Citrus Sinensis ID: 039388

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG
cHHHHHHHHccEEEcccccEEEcccccccccEEEEEEccccccccHHHHHHHHHHHHHccccccccEEEEccccccccccccHHHHHHccccccccccccccHHHccccHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccEEEEEEEEEcccEEEEEEEEEcccccccccccccccc
ccHHHHHHcccEEEccccEEEEccccHcHccEEEEEEcccHHHHHHHHHHHHHHHHHHcHHHcccEEEEEEEccHHHHHHHHHHHHHHHcccccccEEEccHHHHHHHccHHHHHHccccccEEEccccHHHHHHHHHHHccccHHHHHHccccccHHHcccccccEEEcccEcEEEEccccEEEEEEEEEEEEEEEEcccccccccc
selvllyengpvhtandlslvwndcssdkasnlMFVDQLTENGVSNNLYDFLQAFFVehpcydkndfyitgesyaghyipafasphystrkkyegeycYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGrkdfevaltapfkvdgakagqmkSYRLLTLLRIYFCLFIenevhnsghmvptg
SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTApfkvdgakagqmKSYRLLTLLRIYFCLFIEnevhnsghmvptg
SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG
**LVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEV**********
SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG
SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG
SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEGEYCYDLSIMEKFLNEKSVKDALGAMDIRFDLCNKNVSIALVFYLLSAENSKWVHAVEWSGRKDFEVALTAPFKVDGAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query208 2.2.26 [Sep-21-2011]
P52712 429 Serine carboxypeptidase-l no no 0.456 0.221 0.594 9e-29
P21529 508 Serine carboxypeptidase 3 N/A no 0.466 0.190 0.557 5e-27
Q9FFB0 505 Serine carboxypeptidase-l yes no 0.456 0.188 0.549 3e-26
Q56WF8 510 Serine carboxypeptidase-l no no 0.466 0.190 0.557 3e-26
P11515 500 Serine carboxypeptidase 3 N/A no 0.466 0.194 0.548 3e-26
P32826 516 Serine carboxypeptidase-l no no 0.456 0.184 0.540 1e-25
P37891 500 Serine carboxypeptidase 3 no no 0.456 0.19 0.522 3e-24
Q41005286 Serine carboxypeptidase-l N/A no 0.533 0.388 0.393 3e-21
Q9FFB2190 Putative serine carboxype no no 0.322 0.352 0.542 1e-15
Q54DY7 416 Serine carboxypeptidase S yes no 0.399 0.199 0.373 2e-10
>sp|P52712|CBPX_ORYSJ Serine carboxypeptidase-like OS=Oryza sativa subsp. japonica GN=CBP31 PE=2 SV=2 Back     alignment and function desciption
 Score =  126 bits (317), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 74/111 (66%), Gaps = 16/111 (14%)

Query: 1   SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLT----------------ENGV 44
           SEL L YENGP H A+++SLVWND   D+ SNL++VDQ T                E GV
Sbjct: 60  SELALFYENGPFHIADNMSLVWNDFGWDQESNLIYVDQPTGTGFSYSSNPRDTRHDEAGV 119

Query: 45  SNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEG 95
           SN+LY FLQAFF EHP + KNDFYITGESYAGHYIPAFAS  Y   K  EG
Sbjct: 120 SNDLYAFLQAFFTEHPNFAKNDFYITGESYAGHYIPAFASRVYKGNKNSEG 170

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 4EC: .EC: 1EC: 6EC: .EC: -
>sp|P21529|CBP3_HORVU Serine carboxypeptidase 3 OS=Hordeum vulgare GN=CBP3 PE=1 SV=2 Back     alignment and function description
>sp|Q9FFB0|SCP47_ARATH Serine carboxypeptidase-like 47 OS=Arabidopsis thaliana GN=SCPL47 PE=2 SV=1 Back     alignment and function description
>sp|Q56WF8|SCP48_ARATH Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2 Back     alignment and function description
>sp|P11515|CBP3_WHEAT Serine carboxypeptidase 3 OS=Triticum aestivum GN=CBP3 PE=2 SV=1 Back     alignment and function description
>sp|P32826|SCP49_ARATH Serine carboxypeptidase-like 49 OS=Arabidopsis thaliana GN=SCPL49 PE=2 SV=2 Back     alignment and function description
>sp|P37891|CBP3_ORYSJ Serine carboxypeptidase 3 OS=Oryza sativa subsp. japonica GN=CBP3 PE=2 SV=1 Back     alignment and function description
>sp|Q41005|CBPX_PEA Serine carboxypeptidase-like (Fragment) OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q9FFB2|SCP54_ARATH Putative serine carboxypeptidase-like 54 OS=Arabidopsis thaliana GN=SCPL54 PE=5 SV=1 Back     alignment and function description
>sp|Q54DY7|SCPL1_DICDI Serine carboxypeptidase S10 family member 1 OS=Dictyostelium discoideum GN=DDB_G0291912 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
255565433 506 Serine carboxypeptidase, putative [Ricin 0.456 0.187 0.621 2e-28
224118414 501 predicted protein [Populus trichocarpa] 0.456 0.189 0.612 2e-27
356534720 498 PREDICTED: serine carboxypeptidase-like 0.456 0.190 0.594 3e-27
356534722 501 PREDICTED: serine carboxypeptidase-like 0.456 0.189 0.594 3e-27
255637007249 unknown [Glycine max] 0.456 0.381 0.594 4e-27
125558319 524 hypothetical protein OsI_25989 [Oryza sa 0.456 0.181 0.594 4e-27
115472071 524 Os07g0479300 [Oryza sativa Japonica Grou 0.456 0.181 0.594 4e-27
242050222 521 hypothetical protein SORBIDRAFT_02g03317 0.456 0.182 0.594 5e-27
82654920 429 RecName: Full=Serine carboxypeptidase-li 0.456 0.221 0.594 5e-27
409582 429 serine carboxypeptidase-like protein [Or 0.456 0.221 0.594 5e-27
>gi|255565433|ref|XP_002523707.1| Serine carboxypeptidase, putative [Ricinus communis] gi|223537011|gb|EEF38647.1| Serine carboxypeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 76/111 (68%), Gaps = 16/111 (14%)

Query: 1   SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLT----------------ENGV 44
           SEL L YENGP H +N++SL WND   DKASNL+FVDQ T                ENGV
Sbjct: 140 SELALFYENGPYHLSNNMSLAWNDYGWDKASNLIFVDQPTGTGFSYTTDQSDLRHDENGV 199

Query: 45  SNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEG 95
           SN+LYDFLQAFF +HP   KNDFYITGESYAGHYIPAFAS  +S  K  EG
Sbjct: 200 SNDLYDFLQAFFKQHPQLVKNDFYITGESYAGHYIPAFASRVHSGNKNKEG 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224118414|ref|XP_002331476.1| predicted protein [Populus trichocarpa] gi|222873554|gb|EEF10685.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356534720|ref|XP_003535900.1| PREDICTED: serine carboxypeptidase-like 49-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356534722|ref|XP_003535901.1| PREDICTED: serine carboxypeptidase-like 49-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255637007|gb|ACU18836.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|125558319|gb|EAZ03855.1| hypothetical protein OsI_25989 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115472071|ref|NP_001059634.1| Os07g0479300 [Oryza sativa Japonica Group] gi|113611170|dbj|BAF21548.1| Os07g0479300 [Oryza sativa Japonica Group] gi|125600220|gb|EAZ39796.1| hypothetical protein OsJ_24236 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242050222|ref|XP_002462855.1| hypothetical protein SORBIDRAFT_02g033170 [Sorghum bicolor] gi|241926232|gb|EER99376.1| hypothetical protein SORBIDRAFT_02g033170 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|82654920|sp|P52712.2|CBPX_ORYSJ RecName: Full=Serine carboxypeptidase-like; Flags: Precursor gi|27260997|dbj|BAC45113.1| carboxypeptidase C cbp31 [Oryza sativa Japonica Group] gi|50509558|dbj|BAD31260.1| carboxypeptidase C cbp31 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|409582|dbj|BAA04511.1| serine carboxypeptidase-like protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
UNIPROTKB|P52712 429 CBP31 "Serine carboxypeptidase 0.456 0.221 0.594 9.3e-51
TAIR|locus:2075929 510 scpl48 "serine carboxypeptidas 0.466 0.190 0.557 9.5e-51
TAIR|locus:2172711 505 scpl47 "serine carboxypeptidas 0.456 0.188 0.549 4.4e-46
TAIR|locus:2075845 516 SCPL49 "SERINE CARBOXYPEPTIDAS 0.456 0.184 0.540 1.8e-35
CGD|CAL0003799 542 CPY1 [Candida albicans (taxid: 0.384 0.147 0.419 1.6e-21
UNIPROTKB|Q59PQ0 542 CPY1 "Potential serine carboxy 0.384 0.147 0.419 1.6e-21
UNIPROTKB|A4RPY8 552 CPYA "Carboxypeptidase Y homol 0.423 0.159 0.386 3.7e-18
UNIPROTKB|Q2TYA1 542 cpyA "Carboxypeptidase Y homol 0.384 0.147 0.376 3.9e-18
SGD|S000004912 532 PRC1 "Vacuolar carboxypeptidas 0.384 0.150 0.406 3.8e-16
ASPGD|ASPL0000030746 552 cpyA [Emericella nidulans (tax 0.423 0.159 0.336 9.8e-16
UNIPROTKB|P52712 CBP31 "Serine carboxypeptidase-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 305 (112.4 bits), Expect = 9.3e-51, Sum P(3) = 9.3e-51
 Identities = 66/111 (59%), Positives = 74/111 (66%)

Query:     1 SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLT----------------ENGV 44
             SEL L YENGP H A+++SLVWND   D+ SNL++VDQ T                E GV
Sbjct:    60 SELALFYENGPFHIADNMSLVWNDFGWDQESNLIYVDQPTGTGFSYSSNPRDTRHDEAGV 119

Query:    45 SNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFASPHYSTRKKYEG 95
             SN+LY FLQAFF EHP + KNDFYITGESYAGHYIPAFAS  Y   K  EG
Sbjct:   120 SNDLYAFLQAFFTEHPNFAKNDFYITGESYAGHYIPAFASRVYKGNKNSEG 170
GO:0005777 "peroxisome" evidence=ISS
GO:0005789 "endoplasmic reticulum membrane" evidence=ISS
TAIR|locus:2075929 scpl48 "serine carboxypeptidase-like 48" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172711 scpl47 "serine carboxypeptidase-like 47" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075845 SCPL49 "SERINE CARBOXYPEPTIDASE-LIKE 49" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003799 CPY1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59PQ0 CPY1 "Potential serine carboxypeptidase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|A4RPY8 CPYA "Carboxypeptidase Y homolog A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TYA1 cpyA "Carboxypeptidase Y homolog A" [Aspergillus oryzae RIB40 (taxid:510516)] Back     alignment and assigned GO terms
SGD|S000004912 PRC1 "Vacuolar carboxypeptidase Y (proteinase C" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030746 cpyA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.16LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.163.36.1
hypothetical protein (460 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
pfam00450 415 pfam00450, Peptidase_S10, Serine carboxypeptidase 5e-25
PTZ00472 462 PTZ00472, PTZ00472, serine carboxypeptidase (CBP1) 8e-16
pfam00450415 pfam00450, Peptidase_S10, Serine carboxypeptidase 4e-13
PTZ00472462 PTZ00472, PTZ00472, serine carboxypeptidase (CBP1) 6e-13
COG2939 498 COG2939, COG2939, Carboxypeptidase C (cathepsin A) 1e-09
PLN02209 437 PLN02209, PLN02209, serine carboxypeptidase 9e-09
PLN03016 433 PLN03016, PLN03016, sinapoylglucose-malate O-sinap 5e-06
COG2939498 COG2939, COG2939, Carboxypeptidase C (cathepsin A) 6e-04
PLN02213 319 PLN02213, PLN02213, sinapoylglucose-malate O-sinap 7e-04
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase Back     alignment and domain information 
 Score =  100 bits (251), Expect = 5e-25
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 16/96 (16%)

Query: 5   LLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQ----------------LTENGVSNNL 48
           L  E GP    +  +L  N  S +K +N++F+DQ                  +   + + 
Sbjct: 58  LFEELGPFRVNSGPTLYLNPYSWNKVANVLFLDQPVGVGFSYSNTTSDYKTDDEETAKDN 117

Query: 49  YDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFAS 84
           Y+FLQ FF + P Y  N FYI GESYAGHY+PA A 
Sbjct: 118 YEFLQKFFEKFPEYKNNPFYIAGESYAGHYVPALAQ 153

Length = 415
>gnl|CDD|240429 PTZ00472, PTZ00472, serine carboxypeptidase (CBP1); Provisional Back     alignment and domain information
>gnl|CDD|215926 pfam00450, Peptidase_S10, Serine carboxypeptidase Back     alignment and domain information
>gnl|CDD|240429 PTZ00472, PTZ00472, serine carboxypeptidase (CBP1); Provisional Back     alignment and domain information
>gnl|CDD|225490 COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|177859 PLN02209, PLN02209, serine carboxypeptidase Back     alignment and domain information
>gnl|CDD|178590 PLN03016, PLN03016, sinapoylglucose-malate O-sinapoyltransferase Back     alignment and domain information
>gnl|CDD|225490 COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|165857 PLN02213, PLN02213, sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 208
KOG1282454 consensus Serine carboxypeptidases (lysosomal cath 100.0
PF00450415 Peptidase_S10: Serine carboxypeptidase; InterPro: 100.0
PTZ00472462 serine carboxypeptidase (CBP1); Provisional 100.0
PLN02209437 serine carboxypeptidase 100.0
PLN03016433 sinapoylglucose-malate O-sinapoyltransferase 100.0
PLN02213319 sinapoylglucose-malate O-sinapoyltransferase/ carb 100.0
COG2939498 Carboxypeptidase C (cathepsin A) [Amino acid trans 100.0
KOG1283414 consensus Serine carboxypeptidases [Posttranslatio 100.0
PF12697228 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 88.34
PRK05077414 frsA fermentation/respiration switch protein; Revi 85.37
TIGR03611257 RutD pyrimidine utilization protein D. This protei 85.29
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-60  Score=431.85  Aligned_cols=193  Identities=37%  Similarity=0.587  Sum_probs=165.6

Q ss_pred             CcccccccccceEEcCC-CceeecCCCcccCCCceeeecCcccchH----------------HHHHHHHHHHHhhCCCCC
Q 039388            1 SELVLLYENGPVHTAND-LSLVWNDCSSDKASNLMFVDQLTENGVS----------------NNLYDFLQAFFVEHPCYD   63 (208)
Q Consensus         1 S~~G~f~e~GP~~~~~~-~~l~~n~~sW~~~an~lfiDqPv~~g~s----------------~~~~~fl~~f~~~~p~~~   63 (208)
                      |+.|+|.|+|||+++.| .+|..||+|||+.|||||||||||||||                +|+++||++||++||||+
T Consensus        87 Sl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~  166 (454)
T KOG1282|consen   87 SLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYK  166 (454)
T ss_pred             chhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhc
Confidence            78899999999999977 4699999999999999999999999997                689999999999999999


Q ss_pred             CCCeEEEcccccccccccccccccccccc------------------------------------------------CCC
Q 039388           64 KNDFYITGESYAGHYIPAFASPHYSTRKK------------------------------------------------YEG   95 (208)
Q Consensus        64 ~~~~~i~geSY~G~yip~~a~~~yd~~~~------------------------------------------------c~~   95 (208)
                      +|||||+||||||||||+||+++.+-.+.                                                |..
T Consensus       167 ~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~~~~~~~~~~~a~~h~liSde~~~~l~~~C~~  246 (454)
T KOG1282|consen  167 SNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNGLTDPEIDYNGRIPFAWGHGLISDELYESLKRACDF  246 (454)
T ss_pred             CCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCcccCccccccchhhhhhhcccCCHHHHHHHHHHhcc
Confidence            99999999999999999999983322211                                                110


Q ss_pred             -------------------------------------Ccccc------------------chhhhhccCchHHHHHhCCC
Q 039388           96 -------------------------------------EYCYD------------------LSIMEKFLNEKSVKDALGAM  120 (208)
Q Consensus        96 -------------------------------------~~c~~------------------~~~~~~yLN~~~Vr~ALhV~  120 (208)
                                                           +.|+.                  ....++|||+++||+||||+
T Consensus       247 ~~~~~~~~~~~~~~C~~~~~~~~~~~~~~i~~y~i~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~ylN~~~VrkALh~~  326 (454)
T KOG1282|consen  247 SSDNYANVDPSNTKCNKAVEEFDSKTTGDIDNYYILTPDCYPTSYELKKPTDCYGYDPCLSDYAEKYLNRPEVRKALHAN  326 (454)
T ss_pred             CcccccccCCchhHHHHHHHHHHHHHhccCchhhhcchhhccccccccccccccccCCchhhhHHHhcCCHHHHHHhCCC
Confidence                                                 11321                  01225799999999999998


Q ss_pred             C-c--ccccccHhHhHH-------H---------------hhhcC-------chhhHHHHcccccccchhhhcCCcceee
Q 039388          121 D-I--RFDLCNKNVSIA-------L---------------VFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPFK  168 (208)
Q Consensus       121 ~-~--~w~~cs~~V~~~-------l---------------LiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~  168 (208)
                      . .  +|+.||+.|...       |               |||+|       ++|+++||++|+++.     .++|+||+
T Consensus       327 ~~~~~~W~~Cn~~v~~~~~~~~~sm~p~~~~~~~~~~~rvliysGD~D~~~p~~gt~~~i~~L~~~~-----~~~~~pW~  401 (454)
T KOG1282|consen  327 KTSIGKWERCNDEVNYNYNDDIKSMLPIHKKLIASGGYRVLIYSGDHDLVVPFLGTQAWIKSLNLSI-----TDEWRPWY  401 (454)
T ss_pred             CCCCCcccccChhhhcccccCccchHHHHHHHhhcCceEEEEEeCCcceeCcchhhHHHHHhccCcc-----ccCccCCc
Confidence            3 2  699999999531       1               99999       999999999999664     78999999


Q ss_pred             eC-CEeeeEEEEecCcEEEEEeeeccccceecCccccCcCC
Q 039388          169 VD-GAKAGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG  208 (208)
Q Consensus       169 v~-g~~~G~~k~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d  208 (208)
                      ++ +|+|||+|+|++|+|+|          |+|||||||.|
T Consensus       402 ~~~~qvaG~~~~Y~~ltf~t----------VrGaGH~VP~~  432 (454)
T KOG1282|consen  402 HKGGQVAGYTKTYGGLTFAT----------VRGAGHMVPYD  432 (454)
T ss_pred             cCCCceeeeEEEecCEEEEE----------EeCCcccCCCC
Confidence            96 89999999999999999          99999999986

>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PTZ00472 serine carboxypeptidase (CBP1); Provisional Back     alignment and domain information
>PLN02209 serine carboxypeptidase Back     alignment and domain information
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase Back     alignment and domain information
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase Back     alignment and domain information
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A Back     alignment and domain information
>PRK05077 frsA fermentation/respiration switch protein; Reviewed Back     alignment and domain information
>TIGR03611 RutD pyrimidine utilization protein D Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
1wpx_A 421 Crystal Structure Of Carboxypeptidase Y Inhibitor C 1e-09
1cpy_A 421 Site-Directed Mutagenesis On (Serine) Carboxypeptid 2e-08
1wht_A256 Structure Of The Complex Of L-Benzylsuccinate With 4e-06
1whs_A255 Structure Of The Complex Of L-Benzylsuccinate With 4e-06
1bcr_A263 Complex Of The Wheat Serine Carboxypeptidase, Cpdw- 4e-06
3sc2_A259 Refined Atomic Model Of Wheat Serine Carboxypeptida 4e-06
1ac5_A 483 Crystal Structure Of Kex1(delta)p, A Prohormone-pro 4e-05
1gxs_A270 Crystal Structure Of Hydroxynitrile Lyase From Sorg 1e-04
1ivy_A 452 Physiological Dimer Hpp Precursor Length = 452 1e-04
4az0_A300 Crystal Structure Of Cathepsin A, Complexed With 8a 2e-04
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor Complexed With The Cognate Proteinase Length = 421 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 16/104 (15%)
Query: 5   LLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLT--------ENGVSN------NLYD 50
           L +E GP     DL  + N  S +  + ++F+DQ           +GVSN      ++Y+
Sbjct: 62  LFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYN 121
Query: 51  FLQAFFVEHPCY--DKNDFYITGESYAGHYIPAFASPHYSTRKK 92
           FL+ FF + P Y     DF+I GESYAGHYIP FAS   S + +
Sbjct: 122 FLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDR 165
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y From Yeast. The Significance Of Thr 60 And Met 398 In Hydrolysis And Aminolysis Reactions Length = 421 Back     alignment and structure
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution Length = 256 Back     alignment and structure
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution Length = 255 Back     alignment and structure
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii, With The Microbial Peptide Aldehyde Inhibitor, Antipain, And Arginine At Room Temperature Length = 263 Back     alignment and structure
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii At 2.2- Angstroms Resolution Length = 259 Back     alignment and structure
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing Carboxypeptidase From Saccharomyces Cerevisiae Length = 483 Back     alignment and structure
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum Bicolor In Complex With Inhibitor Benzoic Acid: A Novel Cyanogenic Enzyme Length = 270 Back     alignment and structure
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor Length = 452 Back     alignment and structure
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a. Length = 300 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
1cpy_A 421 Serine carboxypeptidase; hydrolase (carboxypeptida 5e-26
1cpy_A421 Serine carboxypeptidase; hydrolase (carboxypeptida 5e-17
1ac5_A 483 KEX1(delta)P; carboxypeptidase, hydrolase, glycopr 5e-26
1ac5_A483 KEX1(delta)P; carboxypeptidase, hydrolase, glycopr 4e-14
1whs_A255 Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T 7e-26
1ivy_A 452 Human protective protein; carboxypeptidase, serine 4e-24
1ivy_A452 Human protective protein; carboxypeptidase, serine 3e-13
1gxs_A270 P-(S)-hydroxymandelonitrIle lyase chain A; inhibit 1e-21
1gxs_B158 P-(S)-hydroxymandelonitrIle lyase chain B; inhibit 3e-12
1whs_B153 Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T 4e-12
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A* Length = 421 Back     alignment and structure
 Score =  102 bits (257), Expect = 5e-26
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 16/100 (16%)

Query: 1   SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQ--------------LTENGVSN 46
           S   L +  GP     DL  + N  S +  + ++F+DQ                      
Sbjct: 58  SLTGLFFALGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGK 117

Query: 47  NLYDFLQAFFVEHPCYDK--NDFYITGESYAGHYIPAFAS 84
           ++Y+FL+ FF + P Y     DF+I G SYAGHYIP FAS
Sbjct: 118 DVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFAS 157
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A* Length = 421 Back     alignment and structure
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5 Length = 483 Back     alignment and structure
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5 Length = 483 Back     alignment and structure
>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* Length = 255 Back     alignment and structure
>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 Length = 452 Back     alignment and structure
>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 Length = 452 Back     alignment and structure
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 Length = 270 Back     alignment and structure
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 Length = 158 Back     alignment and structure
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B* Length = 153 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
1cpy_A421 Serine carboxypeptidase; hydrolase (carboxypeptida 100.0
1ac5_A483 KEX1(delta)P; carboxypeptidase, hydrolase, glycopr 100.0
1ivy_A452 Human protective protein; carboxypeptidase, serine 100.0
4az3_A300 Lysosomal protective protein 32 kDa chain; hydrola 100.0
4az3_B155 Lysosomal protective protein 20 kDa chain; hydrola 99.96
1whs_A255 Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T 99.96
1gxs_A270 P-(S)-hydroxymandelonitrIle lyase chain A; inhibit 99.95
1gxs_B158 P-(S)-hydroxymandelonitrIle lyase chain B; inhibit 99.95
1whs_B153 Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T 99.95
3dqz_A258 Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl 83.91
3r0v_A262 Alpha/beta hydrolase fold protein; structural geno 83.4
3fla_A267 RIFR; alpha-beta hydrolase thioesterase, hydrolase 80.71
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-60  Score=432.94  Aligned_cols=198  Identities=36%  Similarity=0.652  Sum_probs=176.9

Q ss_pred             CcccccccccceEEcCCCceeecCCCcccCCCceeeecCcccchH--------------HHHHHHHHHHHhhCCCCCC--
Q 039388            1 SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVS--------------NNLYDFLQAFFVEHPCYDK--   64 (208)
Q Consensus         1 S~~G~f~e~GP~~~~~~~~l~~n~~sW~~~an~lfiDqPv~~g~s--------------~~~~~fl~~f~~~~p~~~~--   64 (208)
                      |+.|+|.|+|||+++.+.+++.||+||++.|||||||||||||||              +|+++||+.||++||+|++  
T Consensus        58 S~~g~~~e~GP~~~~~~~~l~~n~~sW~~~an~lfiDqPvGtGfSy~~~~~~~~~~~~a~~~~~fl~~~~~~~p~~~~~~  137 (421)
T 1cpy_A           58 SLTGLFFALGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKG  137 (421)
T ss_dssp             THHHHTTTTSSEEEETTTEEEECTTCGGGGSEEECCCCSTTSTTCEESSCCCCSSHHHHHHHHHHHHHHHHHCTTSTTTT
T ss_pred             hHHHHHHccCCcEECCCCceeECCcccccccCEEEecCCCcccccCCCCCCCCChHHHHHHHHHHHHHHHHhCHHhcccC
Confidence            788999999999999889999999999999999999999999997              5899999999999999999  


Q ss_pred             CCeEEEcccccccccccccccc----------------------------------------------------------
Q 039388           65 NDFYITGESYAGHYIPAFASPH----------------------------------------------------------   86 (208)
Q Consensus        65 ~~~~i~geSY~G~yip~~a~~~----------------------------------------------------------   86 (208)
                      +|+||+||||||+|||.+|.++                                                          
T Consensus       138 ~~~yi~GESY~G~y~p~~a~~i~~~n~~~inLkGi~IGNg~~dp~~q~~~~~~~a~~~g~~~~li~~~~~~~~~~~~~~c  217 (421)
T 1cpy_A          138 QDFHIAGASYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERC  217 (421)
T ss_dssp             CCEEEEEETTHHHHHHHHHHHHTTCSSCSSCCCEEEEESCCCCHHHHGGGHHHHHTTCSSSCCCSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeecccccccHHHHHHHHhccccccceeeEEecCcccChhhhhhhHHHHHhhcCCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999771                                                          


Q ss_pred             --------------------------------------ccccccCCC-Ccccc-chhhhhccCchHHHHHhCCCCccccc
Q 039388           87 --------------------------------------YSTRKKYEG-EYCYD-LSIMEKFLNEKSVKDALGAMDIRFDL  126 (208)
Q Consensus        87 --------------------------------------yd~~~~c~~-~~c~~-~~~~~~yLN~~~Vr~ALhV~~~~w~~  126 (208)
                                                            ||++++|.. +.|++ ...++.|||+++||+||||+...|+.
T Consensus       218 ~~~i~~c~~~~~~~~c~~a~~~c~~~~~~~~~~~~~n~Ydi~~~c~~~~~c~~~~~~~~~ylN~~~V~~AL~v~~~~w~~  297 (421)
T 1cpy_A          218 LGLIESCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYES  297 (421)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTHHHHHHCCBTTBSSSCCCSSSCSSTHHHHHHHHHHSHHHHHHTTCCCSCCCS
T ss_pred             HHHHHhhhcccccchhhHHHHHHHHHHHHHHhcCCCChhhccccCCCCCccccchhHHHHHhCCHHHHHHhCCCCCceEE
Confidence                                                  222223322 33554 25678999999999999998667999


Q ss_pred             ccHhHhHHH------------------------hhhcC-------chhhHHHHcccccccchhhhcCCcceeee--CCEe
Q 039388          127 CNKNVSIAL------------------------VFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPFKV--DGAK  173 (208)
Q Consensus       127 cs~~V~~~l------------------------LiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~v--~g~~  173 (208)
                      ||+.|+.++                        |||+|       ++|+++|+++|+|+++++|++++|+||++  +|++
T Consensus       298 cs~~V~~~~~~~~d~~~p~~~~l~~LL~~girVlIysGd~D~i~~~~Gt~~wi~~L~w~~~~~F~~a~~~~w~~~~~~~v  377 (421)
T 1cpy_A          298 CNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV  377 (421)
T ss_dssp             BCHHHHHHHHTTTGGGSCTHHHHHHHHHTTCCEEEEEETTCSTTCHHHHHHHHHHCCSTTHHHHHHSCCEEEECTTTCSE
T ss_pred             CchhHhhhhhhcCCcccchHHHHHHHHhcCCeEEEEECCcccccChHHHHHHHHhccCccchhhhhccccceEEcCCCce
Confidence            999986432                        89999       89999999999999999999999999998  8999


Q ss_pred             eeEEEEecCcEEEEEeeeccccceecCccccCcCC
Q 039388          174 AGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG  208 (208)
Q Consensus       174 ~G~~k~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d  208 (208)
                      +|++|++++|||++          |++||||||+|
T Consensus       378 aG~~~~~~~Ltf~~----------V~~AGHmVP~d  402 (421)
T 1cpy_A          378 AGEVKSYKHFTYLR----------VFNGGHMVPFD  402 (421)
T ss_dssp             EEEECEETTEEEEE----------ETTCCSSHHHH
T ss_pred             eeEEEEeccEEEEE----------ECCCcccCccc
Confidence            99999999999999          99999999975
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5 Back     alignment and structure
>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 Back     alignment and structure
>4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* Back     alignment and structure
>4az3_B Lysosomal protective protein 20 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_B* Back     alignment and structure
>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* Back     alignment and structure
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 Back     alignment and structure
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5 Back     alignment and structure
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B* Back     alignment and structure
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 Back     alignment and structure
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} Back     alignment and structure
>3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 208
d1ac5a_ 483 c.69.1.5 (A:) Serine carboxypeptidase II {Baker's 4e-17
d1ac5a_483 c.69.1.5 (A:) Serine carboxypeptidase II {Baker's 2e-07
d1ivya_ 452 c.69.1.5 (A:) Human 'protective protein', HPP {Hum 5e-16
d1ivya_452 c.69.1.5 (A:) Human 'protective protein', HPP {Hum 1e-09
g1wht.1 409 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat 1e-15
g1wht.1409 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat 2e-07
d1wpxa1 421 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Bak 3e-15
d1wpxa1421 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Bak 4e-09
g1gxs.1 425 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (So 9e-09
g1gxs.1425 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (So 2e-07
>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} Length = 483 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Serine carboxypeptidase-like
domain: Serine carboxypeptidase II
species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]

 Score = 76.8 bits (188), Expect = 4e-17
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 23/107 (21%)

Query: 1   SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENG----------------- 43
           S    L E+GP    +D  L  N+ S     +L+F+DQ T  G                 
Sbjct: 81  SMDGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKF 140

Query: 44  ------VSNNLYDFLQAFFVEHPCYDKNDFYITGESYAGHYIPAFAS 84
                 V+ +  DFL+ +F   P        ++GESYAG YIP FA+
Sbjct: 141 DEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFAN 187
>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} Length = 483 Back     information, alignment and structure
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} Length = 452 Back     information, alignment and structure
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} Length = 452 Back     information, alignment and structure
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 421 Back     information, alignment and structure
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 421 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
d1wpxa1421 Serine carboxypeptidase II {Baker's yeast (Sacchar 100.0
d1ac5a_483 Serine carboxypeptidase II {Baker's yeast (Sacchar 100.0
d1ivya_452 Human 'protective protein', HPP {Human (Homo sapie 100.0
g1wht.1409 Serine carboxypeptidase II {Wheat (Triticum vulgar 100.0
g1gxs.1425 Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T 100.0
d2jbwa1360 2,6-dihydropseudooxynicotine hydrolase {Arthrobact 85.33
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Serine carboxypeptidase-like
domain: Serine carboxypeptidase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-59  Score=420.57  Aligned_cols=198  Identities=37%  Similarity=0.667  Sum_probs=175.3

Q ss_pred             CcccccccccceEEcCCCceeecCCCcccCCCceeeecCcccchH--------------HHHHHHHHHHHhhCCCC--CC
Q 039388            1 SELVLLYENGPVHTANDLSLVWNDCSSDKASNLMFVDQLTENGVS--------------NNLYDFLQAFFVEHPCY--DK   64 (208)
Q Consensus         1 S~~G~f~e~GP~~~~~~~~l~~n~~sW~~~an~lfiDqPv~~g~s--------------~~~~~fl~~f~~~~p~~--~~   64 (208)
                      ||.|+|.|+|||+|+++++++.||+||++.|||||||||||||||              +|+++||+.|+++||++  ++
T Consensus        58 S~~g~~~e~GP~~i~~~~~~~~N~~sW~~~anllfiD~PvGtGfSy~~~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~  137 (421)
T d1wpxa1          58 SLTGLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKG  137 (421)
T ss_dssp             THHHHHHTTSSEEECTTSCEEECTTCGGGSSEEEEECCSTTSTTCBCSSCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTC
T ss_pred             HHHHHHHhcCCcEECCCCccccCCcccccccCEEEEecCCCCCceecCCccccchHHHHHHHHHHHHHHHHhChhhhccC
Confidence            789999999999999999999999999999999999999999997              58999999999999999  78


Q ss_pred             CCeEEEcccccccccccccccc----------------------------------------------------------
Q 039388           65 NDFYITGESYAGHYIPAFASPH----------------------------------------------------------   86 (208)
Q Consensus        65 ~~~~i~geSY~G~yip~~a~~~----------------------------------------------------------   86 (208)
                      +|+||+||||||+|||.||.++                                                          
T Consensus       138 ~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~dp~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  217 (421)
T d1wpxa1         138 QDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERC  217 (421)
T ss_dssp             CCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCCHHHHGGGHHHHHTTCSSSCCCSCHHHHHHHHHHHHHH
T ss_pred             CCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCcccchhhhhhHHHHHhhcccccccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999881                                                          


Q ss_pred             --------------------------------------ccccccCCC-Ccccc-chhhhhccCchHHHHHhCCCCccccc
Q 039388           87 --------------------------------------YSTRKKYEG-EYCYD-LSIMEKFLNEKSVKDALGAMDIRFDL  126 (208)
Q Consensus        87 --------------------------------------yd~~~~c~~-~~c~~-~~~~~~yLN~~~Vr~ALhV~~~~w~~  126 (208)
                                                            ||++..|.. +.|+. ...+..|||+++||+||||+..+|+.
T Consensus       218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ylN~~~Vq~aL~v~~~~~~~  297 (421)
T d1wpxa1         218 LGLIESCYDSQSVWSCVPATIYCNNAQLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYES  297 (421)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHTHHHHHTTBCSSCTTSBCCSSTTSCTTHHHHHHHHTSHHHHHHHTCCSSSCCS
T ss_pred             HHHHHhhccchhhhhhhhhhhhhcccccchhhhcCcccccccccccCCCcCCCcHhhhhhhhccHHHHHHhCCCCCccee
Confidence                                                  222222221 12221 24678899999999999998778999


Q ss_pred             ccHhHhHHH------------------------hhhcC-------chhhHHHHcccccccchhhhcCCcceeee--CCEe
Q 039388          127 CNKNVSIAL------------------------VFYLL-------SAENSKWVHAVEWSGRKDFEVALTAPFKV--DGAK  173 (208)
Q Consensus       127 cs~~V~~~l------------------------LiY~G-------~~G~~~wi~~L~W~g~~~F~~a~~~~~~v--~g~~  173 (208)
                      ||..|..++                        |||+|       +.|+++||++|+|++.++|++++++||+.  ++++
T Consensus       298 cs~~v~~~~~~~~d~~~~~~~~l~~LL~~~irVLIysGd~D~~~p~~Gte~~i~~L~w~~~~~f~~~~~~~w~~~~~~~~  377 (421)
T d1wpxa1         298 CNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEV  377 (421)
T ss_dssp             BCHHHHHHHHTTTCTTCCTTHHHHHHHHTTCCEEEEEETTCSTTCHHHHHHHHHHCCSTTHHHHHHSCCEEEECTTTCSE
T ss_pred             cCchHhhhhhccCcccCcHHHHHHHHHhcCCeEEEEeCCcCccCCchhHHHHHHhCCCCcccchhcCcccceeecCCCeE
Confidence            999886542                        99999       89999999999999999999999999985  6799


Q ss_pred             eeEEEEecCcEEEEEeeeccccceecCccccCcCC
Q 039388          174 AGQMKSYRLLTLLRIYFCLFIENEVHNSGHMVPTG  208 (208)
Q Consensus       174 ~G~~k~~~~ltf~~~~~~~~~~~~V~~AGHmvP~d  208 (208)
                      +||+|+++||||++          |++||||||+|
T Consensus       378 aG~~~~~~nltf~~----------V~~AGHmvP~d  402 (421)
T d1wpxa1         378 AGEVKSYKHFTYLR----------VFNGGHMVPFD  402 (421)
T ss_dssp             EEEEEEETTEEEEE----------ETTCCSSHHHH
T ss_pred             EEEEEEECCeEEEE----------ECCccccCccc
Confidence            99999999999999          99999999975
>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} Back     information, alignment and structure
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure