ccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCH
Q 039376           55 SKLVVGKKEDEITEMKPANDP----IIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDW  124 (289)
Q Consensus        55 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~  124 (289)
                      ...++..+..+++..++..+.    .++..+..+.+   .++..++.+++++|+++|+++   +..|.||||+|++.|+.
T Consensus        12 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   91 (236)
T 1ikn_D           12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL   91 (236)
T ss_dssp             THHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             hHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            344444555555555544332    34444333333   355556666666666666654   34566666666666666


Q ss_pred             HHHHHHHhhCCCC------cccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC-CCCCHHHHHHHhCCH
Q 039376          125 KEVERFISENPDT------LYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT-SGGTPLTSAAIVGNT  197 (289)
Q Consensus       125 ~~v~~ll~~~~~~------~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~-~g~t~L~~A~~~g~~  197 (289)
                      +++++|++. +.+      ++.. +..|.||||+|+..|+   .+++++|++.  |++++.++. .|.||||+|+..|+.
T Consensus        92 ~~v~~Ll~~-~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~~~~  164 (236)
T 1ikn_D           92 ASVGVLTQS-CTTPHLHSILKAT-NYNGHTCLHLASIHGY---LGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNP  164 (236)
T ss_dssp             HHHHHHHHS-TTTTSSSCGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHhc-ccchhHHHHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            666666653 322      2333 5556666666666666   6666666666  666666665 666666666666666


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc
Q 039376          198 KAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVE  244 (289)
Q Consensus       198 ~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  244 (289)
                      +++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++.
T Consensus       165 ~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          165 DLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             HHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence            6666666666663 666666666666666666666666666666654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.4e-29  Score=194.49  Aligned_cols=147  Identities=17%  Similarity=0.170  Sum_probs=132.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA  191 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A  191 (289)
                      .++||.|++.|+.+++++|++. +.+++ . +..|.||||+|+..|+   .+++++|++.  |++++.++..|+||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGH---FSTTEVLLRA--GVSRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTC---HHHHHHHHTT--TCCTTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHc-CCCCC-c-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence            5799999999999999999985 56554 4 7789999999999999   9999999998  899999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHh
Q 039376          192 AIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEF  271 (289)
Q Consensus       192 ~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~  271 (289)
                      +..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++|+..
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVH----------TQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHT
T ss_pred             HHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------ccCCCCCCHHHHHHHc
Confidence            9999999999999999995 8999999999999999999999999999999998          8899999999999999


Q ss_pred             CCCCcc
Q 039376          272 NFLGQY  277 (289)
Q Consensus       272 g~~~~~  277 (289)
                      |+.++.
T Consensus       144 ~~~~i~  149 (153)
T 1awc_B          144 GNEDLA  149 (153)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            987753

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=3.7e-29  Score=197.12  Aligned_cols=155  Identities=14%  Similarity=0.135  Sum_probs=136.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHH
Q 039376          111 EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTS  190 (289)
Q Consensus       111 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~  190 (289)
                      +.||||.|++.|+.+++++|++.+...++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   75 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGE---IETVRFLLEW--GADPHILAKERESALSL   75 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCchhhcccCCCHHHH
Confidence            4689999999999999999999655557777 8999999999999999   9999999999  99999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc-cccccCCCCcc-cccccchHHHHH
Q 039376          191 AAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE-EDSHEKYSNPF-AGECGLKLLEIL  268 (289)
Q Consensus       191 A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~-~~~~g~~~l~~a  268 (289)
                      |+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ .+....+++.. ........+.++
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L  154 (172)
T 3v30_A           76 ASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI  154 (172)
T ss_dssp             HHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence            99999999999999999996 9999999999999999999999999999999999 55566666643 333445666676


Q ss_pred             HHhC
Q 039376          269 IEFN  272 (289)
Q Consensus       269 ~~~g  272 (289)
                      ...|
T Consensus       155 ~~~~  158 (172)
T 3v30_A          155 ENHI  158 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=4.8e-29  Score=194.38  Aligned_cols=151  Identities=18%  Similarity=0.177  Sum_probs=140.5

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.++..++.+++++|+++|+++   +..|.||||+|+. |+.+++++|++ .+++++.+ +..|.||||+|+..|+   
T Consensus         9 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---   82 (162)
T 1ihb_A            9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLK-DRTGFAVIHDAARAGF---   82 (162)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCC---
Confidence            34688889999999999999887   5689999999999 99999999999 58999998 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|++..+..+..|+||||+|+..|+.+++++|+++|
T Consensus        83 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           83 LDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999  99999999999999999999999999999999999844899999999999999999999999999999


Q ss_pred             CC
Q 039376          242 GV  243 (289)
Q Consensus       242 ~~  243 (289)
                      ++
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.7e-28  Score=197.91  Aligned_cols=184  Identities=13%  Similarity=0.123  Sum_probs=159.7

Q ss_pred             hhhhhhcCCchHHHHHHHhccC-CCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC-
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFA-QPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV-  107 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~-  107 (289)
                      ....+...|..+++++|+..+. +.....                     .......+.++..++.+++++|+++|+++ 
T Consensus         8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   66 (201)
T 3hra_A            8 ALLEAANQRDTKKVKEILQDTTYQVDEVD---------------------TEGNTPLNIAVHNNDIEIAKALIDRGADIN   66 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHTCTTCCTTCCC---------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHhccHHHHHHHHHcCCCCCCCCC---------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4555667788888888887664 221111                     01122345688889999999999999987 


Q ss_pred             --CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC-CCccccCCCC
Q 039376          108 --DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP-LDLEETDTSG  184 (289)
Q Consensus       108 --~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g-~~~~~~~~~g  184 (289)
                        +..|.||||+|+..|+.+++++|++..+.+++.+ +..|.||||+|+..|+   .+++++|++.  | ++++.++..|
T Consensus        67 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~~g  140 (201)
T 3hra_A           67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLED--GREDIDFQNDFG  140 (201)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHHH--CCCCTTCCCTTS
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc-cCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCcCCCCCCC
Confidence              5578999999999999999999997788899988 9999999999999999   9999999999  7 8999999999


Q ss_pred             CCHHHHHHHhCC-----HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          185 GTPLTSAAIVGN-----TKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       185 ~t~L~~A~~~g~-----~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .||||+|+..+.     .+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus       141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          141 YTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999999998     99999999999995 999999999999999999999999999987

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.5e-28  Score=192.04  Aligned_cols=149  Identities=20%  Similarity=0.283  Sum_probs=140.6

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.|+..++.+++++|+++|+++   |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+   
T Consensus        18 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---   92 (169)
T 2y1l_E           18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAV-DHAGMTPLRLAALFGH---   92 (169)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCCHHHHHHHcCC---
Confidence            34588999999999999999987   5689999999999999999999999 58999998 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus        93 ~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           93 LEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999  9999999999999999999999999999999999995 999999999999999999999999999886

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.3e-30  Score=214.71  Aligned_cols=183  Identities=13%  Similarity=0.115  Sum_probs=152.8

Q ss_pred             cHHHhcCCHHH----HHHHHHcCCcCC-------CCCchHHHHHH---HcCCHHHHHHHHhhCCCC-----------ccc
Q 039376           86 QIKQVKTSEDW----FREMVETGVKVD-------LGEHPQLRRAL---VRKDWKEVERFISENPDT-----------LYA  140 (289)
Q Consensus        86 ~~~~~~~~~~~----~~~Ll~~g~~~~-------~~g~t~Lh~A~---~~g~~~~v~~ll~~~~~~-----------~~~  140 (289)
                      +.++..++.+.    +++|++.|++++       ..|.||||+|+   +.|+.+++++|++. +++           ...
T Consensus        10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~   88 (260)
T 3jxi_A           10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRD   88 (260)
T ss_dssp             HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccc
Confidence            44666777774    455555888774       56999999999   78999999999985 432           333


Q ss_pred             ccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC--------------CCCCCHHHHHHHhCCHHHHHHHHH-
Q 039376          141 KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD--------------TSGGTPLTSAAIVGNTKAAKILVK-  205 (289)
Q Consensus       141 ~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~--------------~~g~t~L~~A~~~g~~~~v~~Ll~-  205 (289)
                      . +..|.||||+|+..|+   .+++++|++.  |++++.++              ..|.||||+|+..|+.+++++|++ 
T Consensus        89 ~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           89 V-YYRGQTALHIAIERRC---KHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             S-SEESBCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             c-ccCCCCHHHHHHHcCC---HHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            3 4589999999999999   9999999999  99999998              689999999999999999999999 


Q ss_pred             --cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376          206 --YNKNLPNMRNRIGQCPIHCAARSGH---------RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL  274 (289)
Q Consensus       206 --~g~~i~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~  274 (289)
                        +|+++ +.+|..|+||||+|+..++         .+++++|+++|++++...   ......+..|.||||+|+..|+.
T Consensus       163 ~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~---~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          163 GHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT---NLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             SSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC---CGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             cccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc---chhhcccCCCCCHHHHHHHcCCH
Confidence              99995 9999999999999998887         799999999999983000   00017899999999999999998


Q ss_pred             Ccccc
Q 039376          275 GQYTC  279 (289)
Q Consensus       275 ~~~~~  279 (289)
                      ++...
T Consensus       239 ~~v~~  243 (260)
T 3jxi_A          239 GIFQH  243 (260)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            85443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=9.6e-30  Score=199.12  Aligned_cols=151  Identities=21%  Similarity=0.209  Sum_probs=133.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |..|.||||.|++.|+.+++++|++..+.+++.. +..|.||||+|+..|+   .+++++|++.  |++++.++..|+||
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~   78 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNR---VSVVEYLLQH--GADVHAKDKGGLVP   78 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcCh---HHHHHHHHhc--CCCCCccCCCCCCH
Confidence            5677899999999999999999988766677776 7888999999999999   9999999998  89999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEI  267 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~  267 (289)
                      ||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~  147 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT----------KKNRDGNTPLDL  147 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCTGGG
T ss_pred             HHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCCChhHh
Confidence            99999999999999999999995 8999999999999999999999999999999998          888888888888


Q ss_pred             HHHhCCCCc
Q 039376          268 LIEFNFLGQ  276 (289)
Q Consensus       268 a~~~g~~~~  276 (289)
                      |.. |..++
T Consensus       148 a~~-~~~~i  155 (165)
T 3twr_A          148 VKD-GDTDI  155 (165)
T ss_dssp             SCT-TCHHH
T ss_pred             Hhc-CChHH
Confidence            765 55554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=4.5e-29  Score=212.76  Aligned_cols=203  Identities=12%  Similarity=0.048  Sum_probs=163.0

Q ss_pred             hhhhcCChhhhhhcccCCCCccchhc-cccccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHH
Q 039376           56 KLVVGKKEDEITEMKPANDPIIEVKS-HERQQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFI  131 (289)
Q Consensus        56 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll  131 (289)
                      ..++..+..++++++...+++++..+ ....+.|+..++.+++++|+++|+++   |..|.||||+|+..|+.+++++|+
T Consensus        36 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  115 (285)
T 3kea_A           36 YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV  115 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            33444444444444444444443332 12334577889999999999999987   568999999999999999999999


Q ss_pred             hhCCCCcccccCCCC-ChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Q 039376          132 SENPDTLYAKFTESC-GTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNL  210 (289)
Q Consensus       132 ~~~~~~~~~~~~~~~-~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i  210 (289)
                      +. +++++.+ +..| .||||+|+..|+   .+++++|++.  |++.... ..|.||||+|+..|+.+++++|+++|+++
T Consensus       116 ~~-ga~~~~~-~~~g~~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~  187 (285)
T 3kea_A          116 KK-NWRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSE--IPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTST  187 (285)
T ss_dssp             HH-CGGGGGC-SSSGGGSHHHHHHHTTC---HHHHHHHHTT--SCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hc-CCCCCcc-CCCCCCCHHHHHHHcCC---HHHHHHHHhC--CCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCC
Confidence            95 8999998 8888 899999999999   9999999999  7766322 28899999999999999999999999995


Q ss_pred             CCCCCCCCCCH-HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          211 PNMRNRIGQCP-IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       211 ~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                       +.++..|+|| ||+|+..|+.+++++|+++|++++....     ..........+.+++++|
T Consensus       188 -n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          188 -NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             -CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHH
T ss_pred             -CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcC
Confidence             9999999998 9999999999999999999999981111     122334567777777776

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=2.2e-29  Score=221.67  Aligned_cols=214  Identities=13%  Similarity=0.046  Sum_probs=175.3

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHc----
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVET----  103 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~----  103 (289)
                      .....++...|+.++|++|++.++.....                       ......+.++..++.+++++|++.    
T Consensus        54 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-----------------------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  110 (364)
T 3ljn_A           54 CTALHLACKFGCVDTAKYLASVGEVHSLW-----------------------HGQKPIHLAVMANKTDLVVALVEGAKER  110 (364)
T ss_dssp             CCHHHHHHHHCCHHHHHHHHHHCCCCCCB-----------------------TTBCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCcccc-----------------------CCCCHHHHHHHcCCHHHHHHHHHhcccc
Confidence            34567778889999999999998733221                       012334568888999999999998    


Q ss_pred             CCcC--------------------CCCCchHHHHHHHcC--CHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376          104 GVKV--------------------DLGEHPQLRRALVRK--DWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus       104 g~~~--------------------~~~g~t~Lh~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      |+++                    +..|.||||+|+..|  +.+++++|++. +++++.+ +..|.||||+|+..|+   
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~L~~A~~~g~---  185 (364)
T 3ljn_A          111 GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAK-DKADETPLMRAMEFRN---  185 (364)
T ss_dssp             TCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHTTC---
T ss_pred             CCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---
Confidence            6543                    337999999999999  99999999995 8999999 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCC-----ccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 039376          162 HRLLDEFLDMISPLD-----LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY  236 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~  236 (289)
                      .+++++|++.  |++     ++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++
T Consensus       186 ~~~v~~Ll~~--g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~  262 (364)
T 3ljn_A          186 REALDLMMDT--VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKE  262 (364)
T ss_dssp             HHHHHHHHHH--CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHhc--ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhChHHHHHH
Confidence            9999999998  888     9999999999999999999999999999999995 9999999999999999999999999


Q ss_pred             HHhcCCCcc-ccc-ccCCCCcccccccchHHHHHHHhC
Q 039376          237 LLSVTGVEE-EDS-HEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       237 Ll~~g~~~~-~~~-~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                      |+++|++++ ... .........+..++++++.|+..|
T Consensus       263 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP  300 (364)
T ss_dssp             HHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred             HHHcCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence            999998875 111 111111234455566654444443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=1e-28  Score=203.72  Aligned_cols=150  Identities=19%  Similarity=0.141  Sum_probs=140.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCc-----cccCCCC
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDL-----EETDTSG  184 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~-----~~~~~~g  184 (289)
                      .|.||||+|++.|+.+++++|++..+.+++.+ +..|.||||+|+..|+   .+++++|++.  |+++     +.++..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--~~~~~~~~~~~~~~~g   75 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDN---LEAAMVLMEA--APELVFEPMTSELYEG   75 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--CGGGGGCCCCSTTTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CchhccccccccCCCC
Confidence            58999999999999999999999669999999 9999999999999999   9999999999  7776     6677899


Q ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-------------CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccC
Q 039376          185 GTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR-------------IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEK  251 (289)
Q Consensus       185 ~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~-------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  251 (289)
                      .||||+|+..|+.+++++|+++|+++ +..+.             .|+||||+|+..|+.+++++|+++|++++      
T Consensus        76 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------  148 (232)
T 2rfa_A           76 QTALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR------  148 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT------
T ss_pred             cCHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------
Confidence            99999999999999999999999995 77765             79999999999999999999999999999      


Q ss_pred             CCCcccccccchHHHHHHHhCCCCc
Q 039376          252 YSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       252 ~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                          ..+..|.||||+|+..|..++
T Consensus       149 ----~~d~~g~t~L~~A~~~~~~~~  169 (232)
T 2rfa_A          149 ----AQDSLGNTVLHILILQPNKTF  169 (232)
T ss_dssp             ----CCCTTSCCHHHHHHTCSCHHH
T ss_pred             ----CCCCCCCCHHHHHHHcCChHH
Confidence                999999999999999998774

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=5.2e-29  Score=194.18  Aligned_cols=151  Identities=19%  Similarity=0.227  Sum_probs=141.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT  189 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~  189 (289)
                      ...||||+|++.|+.+++++|++ .+.+++.+ +..|.||||+|+. |+   .+++++|++.  |++++.++..|.||||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~   75 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMKL-GN---PEIARRLLLR--GANPDLKDRTGFAVIH   75 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCCS-SC---HHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-CccCccHHHHHHc-Cc---HHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence            45799999999999999999998 68999988 9999999999999 99   9999999999  9999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-cccccccCCCCcccccccchHHHHH
Q 039376          190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV-EEEDSHEKYSNPFAGECGLKLLEIL  268 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~~~l~~a  268 (289)
                      +|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++ ++          ..+..|.|||++|
T Consensus        76 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~~g~t~l~~A  144 (162)
T 1ihb_A           76 DAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG----------HRNHKGDTACDLA  144 (162)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT----------CCCTTSCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC----------CcCCCCCcHHHHH
Confidence            999999999999999999995 99999999999999999999999999999998 47          8899999999999


Q ss_pred             HHhCCCCcccc
Q 039376          269 IEFNFLGQYTC  279 (289)
Q Consensus       269 ~~~g~~~~~~~  279 (289)
                      +..|+.++...
T Consensus       145 ~~~~~~~~~~~  155 (162)
T 1ihb_A          145 RLYGRNEVVSL  155 (162)
T ss_dssp             HHTTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            99998875443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=8.4e-29  Score=191.85  Aligned_cols=149  Identities=24%  Similarity=0.267  Sum_probs=133.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHH
Q 039376          111 EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTS  190 (289)
Q Consensus       111 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~  190 (289)
                      |.||||+|++.|+.+++++|++..+.+++.. +..|.||||+ +..|+   .+++++|++.  |++++.++..|.||||+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGS---TAIALELLKQ--GASPNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCC---HHHHHHHHHC--CCCCCCcCCCCCCHHHH
Confidence            5689999999999999999998645578887 8889999999 88999   9999999998  89999999999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHH
Q 039376          191 AAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIE  270 (289)
Q Consensus       191 A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~  270 (289)
                      |+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++ ++++          ..+..|.|||++|+.
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~----------~~~~~g~t~l~~A~~  142 (156)
T 1bd8_A           75 AARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH----------RRDARGLTPLELALQ  142 (156)
T ss_dssp             HHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT----------CCCTTSCCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC----------CcCCCCCCHHHHHHH
Confidence            99999999999999999995 89999999999999999999999999988 8888          888999999999999


Q ss_pred             hCCCCccc
Q 039376          271 FNFLGQYT  278 (289)
Q Consensus       271 ~g~~~~~~  278 (289)
                      .|+.++..
T Consensus       143 ~~~~~~v~  150 (156)
T 1bd8_A          143 RGAQDLVD  150 (156)
T ss_dssp             SCCHHHHH
T ss_pred             cCcHHHHH
Confidence            98877543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=3e-29  Score=207.63  Aligned_cols=172  Identities=14%  Similarity=0.085  Sum_probs=151.3

Q ss_pred             ccHHHhcCCHHHHHHHHHcCC----cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC
Q 039376           85 QQIKQVKTSEDWFREMVETGV----KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN  157 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~----~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g  157 (289)
                      .+.|+..++.++++.|++.+.    ++   +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|
T Consensus        12 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~   89 (236)
T 1ikn_D           12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-DFRGNTPLHLACEQG   89 (236)
T ss_dssp             THHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-CTTCCCHHHHHHHHT
T ss_pred             hHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcC
Confidence            456777888888888887764    33   5679999999999999999999998 68999998 999999999999999


Q ss_pred             CchHHHHHHHHHhccCCCC------ccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCC
Q 039376          158 EDEAHRLLDEFLDMISPLD------LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR-IGQCPIHCAARSGH  230 (289)
Q Consensus       158 ~~~~~~~v~~Ll~~~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A~~~~~  230 (289)
                      +   .+++++|++.  +.+      ++..+..|.||||+|+..|+.+++++|+++|+++ +.++. .|+||||+|+..|+
T Consensus        90 ~---~~~v~~Ll~~--~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~  163 (236)
T 1ikn_D           90 C---LASVGVLTQS--CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQN  163 (236)
T ss_dssp             C---HHHHHHHHHS--TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTC
T ss_pred             C---HHHHHHHHhc--ccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence            9   9999999998  665      5778889999999999999999999999999996 88887 99999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376          231 RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL  274 (289)
Q Consensus       231 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~  274 (289)
                      .+++++|+++|++++          ..+..|.|||++|+..|+.
T Consensus       164 ~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~A~~~~~~  197 (236)
T 1ikn_D          164 PDLVSLLLKCGADVN----------RVTYQGYSPYQLTWGRPST  197 (236)
T ss_dssp             HHHHHHHHTTTCCSC----------CCCTTCCCGGGGCTTSSCH
T ss_pred             HHHHHHHHHcCCCCC----------cccCCCCCHHHHHHccCch
Confidence            999999999999999          7777788887777766653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=2.4e-29  Score=222.46  Aligned_cols=196  Identities=18%  Similarity=0.208  Sum_probs=165.8

Q ss_pred             hhhhcccCCCCccchhc-ccccc---HHHhcCCHHHHHHHH--------HcCCcC---CCCCchHHHHHHHcCCHHHHHH
Q 039376           65 EITEMKPANDPIIEVKS-HERQQ---IKQVKTSEDWFREMV--------ETGVKV---DLGEHPQLRRALVRKDWKEVER  129 (289)
Q Consensus        65 ~~~~~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~Ll--------~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~  129 (289)
                      ++++++..  ..++..+ ..+.+   .|+..++.+++++|+        +.|+++   |..|.||||+|+..|+.+++++
T Consensus       107 ~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~  184 (373)
T 2fo1_E          107 AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY  184 (373)
T ss_dssp             CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHH
Confidence            45555543  2344444 23333   466667766655554        889887   5689999999999999999999


Q ss_pred             HHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC---CCccccCCCCCCHHHHHHHhC---CHHHHHHH
Q 039376          130 FISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP---LDLEETDTSGGTPLTSAAIVG---NTKAAKIL  203 (289)
Q Consensus       130 ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g---~~~~~~~~~g~t~L~~A~~~g---~~~~v~~L  203 (289)
                      |++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  +   ++++..+..|.||||+|+..+   +.+++++|
T Consensus       185 Ll~-~ga~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~--~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~L  257 (373)
T 2fo1_E          185 LMK-AGADPTIY-NKSERSALHQAAANRD---FGMMVYMLNS--TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL  257 (373)
T ss_dssp             HHH-TTCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTS--HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred             HHH-CCCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhc--CccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence            999 68999998 9999999999999999   9999999998  6   789999999999999999998   89999999


Q ss_pred             HHcCCCCCCC--------CCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376          204 VKYNKNLPNM--------RNRIGQCPIHCAARSGHRETVEYLLSVT-GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL  274 (289)
Q Consensus       204 l~~g~~i~~~--------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~  274 (289)
                      +++|+++ +.        .+..|+||||+|+..|+.+++++|+++| ++++          ..+..|.||||+|+..|+.
T Consensus       258 l~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n----------~~d~~g~TpL~~A~~~g~~  326 (373)
T 2fo1_E          258 VEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD----------KQDEDGKTPIMLAAQEGRI  326 (373)
T ss_dssp             HHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT----------CCCTTCCCHHHHHHHHTCH
T ss_pred             HHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc----------CcCCCCCCHHHHHHHcCCH
Confidence            9999995 65        5679999999999999999999999876 9999          9999999999999999998


Q ss_pred             Cccccc
Q 039376          275 GQYTCN  280 (289)
Q Consensus       275 ~~~~~~  280 (289)
                      ++...+
T Consensus       327 ~iv~~L  332 (373)
T 2fo1_E          327 EVVMYL  332 (373)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            854443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=2.9e-29  Score=212.26  Aligned_cols=183  Identities=12%  Similarity=0.143  Sum_probs=154.2

Q ss_pred             cHHHhcCCHHHHHHHHH----cCCcC-------CCCCchHHHHHHHc---CCHHHHHHHHhhCCCC-------ccc----
Q 039376           86 QIKQVKTSEDWFREMVE----TGVKV-------DLGEHPQLRRALVR---KDWKEVERFISENPDT-------LYA----  140 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~----~g~~~-------~~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~-------~~~----  140 (289)
                      +.|+..++.++++.|++    .++++       +..|.||||+|+..   |+.+++++|++. +++       ++.    
T Consensus        18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~   96 (273)
T 2pnn_A           18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTD   96 (273)
T ss_dssp             HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCS
T ss_pred             HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhccccc
Confidence            45778888888877776    45443       56899999999987   999999999985 433       122    


Q ss_pred             ccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC--------------CCCCHHHHHHHhCCHHHHHHHHH-
Q 039376          141 KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT--------------SGGTPLTSAAIVGNTKAAKILVK-  205 (289)
Q Consensus       141 ~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~--------------~g~t~L~~A~~~g~~~~v~~Ll~-  205 (289)
                      + +..|.||||+|+..|+   .+++++|++.  |++++.++.              .|.||||+|+..|+.+++++|++ 
T Consensus        97 ~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           97 S-YYKGQTALHIAIERRN---MTLVTLLVEN--GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             T-TTTTCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             c-cCCCCCHHHHHHHcCC---HHHHHHHHHC--CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            3 5689999999999999   9999999999  999999987              79999999999999999999999 


Q ss_pred             --cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCC
Q 039376          206 --YNKNLPNMRNRIGQCPIHCAARSGH---------RETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFL  274 (289)
Q Consensus       206 --~g~~i~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~  274 (289)
                        +|+++ +.++..|+||||+|+..|+         .+++++|+++|++++...   ......+..|.||||+|+..|+.
T Consensus       171 ~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~---~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          171 SWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL---KLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             SSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---CGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             ccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc---ccccccCCCCCCHHHHHHHhChH
Confidence              99995 9999999999999999988         899999999999986000   00014888999999999999998


Q ss_pred             Ccccc
Q 039376          275 GQYTC  279 (289)
Q Consensus       275 ~~~~~  279 (289)
                      ++...
T Consensus       247 ~iv~~  251 (273)
T 2pnn_A          247 GVLAY  251 (273)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            85443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1e-27  Score=185.27  Aligned_cols=144  Identities=17%  Similarity=0.200  Sum_probs=136.4

Q ss_pred             cHHHhcCCHHHHHHHHHcCCcC--CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           86 QIKQVKTSEDWFREMVETGVKV--DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~~--~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      +.++..++.+++++|+++|+++  +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+
T Consensus         7 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~   81 (153)
T 1awc_B            7 LEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-TKVDRTPLHMAASEGH---AN   81 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-CTTCCCHHHHHHHHTC---HH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHHHcCh---HH
Confidence            4577889999999999999876  5679999999999999999999998 68999998 9999999999999999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL  237 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~L  237 (289)
                      ++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|
T Consensus        82 ~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999  9999999999999999999999999999999999995 99999999999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=6.8e-29  Score=197.01  Aligned_cols=152  Identities=16%  Similarity=0.139  Sum_probs=117.2

Q ss_pred             cHHHhcCCHHHHHHHHHcC-CcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           86 QIKQVKTSEDWFREMVETG-VKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g-~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      +.++..++.++++.|++.+ .++   +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   
T Consensus        10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---   84 (179)
T 3f6q_A           10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM-RGARINVM-NRGDDTPLHLAASHGH---   84 (179)
T ss_dssp             HHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---
T ss_pred             HHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCC---
Confidence            3466777778888877773 333   5567788888888888888887777 47777777 7777888888888888   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+|||++|+..++.+++++|+++|
T Consensus        85 ~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           85 RDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            8888888877  7778777778888888888888888888888888774 777888888888888777888888888888


Q ss_pred             CCcc
Q 039376          242 GVEE  245 (289)
Q Consensus       242 ~~~~  245 (289)
                      ++++
T Consensus       162 ~~~~  165 (179)
T 3f6q_A          162 QNLN  165 (179)
T ss_dssp             CCCS
T ss_pred             cCcc
Confidence            8776

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=3.7e-29  Score=211.67  Aligned_cols=197  Identities=18%  Similarity=0.173  Sum_probs=154.7

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhc---CCHHHHHHHHHcC
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVK---TSEDWFREMVETG  104 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ll~~g  104 (289)
                      ......+...|..++|++|++.+........    .  . ...      .+.......+.|+..   ++.+++++|+++|
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~--~-~~~------~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLT----D--S-EFK------DPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTT----S--G-GGS------CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccC----C--c-ccc------cCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            3445566677888888888775421111000    0  0 000      000112223345554   8899999999998


Q ss_pred             Cc--------------CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCC--------------CCChHHHHHHhc
Q 039376          105 VK--------------VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTE--------------SCGTLFHSMANI  156 (289)
Q Consensus       105 ~~--------------~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~--------------~~~t~Lh~A~~~  156 (289)
                      ++              .|..|.||||+|++.|+.+++++|++ .+++++.+ +.              .|.||||+|+..
T Consensus        81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~  158 (273)
T 2pnn_A           81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACT  158 (273)
T ss_dssp             HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred             ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcCcc-ccccccccccccccccCCCCHHHHHHHc
Confidence            64              24589999999999999999999999 58999988 65              799999999999


Q ss_pred             CCchHHHHHHHHHh---ccCCCCccccCCCCCCHHHHHHHhCC---------HHHHHHHHHcCCCCCC-------CCCCC
Q 039376          157 NEDEAHRLLDEFLD---MISPLDLEETDTSGGTPLTSAAIVGN---------TKAAKILVKYNKNLPN-------MRNRI  217 (289)
Q Consensus       157 g~~~~~~~v~~Ll~---~~~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~i~~-------~~~~~  217 (289)
                      |+   .+++++|++   .  |++++.+|..|+||||+|+..|+         .+++++|+++|+++ +       .+|..
T Consensus       159 g~---~~~v~~Ll~~~~~--gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~-n~~~~~~~~~d~~  232 (273)
T 2pnn_A          159 NQ---LAIVKFLLQNSWQ--PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL-HPTLKLEEITNRK  232 (273)
T ss_dssp             TC---HHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCCGGGCCCTT
T ss_pred             CC---HHHHHHHHhcccC--CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc-ccccccccccCCC
Confidence            99   999999999   7  99999999999999999999998         79999999999985 5       48999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCC-Ccc
Q 039376          218 GQCPIHCAARSGHRETVEYLLSVTG-VEE  245 (289)
Q Consensus       218 g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~  245 (289)
                      |+||||+|+..|+.+++++|+++|+ ++.
T Consensus       233 g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          233 GLTPLALAASSGKIGVLAYILQREIHEPE  261 (273)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred             CCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence            9999999999999999999999999 666

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=6.4e-28  Score=189.08  Aligned_cols=153  Identities=17%  Similarity=0.128  Sum_probs=144.1

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.++..++.+++++|++.|.++   |..|.||||+|+..|+.+++++|++ .+++++.. +..|.||||+|+..|+   
T Consensus         7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---   81 (167)
T 3v31_A            7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-GKGRESALSLACSKGY---   81 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHHTC---
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-CCCCCcHHHHHHHcCC---
Confidence            45688899999999999999876   5689999999999999999999999 58999998 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|++++
T Consensus        82 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           82 TDIVKMLLDC--GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            9999999999  9999999999999999999999999999999999995 999999999999999999999999999998


Q ss_pred             CCcc
Q 039376          242 GVEE  245 (289)
Q Consensus       242 ~~~~  245 (289)
                      ++..
T Consensus       159 ~~~~  162 (167)
T 3v31_A          159 LKLL  162 (167)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=1.6e-27  Score=196.87  Aligned_cols=177  Identities=18%  Similarity=0.149  Sum_probs=160.8

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      ...|+..++.+++++|++.|+++   +..|.||||+|++.|+.+++++|++ .+.+++...+..|.||||+|+..|+   
T Consensus        13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~t~L~~A~~~~~---   88 (240)
T 3eu9_A           13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLGGDLNSTPLHWATRQGH---   88 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCBTTTTBCHHHHHHHHTC---
T ss_pred             HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhcCCcCCChhHHHHHcCC---
Confidence            34588899999999999999887   5689999999999999999999999 4677665535669999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhc
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH-RETVEYLLSV  240 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~-~~~~~~Ll~~  240 (289)
                      .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++ .+++++|+++
T Consensus        89 ~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  165 (240)
T 3eu9_A           89 LSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTF  165 (240)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred             HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence            9999999999  9999999999999999999999999999999999995 9999999999999997665 8999999999


Q ss_pred             CCCcccccccCCCCccccc-ccchHHHHHHHhCCCCccc
Q 039376          241 TGVEEEDSHEKYSNPFAGE-CGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~-~g~~~l~~a~~~g~~~~~~  278 (289)
                      |++++          ..+. .|.||||+|+..|..++..
T Consensus       166 ~~~~~----------~~~~~~g~t~L~~A~~~~~~~~v~  194 (240)
T 3eu9_A          166 NVSVN----------LGDKYHKNTALHWAVLAGNTTVIS  194 (240)
T ss_dssp             TCCTT----------CCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred             CCCcc----------hhhccCCCcHHHHHHHcCCHHHHH
Confidence            99999          7776 8999999999999887543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=7e-30  Score=210.97  Aligned_cols=173  Identities=16%  Similarity=0.093  Sum_probs=144.4

Q ss_pred             HHHHHcCCcC------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhc
Q 039376           98 REMVETGVKV------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM  171 (289)
Q Consensus        98 ~~Ll~~g~~~------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~  171 (289)
                      +.|+++|+++      +..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~   76 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQP-NEEGITALHNAICGAN---YSIVDFLITA   76 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHC
Confidence            5677777765      3467799999999999999999998 48899998 9999999999999999   9999999999


Q ss_pred             cCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHhcCCCcc-cc
Q 039376          172 ISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCPIHCA--ARSGHRETVEYLLSVTGVEE-ED  247 (289)
Q Consensus       172 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~g~~~~-~~  247 (289)
                        |++++.+|..|+||||+|+..|+.+++++|+++|+++ +..+ ..|+||||+|  +..|+.+++++|+++|++++ .+
T Consensus        77 --ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~  153 (229)
T 2vge_A           77 --GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN  153 (229)
T ss_dssp             --TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred             --CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence              9999999999999999999999999999999999996 8776 6999999999  99999999999999999987 33


Q ss_pred             cccCCCC---------------------cccccccchHHHHHHHhCCCCccc
Q 039376          248 SHEKYSN---------------------PFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       248 ~~~~~~~---------------------~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      ....+++                     ...+..|.|||++|+..|+.++..
T Consensus       154 ~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          154 SGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             GGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             CCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence            3222211                     135667999999999999888543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=9.6e-29  Score=207.09  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=139.8

Q ss_pred             ccHHHhc---CCHHHHHHHHHcCCcCC--------------CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCC--
Q 039376           85 QQIKQVK---TSEDWFREMVETGVKVD--------------LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTES--  145 (289)
Q Consensus        85 ~~~~~~~---~~~~~~~~Ll~~g~~~~--------------~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~--  145 (289)
                      .+.|+..   ++.+++++|++.|++++              ..|.||||+|+..|+.+++++|++ .+++++.+ +..  
T Consensus        47 L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~~~  124 (256)
T 2etb_A           47 LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLR-ACGRF  124 (256)
T ss_dssp             HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CCSGG
T ss_pred             HHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-ccccc
Confidence            3456676   88999999999987653              579999999999999999999999 58999888 665  


Q ss_pred             -----------CChHHHHHHhcCCchHHHHHHHHHh---ccCCCCccccCCCCCCHHHHHHH--hCCHH-------HHHH
Q 039376          146 -----------CGTLFHSMANINEDEAHRLLDEFLD---MISPLDLEETDTSGGTPLTSAAI--VGNTK-------AAKI  202 (289)
Q Consensus       146 -----------~~t~Lh~A~~~g~~~~~~~v~~Ll~---~~~g~~~~~~~~~g~t~L~~A~~--~g~~~-------~v~~  202 (289)
                                 |.||||+|+..|+   .+++++|++   .  |++++.+|..|+||||+|+.  .++.+       ++++
T Consensus       125 ~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~--ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~  199 (256)
T 2etb_A          125 FQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQ--PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG  199 (256)
T ss_dssp             GSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccc--CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHH
Confidence                       9999999999999   999999999   7  99999999999999999999  78888       9999


Q ss_pred             HHHcCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          203 LVKYNKNLP-------NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       203 Ll~~g~~i~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      |+++|++ +       +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       200 Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          200 LLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            9999998 5       7899999999999999999999999999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=8.8e-28  Score=192.66  Aligned_cols=149  Identities=18%  Similarity=0.193  Sum_probs=140.3

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.++..++.+++++|+++|+++   +..|.||||+|++.|+.+++++|++. +++++.+ +..|.||||+|+..|+   
T Consensus        39 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---  113 (192)
T 2rfm_A           39 LMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTK-DFSGKTPLMWSIIFGY---  113 (192)
T ss_dssp             HHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---
T ss_pred             HHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCcHHHHHHHcCC---
Confidence            34577889999999999999876   56799999999999999999999995 8899998 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus       114 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          114 SEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999  9999999999999999999999999999999999995 999999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.6e-27  Score=189.05  Aligned_cols=157  Identities=15%  Similarity=0.134  Sum_probs=141.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT  189 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~  189 (289)
                      .+.++||.|++.|+.+++++|++..+.+++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|.||||
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~   77 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGR---SAVVEMLIMR--GARINVMNRGDDTPLH   77 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCc---HHHHHHHHHc--CCCCCCcCCCCCCHHH
Confidence            56789999999999999999999778888888 9999999999999999   9999999999  9999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc-cccccCCCCcccc-cccchHHHH
Q 039376          190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE-EDSHEKYSNPFAG-ECGLKLLEI  267 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~~~-~~g~~~l~~  267 (289)
                      +|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++ .+....+++...- ......+.+
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~  156 (179)
T 3f6q_A           78 LAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER  156 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999996 9999999999999999999999999999999999 7778888885544 344566777


Q ss_pred             HHHhCC
Q 039376          268 LIEFNF  273 (289)
Q Consensus       268 a~~~g~  273 (289)
                      +.+.|.
T Consensus       157 L~~~g~  162 (179)
T 3f6q_A          157 AEKMGQ  162 (179)
T ss_dssp             HHHTTC
T ss_pred             HHHhhc
Confidence            787774

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=4e-28  Score=188.39  Aligned_cols=142  Identities=20%  Similarity=0.198  Sum_probs=119.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC-
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT-  186 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t-  186 (289)
                      +..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+ .|+   .+++++|++.  |++++.++..|+| 
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~--g~~~~~~d~~g~tt   80 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLE-AGANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLH--GAEPNCADPATLTR   80 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTT--TCCCCCCCTTTCCC
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHc--CCCCCCcCCCCCcH
Confidence            5678999999999999999999998 58999999 999999999985 899   9999999999  9999999999999 


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376          187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE  266 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~  266 (289)
                      |||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..|+.+++++|+++|++++          ..+..|.++.+
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~~~  149 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR----------GSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC----------ccCcCcCcccc
Confidence            999999999999999999999995 9999999999999999999999999999999999          88888988876


Q ss_pred             HH
Q 039376          267 IL  268 (289)
Q Consensus       267 ~a  268 (289)
                      .+
T Consensus       150 ~~  151 (156)
T 1bi7_B          150 GP  151 (156)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=1.8e-27  Score=203.54  Aligned_cols=176  Identities=13%  Similarity=0.127  Sum_probs=158.3

Q ss_pred             cHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHH
Q 039376           86 QIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAH  162 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~  162 (289)
                      +.|+..++.+++++|+++|+++   |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .
T Consensus        45 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~g~tpL~~A~~~g~---~  119 (299)
T 1s70_B           45 LAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-DNEGWIPLHAAASCGY---L  119 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---H
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCcHHHHHHHcCC---H
Confidence            3478899999999999999987   5689999999999999999999999 68999999 9999999999999999   9


Q ss_pred             HHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCC-------------------------CCCCCCC
Q 039376          163 RLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKN-------------------------LPNMRNR  216 (289)
Q Consensus       163 ~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~-------------------------i~~~~~~  216 (289)
                      +++++|++.  |++++..+..|.||||+|+..++.+++++++.. +.+                         .....+.
T Consensus       120 ~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          120 DIAEYLISQ--GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             HHHHHHHHT--TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             HHHHHHHhC--CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            999999999  999999999999999999999998888876643 222                         1234667


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          217 IGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      .|.||||+|+..|+.+++++|+++|++++          ..+..|.||||+|+..|+.++..
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~----------~~d~~g~tpL~~A~~~~~~~~v~  249 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVN----------IKDYDGWTPLHAAAHWGKEEACR  249 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCC----------CcCCCCCcHHHHHHhcCCHHHHH
Confidence            89999999999999999999999999999          99999999999999999988543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=9.1e-28  Score=182.05  Aligned_cols=127  Identities=19%  Similarity=0.213  Sum_probs=122.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCC-CCC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTS-GGT  186 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~-g~t  186 (289)
                      +..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+. ++   .+++++|++.  |++++.++.. |+|
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~--g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLE-AGADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLH--GAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHH--TCCSSCCBTTTTBC
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHC--CCCCCCcCCCCCCC
Confidence            6689999999999999999999999 58999998 9999999999999 99   9999999999  9999999999 999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376          187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  243 (289)
                      |||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999995 99999999999999999999999999999986

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.6e-27  Score=185.23  Aligned_cols=149  Identities=15%  Similarity=0.138  Sum_probs=135.9

Q ss_pred             ccHHHhcCCHHHHHHHHHcCC-cC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCch
Q 039376           85 QQIKQVKTSEDWFREMVETGV-KV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDE  160 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~-~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~  160 (289)
                      .+.++..++.++++.|++.+. ++   +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+  
T Consensus        12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~--   87 (165)
T 3twr_A           12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAK-DKGGLVPLHNACSYGH--   87 (165)
T ss_dssp             HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC--
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCcc-CCCCCCHHHHHHHcCc--
Confidence            345788899999999998543 33   5578899999999999999999999 58999999 9999999999999999  


Q ss_pred             HHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          161 AHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       161 ~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                       .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+|+. ++.+++++|+++
T Consensus        88 -~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           88 -YEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             -HHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             -HHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence             9999999999  9999999999999999999999999999999999995 9999999999999776 999999999999


Q ss_pred             CC
Q 039376          241 TG  242 (289)
Q Consensus       241 g~  242 (289)
                      |+
T Consensus       163 gA  164 (165)
T 3twr_A          163 AA  164 (165)
T ss_dssp             --
T ss_pred             cc
Confidence            86

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=2.4e-28  Score=205.03  Aligned_cols=149  Identities=17%  Similarity=0.181  Sum_probs=135.3

Q ss_pred             hcCCHHHHHHHHHcCCcC--------------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccC------------
Q 039376           90 VKTSEDWFREMVETGVKV--------------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFT------------  143 (289)
Q Consensus        90 ~~~~~~~~~~Ll~~g~~~--------------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~------------  143 (289)
                      ..++.+++++|++.|++.              |..|.||||+|+..|+.+++++|++ .+++++.+ +            
T Consensus        58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-~~~~~~~~~~~~~  135 (260)
T 3jxi_A           58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-KGADVHAQ-ARGRFFQPKDEGG  135 (260)
T ss_dssp             BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CEECCCSSSCCCC
T ss_pred             hcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcCcc-ccccccCcccccc
Confidence            458889999999987542              2389999999999999999999999 68999988 6            


Q ss_pred             --CCCChHHHHHHhcCCchHHHHHHHHHh---ccCCCCccccCCCCCCHHHHHHHhCC---------HHHHHHHHHcCCC
Q 039376          144 --ESCGTLFHSMANINEDEAHRLLDEFLD---MISPLDLEETDTSGGTPLTSAAIVGN---------TKAAKILVKYNKN  209 (289)
Q Consensus       144 --~~~~t~Lh~A~~~g~~~~~~~v~~Ll~---~~~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~g~~  209 (289)
                        ..|.||||+|+..|+   .+++++|++   .  |++++.+|..|+||||+|+..++         .+++++|+++|++
T Consensus       136 ~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~--ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~  210 (260)
T 3jxi_A          136 YFYFGELPLSLAACTNQ---PHIVHYLTENGHK--QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK  210 (260)
T ss_dssp             SCCSCSSHHHHHHHTTC---HHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHcCC---HHHHHHHHhcccc--CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc
Confidence              579999999999999   999999999   7  99999999999999999999888         7999999999998


Q ss_pred             CC------CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          210 LP------NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       210 i~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      +.      +.++..|+||||+|+..|+.+++++|+++|++..
T Consensus       211 ~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            31      5699999999999999999999999999998865

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.9e-26  Score=177.52  Aligned_cols=145  Identities=16%  Similarity=0.178  Sum_probs=135.1

Q ss_pred             cHHHhcCCHHHHHHHHHcC-CcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           86 QIKQVKTSEDWFREMVETG-VKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g-~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      +.++..++.++++.|++.. .++   +..|.||||+ +..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   
T Consensus         7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---   80 (156)
T 1bd8_A            7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQ-DTSGTSPVHDAARTGF---   80 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---
T ss_pred             HHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCc-CCCCCCHHHHHHHcCc---
Confidence            4578889999999999982 244   6689999999 99999999999998 58999999 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      .+++++|++.  |++++.++..|+||||+|+..|+.+++++|++. +++ +.++..|+||||+|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999  999999999999999999999999999999999 885 99999999999999999999999999975

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.4e-28  Score=202.01  Aligned_cols=179  Identities=14%  Similarity=0.093  Sum_probs=133.1

Q ss_pred             cHHHhcCCHHHHHHHHHcCCcCC--CCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           86 QIKQVKTSEDWFREMVETGVKVD--LGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~~~--~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      +.+...+..+.++.|+++|++++  ..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+
T Consensus        10 ~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~g~---~~   84 (239)
T 1ycs_B           10 PPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLP-NDEGITALHNAVCAGH---TE   84 (239)
T ss_dssp             ---------------------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-CTTSCCHHHHHHHHTC---HH
T ss_pred             chhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCC---HH
Confidence            45667788889999999999875  467899999999999999999998 58899999 9999999999999999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHhc
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ-CPIHCA--ARSGHRETVEYLLSV  240 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~-t~L~~A--~~~~~~~~~~~Ll~~  240 (289)
                      ++++|++.  |++++.+|..|+||||+|+..|+.+++++|+++|+++ +..+..|. ||||+|  +..|+.+++++|+++
T Consensus        85 ~v~~Ll~~--ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           85 IVKFLVQF--GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             HHHHHHHH--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            99999999  9999999999999999999999999999999999996 88888777 999999  788999999999999


Q ss_pred             CCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376          241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF  273 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~  273 (289)
                      |++++...+ .......+..+.++.++++..|.
T Consensus       162 ~a~~~~~~~-~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          162 QEKMGIMNK-GVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHTTTTGG-GEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhccccccc-ceEEEEeccCCCCCCcccccCCC
Confidence            999871111 11111235556677766666554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=2.6e-26  Score=170.85  Aligned_cols=126  Identities=26%  Similarity=0.374  Sum_probs=121.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT  189 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~  189 (289)
                      +|.||||+|++.|+.+++++|++. +.+++.. +..|.||||+|+..++   .+++++|++.  |++++.++..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHc--CCCCcccCCCCCcHHH
Confidence            489999999999999999999994 8888888 8999999999999999   9999999999  9999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376          190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  243 (289)
                      +|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999995 99999999999999999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2e-27  Score=197.41  Aligned_cols=151  Identities=17%  Similarity=0.157  Sum_probs=109.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      +..|.||||.|++.|+.+.++.|++ .|++++.  +..+.||||.|+..|+   .+++++|++.  |++++.++..|.||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~--~~~~~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~d~~g~t~   73 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIA-HGMRVKF--NPLPLALLLDSSLEGE---FDLVQRIIYE--VDDPSLPNDEGITA   73 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTC---HHHHHHHTST--TSSCCCCCTTSCCH
T ss_pred             CccccccCchhhhhhhHHHHHHHhc-cCCCccc--CchhhHHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCH
Confidence            4579999999999999999999998 5888875  4678999999999999   9999999999  89999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccc-hHHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGL-KLLE  266 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-~~l~  266 (289)
                      ||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++++          ..+..|. ||++
T Consensus        74 L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~~~~t~l~  142 (239)
T 1ycs_B           74 LHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF----------AMTYSDMQTAAD  142 (239)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCSSSCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------eecCCCCcchHH
Confidence            99999999999999999999996 9999999999999999999999999999999999          8887766 9999


Q ss_pred             HH--HHhCCCCcc
Q 039376          267 IL--IEFNFLGQY  277 (289)
Q Consensus       267 ~a--~~~g~~~~~  277 (289)
                      +|  +..|+.++.
T Consensus       143 ~a~~~~~g~~~~~  155 (239)
T 1ycs_B          143 KCEEMEEGYTQCS  155 (239)
T ss_dssp             HCCSSSTTCCCHH
T ss_pred             HHHHhhhccHHHH
Confidence            98  677777743

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=3.1e-26  Score=173.54  Aligned_cols=126  Identities=21%  Similarity=0.265  Sum_probs=119.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      ...|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..++   .+++++|++.  |++++.++..|.||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~d~~g~t~   83 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKN--GADVNAVDAIGFTP   83 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCH
Confidence            4467899999999999999999999 58999998 9999999999999999   9999999999  99999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      ||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999995 999999999999999999999999999886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=3.1e-26  Score=194.27  Aligned_cols=149  Identities=16%  Similarity=0.217  Sum_probs=137.9

Q ss_pred             cHHHhcCCHHHHHHHHHcCC-cC---CCCCchHHHHHH-----HcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhc
Q 039376           86 QIKQVKTSEDWFREMVETGV-KV---DLGEHPQLRRAL-----VRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANI  156 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~-~~---~~~g~t~Lh~A~-----~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~  156 (289)
                      +.|+..++.+++++|++.|+ ++   +..|.||||+|+     ..++.+++++|++. +...+.. +..|.||||+|+..
T Consensus       116 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~tpLh~A~~~  193 (276)
T 4hbd_A          116 HYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKA-SQAGQTALMLAVSH  193 (276)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCC-TTTCCCHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCcccc-CCCCCCHHHHHHHc
Confidence            35888999999999999998 55   668999999999     67899999999985 6777777 88899999999999


Q ss_pred             CCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 039376          157 NEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARSGHRETVE  235 (289)
Q Consensus       157 g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~  235 (289)
                      |+   .+++++|++.  |++++.+|..|+||||+|+..|+.+++++|++ .|+++ +.+|..|+||||+|+..|+.++++
T Consensus       194 g~---~~~v~~Ll~~--gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~  267 (276)
T 4hbd_A          194 GR---VDVVKALLAC--EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALMVALDAGQSEIAS  267 (276)
T ss_dssp             TC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CC---HHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99   9999999999  99999999999999999999999999999999 89995 999999999999999999999999


Q ss_pred             HHHhcCC
Q 039376          236 YLLSVTG  242 (289)
Q Consensus       236 ~Ll~~g~  242 (289)
                      +|++++.
T Consensus       268 ~Ll~~~~  274 (276)
T 4hbd_A          268 MLYSRMN  274 (276)
T ss_dssp             HHHHHCC
T ss_pred             HHHhccC
Confidence            9998753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=2.5e-27  Score=205.86  Aligned_cols=206  Identities=14%  Similarity=0.096  Sum_probs=155.0

Q ss_pred             hhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcCCC-----------------CCc---hHHHHHHHcCCH
Q 039376           65 EITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKVDL-----------------GEH---PQLRRALVRKDW  124 (289)
Q Consensus        65 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~-----------------~g~---t~Lh~A~~~g~~  124 (289)
                      +++++++..+..++..+..+..+.  .++.++++.|+++|++++.                 .+.   +.+|+|+..+..
T Consensus        33 dlv~~ll~~ga~i~~~~~~g~~~~--~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  110 (327)
T 1sw6_A           33 DLTSDFLSSPLKIMKALPSPVVND--NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ  110 (327)
T ss_dssp             TCCCSTTTSSCCCEECBCCCCCCC--HHHHHHHHHHHHHHHC-------------------------------CHHHHHH
T ss_pred             chHHHHhhCCcccccCCCCCCccc--CchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence            445566666766666665554442  2889999999999987543                 111   224677777777


Q ss_pred             HHHHHHHhhCCCCccc-ccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCC---HHHH
Q 039376          125 KEVERFISENPDTLYA-KFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGN---TKAA  200 (289)
Q Consensus       125 ~~v~~ll~~~~~~~~~-~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v  200 (289)
                      ++++.|++ .+++++. + +..|.||||+|+..|+   .++|++|++.  |++++.++..|+||||+|+..|+   .+++
T Consensus       111 ~~~~~l~~-~g~dvn~~~-d~~g~TpLh~Aa~~g~---~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~  183 (327)
T 1sw6_A          111 EVNDAFPN-TQLNLNIPV-DEHGNTPLHWLTSIAN---LELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTF  183 (327)
T ss_dssp             HHHHHCTT-SCCCSCSCC-STTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred             HHHHHHHh-cCCCccccc-CCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhcccccHHHH
Confidence            88887777 6899999 7 9999999999999999   9999999999  99999999999999999999998   6788


Q ss_pred             HHHHHcC-CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhc--------------------CCCcc-cccccCCC-
Q 039376          201 KILVKYN-KNLPNMRNRIGQCPIHCAAR----SGHRETVEYLLSV--------------------TGVEE-EDSHEKYS-  253 (289)
Q Consensus       201 ~~Ll~~g-~~i~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~--------------------g~~~~-~~~~~~~~-  253 (289)
                      +.|++++ +++ +.++..|+||||+|+.    .|+.+++++|++.                    |++++ .+....++ 
T Consensus       184 ~~ll~~~~~~~-~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L  262 (327)
T 1sw6_A          184 EALLDYLYPCL-ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSI  262 (327)
T ss_dssp             HHHHHHHGGGG-GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHH
T ss_pred             HHHHHhhhccc-cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChh
Confidence            8888876 564 8999999999999999    8999999999988                    55555 33333322 


Q ss_pred             -------------CcccccccchHHHHHHHhCCCCccccc
Q 039376          254 -------------NPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       254 -------------~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                                   ....+..|+||||+|+..|+.++...+
T Consensus       263 ~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~L  302 (327)
T 1sw6_A          263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL  302 (327)
T ss_dssp             HHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                         336788999999999999998854443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=1.5e-26  Score=184.79  Aligned_cols=148  Identities=11%  Similarity=0.036  Sum_probs=72.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc-hHHHHHHHHHhccCCCCccccCCCCCCHHHH
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED-EAHRLLDEFLDMISPLDLEETDTSGGTPLTS  190 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~-~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~  190 (289)
                      +++|+.|++.|+.+.++.++.. +  ++...+..|+||||+|+..++. ...+++++|++.  |++++.++..|+||||+
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpLh~   81 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEK-G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLFFP   81 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHH-S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhc-C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence            3455555555555555555442 1  1222013455555555555540 001355555555  55555555555555555


Q ss_pred             HHHhCC------HHHHHHHHHcCCCCCCCCCCCCC-CHHHHHHHcC-----CHHHHHHHHh-cCCCcccccccCCCCccc
Q 039376          191 AAIVGN------TKAAKILVKYNKNLPNMRNRIGQ-CPIHCAARSG-----HRETVEYLLS-VTGVEEEDSHEKYSNPFA  257 (289)
Q Consensus       191 A~~~g~------~~~v~~Ll~~g~~i~~~~~~~g~-t~L~~A~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~  257 (289)
                      |+..|+      .+++++|+++|+++ +.+|..|+ ||||+|+..+     +.+++++|++ +|++++          .+
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~----------~~  150 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL----------IK  150 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT----------CC
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc----------cc
Confidence            555543      34455555555553 55555555 5555555522     2345555555 555555          55


Q ss_pred             ccccchHHHHHHHhCCCC
Q 039376          258 GECGLKLLEILIEFNFLG  275 (289)
Q Consensus       258 ~~~g~~~l~~a~~~g~~~  275 (289)
                      +..|.||||+|...|+..
T Consensus       151 d~~G~TpL~~A~~~~~~~  168 (186)
T 3t8k_A          151 DKWGLTALEFVKRCQKPI  168 (186)
T ss_dssp             CTTSCCHHHHHHTTTCHH
T ss_pred             CCCCCCHHHHHHHcCCHH
Confidence            555555555555555443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=7e-26  Score=171.68  Aligned_cols=128  Identities=19%  Similarity=0.217  Sum_probs=117.1

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|.||
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQH--KALVNTTGYQNDSP   79 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCGGGCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCcccCcCCCCCCH
Confidence            7789999999999999999999998 58999998 9999999999999999   9999999999  99999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  243 (289)
                      ||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..+..+++++|.+.+..
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999999999999999999995 99999999999999999999998888766554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=4.1e-26  Score=182.28  Aligned_cols=156  Identities=13%  Similarity=0.096  Sum_probs=136.8

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC-C-CCCchHHHHHHHcCCH----HHHHHHHhhCCCCcccccCCCCChHHHHHHhcCC
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV-D-LGEHPQLRRALVRKDW----KEVERFISENPDTLYAKFTESCGTLFHSMANINE  158 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~-~-~~g~t~Lh~A~~~g~~----~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (289)
                      .+.++..|..+.++.++..+.+. + ..|.||||+|+..|+.    +++++||+ .|++++.+ +..|+||||+|+..++
T Consensus        10 l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-d~~g~TpLh~a~~~~~   87 (186)
T 3t8k_A           10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-TKEGTTLFFPLFQGGG   87 (186)
T ss_dssp             HHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-CTTCCCTHHHHHHHCT
T ss_pred             HHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-CCCCCcHHHHHHHcCC
Confidence            34577889999999999988654 3 5799999999999985    48999998 69999999 9999999999999986


Q ss_pred             ch---HHHHHHHHHhccCCCCccccCCCCC-CHHHHHHHhC-----CHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHc
Q 039376          159 DE---AHRLLDEFLDMISPLDLEETDTSGG-TPLTSAAIVG-----NTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARS  228 (289)
Q Consensus       159 ~~---~~~~v~~Ll~~~~g~~~~~~~~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~  228 (289)
                      ..   ..+++++|++.  |++++.+|..|+ ||||+|+..+     ..+++++|++ +|+++ +.+|..|+||||+|+..
T Consensus        88 ~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A           88 NDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             TCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHHHHHc
Confidence            21   25789999999  999999999999 9999999844     4579999999 99996 99999999999999999


Q ss_pred             CCHHHHHHHHhcCCCcc
Q 039376          229 GHRETVEYLLSVTGVEE  245 (289)
Q Consensus       229 ~~~~~~~~Ll~~g~~~~  245 (289)
                      |+.+++++|.++..+.+
T Consensus       165 ~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          165 QKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             TCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999998876554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.9e-25  Score=169.18  Aligned_cols=127  Identities=16%  Similarity=0.160  Sum_probs=119.8

Q ss_pred             CCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Q 039376          135 PDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMR  214 (289)
Q Consensus       135 ~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~  214 (289)
                      +++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|+||||+|+. |+.+++++|+++|+++ +.+
T Consensus         2 ~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~   73 (136)
T 1d9s_A            2 SPGIHML-GGSSDAGLATAAARGQ---VETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCA   73 (136)
T ss_dssp             CCCCSCC-CCCCSCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCC
T ss_pred             CCCccCC-CCCCccHHHHHHHcCC---HHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCc
Confidence            5677788 8999999999999999   9999999999  99999999999999999999 9999999999999995 999


Q ss_pred             CCC-CCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          215 NRI-GQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       215 ~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      +.. |+||||+|+..|+.+++++|+++|++++          ..+..|.|||++|+..|+.++...
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~d~~g~tpl~~A~~~~~~~~~~~  129 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLD----------VCDAWGRLPVDLAEEQGHRDIARY  129 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC----------CCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------ccCCCCCCHHHHHHHcCCHHHHHH
Confidence            999 9999999999999999999999999999          999999999999999998875443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=6e-25  Score=180.17  Aligned_cols=131  Identities=13%  Similarity=0.142  Sum_probs=115.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      +..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.. |++++.++..|+||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~-g~~~~~~d~~g~tp  143 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQP-NIELNQQNKLGDTA  143 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTST-TCCCCCCCTTSCCH
T ss_pred             ccccccccccccccCcHHHHHHHHh-CCCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCC-CCCccccCCCCCCH
Confidence            5578999999999999999999999 68999998 9999999999999999   99999999875 79999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      ||+|+..|+.+++++|+++|+++ +.++..|+||||+|+..++.++++.|+.+|++..
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            99999999999999999999995 9999999999999999999999999999999987

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=6.3e-25  Score=166.39  Aligned_cols=124  Identities=22%  Similarity=0.243  Sum_probs=114.9

Q ss_pred             CCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Q 039376          136 DTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN  215 (289)
Q Consensus       136 ~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~  215 (289)
                      +++ .+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|+||||+|+..|+.+++++|+++|+++ +.++
T Consensus         2 ~d~-~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~   73 (137)
T 3c5r_A            2 IDP-FT-NHRGETLLHIASIKGD---IPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTG   73 (137)
T ss_dssp             --C-CC-CTTCCCHHHHHHHHTC---HHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred             CCC-Cc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcC
Confidence            444 45 8899999999999999   9999999999  9999999999999999999999999999999999996 9999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376          216 RIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY  277 (289)
Q Consensus       216 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~  277 (289)
                      ..|+||||+|+..|+.+++++|+++|++++          ..+..|.||+++|+..+..+++
T Consensus        74 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~A~~~~~~~~l  125 (137)
T 3c5r_A           74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRN----------AVNIFGLRPVDYTDDESMKSLL  125 (137)
T ss_dssp             GGGCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCGGGGCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----------CCCCCCCCHHHHHhhccHHHHH
Confidence            999999999999999999999999999999          9999999999999887766643

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=3.5e-24  Score=159.26  Aligned_cols=117  Identities=18%  Similarity=0.227  Sum_probs=106.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      +..|.||||+|++.|+.+++++|++ .+.+++.+ +..|.||||+|+..++   .+++++|++.  |++++.+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLK--GADINAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTT--TCCTTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCH
Confidence            4578899999999999999999998 58899998 9999999999999999   9999999999  99999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRE  232 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~  232 (289)
                      ||+|+..|+.+++++|+++|+++ +.++..|+||||+|...+..+
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHH
Confidence            99999999999999999999995 999999999999995444433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=2.5e-24  Score=184.72  Aligned_cols=141  Identities=18%  Similarity=0.184  Sum_probs=123.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCccc------ccCCCCChHHHHHHhc---CCchHHHHHHHHHhccCCCCcccc
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYA------KFTESCGTLFHSMANI---NEDEAHRLLDEFLDMISPLDLEET  180 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~------~~~~~~~t~Lh~A~~~---g~~~~~~~v~~Ll~~~~g~~~~~~  180 (289)
                      .+.++|+.|++.|+.+.++.|+. .+.+++.      . +..|.||||+|+..   ++   .+++++|++.  |++++.+
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~---~~iv~~Ll~~--gadvn~~  222 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDA-QAPEELVLHLAVKVANQAS---LPLVDFIIQN--GGHLDAK  222 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSS-CSCEECHHHHHHHTCCTTT---HHHHHHHHHH--SSCTTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCccc-CCCCccHHHHHHHhcccCc---HHHHHHHHhc--CCCCCCC
Confidence            34578999999999999999997 6888877      5 78999999999997   78   9999999999  9999999


Q ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccc
Q 039376          181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGEC  260 (289)
Q Consensus       181 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~  260 (289)
                      |..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..++.+++++|+++|++                .
T Consensus       223 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------------~  285 (301)
T 2b0o_E          223 AADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG----------------T  285 (301)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------------T
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------------C
Confidence            999999999999999999999999999995 99999999999999999999999999999876                4


Q ss_pred             cchHHHHHHHhCCC
Q 039376          261 GLKLLEILIEFNFL  274 (289)
Q Consensus       261 g~~~l~~a~~~g~~  274 (289)
                      |.||||+|+..|+-
T Consensus       286 g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          286 FAFPLHVDYSWVIS  299 (301)
T ss_dssp             TSSCCC--------
T ss_pred             CCChhHHHHhcCCc
Confidence            67999999988863

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=6.6e-24  Score=160.66  Aligned_cols=120  Identities=23%  Similarity=0.248  Sum_probs=113.8

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                      ...+.||||+|+..|+   .+++++|++.  |++++.++..|+||||+|+..|+.+++++|+++|+++ +..+..|+|||
T Consensus        11 ~~~~~t~l~~A~~~g~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L   84 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQ---DDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPL   84 (136)
T ss_dssp             -CHHHHHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred             cccccHHHHHHHHhCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHH
Confidence            5668999999999999   9999999999  9999999999999999999999999999999999996 99999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      |+|+..|+.+++++|+++|++++          ..+..|.|||++|+..|..++..
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g~~~~----------~~~~~g~tpl~~A~~~~~~~~~~  130 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHGADVN----------AQDKFGKTAFDISIGNGNEDLAE  130 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCc----------CcCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999999999          99999999999999999887543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=2.9e-23  Score=154.25  Aligned_cols=114  Identities=21%  Similarity=0.256  Sum_probs=106.4

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                      +..|.||||+|+..|+   .+++++|++.  |++++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus         4 ~~~~~~~l~~A~~~~~---~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL   77 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGD---LDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPL   77 (123)
T ss_dssp             ---CHHHHHHHHHTTC---HHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHH
T ss_pred             ccccchHHHHHHHcCC---HHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHH
Confidence            5678999999999999   9999999999  9999999999999999999999999999999999995 99999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                      |+|+..++.+++++|+++|++++          ..+..|.||+++|...+
T Consensus        78 ~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           78 LSAVYEGHVSCVKLLLSKGADKT----------VKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHhCCHH
Confidence            99999999999999999999999          99999999999985433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=4.1e-23  Score=153.40  Aligned_cols=119  Identities=26%  Similarity=0.356  Sum_probs=113.1

Q ss_pred             CCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Q 039376          145 SCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC  224 (289)
Q Consensus       145 ~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~  224 (289)
                      .|.||||+|+..|+   .+++++|++.  |++++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|+||||+
T Consensus         1 ~g~t~L~~A~~~~~---~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTC---HHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCc---HHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHH
Confidence            48999999999999   9999999999  9999999999999999999999999999999999995 9999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcccc
Q 039376          225 AARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       225 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                      |+..++.+++++|+++|++++          ..+..|.||+++|+..|..++...
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~~----------~~~~~g~t~l~~A~~~~~~~~~~~  119 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADVN----------AKDKNGRTPLHLAARNGHLEVVKL  119 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcChHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHHcCcHHHHHH
Confidence            999999999999999999999          999999999999999998875443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=4.8e-23  Score=163.92  Aligned_cols=122  Identities=15%  Similarity=0.128  Sum_probs=107.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-CCCCC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-TSGGT  186 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-~~g~t  186 (289)
                      +..|.||||+|++.|+.+++++|++  +.+++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++ ..|+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~--ga~~~~~~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEA--GADLDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCcCCCCCCCC
Confidence            4477899999999999999999997  7888888 9999999999999999   9999999999  99999888 88999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 039376          187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL  238 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  238 (289)
                      |||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..++....+.++
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~~l  163 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPM  163 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccCcccccHH
Confidence            999999999999999999999995 999999999999998764443333333

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=4.1e-26  Score=201.21  Aligned_cols=147  Identities=9%  Similarity=0.020  Sum_probs=125.8

Q ss_pred             ccccHHHhcCCHHHHHHHHHcCC------cCCCCCchHHHHHHHcCCHHHHHHHHhhCCCC---cccccCCCCChHHHHH
Q 039376           83 ERQQIKQVKTSEDWFREMVETGV------KVDLGEHPQLRRALVRKDWKEVERFISENPDT---LYAKFTESCGTLFHSM  153 (289)
Q Consensus        83 ~~~~~~~~~~~~~~~~~Ll~~g~------~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~---~~~~~~~~~~t~Lh~A  153 (289)
                      ...+.|+..|+.+++++|+++|+      .++..|.||||+|++.|+.++|++|++ .+++   .+.. ... .||||+|
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i~-~~~-~TpLh~A  170 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQ-AEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHS-HHH-HHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccccC-CCC-CCHHHHH
Confidence            34567889999999999999998      456688999999999999999999998 4654   2222 222 9999999


Q ss_pred             HhcCCchHHHHHHHHHhccCCCCccc--cCCCCCCHHHHHH-HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Q 039376          154 ANINEDEAHRLLDEFLDMISPLDLEE--TDTSGGTPLTSAA-IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH  230 (289)
Q Consensus       154 ~~~g~~~~~~~v~~Ll~~~~g~~~~~--~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~  230 (289)
                      +..|+   .++|++|++.  |++++.  .+..|.||||+|+ ..|+.+++++|++.|+        .|.||||+|+..|+
T Consensus       171 a~~G~---~eiv~~Ll~~--ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~  237 (376)
T 2aja_A          171 AENGH---LHVLNRLCEL--APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGE  237 (376)
T ss_dssp             HHTTC---HHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTT
T ss_pred             HHCCC---HHHHHHHHHc--CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCC
Confidence            99999   9999999999  899887  8888999999999 9999999999998663        27899999999999


Q ss_pred             HHHHHHHHhcCCCcc
Q 039376          231 RETVEYLLSVTGVEE  245 (289)
Q Consensus       231 ~~~~~~Ll~~g~~~~  245 (289)
                      .+++++|+++|++++
T Consensus       238 ~evv~lL~~~ga~~~  252 (376)
T 2aja_A          238 KYVNPFIARHVNRLK  252 (376)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccc
Confidence            999999999999876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.2e-24  Score=179.48  Aligned_cols=165  Identities=13%  Similarity=0.075  Sum_probs=141.7

Q ss_pred             cHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHH
Q 039376           86 QIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAH  162 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~  162 (289)
                      +.++..++.+++++|++.|+++   |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .
T Consensus        26 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~n~~-d~~g~tpLh~A~~~g~---~  100 (229)
T 2vge_A           26 LDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSP-DSHGWTPLHCAASCND---T  100 (229)
T ss_dssp             HHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---H
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-CCCCCCHHHHHHHcCC---H
Confidence            3488899999999999999987   5689999999999999999999998 58999999 9999999999999999   9


Q ss_pred             HHHHHHHhccCCCCccccC-CCCCCHHHHH--HHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 039376          163 RLLDEFLDMISPLDLEETD-TSGGTPLTSA--AIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS  239 (289)
Q Consensus       163 ~~v~~Ll~~~~g~~~~~~~-~~g~t~L~~A--~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  239 (289)
                      +++++|++.  |++++.++ ..|+||||+|  +..|+.+++++|++.|+++ +..+..|.||++.++....   .++|++
T Consensus       101 ~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~---~~~ll~  174 (229)
T 2vge_A          101 VICMALVQH--GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFG---DELSFR  174 (229)
T ss_dssp             HHHHHHHTT--TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSST---TBCCBC
T ss_pred             HHHHHHHHc--CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhccc---cccCcc
Confidence            999999999  99999986 6999999999  9999999999999999995 8888888888885544432   367788


Q ss_pred             cCCCcc---cccccCCCCccccccc
Q 039376          240 VTGVEE---EDSHEKYSNPFAGECG  261 (289)
Q Consensus       240 ~g~~~~---~~~~~~~~~~~~~~~g  261 (289)
                      .|++++   .+..+.+++...-..|
T Consensus       175 ~ga~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          175 EGESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             TTCEEEEEESSCTTCSSEEEEEETT
T ss_pred             ccccccccccCCCcccHHHHHHHcC
Confidence            888844   5666777775443333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=3.6e-23  Score=172.25  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=112.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-CCCCC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-TSGGT  186 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-~~g~t  186 (289)
                      +..|.||||+|++.|+.+++++|++  +++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++ ..|+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~--ga~~~~~~~~~g~t  113 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEA--GADLDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCSSSCCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHc--CCCCCcCCCCCCCC
Confidence            4567899999999999999998887  6788888 8889999999999999   9999999998  89998888 78999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH----------------HcCCHHHHHHHHhcCCC
Q 039376          187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA----------------RSGHRETVEYLLSVTGV  243 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~----------------~~~~~~~~~~Ll~~g~~  243 (289)
                      |||+|+..|+.+++++|+++|+++ +.++..|+||||+|+                ..|+.+++++|++++.+
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            999999999999999999999995 889999999888887                67889999999987655

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=4e-23  Score=160.05  Aligned_cols=132  Identities=13%  Similarity=0.048  Sum_probs=108.5

Q ss_pred             cccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCCh-HHHHHHhcCCc
Q 039376           84 RQQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGT-LFHSMANINED  159 (289)
Q Consensus        84 ~~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t-~Lh~A~~~g~~  159 (289)
                      ..+.++..++.+++++|+++|+++   +..|.||||+|+ .|+.+++++|++ .+++++.+ +..|.| |||+|+..|+ 
T Consensus        15 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~-~g~~~~~~-d~~g~ttpL~~A~~~~~-   90 (156)
T 1bi7_B           15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL-HGAEPNCA-DPATLTRPVHDAAREGF-   90 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT-TTCCCCCC-CTTTCCCHHHHHHHHTC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH-cCCCCCCc-CCCCCcHHHHHHHHCCC-
Confidence            345688899999999999999987   568999999985 999999999998 58999999 999999 9999999999 


Q ss_pred             hHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Q 039376          160 EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC  224 (289)
Q Consensus       160 ~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~  224 (289)
                        .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|.||.+-
T Consensus        91 --~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~  150 (156)
T 1bi7_B           91 --LDTLVVLHRA--GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEG  150 (156)
T ss_dssp             --HHHHHHHHHH--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             --HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCccccc
Confidence              9999999999  9999999999999999999999999999999999995 9999999999763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=3.1e-22  Score=141.22  Aligned_cols=93  Identities=30%  Similarity=0.461  Sum_probs=81.0

Q ss_pred             CCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Q 039376          145 SCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHC  224 (289)
Q Consensus       145 ~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~  224 (289)
                      .|+||||+|+..|+   .+++++|++.  |++++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+
T Consensus         1 ~g~t~L~~A~~~~~---~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCC---HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence            37889999999998   8999999988  8888888888999999999999999999999999885 8888889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCC
Q 039376          225 AARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       225 A~~~~~~~~~~~Ll~~g~~  243 (289)
                      |+..|+.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999988875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=3.8e-22  Score=175.32  Aligned_cols=148  Identities=18%  Similarity=0.210  Sum_probs=119.2

Q ss_pred             CCchHHHHHHHc-CCHHHHHHHHhhCCCCcccccC--CCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376          110 GEHPQLRRALVR-KDWKEVERFISENPDTLYAKFT--ESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT  186 (289)
Q Consensus       110 ~g~t~Lh~A~~~-g~~~~v~~ll~~~~~~~~~~~~--~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t  186 (289)
                      .+.|+||+|+.. |+.+++++|+. .+++++.. +  ..|.||||+|+..|+   .+++++|++.  |++++.+|..|+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~--Gadvn~~d~~G~T  270 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALA-HGADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQN--GANVNQADSAGRG  270 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHH-cCCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHc--CCCCCCCCCCCCC
Confidence            456899999999 99999999998 68999988 6  789999999999999   9999999999  9999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHH
Q 039376          187 PLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLE  266 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~  266 (289)
                      |||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..++.+++++|+.++....       .....+..+.++++
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~-------~~~~~~~~~~t~l~  342 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREA-------EAAQGQAGDETYLD  342 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-------cccccCCCCCCHHH
Confidence            999999999999999999999996 9999999999999999999999999998885533       00134456777777


Q ss_pred             HHHHhC
Q 039376          267 ILIEFN  272 (289)
Q Consensus       267 ~a~~~g  272 (289)
                      ++....
T Consensus       343 i~~~~~  348 (368)
T 3jue_A          343 IFRDFS  348 (368)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            765443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=8.2e-22  Score=167.19  Aligned_cols=126  Identities=18%  Similarity=0.218  Sum_probs=117.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcc------cccCCCCChHHHHHHhc---CCchHHHHHHHHHhccCCCCccccCC
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLY------AKFTESCGTLFHSMANI---NEDEAHRLLDEFLDMISPLDLEETDT  182 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~------~~~~~~~~t~Lh~A~~~---g~~~~~~~v~~Ll~~~~g~~~~~~~~  182 (289)
                      .++|+.|++.|+.+.++.++. .+.+++      .. +..|.||||+|+..   |+   .+++++|++.  |++++.+|.
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~--ga~in~~d~  203 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYA-DGVDLTEKIPLANG-HEPDETALHLAVRSVDRTS---LHIVDFLVQN--SGNLDKQTG  203 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-TTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTT---HHHHHHHHHH--CSCTTCCCT
T ss_pred             hhhhhhHhhhcccHHHHHHHH-hhcchhhhcccccc-ccCCCCcchHHHHhcccch---HHHHHHHHHC--CCCccccCC
Confidence            479999999999999999998 477743      33 77899999999999   88   9999999999  999999999


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      .|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       204 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          204 KGSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999995 9999999999999999999999999999999754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=3.2e-24  Score=189.14  Aligned_cols=157  Identities=10%  Similarity=0.018  Sum_probs=128.3

Q ss_pred             cCCHHHHHHHHHcCCcCCCCCchHHHHHHHcCCHHHHHHHHhhCCCCc---ccccCCCCChHHHHHHhcCCchHHHHHHH
Q 039376           91 KTSEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTL---YAKFTESCGTLFHSMANINEDEAHRLLDE  167 (289)
Q Consensus        91 ~~~~~~~~~Ll~~g~~~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~---~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~  167 (289)
                      .+..+..++++++|.    .+.||||+|++.|+.+++++|++. ++..   ... +..+.||||+|+..|+   .++|++
T Consensus        76 ~~~~~~~~~l~~~g~----~~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~-~~~~~tpL~~Aa~~G~---~eiv~~  146 (376)
T 2aja_A           76 RNAKQLWSDAHKKGI----KSEVICFVAAITGCSSALDTLCLL-LTSDEIVKVI-QAENYQAFRLAAENGH---LHVLNR  146 (376)
T ss_dssp             TTCTTHHHHHHHHTC----CHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC---CHHHHHHHHHHHHTTC---HHHHHH
T ss_pred             CCCHHHHHHHHHcCC----CcCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHh-ccCCCCHHHHHHHcCC---HHHHHH
Confidence            356678888888865    456999999999999999999984 5421   122 4567899999999999   999999


Q ss_pred             HHhccCCCCc---cccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC--CCCCCCCHHHHHH-HcCCHHHHHHHHhcC
Q 039376          168 FLDMISPLDL---EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNM--RNRIGQCPIHCAA-RSGHRETVEYLLSVT  241 (289)
Q Consensus       168 Ll~~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~--~~~~g~t~L~~A~-~~~~~~~~~~Ll~~g  241 (289)
                      |++.  |+++   +..+.. .||||+|+..|+.+++++|+++|+++ +.  .+..|+||||+|+ ..|+.+++++|+++|
T Consensus       147 Ll~~--gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          147 LCEL--APTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHS--CTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHhC--CCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            9999  8652   222233 89999999999999999999999985 66  7888999999999 999999999999976


Q ss_pred             CCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376          242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY  277 (289)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~  277 (289)
                      ++                 |.||+++|+.+|+.++.
T Consensus       223 a~-----------------~~taL~~Aa~~g~~evv  241 (376)
T 2aja_A          223 VM-----------------LAYAEIHEFEYGEKYVN  241 (376)
T ss_dssp             HH-----------------HHHHHHCTTTTTTTTHH
T ss_pred             Cc-----------------cchHHHHHHHCCCHHHH
Confidence            32                 67888888888887743

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.3e-22  Score=166.15  Aligned_cols=120  Identities=23%  Similarity=0.278  Sum_probs=113.6

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCCH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKNLPNMRNRIGQCP  221 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~g~t~  221 (289)
                      +..|.||||+|+..|+   .+++++|++.  |++++.++..|+||||+|+..|+.+++++|++. |+++ +.++..|+||
T Consensus        70 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tp  143 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGN---LSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTA  143 (222)
T ss_dssp             EEEESCHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCH
T ss_pred             ccccccccccccccCc---HHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCH
Confidence            5678999999999999   9999999998  999999999999999999999999999999999 9995 9999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          222 IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       222 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      ||+|+..|+.+++++|+++|++++          ..+..|.|||++|+..|..+++.
T Consensus       144 L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~~~~~~l~  190 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLLAKGARTD----------LRNIEKKLAFDMATNAACASLLK  190 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSC----------CCCTTSCCHHHHCCSHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc----------cccCCCCCHHHHhcchhHHHHHH
Confidence            999999999999999999999999          99999999999999888777443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1e-21  Score=156.17  Aligned_cols=116  Identities=27%  Similarity=0.329  Sum_probs=108.9

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCP  221 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~  221 (289)
                      +..|.||||+|+..|+   .+++++|++   +++++.++..|+||||+|+..|+.+++++|+++|+++ +.++ ..|+||
T Consensus        41 ~~~g~t~L~~A~~~g~---~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAARKAD---EQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHTTC---HHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCH
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCH
Confidence            4578999999999999   999999998   5889999999999999999999999999999999996 8888 899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          222 IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       222 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                      ||+|+..|+.+++++|+++|++++          ..+..|.|||++|+..+...
T Consensus       114 L~~A~~~~~~~~v~~Ll~~ga~~~----------~~d~~g~tpl~~A~~~~~~~  157 (183)
T 3deo_A          114 LHMAAGYVRPEVVEALVELGADIE----------VEDERGLTALELAREILKTT  157 (183)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTT----------CCCTTSCCHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHcCCCCc----------CCCCCCCCHHHHHHHhccCc
Confidence            999999999999999999999999          99999999999999887655

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=3.3e-21  Score=135.90  Aligned_cols=93  Identities=22%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT  189 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~  189 (289)
                      +|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.+|..|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~--ga~~~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEA--GADVNAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCccCCCCCCHHH
Confidence            47899999999999999999998 68999999 9999999999999999   9999999999  9999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCC
Q 039376          190 SAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      +|+..|+.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=8.9e-22  Score=168.84  Aligned_cols=133  Identities=17%  Similarity=0.067  Sum_probs=115.7

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcCC---------CCCchHHHHHHHc---CCHHHHHHHHhhCCCCcccccCCCCChHHHH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKVD---------LGEHPQLRRALVR---KDWKEVERFISENPDTLYAKFTESCGTLFHS  152 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~~---------~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~  152 (289)
                      ...++..++.+.++.|++.|++++         ..|.||||+|+..   |+.+++++|++. +++++.+ +..|.||||+
T Consensus       155 L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~-d~~G~TpLh~  232 (301)
T 2b0o_E          155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAK-AADGNTALHY  232 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCC-CTTCCCHHHH
T ss_pred             HhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCC-CCCCCCHHHH
Confidence            445888999999999999998864         4789999999997   899999999995 8999999 9999999999


Q ss_pred             HHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH
Q 039376          153 MANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHR  231 (289)
Q Consensus       153 A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~  231 (289)
                      |+..|+   .+++++|++.  |++++.+|..|.||||+|+..|+.+++++|+++|++       .|.||||+|+.+|+.
T Consensus       233 A~~~g~---~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          233 AALYNQ---PDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHTTC---HHHHHHHHHT--TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             HHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            999999   9999999999  999999999999999999999999999999999876       478999999998864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=8.9e-22  Score=144.35  Aligned_cols=107  Identities=23%  Similarity=0.297  Sum_probs=96.0

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                      +..|.||||+|+..|+   .+++++|++.  |++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|+|||
T Consensus         6 d~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl   79 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGH---AEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPE   79 (115)
T ss_dssp             SCSSCCHHHHHHHHTC---HHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTT
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHH
Confidence            7889999999999999   9999999998  8999999999999999999999999999999999995 89999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHH
Q 039376          223 HCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLL  265 (289)
Q Consensus       223 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l  265 (289)
                      |+|+..++.+++++|+++|++++          ..+..|.+|-
T Consensus        80 ~~A~~~~~~~~~~~Ll~~ga~~n----------~~~~~~~~~~  112 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDAKGADVN----------ARSWGSSHHH  112 (115)
T ss_dssp             HHHHTTTCHHHHHHHHTTSSSHH----------HHSCCCC---
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCC----------cCCccccccc
Confidence            99999999999999999999999          7777777653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=5.4e-21  Score=159.07  Aligned_cols=113  Identities=27%  Similarity=0.354  Sum_probs=103.9

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCCCH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN-RIGQCP  221 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~-~~g~t~  221 (289)
                      +..|.||||+|+..|+   .+++++|++   +++++.++..|+||||+|+..|+.+++++|+++|+++ +.++ ..|+||
T Consensus        42 ~~~g~t~L~~A~~~g~---~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~  114 (244)
T 3ui2_A           42 VSEYETPWWTAARKAD---EQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTA  114 (244)
T ss_dssp             HHHHHHHHHHHHTTTC---HHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCH
T ss_pred             ccCCCCHHHHHHHcCC---HHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCH
Confidence            4578999999999999   999999998   5899999999999999999999999999999999996 8888 789999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhC
Q 039376          222 IHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFN  272 (289)
Q Consensus       222 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g  272 (289)
                      ||+|+..|+.+++++|+++|++++          ..+..|.||||+|+..+
T Consensus       115 L~~A~~~g~~~~v~~Ll~~ga~~~----------~~d~~g~t~l~~A~~~~  155 (244)
T 3ui2_A          115 LHMAAGYVRPEVVEALVELGADIE----------VEDERGLTALELAREIL  155 (244)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTCCCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCcHHHHHHHHH
Confidence            999999999999999999999999          77778888888777543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=1.5e-19  Score=153.14  Aligned_cols=154  Identities=17%  Similarity=0.076  Sum_probs=127.3

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCC-----cccc------------------c-------CCCCChHHHHHHhcC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDT-----LYAK------------------F-------TESCGTLFHSMANIN  157 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~-----~~~~------------------~-------~~~~~t~Lh~A~~~g  157 (289)
                      |..+.+.++++...|+..+.+++.. .-..     +...                  .       .....++|+.|+..|
T Consensus        63 d~~~~~~l~~~~~~GN~~~n~i~e~-~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           63 DVLGTSELLLAKNIGNAGFNEIMEC-CLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             SCCCGGGGHHHHHSCHHHHHHHHTT-TCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHcCcHHHHHHHHh-hCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            6678889999998888776664432 1100     0000                  0       011246899999999


Q ss_pred             CchHHHHHHHHHhccCCCC------ccccCCCCCCHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Q 039376          158 EDEAHRLLDEFLDMISPLD------LEETDTSGGTPLTSAAIV---GNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARS  228 (289)
Q Consensus       158 ~~~~~~~v~~Ll~~~~g~~------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~  228 (289)
                      .   .+.+..++..  |.+      ++..+..|.||||+|+..   |+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus       142 d---~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          142 D---IFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             C---HHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHT
T ss_pred             c---cHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHc
Confidence            9   9999999998  888      445588999999999999   8999999999999996 99999999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccc
Q 039376          229 GHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYT  278 (289)
Q Consensus       229 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~  278 (289)
                      |+.+++++|+++|++++          ..+..|.||||+|+..|+.++..
T Consensus       216 g~~~~v~~Ll~~gad~~----------~~d~~g~tpL~~A~~~~~~~~v~  255 (278)
T 1dcq_A          216 DNAECLKLLLRGKASIE----------IANESGETPLDIAKRLKHEHCEE  255 (278)
T ss_dssp             TCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHcCCCCC----------CccCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999          99999999999999999987543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=5.9e-21  Score=139.92  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=99.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      |..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..++   .+++++|++.  |++++.++..|.||
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~--g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAK--GADVNARSKDGNTP   78 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTT--TCCTTCCCTTCCCT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHc--CCCCcccCCCCCCH
Confidence            6789999999999999999999998 58899998 9999999999999999   9999999999  99999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                      ||+|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence            99999999999999999999995 99999998874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=8e-20  Score=160.49  Aligned_cols=122  Identities=20%  Similarity=0.186  Sum_probs=113.5

Q ss_pred             CCCCChHHHHHHhc-CCchHHHHHHHHHhccCCCCccccC--CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC
Q 039376          143 TESCGTLFHSMANI-NEDEAHRLLDEFLDMISPLDLEETD--TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ  219 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~-g~~~~~~~v~~Ll~~~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~  219 (289)
                      ...+.|+||.|+.. ++   .+++++|++.  |++++..+  ..|.||||+|+..|+.+++++|+++|+++ +..|..|+
T Consensus       196 ~~~~~t~L~~Aa~~~g~---~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~  269 (368)
T 3jue_A          196 SLHPGALLFRASGHPPS---LPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGR  269 (368)
T ss_dssp             -CCHHHHHHHHTSSSCC---HHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             cCCCCcHHHHHHHccCC---HHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence            34566899999999 99   9999999999  99999988  89999999999999999999999999996 99999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          220 CPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       220 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      ||||+|+..|+.+++++|+++|++++          ..+..|.|||++|+..|+.++...+
T Consensus       270 TpLh~A~~~g~~~~v~~LL~~Gad~~----------~~d~~G~TpL~~A~~~g~~~iv~lL  320 (368)
T 3jue_A          270 GPLHHATILGHTGLACLFLKRGADLG----------ARDSEGRDPLTIAMETANADIVTLL  320 (368)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHCcCCCC----------CcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999          9999999999999999998865444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=2.1e-18  Score=125.44  Aligned_cols=89  Identities=19%  Similarity=0.331  Sum_probs=69.9

Q ss_pred             CCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHH
Q 039376          143 TESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPI  222 (289)
Q Consensus       143 ~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L  222 (289)
                      +..|.||||+|+..|+   .+++++|++.  |++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|+|||
T Consensus        21 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl   94 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQ---DDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAF   94 (110)
T ss_dssp             -CCHHHHHHHHHHHTC---HHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             CCccchHHHHHHHcCC---HHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHH
Confidence            5677788888888888   8888888877  7777777777888888888888888888888888774 77777888888


Q ss_pred             HHHHHcCCHHHHHHH
Q 039376          223 HCAARSGHRETVEYL  237 (289)
Q Consensus       223 ~~A~~~~~~~~~~~L  237 (289)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            888888888877766

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=6.5e-18  Score=122.77  Aligned_cols=90  Identities=22%  Similarity=0.204  Sum_probs=84.7

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCC
Q 039376          107 VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGT  186 (289)
Q Consensus       107 ~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t  186 (289)
                      .+..|.||||+|+..|+.+++++|++ .+++++.+ +..|.||||+|+..|+   .+++++|++.  |++++.++..|+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~--ga~~~~~d~~g~t   92 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEA--GADVXAQDKFGKT   92 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHc--CCCccccccCCCc
Confidence            37789999999999999999999998 58999999 9999999999999999   9999999999  9999999999999


Q ss_pred             HHHHHHHhCCHHHHHHH
Q 039376          187 PLTSAAIVGNTKAAKIL  203 (289)
Q Consensus       187 ~L~~A~~~g~~~~v~~L  203 (289)
                      |||+|+..|+.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.003

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 2/125 (1%)

Query: 115 LRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP 174
           L  A  +   + ++  + E    + A        L H++ + ++ +   +    LD    
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD--HG 209

Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
            D+      G TPL  A    +    + L++      N  +  G+  +  A     ++  
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 235 EYLLS 239
           E L  
Sbjct: 270 ELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
               L  A    +    + L++   N+       G  P+H A +    + VE LL
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 40/133 (30%)

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVK-------------------------------Y 206
           E     G T L  AA  G+ +  KIL+                                 
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

Query: 207 NKNL------PNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNP--FAG 258
              L       N+R   G+ P+  A    H   V+ LL    +E  D+          A 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

Query: 259 ECG-LKLLEILIE 270
           E    K+ E+L +
Sbjct: 262 ELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKYNKNL---------PNMRNRIGQCPIHCAARSGHR 231
           D  G T    AA+ G  KA K L K   N+              + G   +  AA  GH 
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 232 ETVEYLLSVTGVE 244
           E ++ LL   G +
Sbjct: 162 EVLKILLDEMGAD 174

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM 171
                 +    D + +   + ++   +  +       L  ++   +     RLL++    
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE--- 242

Query: 172 ISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN 215
              +++ +TD+ G T L  A  +   K A++L K   +  +  +
Sbjct: 243 --HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TDCGD 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 4e-10
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL 237
                 G +PL  AA  G+T    +L+K   + PN  +  G  P+  A R G+    + L
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 382

Query: 238 LSVT 241
             VT
Sbjct: 383 KVVT 386

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           TPL  A+ +G+    K L++   + PN+ N   + P+H AAR+GH E  +YLL 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQ 54

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
               ++    TPL  AA  G+T+ AK L++      N + +  Q P+HCAAR GH   V+
Sbjct: 25  SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVK 83

Query: 236 YLLS 239
            LL 
Sbjct: 84  LLLE 87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 178 EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL 237
                 G TPL  AA  G  + A++L++ + + PN   + G  P+H A    + + V+ L
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 238 LS 239
           L 
Sbjct: 185 LP 186

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 120 VRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEE 179
           V  +  ++ + +     + ++        L  +      + A  LL       +      
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE----- 227

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
               G TPL  AA  G+ +   +L+    N  N+ N+ G  P+H  A+ GH    + L+ 
Sbjct: 228 -SVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 6e-10
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
            D  G TP+  AA  G  +    L++   +     +         A  + H   V+   
Sbjct: 217 QDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
             +     G T L  AA V N    K LV    +  + ++  G+ PI  AA+ G  E V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 236 YLLS 239
           YL+ 
Sbjct: 239 YLIQ 242

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 186 TPLT-SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           +P+       G+    + + + + N+ + R+   +  +H  A +   E  E L+ 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIV 54

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 26/156 (16%), Positives = 44/156 (28%), Gaps = 13/156 (8%)

Query: 127 VERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMIS-----PLDLEETD 181
            + FIS N  +L     +    +F       E     L   +            D  +  
Sbjct: 28  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG 87

Query: 182 TSGGTPLTSAAIVGNTKAAKI---LVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
                    AAI G + A      L+  ++ +  +           AA +GH   +  L 
Sbjct: 88  IKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 239 SVTGVEEEDSHEKYSN----PFAGECGLKLLEILIE 270
            +   E     +  +       A    L +L  L E
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 9/72 (12%), Positives = 15/72 (20%), Gaps = 4/72 (5%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLP----NMRNRIGQCPIHCAARSGHR 231
                       L            + L+                     +  A R G++
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 232 ETVEYLLSVTGV 243
                LLS+  V
Sbjct: 331 GACALLLSIPSV 342

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 14/184 (7%)

Query: 112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM 171
             Q+R+ L         R   +     + K  +S    F +            LD    +
Sbjct: 58  MEQVRQLLCLYY-AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSS----ALDTLCLL 112

Query: 172 ISP-LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPN-MRNRIGQCPIHCAARSG 229
           ++    ++            AA  G+      L +        M           AA +G
Sbjct: 113 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG 172

Query: 230 HRETVEYLLSVTGVEEEDSHEKYSNPFA------GECGLKLLEILIEFNFLGQYTCNTLS 283
           H   +  L  +    E  +  +  N +A      G     ++  L++   +  Y      
Sbjct: 173 HLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEF 231

Query: 284 SNMH 287
               
Sbjct: 232 EYGE 235

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 181 DTSGGTPLTSAAIVGNTKAAKILVKY--NKNLPNMRNRIGQCPIHCAARSGH 230
              G T L  A I  +      L+ +       +++N +GQ  +H AA  G 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE 57

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE 245
           TPL  A         ++L+K   + P  R   G+ P+  A    +      L +    E 
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

Query: 246 ED 247
           ED
Sbjct: 253 ED 254

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDM 171
                 A  +     +  +I +  +      T    +  +      +D     LD    +
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 172 ISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA 226
            + L+    D++G T L  AA +GN      L+ Y  + P + N+ G  P+   A
Sbjct: 249 ANMLN--AQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 2e-06
 Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 167 EFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILV--KYNKNLPNMRNRIGQCPIHC 224
            ++       ++       +              + L       N+ N ++  G   ++ 
Sbjct: 206 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 265

Query: 225 AARSGHRETVEYLLS 239
           AAR G+   V+ LL 
Sbjct: 266 AARLGNISIVDALLD 280

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 115 LRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP 174
           L+R L  +  +      +++ +      + +      S  ++ ++      +  L++  P
Sbjct: 43  LQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP 102

Query: 175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
           +D       G TPL     + N +  K LVK+  N     + +G+  +  A +S +
Sbjct: 103 VD-----EHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVN 152

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 1/117 (0%)

Query: 123 DWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT 182
           +         E       +   +   +    A   E+               ++      
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197

Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
           SGGT L  AA  G T+  K+L++   +  N+++  G  P+H AA  G  E    L+ 
Sbjct: 198 SGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE 253

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 93  SEDWFREMVETGVKVDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHS 152
            E+   E+++  V     +    R+   R   ++  ++++                L  +
Sbjct: 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVA 206

Query: 153 MANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPN 212
            A    +    L      + +  D+   D  G TPL +AA  G  +A +ILV+   +   
Sbjct: 207 AAKGYTEVLKLL------IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-ME 259

Query: 213 MRNRIGQCPIHCAARSGHRETVEYLLSV 240
             N++GQ     A      + + YL  +
Sbjct: 260 AVNKVGQTAFDVAD----EDILGYLEEL 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY 236
            G    +A   G+T+    L++   +  N  N  G   +H A    + + V++
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKF 91

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 148 TLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYN 207
           T  H  A     +   +L  +            DT G TPL  A      + AK+LV   
Sbjct: 138 TAMHRAAAKGNLKMIHILLYYKAST-----NIQDTEGNTPLHLACDEERVEEAKLLVSQG 192

Query: 208 KNLPNMRNRIGQCPIHCAARSGHRETVEYLL 238
            +   + N+  + P+  A   G    ++ ++
Sbjct: 193 AS-IYIENKEEKTPLQVAKG-GLGLILKRMV 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 3e-06
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 186 TPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGH 230
            PL  A +       + L+    +L   +++ G+ P+H +     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 20/91 (21%), Positives = 36/91 (39%)

Query: 180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            D     PL  AA VG+ K  ++L    K+  N +++ G  P+  A   GH +    L+ 
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 193

Query: 240 VTGVEEEDSHEKYSNPFAGECGLKLLEILIE 270
             G E +    K +         ++ +  + 
Sbjct: 194 KYGAEYDLVDNKGAKAEDVALNEQVKKFFLN 224

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 176 DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE 235
           + +  D    TPL  AA  G+ +A+K L+    N   + + + + P   A+   H + V 
Sbjct: 148 NRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVR 206

Query: 236 YL 237
            L
Sbjct: 207 LL 208

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETV 234
           SG + L SA+  G     + LV+   +  +++N     P+  A      + +
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNL---PNMRNRIGQCPIHCAARSGH 230
           G TPL  A + GN  A   LV   +      ++ N + Q P+H A  +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 35/127 (27%)

Query: 148 TLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIV---GNTKAAKILV 204
           +L  ++   +     +   + +D+   + L        T L  A       +      LV
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 205 KYNKNLP--------------------------------NMRNRIGQCPIHCAARSGHRE 232
           + + NL                                  + N  G+ P+  A R  H  
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 233 TVEYLLS 239
             E L  
Sbjct: 129 CEELLTQ 135

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 3e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 206 YNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS 239
                 ++R+  G+ P+  A   GHR+   YL +
Sbjct: 90  RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 7/28 (25%), Positives = 9/28 (32%)

Query: 212 NMRNRIGQCPIHCAARSGHRETVEYLLS 239
             RN  G      A   G  E V  + +
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 8e-05
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 211 PNMRNRIGQCPIHCAARSGHRETVEYLLS 239
            + R+  G  P+  A + G ++ V+ L  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 1e-04
 Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL 237
             T L  A    + +  ++L+KY  +  + +++  +     +  +G+ +  E L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 6/77 (7%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS---- 239
           G T L  A  + N     +L+K   +  N     G  P             + L      
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 240 -VTGVEEEDSHEKYSNP 255
            +  + E +  E Y   
Sbjct: 204 NLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 184 GGTPLTSAAIVGNTKAAKILVKY---NKNLPNMRNRIGQCPIHCAARSGH 230
           G + L  A I         +++    +    N +N + Q P+H A  +  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 3/34 (8%), Positives = 8/34 (23%)

Query: 207 NKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV 240
                   +             G+ +  ++L  V
Sbjct: 92  AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.81

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.9e-31  Score=217.07  Aligned_cols=181  Identities=16%  Similarity=0.124  Sum_probs=159.0

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCC
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINE  158 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (289)
                      .+.|+..++.+++++|+++|++.      |..|.||||+|+..|+.+++++|++ .|++++.+ +..|.||||+|+..++
T Consensus        13 Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~i~~~-d~~g~tpL~~A~~~~~   90 (255)
T d1oy3d_          13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVA-ERGGHTALHLACRVRA   90 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-CTTSCCHHHHHTTTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccc-cccccccc-ccccchhhhhhhccCc
Confidence            45688999999999999998763      5689999999999999999999998 58999999 9999999999999999


Q ss_pred             chHHHHHHHHHhcc---------------------------------------------CCCCccccCCCCCCHHHHHHH
Q 039376          159 DEAHRLLDEFLDMI---------------------------------------------SPLDLEETDTSGGTPLTSAAI  193 (289)
Q Consensus       159 ~~~~~~v~~Ll~~~---------------------------------------------~g~~~~~~~~~g~t~L~~A~~  193 (289)
                         .+++++|++..                                             .+.+++.++..|.||||+|++
T Consensus        91 ---~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          91 ---HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             ---HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             ---hHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence               99999986531                                             012234567889999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376          194 VGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF  273 (289)
Q Consensus       194 ~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~  273 (289)
                      .++.+++++|++.+++.....+..|+||||+|+..|+.+++++|+++|++++          .++..|.||||+|+.+|+
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin----------~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT----------ARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHTSSC
T ss_pred             ccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHHCCC
Confidence            9999999999999998644567889999999999999999999999999999          999999999999999999


Q ss_pred             CCccccc
Q 039376          274 LGQYTCN  280 (289)
Q Consensus       274 ~~~~~~~  280 (289)
                      .++...+
T Consensus       238 ~~i~~~L  244 (255)
T d1oy3d_         238 PILARLL  244 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8865444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-29  Score=204.20  Aligned_cols=172  Identities=19%  Similarity=0.171  Sum_probs=160.1

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.|+..++.+++++++..+...   +..+.++++.++..|+.+++++|++ .+.+++.+ +..|.||||+|+..|+   
T Consensus        41 Lh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~-~~~d~~~~-d~~g~tpL~~A~~~~~---  115 (223)
T d1uoha_          41 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAV-NQNGCTPLHYAASKNR---  115 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-CTTCCCHHHHHHHHTC---
T ss_pred             HHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhc-cCceeEee-CCCCCchhhHHHHcCC---
Confidence            45688999999999999998765   4577899999999999999999998 57899998 9999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+++++|++.  |++++.++..|.||||+|+..++.+++++|++.+.++ +.++..|+||||+|+..|+.+++++|+++|
T Consensus       116 ~e~~~~Ll~~--g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         116 HEIAVMLLEG--GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHC--CCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHHCC
Confidence            9999999999  9999999999999999999999999999999999996 999999999999999999999999999999


Q ss_pred             CCcccccccCCCCcccccccchHHHHHHHhCCCC
Q 039376          242 GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLG  275 (289)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~  275 (289)
                      ++++          ..+.+|+||||+|. .|+.+
T Consensus       193 ad~~----------~~d~~g~tpl~~A~-~~~~~  215 (223)
T d1uoha_         193 ASIY----------IENKEEKTPLQVAK-GGLGL  215 (223)
T ss_dssp             CCSC----------CCCTTSCCHHHHCC-TTHHH
T ss_pred             CCCC----------CCCCCCCCHHHHHH-CCCHH
Confidence            9999          99999999999984 56554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.3e-28  Score=200.14  Aligned_cols=193  Identities=16%  Similarity=0.125  Sum_probs=160.2

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhccccccHHHhcCCHHHHHHHHHcCCcC
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQIKQVKTSEDWFREMVETGVKV  107 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~  107 (289)
                      .....++...++.+++++|++.++++.......           .       ......+.|+..++.+++++|+++|+++
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~-----------~-------~g~TpL~~A~~~g~~~iv~~Ll~~ga~i   71 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-----------D-------LGQTALHLAAILGEASTVEKLYAAGAGV   71 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-----------T-------TSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcC-----------C-------CCCCccchHHhhcccccccccccccccc
Confidence            345778888999999999999987764333110           0       0112345678889999999999999987


Q ss_pred             ---CCCCchHHHHHHHcCCHHHHHHHHhhCCC----------------------------------------------Cc
Q 039376          108 ---DLGEHPQLRRALVRKDWKEVERFISENPD----------------------------------------------TL  138 (289)
Q Consensus       108 ---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~----------------------------------------------~~  138 (289)
                         |..|.||||+|+..|+.+++++|++....                                              .+
T Consensus        72 ~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (255)
T d1oy3d_          72 LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL  151 (255)
T ss_dssp             SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT
T ss_pred             cccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccc
Confidence               66899999999999999999988753211                                              11


Q ss_pred             ccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccc-cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCC
Q 039376          139 YAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEE-TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRI  217 (289)
Q Consensus       139 ~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~  217 (289)
                      +.+ +..|.||||+|+..++   .+++++|++.  +++.+. ++..|.||||+|+..|+.+++++|+++|+++ +.+|..
T Consensus       152 n~~-d~~g~TpLh~A~~~~~---~~~v~~Ll~~--~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~  224 (255)
T d1oy3d_         152 EAE-NYDGHTPLHVAVIHKD---AEMVRLLRDA--GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYG  224 (255)
T ss_dssp             TCC-CTTSCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             ccc-cccCcccccccccccc---cccccchhcc--cccccccccccccccccccccccHHHHHHHHHHCCCCC-CCCCCC
Confidence            223 6779999999999999   9999999998  777665 4678999999999999999999999999996 999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          218 GQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       218 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      |+||||+|+..++.+++++|+++||+..
T Consensus       225 g~t~L~~A~~~~~~~i~~~Ll~~Ga~~~  252 (255)
T d1oy3d_         225 GRTPLGSALLRPNPILARLLRAHGAPEP  252 (255)
T ss_dssp             SCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999854

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.1e-28  Score=196.46  Aligned_cols=175  Identities=15%  Similarity=0.145  Sum_probs=158.3

Q ss_pred             HHhcCCHHHHHHHHHcC-CcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           88 KQVKTSEDWFREMVETG-VKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        88 ~~~~~~~~~~~~Ll~~g-~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      ++..|+++.++.++..+ ..+   |..|+||||+|+..|+.+++++++.. +...... ...+.++++.++..++   .+
T Consensus        10 ~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~---~~   84 (223)
T d1uoha_          10 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK-DDAGWSPLHIAASAGR---DE   84 (223)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCC-CTTCCCHHHHHHHHTC---HH
T ss_pred             HHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccc-ccccccc-cccccccccccccccc---cc
Confidence            56788888887777654 333   77899999999999999999999985 5666666 7788999999999999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGV  243 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  243 (289)
                      ++++|++.  +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++.+++++|...|.+
T Consensus        85 i~~~Ll~~--~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          85 IVKALLGK--GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             HHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hhHHHhcc--CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence            99999999  8999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             cccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          244 EEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       244 ~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      ++          ..+.+|+||||+|+..|..++...+
T Consensus       162 i~----------~~d~~g~TpL~~Aa~~g~~~~v~~L  188 (223)
T d1uoha_         162 TN----------IQDTEGNTPLHLACDEERVEEAKLL  188 (223)
T ss_dssp             SC----------CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ee----------eccCCCCceeccccccCcHHHHHHH
Confidence            99          9999999999999999998854443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-27  Score=208.81  Aligned_cols=232  Identities=17%  Similarity=0.198  Sum_probs=200.7

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCch---------hhhhcCChhhhhhcccCCCCccchhccccccH---HHhcCCHHHH
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSS---------KLVVGKKEDEITEMKPANDPIIEVKSHERQQI---KQVKTSEDWF   97 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~   97 (289)
                      ........+..+++++|++.+.++..         ..+...+..++.+++...++..+.....+..+   .......+..
T Consensus       135 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~  214 (408)
T d1n11a_         135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA  214 (408)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhh
Confidence            44455667889999999998855532         34566677788888888887777666655553   5566778888


Q ss_pred             HHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC
Q 039376           98 REMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP  174 (289)
Q Consensus        98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g  174 (289)
                      ..++..+...   +..|.|||++|+..++.+++++++. .+...+.. +..|.||++.|+..++   .+++++|++.  |
T Consensus       215 ~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~-~~~~~~~~-~~~g~~~l~~a~~~~~---~~i~~~Ll~~--g  287 (408)
T d1n11a_         215 RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLG-NKSGLTPLHLVAQEGH---VPVADVLIKH--G  287 (408)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHH--T
T ss_pred             hhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhc-cccccccc-cCCCCChhhhhhhcCc---HHHHHHHHHC--C
Confidence            8888876543   6688999999999999999999888 57778877 8899999999999999   9999999999  9


Q ss_pred             CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCC
Q 039376          175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSN  254 (289)
Q Consensus       175 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  254 (289)
                      ++++..+..+.||||.++..+..++++++++.|+++ +.+|..|+||||+|++.|+.+++++|+++|++++         
T Consensus       288 ~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n---------  357 (408)
T d1n11a_         288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN---------  357 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC---------
T ss_pred             CccccccccccccchhhcccCcceeeeeeccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------
Confidence            999999999999999999999999999999999996 9999999999999999999999999999999999         


Q ss_pred             cccccccchHHHHHHHhCCCCcccc
Q 039376          255 PFAGECGLKLLEILIEFNFLGQYTC  279 (289)
Q Consensus       255 ~~~~~~g~~~l~~a~~~g~~~~~~~  279 (289)
                       +.+.+|.||||+|+.+|+.++..+
T Consensus       358 -~~d~~G~t~L~~A~~~~~~~iv~~  381 (408)
T d1n11a_         358 -EVSSDGTTPLAIAKRLGYISVTDV  381 (408)
T ss_dssp             -CCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             -CCCCCCCCHHHHHHHcCCHHHHHH
Confidence             999999999999999999885443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=4.5e-27  Score=198.21  Aligned_cols=166  Identities=19%  Similarity=0.252  Sum_probs=141.2

Q ss_pred             HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           87 IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        87 ~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      .|+..|++++++.|+++|+++   |..|.||||+|+..|+.+++++|++ .+.+.... +..+.+||++|+..++   .+
T Consensus        46 ~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~-~~~~~~~~-~~~~~~~L~~a~~~~~---~~  120 (291)
T d1s70b_          46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-DNEGWIPLHAAASCGY---LD  120 (291)
T ss_dssp             HHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---HH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecc-cccccccc-cccccccccccccccc---cc
Confidence            467778888888888888877   5578888888888888888888887 46776666 7778888888888888   88


Q ss_pred             HHHHHHhccCCCCc------------------------------------------------------------cccCCC
Q 039376          164 LLDEFLDMISPLDL------------------------------------------------------------EETDTS  183 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~------------------------------------------------------------~~~~~~  183 (289)
                      ++++|++.  |...                                                            ...+..
T Consensus       121 ~~~~l~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         121 IAEYLISQ--GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHT--TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             hhhccccc--CcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            88888765  3322                                                            224567


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccch
Q 039376          184 GGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLK  263 (289)
Q Consensus       184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~  263 (289)
                      |.||||+|+..|+.+++++|++.|+++ +.++..|+||||+|+..|+.+++++|+++|++++          ++|..|+|
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~----------~~d~~G~T  267 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDME----------AVNKVGQT  267 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCC
T ss_pred             CCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CcCCCCCC
Confidence            889999999999999999999999995 9999999999999999999999999999999999          99999999


Q ss_pred             HHHHHHH
Q 039376          264 LLEILIE  270 (289)
Q Consensus       264 ~l~~a~~  270 (289)
                      ||++|++
T Consensus       268 aL~~A~e  274 (291)
T d1s70b_         268 AFDVADE  274 (291)
T ss_dssp             TTTSCCS
T ss_pred             HHHHHHH
Confidence            9999865

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.6e-27  Score=190.17  Aligned_cols=169  Identities=19%  Similarity=0.227  Sum_probs=140.3

Q ss_pred             HHHHHHHHHcCCcC----CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc----------
Q 039376           94 EDWFREMVETGVKV----DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED----------  159 (289)
Q Consensus        94 ~~~~~~Ll~~g~~~----~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~----------  159 (289)
                      .+++++|+++|+++    |..|.||||+||+.|+.+++++|+. .++.++.+ +..+.++++.++..++.          
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~-~g~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLD-AGADANSQ-DNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHh-hccccccc-ccccccccccccccccccccccccccc
Confidence            36788888888776    3468888888888888888888887 57777776 66677777666644330          


Q ss_pred             ---------------------hHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCC
Q 039376          160 ---------------------EAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIG  218 (289)
Q Consensus       160 ---------------------~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g  218 (289)
                                           ......+.|...  +++++.++..|.|||++++..+...+++.+++.+.++ +..|..|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g  156 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITA--DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKD  156 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhh--cccccccCCCCCCcchhhcccCcceeeeeeccccccc-ccccccc
Confidence                                 003445555666  7888899999999999999999999999999999996 9999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCcc
Q 039376          219 QCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQY  277 (289)
Q Consensus       219 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~  277 (289)
                      .||||+|+..|+.+++++|+++|++++          +++..|+||||+|+++|+.++.
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n----------~~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANRE----------ITDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCC----------CcCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999999999999          9999999999999999998753

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=2e-27  Score=198.63  Aligned_cols=177  Identities=20%  Similarity=0.195  Sum_probs=146.7

Q ss_pred             cHHHhcCCHHHHHH--------HHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHH
Q 039376           86 QIKQVKTSEDWFRE--------MVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMA  154 (289)
Q Consensus        86 ~~~~~~~~~~~~~~--------Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~  154 (289)
                      ++|+..++.++++.        +++.|+++   |..|.||||+|++.|+.+++++|++ .|++++.+ +..|.|||++|+
T Consensus        38 h~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n~~-~~~g~t~l~~a~  115 (277)
T d2fo1e1          38 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY-NKSERSALHQAA  115 (277)
T ss_dssp             HHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-CTTCCCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccc-cccccccc-cccccccccchh
Confidence            34666666665544        46778887   5689999999999999999999999 58999998 999999999999


Q ss_pred             hcCCchHHHHHHHHHhcc---------------------------------------------CCCCccccCCCCCCHHH
Q 039376          155 NINEDEAHRLLDEFLDMI---------------------------------------------SPLDLEETDTSGGTPLT  189 (289)
Q Consensus       155 ~~g~~~~~~~v~~Ll~~~---------------------------------------------~g~~~~~~~~~g~t~L~  189 (289)
                      ..++   .+++.++....                                             .....+..+..|.|+||
T Consensus       116 ~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  192 (277)
T d2fo1e1         116 ANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH  192 (277)
T ss_dssp             HTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH
T ss_pred             hhcc---hhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccc
Confidence            9999   88877774421                                             00012334567899999


Q ss_pred             HHHHhCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHH
Q 039376          190 SAAIVGNTKAAKILVK-YNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEIL  268 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~-~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a  268 (289)
                      +++..++.+++++++. .+.++ +.++..|+||||+|+..|+.+++++|+++|++++          ..|.+|.||||+|
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin----------~~d~~G~T~L~~A  261 (277)
T d2fo1e1         193 YAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----------AVDATDHTARQLA  261 (277)
T ss_dssp             HHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----------CCCSSSCCHHHHH
T ss_pred             cccccccccccccccccccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC----------CcCCCCCCHHHHH
Confidence            9999999999987664 56664 8899999999999999999999999999999999          9999999999999


Q ss_pred             HHhCCCCccc
Q 039376          269 IEFNFLGQYT  278 (289)
Q Consensus       269 ~~~g~~~~~~  278 (289)
                      +.+|+.++..
T Consensus       262 ~~~~~~~iv~  271 (277)
T d2fo1e1         262 QANNHHNIVD  271 (277)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcCCHHHHH
Confidence            9999987543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.8e-27  Score=178.74  Aligned_cols=145  Identities=26%  Similarity=0.295  Sum_probs=94.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHH
Q 039376          114 QLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAI  193 (289)
Q Consensus       114 ~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~  193 (289)
                      .|+.||..|+.++|++||+..+.+++.+ +..|+||||+|+ .++   .+++++|++.  +.+++..+..|.+|+++++.
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~---~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGS---TAIALELLKQ--GASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-ccc---cccccccccc--cccccccccccccccccccc
Confidence            4666666666666666666556666666 666666666654 355   6666666666  56666666666666666666


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCC
Q 039376          194 VGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNF  273 (289)
Q Consensus       194 ~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~  273 (289)
                      .++.+++++++++|+++ +.++..|+||||+|+..|+.+++++|+ .|++++          .++.+|+|||++|+..|+
T Consensus        78 ~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~----------~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH----------RRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT----------CCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccc-ccccCCCCeeecccccccccccccccc-cccccc----------ccCCCCCCHHHHHHHcCC
Confidence            66666666666666664 666666666666666666666666655 456666          666666666666666666


Q ss_pred             CCcc
Q 039376          274 LGQY  277 (289)
Q Consensus       274 ~~~~  277 (289)
                      .++.
T Consensus       146 ~~iv  149 (156)
T d1bd8a_         146 QDLV  149 (156)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.6e-26  Score=174.61  Aligned_cols=149  Identities=17%  Similarity=0.165  Sum_probs=129.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA  191 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A  191 (289)
                      .||||.|++.|+.++|++||+. +++++ . +..|+||||+|+..++   .+++..++..  .......+..+.++++++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~-~~~g~t~L~~a~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGH---FSTTEVLLRA--GVSRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTC---HHHHHHHHTT--TCCTTCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-c-ccCCCccccccccccc---cccccccccc--cccccccccccccccccc
Confidence            3899999999999999999985 67665 4 7889999999999999   9999888887  566666777888899999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHh
Q 039376          192 AIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEF  271 (289)
Q Consensus       192 ~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~  271 (289)
                      +...+.+.+++++.++++. +.++..|+||||+|+..|+.+++++|+++|++++          ..+.+|.|||++|+.+
T Consensus        75 ~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~----------~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVH----------TQSKFCKTAFDISIDN  143 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHT
T ss_pred             cccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCc----------ccCCCCCCHHHHHHHc
Confidence            9999999999999999985 8899999999999999999999999999999998          8899999999999999


Q ss_pred             CCCCcccc
Q 039376          272 NFLGQYTC  279 (289)
Q Consensus       272 g~~~~~~~  279 (289)
                      |+.++..+
T Consensus       144 g~~eiv~l  151 (153)
T d1awcb_         144 GNEDLAEI  151 (153)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHh
Confidence            98875443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-25  Score=172.54  Aligned_cols=149  Identities=18%  Similarity=0.177  Sum_probs=138.5

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      .+.|+..+++++++.|+++|+++   |..|.||||+|+ .|+.+++++|++ .+++++.+ +..+.++++.++..++   
T Consensus         5 Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~-~~a~~~~~-~~~~~~~l~~~~~~~~---   78 (156)
T d1ihba_           5 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLL-RGANPDLK-DRTGFAVIHDAARAGF---   78 (156)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHHTC---
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccc-cccccccc-cccCcccccccccccc---
Confidence            35688999999999999999988   668999999885 799999999998 68999998 8999999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVT  241 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  241 (289)
                      .+.+.++++.  +.+++..+..|.+|+|+|+..++.+++++|+++++...+.++..|+||||+|+..++.+++++|+++|
T Consensus        79 ~~~~~~l~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999998  89999999999999999999999999999999988435899999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-26  Score=174.59  Aligned_cols=148  Identities=19%  Similarity=0.259  Sum_probs=138.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      +|||+||..|+.++|++|++ .|++++.+ +..|.||||+|+ .++   .+++++|++.  +++++.++..|.++++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~-d~~g~TpL~~A~-~~~---~ei~~~Ll~~--~a~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ-NNVNVNAQ-NGFGRTALQVMK-LGN---PEIARRLLLR--GANPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT-SCCCTTCC-CTTSCCHHHHCC-SSC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCcCcc-CCcccccccccc-ccc---cccccccccc--ccccccccccCcccccccc
Confidence            89999999999999999999 68999999 999999999886 789   9999999999  9999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCCcccccccchHHHHHHHh
Q 039376          193 IVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG-VEEEDSHEKYSNPFAGECGLKLLEILIEF  271 (289)
Q Consensus       193 ~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~~~~~~~~g~~~l~~a~~~  271 (289)
                      ..+..+.+.+|+..+.++ +..+..|.+|+|+|+..++.+++++|+++|+ +.+          .++.+|.||||+|+..
T Consensus        75 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~----------~~d~~g~TpL~~A~~~  143 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG----------HRNHKGDTACDLARLY  143 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT----------CCCTTSCCHHHHHHHT
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccccccccc----------ccCCCCCCHHHHHHHc
Confidence            999999999999999995 9999999999999999999999999999997 677          8899999999999999


Q ss_pred             CCCCcccc
Q 039376          272 NFLGQYTC  279 (289)
Q Consensus       272 g~~~~~~~  279 (289)
                      |+.++...
T Consensus       144 ~~~~iv~~  151 (156)
T d1ihba_         144 GRNEVVSL  151 (156)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            99886443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=171.47  Aligned_cols=145  Identities=16%  Similarity=0.169  Sum_probs=132.7

Q ss_pred             cHHHhcCCHHHHHHHHHc-CCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchH
Q 039376           86 QIKQVKTSEDWFREMVET-GVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEA  161 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~-g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~  161 (289)
                      ..|+..|++++++.|++. ++++   |..|.||||+|+ .|+.+++++|++ .+.+++.. +..|.+|+++++..++   
T Consensus         7 ~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~-~~~~~~~~-~~~~~~~l~~~~~~~~---   80 (156)
T d1bd8a_           7 SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK-QGASPNVQ-DTSGTSPVHDAARTGF---   80 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTTC---
T ss_pred             HHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccc-cccccccc-cccccccccccccccc---
Confidence            347788999999999986 5665   568999999987 588999999998 58889988 8899999999999999   


Q ss_pred             HHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          162 HRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       162 ~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      .++++++++.  +++++.++..|+||||+|++.|+.+++++|+ .|+++ +.+|..|+||||+|+..|+.+++++|++|
T Consensus        81 ~~~~~~~l~~--~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          81 LDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccc--ccccccccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999  8999999999999999999999999999888 68885 99999999999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.5e-27  Score=189.22  Aligned_cols=164  Identities=14%  Similarity=0.056  Sum_probs=138.7

Q ss_pred             HHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhcc
Q 039376           96 WFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMI  172 (289)
Q Consensus        96 ~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~  172 (289)
                      +++.+...|+++   |..|.||||+|++.|+.+++++|++ .+++++.+ +..|.||||+|+..++   .+++++|+.. 
T Consensus        21 li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~-~g~d~~~~-d~~g~t~l~~~~~~~~---~~~~~~l~~~-   94 (221)
T d1iknd_          21 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-DFRGNTPLHLACEQGC---LASVGVLTQS-   94 (221)
T ss_dssp             CCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-CTTCCCHHHHHHHHTC---HHHHHHHHHS-
T ss_pred             HHHHHHhCCCCcccCCCCCCcccccccccccccccccccc-cccccccc-cccccccccccccccc---ccccchhhhh-
Confidence            456666777766   6689999999999999999999988 68999998 9999999999999999   9999999986 


Q ss_pred             CCCC------ccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccc
Q 039376          173 SPLD------LEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEE  246 (289)
Q Consensus       173 ~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  246 (289)
                       +..      .......|.||||+|+..++.+.+++|+..|+.+....+..|.||||+|++.|+.+++++|+++|+|++ 
T Consensus        95 -~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~-  172 (221)
T d1iknd_          95 -CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-  172 (221)
T ss_dssp             -TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-
T ss_pred             -cccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc-
Confidence             433      333445789999999999999999999999998733344679999999999999999999999999999 


Q ss_pred             ccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          247 DSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       247 ~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                               .++.+|.|||++|+..+..++
T Consensus       173 ---------~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         173 ---------RVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             ---------CCCTTCCCGGGGCTTSSCHHH
T ss_pred             ---------ccCCCCCCHHHHHHHCCCHHH
Confidence                     999999999999998887664

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.7e-25  Score=181.91  Aligned_cols=201  Identities=15%  Similarity=0.104  Sum_probs=166.2

Q ss_pred             hhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhcccc---ccHHHhcCCHHHHHHHHHcCCcC
Q 039376           31 SRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHER---QQIKQVKTSEDWFREMVETGVKV  107 (289)
Q Consensus        31 ~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Ll~~g~~~  107 (289)
                      ...+...|+.++|+.|++.....                       ++.++..+   .++|+..++.+++++|+++|+++
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~~~~-----------------------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~   60 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSKPSL-----------------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV   60 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGG-----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCc-----------------------ccccCCCCCCHHHHHHHcCCccccchhhhhhccc
Confidence            34556677888888887654211                       11122222   34678889999999999999875


Q ss_pred             ------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCc--ccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccc
Q 039376          108 ------DLGEHPQLRRALVRKDWKEVERFISENPDTL--YAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEE  179 (289)
Q Consensus       108 ------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~--~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~  179 (289)
                            +..|.+|+|+++..+..++++.++.. +...  ... +..+.|+++.++..++   .+++.+|+..  +...+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~l~~~~~~~~---~~~~~~l~~~--~~~~~~  133 (229)
T d1ixva_          61 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIEN--GASVRI  133 (229)
T ss_dssp             CGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSS-SSCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHT--TCCSCC
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccc-ccccccccccccccch---hhhhhhhhhh--cccccc
Confidence                  45788999999999999999988874 4433  233 6788999999999999   9999999999  899999


Q ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCCcccc
Q 039376          180 TDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS-VTGVEEEDSHEKYSNPFAG  258 (289)
Q Consensus       180 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~  258 (289)
                      ++..|+||||+|+..|+.+++++|++.+...++.++..|+||||+|+.+|+.+++++|++ +|++++          +++
T Consensus       134 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~----------~~d  203 (229)
T d1ixva_         134 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD----------LVD  203 (229)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC----------CCC
T ss_pred             cCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCC----------CcC
Confidence            999999999999999999999999999854458999999999999999999999999996 699999          999


Q ss_pred             cccchHHHHHHHh
Q 039376          259 ECGLKLLEILIEF  271 (289)
Q Consensus       259 ~~g~~~l~~a~~~  271 (289)
                      .+|.|||++|+..
T Consensus       204 ~~g~t~l~~A~~~  216 (229)
T d1ixva_         204 NKGAKAEDVALNE  216 (229)
T ss_dssp             TTSCCTGGGCSCH
T ss_pred             CCCCCHHHHHhhH
Confidence            9999999988754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-26  Score=183.90  Aligned_cols=176  Identities=16%  Similarity=0.116  Sum_probs=149.2

Q ss_pred             ccHHHhcCCHHHHHHHHH----cCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcC
Q 039376           85 QQIKQVKTSEDWFREMVE----TGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANIN  157 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~----~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g  157 (289)
                      .+.|+..++.++++.|++    .|+++   |..|.||||+|+..|+.+++++|++ .+++.+.. ...+.++++.|...+
T Consensus         7 Lh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~ga~~~~~-~~~~~~~~~~a~~~~   84 (228)
T d1k1aa_           7 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMAL-DRHGQTAAHLACEHR   84 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccc-cccccccc-ccccccccccccccc
Confidence            346788899998888875    67776   5689999999999999999999998 68888888 888999999999888


Q ss_pred             CchHHHHHHHHHhcc-----------------------------------CCCC-ccccCCCCCCHHHHHHHhCCHHHHH
Q 039376          158 EDEAHRLLDEFLDMI-----------------------------------SPLD-LEETDTSGGTPLTSAAIVGNTKAAK  201 (289)
Q Consensus       158 ~~~~~~~v~~Ll~~~-----------------------------------~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~  201 (289)
                      +   .++++.+....                                   ...+ .......+.++|++|+..+...+++
T Consensus        85 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          85 S---PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             C---HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             c---ccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            8   77776664421                                   0011 1223457889999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCc
Q 039376          202 ILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQ  276 (289)
Q Consensus       202 ~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~  276 (289)
                      +++++|... +.++..|.||||+|+..|+.+++++|+++|++++          .++.+|.||||+|+++|+.++
T Consensus       162 ~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n----------~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         162 LLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS----------LKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             HHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCTTTTCSSHHHHHH
T ss_pred             hhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHhCCCccc
Confidence            999999995 8999999999999999999999999999999999          999999999999999887664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.1e-24  Score=179.00  Aligned_cols=212  Identities=13%  Similarity=0.087  Sum_probs=159.4

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchhh---------hhcCChhhhhhcccCCCCccchhc---cccccHHHhcCCHHHH
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSKL---------VVGKKEDEITEMKPANDPIIEVKS---HERQQIKQVKTSEDWF   97 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~   97 (289)
                      ...++...|..+++++|.+.+.......         +...+..+................   ......+...+....+
T Consensus        42 pL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  121 (285)
T d1wdya_          42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL  121 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhh
Confidence            4566777888889998888774332211         111111111111111111111111   2223346677888888


Q ss_pred             HHHHHcCCcC-------------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc-hHHH
Q 039376           98 REMVETGVKV-------------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED-EAHR  163 (289)
Q Consensus        98 ~~Ll~~g~~~-------------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~-~~~~  163 (289)
                      +.++....+.             +..|.||||+|++.|+.+++++|+++.+++++.. +..+.++++.+...+.. ...+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~  200 (285)
T d1wdya_         122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEA  200 (285)
T ss_dssp             HHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHH
T ss_pred             hhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccc-cCCCCcccccccccccchHHHH
Confidence            8888775543             3368999999999999999999998788999988 88898888776554431 2257


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKY-NKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTG  242 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  242 (289)
                      ++++|++.  |++++.++..|.||||+|+..|+.+++++|+++ |+++ +.+|.+|.||||+|++.|+.+++++|+++||
T Consensus       201 i~~~Li~~--ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~di-n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GA  277 (285)
T d1wdya_         201 ITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHHHT--TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHHHHC--CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            89999999  999999999999999999999999999999985 8885 9999999999999999999999999999999


Q ss_pred             Ccc
Q 039376          243 VEE  245 (289)
Q Consensus       243 ~~~  245 (289)
                      +++
T Consensus       278 d~n  280 (285)
T d1wdya_         278 STD  280 (285)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            999

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.4e-26  Score=167.02  Aligned_cols=121  Identities=21%  Similarity=0.250  Sum_probs=112.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCC-CHHH
Q 039376          111 EHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGG-TPLT  189 (289)
Q Consensus       111 g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~-t~L~  189 (289)
                      +.++||+|++.|+.+++++|++ .|++++.+ +..|.||+|+|+ .|+   .+++++|++.  |++++.++..+. ||||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~-~~~g~t~l~~a~-~g~---~~~v~~Ll~~--ga~~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLE-AGANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLH--GAEPNCADPATLTRPVH   74 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTT--TCCCCCCCTTTCCCHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHH-cCCccccc-cccccccccccc-ccc---cccccccccc--ccccccccccccccccc
Confidence            5689999999999999999998 58999999 999999999765 689   9999999999  999999998876 6999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          190 SAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      +|++.|+.+++++|+++|+++ +.+|..|+||||+|+.+|+.+++++|++.
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999996 99999999999999999999999999853

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.3e-24  Score=165.86  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=132.0

Q ss_pred             cHHHhcCCHHHHHHHHHcCCcC--CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHH
Q 039376           86 QIKQVKTSEDWFREMVETGVKV--DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHR  163 (289)
Q Consensus        86 ~~~~~~~~~~~~~~Ll~~g~~~--~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~  163 (289)
                      ..|+..|+.++++.|+++|++.  |..|+||||+|+..++.++++.++.. ....... ...+.++++.++...+   .+
T Consensus         7 ~~Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~---~~   81 (153)
T d1awcb_           7 LEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-TKVDRTPLHMAASEGH---AN   81 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CTTCCCHHHHHHHHTC---HH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCcccccCCCccccccccccccccccccccc-ccccccc-cccccccccccccccc---ce
Confidence            3477889999999999999976  67899999999999999999988874 4444555 6788899999999999   99


Q ss_pred             HHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 039376          164 LLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL  237 (289)
Q Consensus       164 ~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~L  237 (289)
                      ++++++..  +++++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.+|+.+++++|
T Consensus        82 ~~~~l~~~--~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeccccc--CCccccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999998  8999999999999999999999999999999999995 99999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.8e-24  Score=177.65  Aligned_cols=234  Identities=15%  Similarity=0.148  Sum_probs=189.5

Q ss_pred             hhhhhcCCchHHHHHHHhccCCCch----------hhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHH
Q 039376           31 SRLLDSKNEDEIVKMKQKDFAQPSS----------KLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWF   97 (289)
Q Consensus        31 ~~~~~~~~~~~iv~~L~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~   97 (289)
                      ...+-..|+.++|++|++.|++...          ..+...+..++.+++...+............   .+...+..+..
T Consensus         9 L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (285)
T d1wdya_           9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLL   88 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCcccc
Confidence            3445678999999999999965432          4556677778888888777666555444433   35677788888


Q ss_pred             HHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccc---------cCCCCChHHHHHHhcCCchHHHHH
Q 039376           98 REMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAK---------FTESCGTLFHSMANINEDEAHRLL  165 (289)
Q Consensus        98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~---------~~~~~~t~Lh~A~~~g~~~~~~~v  165 (289)
                      ..+++...+.   +..+.+++++|+..|+...+..++.. ..+.+..         ....|.||||+|++.|+   .+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~  164 (285)
T d1wdya_          89 KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVL  164 (285)
T ss_dssp             HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHH
T ss_pred             chhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhh-cccccccccchhhhhhhcccCchHHHHHHHcCC---HHHH
Confidence            8888876543   66889999999999999999988873 3333322         14578999999999999   9999


Q ss_pred             HHHHhccCCCCccccCCCCCCHHHHHHHhC----CHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-c
Q 039376          166 DEFLDMISPLDLEETDTSGGTPLTSAAIVG----NTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLS-V  240 (289)
Q Consensus       166 ~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~  240 (289)
                      ++|++.. |++++..+..|.++++.+...+    ..+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++ .
T Consensus       165 ~~Ll~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         165 KILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHhcc-CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            9999865 8999999999999888766543    356899999999996 9999999999999999999999999996 5


Q ss_pred             CCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          241 TGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       241 g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      |++++          .++.+|.||||+|+++|+.++...+
T Consensus       243 g~din----------~~d~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         243 HIEIN----------DTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             SCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCc----------CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999          9999999999999999998865544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.5e-24  Score=172.88  Aligned_cols=179  Identities=16%  Similarity=0.166  Sum_probs=155.9

Q ss_pred             ccHHHhcCCHHHHHHHHHcC-CcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccc--cCCCCChHHHHHHhcCC
Q 039376           85 QQIKQVKTSEDWFREMVETG-VKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAK--FTESCGTLFHSMANINE  158 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g-~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~--~~~~~~t~Lh~A~~~g~  158 (289)
                      .|.|+..++.++++.|++.+ ..+   |..|.||||+|+..|+.+++++|++ .+++++..  .+..|.+|+|+++..+.
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~   82 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGN   82 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-TCTTCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhh-hhccccccccccccccccccccccccc
Confidence            46688889999999998864 333   6789999999999999999999998 57777643  26679999999999999


Q ss_pred             chHHHHHHHHHhccCCC--CccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 039376          159 DEAHRLLDEFLDMISPL--DLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEY  236 (289)
Q Consensus       159 ~~~~~~v~~Ll~~~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~  236 (289)
                         .+++..++..  +.  +....+..+.|++++++..++.+++++|++.|... +..+..|+||||+|+..|+.+++++
T Consensus        83 ---~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~  156 (229)
T d1ixva_          83 ---LEVVKSLYDR--PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIEL  156 (229)
T ss_dssp             ---HHHHHHHHSS--SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             ---cccccccccc--cccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccc
Confidence               9999999887  54  45556778899999999999999999999999995 8899999999999999999999999


Q ss_pred             HHhcC-CCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          237 LLSVT-GVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       237 Ll~~g-~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      |+++| .+++          .++.+|+||||+|+..|..++..++
T Consensus       157 Ll~~~~~~in----------~~d~~g~TpLh~A~~~~~~~~v~~L  191 (229)
T d1ixva_         157 LCGLGKSAVN----------WQDKQGWTPLFHALAEGHGDAAVLL  191 (229)
T ss_dssp             HHTTTCCCSC----------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccc----------ccccccCCchhhhcccccHHHHHHH
Confidence            99987 5667          8899999999999999998865544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=184.38  Aligned_cols=208  Identities=16%  Similarity=0.139  Sum_probs=167.6

Q ss_pred             hhhhhhcCCchHHHHHHHhccCCCchh---------hhhcCChhhhhhcccCCCCccchhcccc---ccHHHhcCCHHHH
Q 039376           30 SSRLLDSKNEDEIVKMKQKDFAQPSSK---------LVVGKKEDEITEMKPANDPIIEVKSHER---QQIKQVKTSEDWF   97 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~   97 (289)
                      ....+...+..+++++|+..++++...         ........+....+.............+   ...++..+..+++
T Consensus       168 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  247 (408)
T d1n11a_         168 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV  247 (408)
T ss_dssp             HHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHh
Confidence            345566789999999999998765432         2222233333333333333332222222   3357788999999


Q ss_pred             HHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCC
Q 039376           98 REMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISP  174 (289)
Q Consensus        98 ~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g  174 (289)
                      +.+...+...   +..|.|||+.|++.++.+++++|++ .+++++.. +..+.||||.++..++   .++++++++.  |
T Consensus       248 ~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~-~~~~~t~L~~~~~~~~---~~~~~~ll~~--g  320 (408)
T d1n11a_         248 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDAT-TRMGYTPLHVASHYGN---IKLVKFLLQH--Q  320 (408)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCC-CSSCCCHHHHHHHSSC---SHHHHHHHHT--T
T ss_pred             hhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHH-CCCccccc-cccccccchhhcccCc---ceeeeeeccc--c
Confidence            9999988765   6689999999999999999999998 58888888 8889999999999999   9999999999  9


Q ss_pred             CCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH---HhcCCCcc
Q 039376          175 LDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL---LSVTGVEE  245 (289)
Q Consensus       175 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~L---l~~g~~~~  245 (289)
                      ++++.+|..|.||||+|++.|+.++|++|+++|+++ +.+|..|+||||+|+..|+.+++++|   ++++++..
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~-n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~  393 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL  393 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999999999999995 99999999999999999999988755   45555554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=8.1e-26  Score=165.38  Aligned_cols=107  Identities=20%  Similarity=0.275  Sum_probs=100.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHH
Q 039376          112 HPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSA  191 (289)
Q Consensus       112 ~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A  191 (289)
                      .|||++|++.|+.+++++|++ .|++++.+ +..|+||||+|+..|+   .+++++|++.  |++++.+|..|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~-~~~g~t~lh~A~~~~~---~~~~~~ll~~--g~din~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLK--GADINAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCCCCCC-SSSSCCTTHHHHHHST---TTHHHHHHHS--SCTTTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHH-hhhccccc-cccccccccccccccc---cccccccccc--cceeeecccccccchhhh
Confidence            489999999999999999998 58999998 9999999999999999   9999999999  999999999999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Q 039376          192 AIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA  226 (289)
Q Consensus       192 ~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~  226 (289)
                      +..|+.+++++|+++|+++ +.+|..|+||||+|.
T Consensus        76 ~~~~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGADK-TVKGPDGLTALEATD  109 (118)
T ss_dssp             HTTTCCHHHHHHHTTCCCS-SSSSSSTCCCCCTCS
T ss_pred             hhcCchhhhhhhhcccccc-eeeCCCCCCHHHHHh
Confidence            9999999999999999995 999999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=161.33  Aligned_cols=122  Identities=18%  Similarity=0.225  Sum_probs=111.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAA  192 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~  192 (289)
                      ++|+.|++.|+.++|++|++ .+++++.+ +..|+||||+|+..|+   .+++++|++.  |++++.+|..|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~-d~~g~t~Lh~A~~~~~---~~~~~~ll~~--g~~~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLP-NDEGITALHNAVCAGH---TEIVKFLVQF--GVNVNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS-TTSSCCCC-CTTSCCHHHHHHHHTC---HHHHHHHHHH--TCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCcccc-cccccccccccccccc---cccccccccc--ccccccccccCcccccccc
Confidence            68999999999999999998 68999999 9999999999999999   9999999999  9999999999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCCCCCCCC-CCCCHHHHH--HHcCCHHHHHHHHhcCC
Q 039376          193 IVGNTKAAKILVKYNKNLPNMRNR-IGQCPIHCA--ARSGHRETVEYLLSVTG  242 (289)
Q Consensus       193 ~~g~~~~v~~Ll~~g~~i~~~~~~-~g~t~L~~A--~~~~~~~~~~~Ll~~g~  242 (289)
                      ..|+.+++++|+++|+++ +..+. .|+||++++  +..|+.+++++|+..+.
T Consensus        76 ~~g~~~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            999999999999999996 76664 588987766  46789999999997543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.2e-25  Score=162.12  Aligned_cols=107  Identities=22%  Similarity=0.257  Sum_probs=103.4

Q ss_pred             ChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Q 039376          147 GTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA  226 (289)
Q Consensus       147 ~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~  226 (289)
                      .|||++|++.|+   .++|++|++.  |++++.++..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+
T Consensus         3 ~tpL~~A~~~g~---~~~v~~Ll~~--g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGD---LDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHTT--TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCC---HHHHHHHHHh--hhcccccccccccccccccccccccccccccccccee-eecccccccchhhhh
Confidence            589999999999   9999999999  9999999999999999999999999999999999996 999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHH
Q 039376          227 RSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILI  269 (289)
Q Consensus       227 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~  269 (289)
                      .+|+.+++++|+++|++++          .++.+|.||||+|.
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~----------~~d~~G~t~l~~a~  109 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKT----------VKGPDGLTALEATD  109 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSS----------SSSSSTCCCCCTCS
T ss_pred             hcCchhhhhhhhcccccce----------eeCCCCCCHHHHHh
Confidence            9999999999999999999          99999999998873

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-24  Score=185.17  Aligned_cols=145  Identities=18%  Similarity=0.138  Sum_probs=116.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCc----hHHHHHHHHHhccCCCCccccCCC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINED----EAHRLLDEFLDMISPLDLEETDTS  183 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~----~~~~~v~~Ll~~~~g~~~~~~~~~  183 (289)
                      |..|.||||+||+.|+.++|++|++ .|++++.+ +..|+||||.||..++.    ...++++++.     ..+..+|..
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~-~gad~~~~-d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~-----~~~~~~d~~  176 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLY-----PCLILEDSM  176 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG-----GGGGEECTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcC-CcccccHHHHhhhcccchhhhhHHHHHHHHh-----hhhhhcccc
Confidence            5689999999999999999999998 68999999 99999999999987641    0013444443     336677889


Q ss_pred             CCCHHHHHHHhCC----HHH--------HHHHHHcCCCC------------------------------------CCCCC
Q 039376          184 GGTPLTSAAIVGN----TKA--------AKILVKYNKNL------------------------------------PNMRN  215 (289)
Q Consensus       184 g~t~L~~A~~~g~----~~~--------v~~Ll~~g~~i------------------------------------~~~~~  215 (289)
                      |+||||+++..+.    ..+        +.+++..+...                                    ++.+|
T Consensus       177 g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D  256 (301)
T d1sw6a_         177 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD  256 (301)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCC
T ss_pred             cCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCC
Confidence            9999999886543    222        23333332220                                    37889


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHH
Q 039376          216 RIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILI  269 (289)
Q Consensus       216 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~  269 (289)
                      ..|+||||+|++.|+.+++++|+++|++++          +.+..|+|||++|+
T Consensus       257 ~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~----------~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         257 SNGDTCLNIAARLGNISIVDALLDYGADPF----------IANKSGLRPVDFGA  300 (301)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTCCTT----------CCCTTSCCGGGGTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHcC
Confidence            999999999999999999999999999999          99999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=4.8e-24  Score=177.83  Aligned_cols=191  Identities=12%  Similarity=0.139  Sum_probs=153.0

Q ss_pred             CchhhhhhcCCchHHHHHHHhccCCCchhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcC
Q 039376           28 QPSSRLLDSKNEDEIVKMKQKDFAQPSSKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETG  104 (289)
Q Consensus        28 ~~~~~~~~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g  104 (289)
                      .....++...|+.++|++|+....                ..++..|++++.++..+.+   .|+..++.+++++|+++|
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~----------------~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G   97 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEA----------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG   97 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHH----------------HHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcch----------------hHHHHcCCCccccCCCCCeeeccccccccccccccccccc
Confidence            345666677777777777764432                1133456666666666555   477889999999999999


Q ss_pred             CcC---CCCCchHHHHHHHcCCHHHHHHHHhhCC-------C--------------------------------------
Q 039376          105 VKV---DLGEHPQLRRALVRKDWKEVERFISENP-------D--------------------------------------  136 (289)
Q Consensus       105 ~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~-------~--------------------------------------  136 (289)
                      +++   |..|.|||++|+..++.++++.+.....       .                                      
T Consensus        98 ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (277)
T d2fo1e1          98 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA  177 (277)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred             cccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccc
Confidence            987   5579999999999999998887743210       0                                      


Q ss_pred             -CcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Q 039376          137 -TLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRN  215 (289)
Q Consensus       137 -~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~  215 (289)
                       ..... +..|.||||+++..++   .+++.+++... +.+.+.+|..|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus       178 ~~~~~~-~~~g~t~L~~~~~~~~---~~~~~~~l~~~-~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-n~~d  251 (277)
T d2fo1e1         178 ARKDSE-KYKGRTALHYAAQVSN---MPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVD  251 (277)
T ss_dssp             GGTSSS-SCCCCCTHHHHHSSCC---HHHHHHHHHHS-CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCC
T ss_pred             cccccc-ccCCCCcccccccccc---ccccccccccc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCcC
Confidence             00112 4578999999999999   99998877654 7889999999999999999999999999999999996 9999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhc
Q 039376          216 RIGQCPIHCAARSGHRETVEYLLSV  240 (289)
Q Consensus       216 ~~g~t~L~~A~~~~~~~~~~~Ll~~  240 (289)
                      .+|+||||+|++.|+.+++++|+++
T Consensus       252 ~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         252 ATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999864

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.1e-22  Score=162.86  Aligned_cols=190  Identities=16%  Similarity=0.119  Sum_probs=139.8

Q ss_pred             hHHHHHHHhccCCCc----------hhhhhcCChhhhhhcccCCCCccchhccccccH---HHhcCCHHHHHHHHHcCCc
Q 039376           40 DEIVKMKQKDFAQPS----------SKLVVGKKEDEITEMKPANDPIIEVKSHERQQI---KQVKTSEDWFREMVETGVK  106 (289)
Q Consensus        40 ~~iv~~L~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Ll~~g~~  106 (289)
                      .|+|++|+++|.+..          ..++...+..+++++|+..++.++.....+...   +..................
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            478888888775432          233444455555555555555444444333332   2233333333333332221


Q ss_pred             ----CCCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCC
Q 039376          107 ----VDLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDT  182 (289)
Q Consensus       107 ----~~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~  182 (289)
                          ....|.++.+.+.........+.|+. .+.+++.+ +..|.|||++++..+.   .+++..++..  +.+++..|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~-~~~~~t~l~~~~~~~~---~~~~~~l~~~--~~~~~~~d~  154 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLIT-ADADINAA-DNSGKTALHWAAAVNN---TEAVNILLMH--HANRDAQDD  154 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHH-TTCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCT
T ss_pred             ccccccccccccccccccccchhhhhhhhh-hccccccc-CCCCCCcchhhcccCc---ceeeeeeccc--ccccccccc
Confidence                13345666666666666677776666 57788888 8999999999999999   9999999999  899999999


Q ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 039376          183 SGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYL  237 (289)
Q Consensus       183 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~L  237 (289)
                      .|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++|++|
T Consensus       155 ~g~TpL~~A~~~g~~~~v~~Ll~~gad~-n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhccccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999995 99999999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.90  E-value=1.3e-23  Score=176.71  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=139.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHH
Q 039376          110 GEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLT  189 (289)
Q Consensus       110 ~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~  189 (289)
                      .+.|+|++||+.|+.++|++||+ .|++++.+ +..|.||||+|+..|+   .+++++|+++  +.+....+..+.+||+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~-~Gadvn~~-d~~G~T~L~~A~~~g~---~eiv~~Ll~~--~~~~~~~~~~~~~~L~  111 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLE-RGADINYA-NVDGLTALHQACIDDN---VDMVKFLVEN--GANINQPDNEGWIPLH  111 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHH-CCCCCCcc-CCCCCcHHHHHHhcCC---ceeeeeeccc--cccccccccccccccc
Confidence            46699999999999999999999 58999999 9999999999999999   9999999999  8999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCCC----------------------------------------------------------
Q 039376          190 SAAIVGNTKAAKILVKYNKNLP----------------------------------------------------------  211 (289)
Q Consensus       190 ~A~~~g~~~~v~~Ll~~g~~i~----------------------------------------------------------  211 (289)
                      +++..++.+++++|+++|+...                                                          
T Consensus       112 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (291)
T d1s70b_         112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (291)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence            9999999999999998876530                                                          


Q ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          212 -NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       212 -~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                       ...+..|.||||.|+..|+.+++++|+++|++++          .++.+|+||||+|+..|+.++...+
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din----------~~~~~g~TpL~~A~~~g~~~iv~lL  251 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN----------IKDYDGWTPLHAAAHWGKEEACRIL  251 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccCCCCChhhHHHHcCChhhhcccccceeccc----------ccccCCCCHHHHHHHcCCHHHHHHH
Confidence             2244677899999999999999999999999999          9999999999999999998854443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.5e-23  Score=167.58  Aligned_cols=169  Identities=14%  Similarity=0.132  Sum_probs=141.8

Q ss_pred             cccCCCCccchhcccccc---HHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCHHHHHHHHhhCCC-----C
Q 039376           69 MKPANDPIIEVKSHERQQ---IKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDWKEVERFISENPD-----T  137 (289)
Q Consensus        69 ~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~-----~  137 (289)
                      .+...+..++.++..+.+   .|+..++.+++++|+++|+++   |..|.||||+|+..|+.++++.++.....     .
T Consensus        24 ~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (221)
T d1iknd_          24 QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI  103 (221)
T ss_dssp             -----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred             HHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccc
Confidence            344556667767666555   477899999999999999987   67899999999999999999999874211     1


Q ss_pred             cccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC-CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC
Q 039376          138 LYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD-TSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNR  216 (289)
Q Consensus       138 ~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~  216 (289)
                      .... ...|.||||.|+..++   .+++.+|+..  +..++..+ ..|.||||+|++.|+.+++++|+++|+++ +.+|.
T Consensus       104 ~~~~-~~~~~t~l~~a~~~~~---~~~~~~l~~~--~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~~~  176 (221)
T d1iknd_         104 LKAT-NYNGHTCLHLASIHGY---LGIVELLVSL--GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTY  176 (221)
T ss_dssp             GGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCT
T ss_pred             cccc-ccccchhhhHHhhcCC---hhheeeeccc--CcccccccccCCCCccccccccccHHHHHHHHhcCCcc-cccCC
Confidence            1222 5568999999999999   9999999998  88887765 57999999999999999999999999995 99999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCc
Q 039376          217 IGQCPIHCAARSGHRETVEYLLSVTGVE  244 (289)
Q Consensus       217 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  244 (289)
                      .|+||||+|+..++.+++++|++.+.+.
T Consensus       177 ~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         177 QGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             TCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            9999999999999999999999998763

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.6e-24  Score=156.34  Aligned_cols=118  Identities=15%  Similarity=0.191  Sum_probs=109.3

Q ss_pred             CChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC-CHHHH
Q 039376          146 CGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQ-CPIHC  224 (289)
Q Consensus       146 ~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~-t~L~~  224 (289)
                      +.++||+|+..|+   .++|++|++.  |++++.++..|.||+|+|+ .|+.+++++|+++|+++ +.++..+. ||||+
T Consensus         3 ~~~~L~~Aa~~G~---~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           3 SADWLATAAARGR---VEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   75 (125)
T ss_dssp             STTHHHHHHHHTC---HHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             ChhHHHHHHHCCC---HHHHHHHHHc--CCccccccccccccccccc-ccccccccccccccccc-cccccccccccccc
Confidence            5689999999999   9999999999  9999999999999999775 79999999999999995 88888876 69999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHHHHhCCCCccccc
Q 039376          225 AARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEILIEFNFLGQYTCN  280 (289)
Q Consensus       225 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~g~~~~~~~~  280 (289)
                      |+..|+.+++++|+++|++++          ..+..|+|||++|+.+|+.++...+
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~----------~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLD----------VRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSS----------CCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccc----------cccCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999          9999999999999999998865443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.2e-22  Score=153.60  Aligned_cols=129  Identities=19%  Similarity=0.218  Sum_probs=111.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhhCCCCcccc-----cCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCH
Q 039376          113 PQLRRALVRKDWKEVERFISENPDTLYAK-----FTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTP  187 (289)
Q Consensus       113 t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~-----~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~  187 (289)
                      ..|+.|++.+++..+..++. .+.++..+     .+..|+||||+|+..+.....+++++|++.  |++++.+|..|+||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~Tp   84 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYA-DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHH-cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhccc
Confidence            35667889999999998887 46655433     156789999999985321128999999999  99999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          188 LTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       188 L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      ||+|+..|+.+++++|+++|+++ +.+|..|+||||+|++.|+.+++++|++.++...
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            99999999999999999999996 9999999999999999999999999999887654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.6e-23  Score=152.67  Aligned_cols=115  Identities=20%  Similarity=0.221  Sum_probs=103.7

Q ss_pred             hHHHHHHhcCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Q 039376          148 TLFHSMANINEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAAR  227 (289)
Q Consensus       148 t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~  227 (289)
                      ++|+.|+..|+   .++|++|++.  |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus         3 ~lL~~A~~~G~---~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGE---FDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTC---HHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCC---HHHHHHHHHc--CCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccch
Confidence            67999999999   9999999999  9999999999999999999999999999999999996 9999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCccccc-ccchHHHHH--HHhCCCCccc
Q 039376          228 SGHRETVEYLLSVTGVEEEDSHEKYSNPFAGE-CGLKLLEIL--IEFNFLGQYT  278 (289)
Q Consensus       228 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~-~g~~~l~~a--~~~g~~~~~~  278 (289)
                      +|+.+++++|+++|++++          ..+. ++.+++.++  ...|+.++..
T Consensus        77 ~g~~~~v~~Ll~~ga~v~----------~~~~~~~~~~~~~~~a~~~g~~eiv~  120 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVF----------AMTYSDMQTAADKCEEMEEGYTQCSQ  120 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTT----------CCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             hhHHHHHHHHHHcCCCcc----------cccCCCCCCHHHHHHHHHcChHHHHH
Confidence            999999999999999998          6553 577777665  4667766443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=2.6e-24  Score=186.16  Aligned_cols=187  Identities=11%  Similarity=0.045  Sum_probs=136.5

Q ss_pred             HHHhcCCHHHHHH---HHHcCCcCC---CCCchHHHHHHHcCCHHHHHHHHhhCCCCccccc-CCCCChHHHHHHhcCCc
Q 039376           87 IKQVKTSEDWFRE---MVETGVKVD---LGEHPQLRRALVRKDWKEVERFISENPDTLYAKF-TESCGTLFHSMANINED  159 (289)
Q Consensus        87 ~~~~~~~~~~~~~---Ll~~g~~~~---~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~-~~~~~t~Lh~A~~~g~~  159 (289)
                      +|+..|+.+++++   |++.|+++|   ..|+||||+||+.|+.++|++|++ .+++++... +..|.||||+|+..|+ 
T Consensus        96 ~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L~~Aa~~g~-  173 (346)
T d2ajaa1          96 VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGH-  173 (346)
T ss_dssp             HHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHHSHHHHHHHHHHHHTTC-
T ss_pred             HHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccccCCCChhHHHHHHhh-
Confidence            5778888776554   788898774   478899999999999999999998 578877651 2458999999999999 


Q ss_pred             hHHHHHHHHHhccCCCCc---cccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-------------------------
Q 039376          160 EAHRLLDEFLDMISPLDL---EETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLP-------------------------  211 (289)
Q Consensus       160 ~~~~~v~~Ll~~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-------------------------  211 (289)
                        .++|++|++.  |++.   +..+..+.||++.|+..|+.+++++|++.|+++.                         
T Consensus       174 --~~iv~~Ll~~--~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (346)
T d2ajaa1         174 --LHVLNRLCEL--APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL  249 (346)
T ss_dssp             --HHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHc--CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccc
Confidence              9999999998  6654   3344556778888889999999999987764310                         


Q ss_pred             -------CCCCCC----------------CCCHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCcccccccchHHHHH
Q 039376          212 -------NMRNRI----------------GQCPIHCAARSGHRETVEYLLSVTGVEEEDSHEKYSNPFAGECGLKLLEIL  268 (289)
Q Consensus       212 -------~~~~~~----------------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~~~l~~a  268 (289)
                             ......                +.++++.|+..++.+++++|++.+.....     ......+.+|.||||+|
T Consensus       250 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~-----~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         250 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL-----APTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGG-----SSCCSSTTCCCHHHHHH
T ss_pred             hHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhh-----cccccCCCCCCcHHHHH
Confidence                   000111                12467777778889999999988876440     00113445789999999


Q ss_pred             HHhCCCCccccccccc
Q 039376          269 IEFNFLGQYTCNTLSS  284 (289)
Q Consensus       269 ~~~g~~~~~~~~~~~~  284 (289)
                      ++.|+.++...+..-+
T Consensus       325 ~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         325 LRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHTCTTHHHHHTTSH
T ss_pred             HHcCcHHHHHHHhCCC
Confidence            9999999655554333

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=2.2e-23  Score=180.25  Aligned_cols=132  Identities=10%  Similarity=0.042  Sum_probs=112.0

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHH--HhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHHHHHhccCCCCccccC--CC
Q 039376          108 DLGEHPQLRRALVRKDWKEVERF--ISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLDEFLDMISPLDLEETD--TS  183 (289)
Q Consensus       108 ~~~g~t~Lh~A~~~g~~~~v~~l--l~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~~Ll~~~~g~~~~~~~--~~  183 (289)
                      +..|.||||+||+.|+.++++++  |...+++++.+ +..|+||||+||+.|+   .++|++|++.  |++++..+  ..
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~-~~~g~taL~~Aa~~G~---~~~v~~Ll~~--g~~~~~~~~~~~  160 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGH---LHVLNRLCEL--APTEIMAMIQAE  160 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTC---HHHHHHHHHS--CTTTHHHHHSHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc-CCCCCCHHHHHHHCCC---HHHHHHHHHc--CCCccccccccC
Confidence            55789999999999999888763  33378999999 9999999999999999   9999999999  89988765  46


Q ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 039376          184 GGTPLTSAAIVGNTKAAKILVKYNKNLP--NMRNRIGQCPIHCAARSGHRETVEYLLSVTGVEE  245 (289)
Q Consensus       184 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  245 (289)
                      |+||||+|+..|+.+++++|++.|+...  +..+..+.||++.|+.+|+.+++++|+++|++++
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            8999999999999999999999987621  2233556788888999999999999999999876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.3e-20  Score=140.65  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=102.2

Q ss_pred             HHhcCCHHHHHHHHHcCCcC---------CCCCchHHHHHHHc---CCHHHHHHHHhhCCCCcccccCCCCChHHHHHHh
Q 039376           88 KQVKTSEDWFREMVETGVKV---------DLGEHPQLRRALVR---KDWKEVERFISENPDTLYAKFTESCGTLFHSMAN  155 (289)
Q Consensus        88 ~~~~~~~~~~~~Ll~~g~~~---------~~~g~t~Lh~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~  155 (289)
                      ++..+.+..+..++..|+++         +..|.||||+|++.   |..+++++|++ .|++++.+ +..|.||||+|+.
T Consensus        13 Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~-~gadin~~-d~~g~TpLh~A~~   90 (154)
T d1dcqa1          13 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQ-TGKGSTALHYCCL   90 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH-HCSCTTCC-CTTCCCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH-cCCChhhh-hhhhccccccccc
Confidence            44566677777788888764         34789999999974   67899999998 48999999 9999999999999


Q ss_pred             cCCchHHHHHHHHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Q 039376          156 INEDEAHRLLDEFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKN  209 (289)
Q Consensus       156 ~g~~~~~~~v~~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  209 (289)
                      .|+   .+++++|++.  |++++.+|..|.||||+|++.|+.+++++|++.+..
T Consensus        91 ~~~---~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          91 TDN---AECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             TTC---HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccc---cccccccccc--CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999   9999999999  999999999999999999999999999999997665

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=144.70  Aligned_cols=199  Identities=12%  Similarity=0.074  Sum_probs=138.8

Q ss_pred             hhhhhhcCCchHHHHHHHh----ccCCCc---------hhhhhcCChhhhhhcccCCCCccchhcccccc---HHHhcCC
Q 039376           30 SSRLLDSKNEDEIVKMKQK----DFAQPS---------SKLVVGKKEDEITEMKPANDPIIEVKSHERQQ---IKQVKTS   93 (289)
Q Consensus        30 ~~~~~~~~~~~~iv~~L~~----~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~   93 (289)
                      ...++...|+.++|++|++    .+.+..         ...+...+..+++++++..++..+.....+..   .+....+
T Consensus         6 pLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~   85 (228)
T d1k1aa_           6 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRS   85 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccccccc
Confidence            4556778899999998875    332221         23344444555555555555444443333322   2344455


Q ss_pred             HHHHHHHHHcCCcC-------CCCCchHHHHHHHcCCHHHHHHHHhhCCCCcccccCCCCChHHHHHHhcCCchHHHHHH
Q 039376           94 EDWFREMVETGVKV-------DLGEHPQLRRALVRKDWKEVERFISENPDTLYAKFTESCGTLFHSMANINEDEAHRLLD  166 (289)
Q Consensus        94 ~~~~~~Ll~~g~~~-------~~~g~t~Lh~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~~~~v~  166 (289)
                      .++++.+.......       .....++|+.+...........+... ..+........+.++|+.|+..+.   ..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~  161 (228)
T d1k1aa_          86 PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS---LSMVQ  161 (228)
T ss_dssp             HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC---HHHHH
T ss_pred             ccchhhhhhccccccccccccccccccccccccccccchhhhhhhcc-ccccccccccchhhHHHHHHHhhh---hhhhh
Confidence            55555444432211       22344566666666666666555553 333333336688999999999999   99999


Q ss_pred             HHHhccCCCCccccCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 039376          167 EFLDMISPLDLEETDTSGGTPLTSAAIVGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAARSGHRETVE  235 (289)
Q Consensus       167 ~Ll~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~~~~~~~~~~  235 (289)
                      +++..  +..++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+++|+.+++|
T Consensus       162 ~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~-n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         162 LLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhh--ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCccccC
Confidence            99999  8999999999999999999999999999999999995 999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.3e-20  Score=157.96  Aligned_cols=139  Identities=18%  Similarity=0.185  Sum_probs=104.7

Q ss_pred             ccHHHhcCCHHHHHHHHHcCCcC---CCCCchHHHHHHHcCCH---HHHHHHHhhCCCCcccccCCCCChHHHHHHhcCC
Q 039376           85 QQIKQVKTSEDWFREMVETGVKV---DLGEHPQLRRALVRKDW---KEVERFISENPDTLYAKFTESCGTLFHSMANINE  158 (289)
Q Consensus        85 ~~~~~~~~~~~~~~~Ll~~g~~~---~~~g~t~Lh~A~~~g~~---~~v~~ll~~~~~~~~~~~~~~~~t~Lh~A~~~g~  158 (289)
                      .+.|+..++.++++.|+++|+++   |..|+||||.|+..++.   ..+..+++.....+..+ +..|+||||+++..+.
T Consensus       111 LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~-d~~g~t~lh~~~~~~~  189 (301)
T d1sw6a_         111 LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE-DSMNRTILHHIIITSG  189 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE-CTTCCCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc-ccccCCHHHHHHHHhC
Confidence            45688999999999999999987   66899999999987752   12223333223345566 8899999999886543


Q ss_pred             ch-HHH--------HHHHHHhccCCC------------------------------------CccccCCCCCCHHHHHHH
Q 039376          159 DE-AHR--------LLDEFLDMISPL------------------------------------DLEETDTSGGTPLTSAAI  193 (289)
Q Consensus       159 ~~-~~~--------~v~~Ll~~~~g~------------------------------------~~~~~~~~g~t~L~~A~~  193 (289)
                      .. ...        ++.+++... ..                                    .++.+|..|+||||+|++
T Consensus       190 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~  268 (301)
T d1sw6a_         190 MTGCSAAAKYYLDILMGWIVKKQ-NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR  268 (301)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHGG-GCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHhcC-CcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHH
Confidence            10 022        233343321 11                                    167889999999999999


Q ss_pred             hCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Q 039376          194 VGNTKAAKILVKYNKNLPNMRNRIGQCPIHCAA  226 (289)
Q Consensus       194 ~g~~~~v~~Ll~~g~~i~~~~~~~g~t~L~~A~  226 (289)
                      .|+.++|++|+++|+++ +.+|..|+|||++|+
T Consensus       269 ~g~~~iv~~Ll~~GAd~-~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         269 LGNISIVDALLDYGADP-FIANKSGLRPVDFGA  300 (301)
T ss_dssp             HCCHHHHHHHHHTTCCT-TCCCTTSCCGGGGTC
T ss_pred             cCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHcC
Confidence            99999999999999995 999999999999885