Citrus Sinensis ID: 039410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
FFLVFIPCNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFNG
cEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccHHHHHHHHHHccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHcHHHHHHHHHcccccccccHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccc
cEEEEcccccccEccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHccccccccccccccHHHcccHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHccEEEHHHcHHHcccHHHcccccccccHHHHHHHHHHcccccccccEEccccccccccccccHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEcccccEcccccccccc
fflvfipcnarlkhdfykktcpNVEKIIYNVASQKLLEAPVTAAGALRIFFhdcfvegcdASVLIASsktnkaerdseinlslpgdgyeVFFRAKRAlelqcpgivsCADIMAIATRDLVHlaggprwevpkgrrdgliskasrvegnlphvnQTISQTISLfkskglstLDMVALSgghtigfshckefmpriysynkthdidptmnQDFARslrgscpkskkldptvvalndvstpfvfdnfyYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSnigvktgkdgeirrdcgsfng
fflvfipcnarlkhdfykkTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASsktnkaerdseinlslpgdGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLaggprwevpkgrRDGLISkasrvegnlphvnQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLsnigvktgkdgeirrdcgsfng
FFLVFIPCNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFNG
*FLVFIPCNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIA************INLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLIS****VEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDID********************LDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKT***************
FFLV***CNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNK*ERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCP**KKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFNG
FFLVFIPCNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASS*********EINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFNG
FFLVFIPCNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCG****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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FFLVFIPCNARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
Q9FJR1334 Peroxidase 65 OS=Arabidop yes no 0.952 0.898 0.537 8e-92
O23609326 Peroxidase 41 OS=Arabidop no no 0.942 0.911 0.537 2e-90
Q9SZE7329 Peroxidase 51 OS=Arabidop no no 0.961 0.920 0.508 9e-90
Q43731329 Peroxidase 50 OS=Arabidop no no 0.961 0.920 0.498 3e-88
O48677326 Peroxidase 6 OS=Arabidops no no 0.987 0.953 0.504 2e-85
Q43873329 Peroxidase 73 OS=Arabidop no no 0.961 0.920 0.491 5e-85
Q9FL16328 Peroxidase 63 OS=Arabidop no no 0.949 0.911 0.527 2e-83
Q96510329 Peroxidase 35 OS=Arabidop no no 0.961 0.920 0.485 6e-83
Q9LHA7316 Peroxidase 31 OS=Arabidop no no 0.946 0.943 0.514 2e-82
O22959346 Peroxidase 19 OS=Arabidop no no 0.958 0.872 0.480 2e-78
>sp|Q9FJR1|PER65_ARATH Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2 Back     alignment and function desciption
 Score =  337 bits (864), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 164/305 (53%), Positives = 213/305 (69%), Gaps = 5/305 (1%)

Query: 10  ARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSK 69
           A L+ D+Y+KTCP+  KI+    + K ++ P TAAG LR+FFHDCF+EGCDASVLIA++ 
Sbjct: 31  AILRTDYYQKTCPDFHKIVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGCDASVLIATNS 90

Query: 70  TNKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWE 129
            NKAERD ++N SLPGD +++  R K ALEL CPG+VSCADI+A ATRDLV + GGP ++
Sbjct: 91  FNKAERDDDLNDSLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPYFD 150

Query: 130 VPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKE 189
           V  GR+DG  SKA +V GN+P  NQT+     +FK  G S  +MVALSG HTIGFSHCKE
Sbjct: 151 VKLGRKDGFESKAHKVRGNVPMANQTVPDIHGIFKKNGFSLREMVALSGAHTIGFSHCKE 210

Query: 190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
           F  R+Y      +I+P     FA +L+  C K+  +D T+ A NDV TP  FDN Y+KN+
Sbjct: 211 FSDRLYGSRADKEINPR----FAAALKDLC-KNHTVDDTIAAFNDVMTPGKFDNMYFKNL 265

Query: 250 KKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRD 309
           K+GLGLLA+D +L+ D+ T+ +V   A  +TAFF+ F  AM KL  +GVK  KDGE+RR 
Sbjct: 266 KRGLGLLASDHILIKDNSTKPFVDLYATNETAFFEDFARAMEKLGTVGVKGDKDGEVRRR 325

Query: 310 CGSFN 314
           C  FN
Sbjct: 326 CDHFN 330
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|O23609|PER41_ARATH Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=3 SV=1 Back     alignment and function description
>sp|Q9SZE7|PER51_ARATH Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1 Back     alignment and function description
>sp|Q43731|PER50_ARATH Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1 Back     alignment and function description
>sp|O48677|PER6_ARATH Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1 Back     alignment and function description
>sp|Q43873|PER73_ARATH Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1 Back     alignment and function description
>sp|Q9FL16|PER63_ARATH Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1 Back     alignment and function description
>sp|Q96510|PER35_ARATH Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHA7|PER31_ARATH Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1 Back     alignment and function description
>sp|O22959|PER19_ARATH Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
224093991302 predicted protein [Populus trichocarpa] 0.958 1.0 0.801 1e-142
296085261336 unnamed protein product [Vitis vinifera] 0.958 0.898 0.732 1e-130
225462547365 PREDICTED: peroxidase 51-like [Vitis vin 0.958 0.827 0.732 1e-130
294462186334 unknown [Picea sitchensis] 0.961 0.907 0.572 1e-100
225457136327 PREDICTED: peroxidase 65 [Vitis vinifera 0.965 0.929 0.557 2e-99
302811092328 hypothetical protein SELMODRAFT_125631 [ 0.965 0.926 0.594 2e-98
302789269328 hypothetical protein SELMODRAFT_104905 [ 0.965 0.926 0.588 2e-98
302780890332 hypothetical protein SELMODRAFT_97331 [S 0.955 0.906 0.570 5e-98
225452562323 PREDICTED: peroxidase 31-like [Vitis vin 0.974 0.950 0.542 3e-97
225424781328 PREDICTED: peroxidase 65-like [Vitis vin 0.990 0.951 0.557 7e-97
>gi|224093991|ref|XP_002310058.1| predicted protein [Populus trichocarpa] gi|222852961|gb|EEE90508.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/303 (80%), Positives = 267/303 (88%), Gaps = 1/303 (0%)

Query: 12  LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
           L +DFY KTCPNVEKII NV SQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIAS ++N
Sbjct: 1   LSYDFYNKTCPNVEKIIRNVVSQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASRESN 60

Query: 72  KAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVP 131
           KAERD+EINLSLPGDGY+VFFRAKRALELQCPG VSCAD+MAIATRDLV+L GGPRWEV 
Sbjct: 61  KAERDAEINLSLPGDGYDVFFRAKRALELQCPGFVSCADVMAIATRDLVNLVGGPRWEVK 120

Query: 132 KGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFM 191
           KGRRDGLISKASRV+GNLP VNQTI Q ISLFKS+GLST+DMVALSGGHTIGFSHCKEFM
Sbjct: 121 KGRRDGLISKASRVDGNLPQVNQTIPQLISLFKSRGLSTMDMVALSGGHTIGFSHCKEFM 180

Query: 192 PRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKK 251
           PRIY YN T DIDPTMNQ++AR+LR  CP+ + LDPTVVALNDV+TPF+FDN YY N+KK
Sbjct: 181 PRIYGYNSTFDIDPTMNQEYARTLRSPCPQ-RHLDPTVVALNDVTTPFIFDNAYYHNLKK 239

Query: 252 GLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCG 311
           GLGLLA+DQML+LD  TR YV  MA  +  FF +FV +MIKL  +GVKTG DGEIRR C 
Sbjct: 240 GLGLLASDQMLVLDPLTRGYVDMMAADQQLFFNYFVESMIKLGQVGVKTGSDGEIRRRCD 299

Query: 312 SFN 314
           SFN
Sbjct: 300 SFN 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085261|emb|CBI28993.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462547|ref|XP_002267108.1| PREDICTED: peroxidase 51-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|294462186|gb|ADE76645.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|225457136|ref|XP_002280359.1| PREDICTED: peroxidase 65 [Vitis vinifera] gi|147811771|emb|CAN68188.1| hypothetical protein VITISV_013676 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302811092|ref|XP_002987236.1| hypothetical protein SELMODRAFT_125631 [Selaginella moellendorffii] gi|300145133|gb|EFJ11812.1| hypothetical protein SELMODRAFT_125631 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302789269|ref|XP_002976403.1| hypothetical protein SELMODRAFT_104905 [Selaginella moellendorffii] gi|300156033|gb|EFJ22663.1| hypothetical protein SELMODRAFT_104905 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302780890|ref|XP_002972219.1| hypothetical protein SELMODRAFT_97331 [Selaginella moellendorffii] gi|300159686|gb|EFJ26305.1| hypothetical protein SELMODRAFT_97331 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|225452562|ref|XP_002280547.1| PREDICTED: peroxidase 31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424781|ref|XP_002267024.1| PREDICTED: peroxidase 65-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
TAIR|locus:2170997334 AT5G47000 [Arabidopsis thalian 0.952 0.898 0.537 2.4e-85
TAIR|locus:2129386326 AT4G17690 [Arabidopsis thalian 0.971 0.938 0.529 5.6e-84
TAIR|locus:2120061329 AT4G37530 [Arabidopsis thalian 0.987 0.945 0.501 2.2e-82
TAIR|locus:2120051329 AT4G37520 [Arabidopsis thalian 0.965 0.924 0.496 1.1e-80
TAIR|locus:2032392326 AT1G24110 [Arabidopsis thalian 0.987 0.953 0.504 2.6e-79
TAIR|locus:2158227329 RHS19 "root hair specific 19" 0.961 0.920 0.491 6.2e-78
TAIR|locus:2083088329 AT3G49960 [Arabidopsis thalian 0.961 0.920 0.485 9e-77
TAIR|locus:2098308316 AT3G28200 [Arabidopsis thalian 0.971 0.968 0.511 1.5e-76
TAIR|locus:2173757328 AT5G40150 [Arabidopsis thalian 0.949 0.911 0.527 3.1e-76
TAIR|locus:2055501346 AT2G34060 [Arabidopsis thalian 0.955 0.869 0.481 5.9e-73
TAIR|locus:2170997 AT5G47000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 164/305 (53%), Positives = 213/305 (69%)

Query:    10 ARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSK 69
             A L+ D+Y+KTCP+  KI+    + K ++ P TAAG LR+FFHDCF+EGCDASVLIA++ 
Sbjct:    31 AILRTDYYQKTCPDFHKIVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGCDASVLIATNS 90

Query:    70 TNKAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWE 129
              NKAERD ++N SLPGD +++  R K ALEL CPG+VSCADI+A ATRDLV + GGP ++
Sbjct:    91 FNKAERDDDLNDSLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGPYFD 150

Query:   130 VPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKE 189
             V  GR+DG  SKA +V GN+P  NQT+     +FK  G S  +MVALSG HTIGFSHCKE
Sbjct:   151 VKLGRKDGFESKAHKVRGNVPMANQTVPDIHGIFKKNGFSLREMVALSGAHTIGFSHCKE 210

Query:   190 FMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNI 249
             F  R+Y      +I+P     FA +L+  C K+  +D T+ A NDV TP  FDN Y+KN+
Sbjct:   211 FSDRLYGSRADKEINPR----FAAALKDLC-KNHTVDDTIAAFNDVMTPGKFDNMYFKNL 265

Query:   250 KKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRD 309
             K+GLGLLA+D +L+ D+ T+ +V   A  +TAFF+ F  AM KL  +GVK  KDGE+RR 
Sbjct:   266 KRGLGLLASDHILIKDNSTKPFVDLYATNETAFFEDFARAMEKLGTVGVKGDKDGEVRRR 325

Query:   310 CGSFN 314
             C  FN
Sbjct:   326 CDHFN 330
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009044 "xylan 1,4-beta-xylosidase activity" evidence=TAS
TAIR|locus:2129386 AT4G17690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120061 AT4G37530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120051 AT4G37520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032392 AT1G24110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158227 RHS19 "root hair specific 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083088 AT3G49960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098308 AT3G28200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173757 AT5G40150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055501 AT2G34060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FJR1PER65_ARATH1, ., 1, 1, ., 1, ., 70.53770.95230.8982yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.946
3rd Layer1.11.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.2375.1
hypothetical protein (302 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-169
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 1e-80
pfam00141180 pfam00141, peroxidase, Peroxidase 1e-56
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 3e-26
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 4e-19
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 3e-16
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 1e-14
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 5e-11
cd00692328 cd00692, ligninase, Ligninase and other manganese- 4e-06
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 2e-05
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  470 bits (1212), Expect = e-169
 Identities = 156/302 (51%), Positives = 195/302 (64%), Gaps = 5/302 (1%)

Query: 12  LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
           L   FY K+CPN E I+ +V    +   P  AA  LR+ FHDCFV GCDASVL+ S+  N
Sbjct: 2   LSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANN 61

Query: 72  KAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVP 131
            +E+D+  NLSL   G++V    K ALE  CPG+VSCADI+A+A RD V LAGGP +EVP
Sbjct: 62  TSEKDAPPNLSL--RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVP 119

Query: 132 KGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFM 191
            GRRDG +S A+ V GNLP    ++SQ ISLF SKGL+  D+VALSG HTIG +HC  F 
Sbjct: 120 LGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFS 178

Query: 192 PRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKK 251
            R+Y+++ T D DPT++  +A  LR  CP     D   +   D  TP  FDN YYKN+  
Sbjct: 179 DRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGG--DDDTLVPLDPGTPNTFDNSYYKNLLA 236

Query: 252 GLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCG 311
           G GLL +DQ LL D RTRA V R A  + AFF+ F  AM+K+ NIGV TG  GEIR++C 
Sbjct: 237 GRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCR 296

Query: 312 SF 313
             
Sbjct: 297 VV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 100.0
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 100.0
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.54
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-104  Score=746.70  Aligned_cols=298  Identities=43%  Similarity=0.758  Sum_probs=283.2

Q ss_pred             CCCCCcchhhcCCccHHHHHHHHHHHHHHhCCCchhhhHHHHhhccCCCCCCceEEecCCCCCccccCcccCCCCCccch
Q 039410            9 NARLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGY   88 (315)
Q Consensus         9 ~~~l~~~~y~~sCp~~e~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~   88 (315)
                      +++|+++||++|||++|+||++.|++.+.++|+++|++|||+|||||++||||||||+++   ..|+++++|.+|  +||
T Consensus        22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l--~Gf   96 (324)
T PLN03030         22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLL--RGY   96 (324)
T ss_pred             hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCc--chH
Confidence            367999999999999999999999999999999999999999999999999999999864   369999999999  999


Q ss_pred             HHHHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCC
Q 039410           89 EVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGL  168 (315)
Q Consensus        89 ~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl  168 (315)
                      ++|+.||+.+|+.||++|||||||+||||+||+++|||.|+|++||+|+++|...++ .+||.|+.+++++++.|+++||
T Consensus        97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~-~~LP~p~~~~~~l~~~F~~~Gl  175 (324)
T PLN03030         97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDA-SNLPGFTDSIDVQKQKFAAKGL  175 (324)
T ss_pred             HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccc-cCCcCCCCCHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999999987766 4899999999999999999999


Q ss_pred             ChhhhHhhhcccccccccccccccccccCCCCC-CCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHH
Q 039410          169 STLDMVALSGGHTIGFSHCKEFMPRIYSYNKTH-DIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYK  247 (315)
Q Consensus       169 ~~~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~  247 (315)
                      +.+|||+||||||||++||.+|.+|||||.+++ .+||+||++|++.|++.||.  .++.+..+++|+.||.+|||+||+
T Consensus       176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~--~~~~~~~~~lD~~Tp~~FDn~Yy~  253 (324)
T PLN03030        176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ--NGDGSRRIALDTGSSNRFDASFFS  253 (324)
T ss_pred             CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC--CCCCCccccCCCCCCcccccHHHH
Confidence            999999999999999999999999999999874 58999999999999999995  333334678999999999999999


Q ss_pred             hhhcCcccchhhHHhhcChhHHHHHHHHHHhH----HHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCC
Q 039410          248 NIKKGLGLLATDQMLLLDSRTRAYVKRMADAK----TAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFN  314 (315)
Q Consensus       248 ~l~~~~g~L~sD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~~~n  314 (315)
                      ||++++|+|+|||+|+.|++|+++|++||.|+    +.|+++|++||+||++|+|+||++|||||+|+++|
T Consensus       254 nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        254 NLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             HHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence            99999999999999999999999999999875    59999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 2e-65
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 3e-60
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 9e-60
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 1e-59
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 1e-59
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 2e-59
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 2e-59
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 2e-59
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 2e-59
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 3e-59
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 6e-59
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 8e-59
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 1e-58
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 2e-58
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 1e-57
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 7e-55
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 1e-53
1sch_A294 Peanut Peroxidase Length = 294 3e-52
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 5e-52
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 9e-14
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 6e-13
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 2e-12
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 2e-12
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 2e-12
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 2e-12
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 2e-12
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 2e-12
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 2e-12
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 2e-12
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 2e-12
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 2e-12
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 3e-12
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 2e-09
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 4e-09
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 4e-09
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 1e-05
1krj_A294 Engineering Calcium-Binding Site Into Cytochrome C 3e-05
1stq_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 3e-05
1jdr_A294 Crystal Structure Of A Proximal Domain Potassium Bi 4e-05
1kxn_A289 Crystal Structure Of Cytochrome C Peroxidase With A 1e-04
1sog_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 1e-04
1kxm_A290 Crystal Structure Of Cytochrome C Peroxidase With A 2e-04
3exb_A295 Crystal Structure Of Cytochrome C Peroxidase With A 2e-04
1cyf_A296 Identifying The Physiological Electron Transfer Sit 2e-04
2v2e_A294 Structure Of Isoniazid (Inh) Bound To Cytochrome C 2e-04
1beq_A291 Interaction Between Proximal And Distals Regions Of 2e-04
2v23_A296 Structure Of Cytochrome C Peroxidase Mutant N184r Y 2e-04
3m23_A291 Crystallographic And Single Crystal Spectral Analys 2e-04
4a71_A296 Cytochrome C Peroxidase In Complex With Phenol Leng 3e-04
1s6v_A294 Structure Of A Cytochrome C Peroxidase-Cytochrome C 3e-04
1a2f_A291 Probing The Strength And Character Of An Asp-His-X 3e-04
1bem_A291 Interaction Between Proximal And Distals Regions Of 3e-04
3e2n_A287 Engineering Ascorbate Peroxidase Activity Into Cyto 3e-04
2x07_A293 Cytochrome C Peroxidase: Engineered Ascorbate Bindi 3e-04
1cpg_A296 A Cation Binding Motif Stabilizes The Compound I Ra 4e-04
2xil_A294 The Structure Of Cytochrome C Peroxidase Compound I 4e-04
4ccx_A294 Altering Substrate Specificity At The Heme Edge Of 4e-04
4ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 4e-04
1dcc_A296 2.2 Angstrom Structure Of Oxyperoxidase: A Model Fo 4e-04
1mk8_A294 Crystal Structure Of A Mutant Cytochrome C Peroxida 4e-04
1kok_A294 Crystal Structure Of Mesopone Cytochrome C Peroxida 5e-04
1ebe_A294 Laue Diffraction Study On The Structure Of Cytochro 5e-04
3r98_A293 Joint Neutron And X-Ray Structure Of Cytochrome C P 5e-04
2pcb_A296 Crystal Structure Of A Complex Between Electron Tra 5e-04
2gb8_A294 Solution Structure Of The Complex Between Yeast Iso 5e-04
1dj1_A291 Crystal Structure Of R48a Mutant Of Cytochrome C Pe 5e-04
5ccp_A296 Histidine 52 Is A Critical Residue For Rapid Format 5e-04
6ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 5e-04
1cpd_A296 A Cation Binding Motif Stabilizes The Compound I Ra 5e-04
1bep_A291 Effect Of Unnatural Heme Substitution On Kinetics O 5e-04
7ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 5e-04
2rbu_X292 Cytochrome C Peroxidase In Complex With Cyclopentan 5e-04
1bej_A291 Interaction Between Proximal And Distals Regions Of 5e-04
2xj5_A294 The Structure Of Cytochrome C Peroxidase Compound I 5e-04
2anz_A294 Cytochrome C Peroxidase In Complex With 2,6-Diamino 5e-04
1bva_A294 Manganese Binding Mutant In Cytochrome C Peroxidase 5e-04
1bek_A291 Effect Of Unnatural Heme Substitution On Kinetics O 5e-04
4a7m_A296 Cytochrome C Peroxidase S81w Mutant Length = 296 6e-04
3ccx_A294 Altering Substrate Specificity At The Heme Edge Of 6e-04
2aqd_A294 Cytochrome C Peroxidase (Ccp) In Complex With 2,5- 6e-04
4a78_A296 Cytochrome C Peroxidase M119w In Complex With Guiac 6e-04
1cca_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 6e-04
2cep_A296 Role Of Met-230 In Intramolecular Electron Transfer 6e-04
1cck_A291 Altering Substrate Specificity Of Cytochrome C Pero 6e-04
1ccl_A291 Probing The Strength And Character Of An Asp-His-X 7e-04
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 176/308 (57%), Gaps = 11/308 (3%)
Query: 12  LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
           L+  FY  +CP  E ++    +         A G +R+ FHDCFV GCDASVL+ S+  N
Sbjct: 2   LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 72  KAERDSEINLSLPGD----GYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPR 127
            AE+D+     +P +    G+EV   AK A+E  CP  VSCADI+A A RD  +LAG   
Sbjct: 62  TAEKDA-----IPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNIT 116
Query: 128 WEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHC 187
           ++VP GRRDG +S AS     +P      +Q I+ F +K L+  +MV LSG H+IG +HC
Sbjct: 117 YQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHC 176
Query: 188 KEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCP-KSKKLDPTVVALNDVSTPFVFDNFYY 246
             F  R+Y++N    IDPT++  +A  LR +CP  S +  P  V+L D+ TP V DN YY
Sbjct: 177 SSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSL-DIITPSVLDNMYY 235
Query: 247 KNIKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEI 306
             ++  LGLL +DQ L+ ++   A VK  A   TA+   F  AM+K+  I V TG  GEI
Sbjct: 236 TGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEI 295
Query: 307 RRDCGSFN 314
           R +C   N
Sbjct: 296 RTNCSVVN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m3 Length = 294 Back     alignment and structure
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding Variant Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 289 Back     alignment and structure
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m2 Length = 294 Back     alignment and structure
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 290 Back     alignment and structure
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Pathway Excised In A Complex With A Peptide Wire Length = 295 Back     alignment and structure
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of Cytochrome C Peroxidase By Structure-Based Engineering Length = 296 Back     alignment and structure
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C Peroxidase Mutant N184r Y36a Length = 294 Back     alignment and structure
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a Length = 296 Back     alignment and structure
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of The Peroxidase Ferryl Intermediate Length = 291 Back     alignment and structure
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol Length = 296 Back     alignment and structure
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 294 Back     alignment and structure
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome C Peroxidase Length = 287 Back     alignment and structure
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site Length = 293 Back     alignment and structure
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The Enzyme:peroxide Complex Length = 296 Back     alignment and structure
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase Showing A Novel Trp-Tyr Covalent Cross-Link Length = 294 Back     alignment and structure
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (Mpccp) Length = 294 Back     alignment and structure
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C Peroxidase Length = 293 Back     alignment and structure
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 296 Back     alignment and structure
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1- Cytochrome C And Yeast Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of Cytochrome C Peroxidase Compound I Length = 296 Back     alignment and structure
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With Cyclopentane-Carboximidamide Length = 292 Back     alignment and structure
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii Length = 294 Back     alignment and structure
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With 2,6-Diaminopyridine Length = 294 Back     alignment and structure
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant Length = 296 Back     alignment and structure
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5- Diaminopyridine Length = 294 Back     alignment and structure
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol Length = 296 Back     alignment and structure
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer Between The Oxyferryl Heme And Trp 191 In Cytochrome C Peroxidase Compound Ii Length = 296 Back     alignment and structure
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase Towards A Small Molecular Substrate Peroxidase By Substituting Tyrosine For Phe 202 Length = 291 Back     alignment and structure
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-163
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-160
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-160
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-159
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-158
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-155
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-150
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 1e-83
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 1e-74
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 2e-72
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 2e-70
2e39_A344 Peroxidase; heme protein, coordination geometry of 9e-63
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 2e-62
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 3e-59
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 2e-28
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 2e-18
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
 Score =  456 bits (1176), Expect = e-163
 Identities = 126/304 (41%), Positives = 172/304 (56%), Gaps = 3/304 (0%)

Query: 12  LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
           L+  FY  +CP  E ++    +         A G +R+ FHDCFV GCDASVL+ S+  N
Sbjct: 2   LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61

Query: 72  KAERDSEIN-LSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEV 130
            AE+D+  N  SL   G+EV   AK A+E  CP  VSCADI+A A RD  +LAG   ++V
Sbjct: 62  TAEKDAIPNNPSL--RGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119

Query: 131 PKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEF 190
           P GRRDG +S AS     +P      +Q I+ F +K L+  +MV LSG H+IG +HC  F
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSF 179

Query: 191 MPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIK 250
             R+Y++N    IDPT++  +A  LR +CP +      +    D+ TP V DN YY  ++
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239

Query: 251 KGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDC 310
             LGLL +DQ L+ ++   A VK  A   TA+   F  AM+K+  I V TG  GEIR +C
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299

Query: 311 GSFN 314
              N
Sbjct: 300 SVVN 303
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=1.9e-108  Score=772.70  Aligned_cols=300  Identities=42%  Similarity=0.721  Sum_probs=289.9

Q ss_pred             CCcchhhcCCccHHHHHHHHHHHHHHhCCCchhhhHHHHhhccCCCCCCceEEecCCCCCccccCcccCC-CCCccchHH
Q 039410           12 LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINL-SLPGDGYEV   90 (315)
Q Consensus        12 l~~~~y~~sCp~~e~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~-gL~~~~~~~   90 (315)
                      |+++||++|||++|+|||+.|++++.++|+++|++|||+||||||+||||||||++++++.+|+++++|. +|  +||++
T Consensus         2 L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~~l--rgf~v   79 (304)
T 3hdl_A            2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSL--RGFEV   79 (304)
T ss_dssp             CEETTTTTTCTTHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTTTC--CCHHH
T ss_pred             CccChhhCcCcCHHHHHHHHHHHHHHhCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCcccch--HHHHH
Confidence            8899999999999999999999999999999999999999999999999999999888778999999998 88  99999


Q ss_pred             HHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCh
Q 039410           91 FFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLST  170 (315)
Q Consensus        91 i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~  170 (315)
                      |+.||++||+.||++|||||||+||||+||+++|||.|+|++||+|++++...+++++||+|+.++++|++.|++|||++
T Consensus        80 id~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~  159 (304)
T 3hdl_A           80 ITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTA  159 (304)
T ss_dssp             HHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999999999999999999887777889999999999999999999999


Q ss_pred             hhhHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCC--CccccccCCCCcceechHHHHh
Q 039410          171 LDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLD--PTVVALNDVSTPFVFDNFYYKN  248 (315)
Q Consensus       171 ~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~--~~~~~~lD~~tp~~fDn~Yy~~  248 (315)
                      +||||||||||||++||.+|.+|+|||+|++.+||+||+.|++.|+..||.  .++  +.+.++||+.||.+|||+||++
T Consensus       160 ~d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~--~~~~~~~~~~~lD~~TP~~FDN~Yy~n  237 (304)
T 3hdl_A          160 DEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPA--NSTRFTPITVSLDIITPSVLDNMYYTG  237 (304)
T ss_dssp             HHHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCT--TCCTTSCCEEESCSSSTTSCSTHHHHH
T ss_pred             HHhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCC--CCCCCCccccCCCCCCcccccHHHHHH
Confidence            999999999999999999999999999999889999999999999999997  344  5667899999999999999999


Q ss_pred             hhcCcccchhhHHhhcChhHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCC
Q 039410          249 IKKGLGLLATDQMLLLDSRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFNG  315 (315)
Q Consensus       249 l~~~~g~L~sD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~~~n~  315 (315)
                      |++++|||+|||+|+.|++|+++|++||.||++|+++|++||+||++|||+||++|||||+|++||+
T Consensus       238 L~~~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N~  304 (304)
T 3hdl_A          238 VQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVNS  304 (304)
T ss_dssp             HHTTCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC-
T ss_pred             HHhCcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999995
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-120
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-118
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 1e-110
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 1e-109
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-109
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-107
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 2e-65
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 2e-62
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 1e-59
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-45
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 2e-44
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 3e-43
d1u2ka_292 a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholder 9e-07
d1itka1406 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Arch 1e-06
d1mwva1406 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burk 3e-06
d1ub2a2294 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Syn 7e-06
d1itka2308 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Arc 2e-05
d1mwva2308 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Bur 3e-05
d1ub2a1406 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Syne 7e-05
d2ccaa1410 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Myco 9e-05
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  344 bits (884), Expect = e-120
 Identities = 126/306 (41%), Positives = 176/306 (57%), Gaps = 5/306 (1%)

Query: 12  LKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTN 71
           L   FY++TCPN+  I++ V        P   A  +R+ FHDCFV+GCD SVL+ ++ T 
Sbjct: 2   LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61

Query: 72  KAERDSEINLSLPGDGYEVFFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVP 131
           ++E+D+  N++    G +V    K A+E  CP  VSCADI+AIA      L GGP W VP
Sbjct: 62  ESEQDALPNINS-IRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120

Query: 132 KGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLSTLDMVALSGGHTIGFSHCKEFM 191
            GRRD L +  +    NLP     ++Q  + F  +GL+TLD+V LSGGHT G + C  F+
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180

Query: 192 PRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIKK 251
            R+Y+++ T + DPT+N  +   LR  CP++   D       D+STP  FDN YY N+ +
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTN--LDLSTPDQFDNRYYSNLLQ 238

Query: 252 GLGLLATDQMLLLD--SRTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRD 309
             GLL +DQ L     + T   V   +  +  FF +F V+MIK+ NIGV TG +GEIR  
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298

Query: 310 CGSFNG 315
           C   NG
Sbjct: 299 CNFVNG 304
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 292 Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 406 Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 406 Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Length = 294 Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 308 Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 308 Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Length = 406 Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Length = 410 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=1.3e-103  Score=740.75  Aligned_cols=302  Identities=41%  Similarity=0.721  Sum_probs=291.9

Q ss_pred             CCCcchhhcCCccHHHHHHHHHHHHHHhCCCchhhhHHHHhhccCCCCCCceEEecCCCCCccccCcccCCCCCccchHH
Q 039410           11 RLKHDFYKKTCPNVEKIIYNVASQKLLEAPVTAAGALRIFFHDCFVEGCDASVLIASSKTNKAERDSEINLSLPGDGYEV   90 (315)
Q Consensus        11 ~l~~~~y~~sCp~~e~~Vr~~v~~~~~~~~~~a~~llRL~FHDc~~~GcDgSill~~~~~~~~E~~~~~N~gL~~~~~~~   90 (315)
                      ||+.+||++|||++|+|||++|++.+.+||+++|++|||+||||||+||||||||++++++.+|+++++|.++ .+||++
T Consensus         1 qL~~~~Y~~sCp~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~~-~~g~~~   79 (304)
T d1fhfa_           1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINS-IRGLDV   79 (304)
T ss_dssp             CCBTTTTTTTSTTHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTTT-CCCHHH
T ss_pred             CCCCccccccCcCHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCccccc-chhHHH
Confidence            8999999999999999999999999999999999999999999999999999999998888899999999875 489999


Q ss_pred             HHHHHHHHHhhCCCCCcHHHHHHHHhHhHHhhcCCCccccCCCCCCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCh
Q 039410           91 FFRAKRALELQCPGIVSCADIMAIATRDLVHLAGGPRWEVPKGRRDGLISKASRVEGNLPHVNQTISQTISLFKSKGLST  170 (315)
Q Consensus        91 i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~  170 (315)
                      |+.||+.||+.||++|||||||+||||+||+++|||.|+|++||+|+.+|+..++..+||.|..++++++..|+++|||.
T Consensus        80 id~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~  159 (304)
T d1fhfa_          80 VNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNT  159 (304)
T ss_dssp             HHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999999999999999999887777889999999999999999999999


Q ss_pred             hhhHhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHHHhccCCCCCCCCCccccccCCCCcceechHHHHhhh
Q 039410          171 LDMVALSGGHTIGFSHCKEFMPRIYSYNKTHDIDPTMNQDFARSLRGSCPKSKKLDPTVVALNDVSTPFVFDNFYYKNIK  250 (315)
Q Consensus       171 ~e~VaL~GaHtiG~~hc~~f~~Rl~nf~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~tp~~fDn~Yy~~l~  250 (315)
                      +|||||+||||||++||.+|..|+|+|.+++.+||.+++.|+..|+..||.  ++...+.+.+|..||.+|||+||++++
T Consensus       160 ~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~--~~~~~~~~~~d~~tp~~fDn~Yy~~l~  237 (304)
T d1fhfa_         160 LDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQ--NATGDNLTNLDLSTPDQFDNRYYSNLL  237 (304)
T ss_dssp             HHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCS--SCSSCCEEESCSSSTTSCSTHHHHHHH
T ss_pred             HHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCC--CCCCCcccccCCCCCCccccHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998  556667788999999999999999999


Q ss_pred             cCcccchhhHHhhcCh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCC
Q 039410          251 KGLGLLATDQMLLLDS--RTRAYVKRMADAKTAFFKHFVVAMIKLSNIGVKTGKDGEIRRDCGSFNG  315 (315)
Q Consensus       251 ~~~g~L~sD~~L~~d~--~t~~~V~~yA~d~~~F~~~Fa~A~~Km~~lgv~tg~~GeiR~~C~~~n~  315 (315)
                      .++|+|+|||+|+.|+  +|+++|++||.||++|+++|++||+||++|||+||.+|||||+|+++|+
T Consensus       238 ~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         238 QLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             TTCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCCC
T ss_pred             hcCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcCC
Confidence            9999999999999996  7999999999999999999999999999999999999999999999997
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure