Citrus Sinensis ID: 039421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGSW
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcHHHHHHHccccccccccccccccEEEEEEcccHccccEEEEEEcHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGIKMQDMVLHAKQIIRRRLssnnkqqqfssyqtstasdvpkghFAIYVgqedkkkkrfvvpisylkhPLFQALLSQAEEefgfdyrmhgitipcgedefLNLTSRLNYGSW
Flexible Loop (DISEMBL)
MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSsyqtstasdvpkGHFAIyvgqedkkkKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTsrlnygsw
Low Complexity Region (SEG)
MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGSW
Disordered region (IsUnstruct)
******************************************GHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRL*****
Disordered Region (DISOPRED)
*G*****MVLHAKQI****************************HFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN****
Disordered Region (DISEMBL)
MGIKMQDMVLHAKQIIRRRLS****************SDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGSW
Disordered Region (DISPRO)
****MQDMVLHAKQIIRRRLSSNNKQQQ*********SDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGSW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P33079	93	Auxin-induced protein 10A	no	no	0.678	0.817	0.597	4e-21
P33081	82	Auxin-induced protein 15A	no	no	0.651	0.890	0.605	2e-20
P33080	92	Auxin-induced protein X10	no	no	0.776	0.945	0.511	3e-20
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.741	0.902	0.516	7e-20
P33082	82	Auxin-induced protein X15	no	no	0.651	0.890	0.552	6e-19
P33083	90	Auxin-induced protein 6B	no	no	0.723	0.9	0.541	4e-18

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 6/82 (7%)

Query: 30  SSYQTSTAS---DVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDY 86
           S Y T  AS   DVPKG+ A+YVG    K +RF +P+SYL  P FQ LLSQAEEEFG+D+
Sbjct: 13  SFYTTQAASKRVDVPKGYAAVYVGD---KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDH 69

Query: 87  RMHGITIPCGEDEFLNLTSRLN 108
            M G+TIPC E+EFLN+T+ LN
Sbjct: 70  PMGGLTIPCKEEEFLNVTAHLN 91

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 3/76 (3%)

Query: 33  QTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGIT 92
           + S A+D PKG+ A+YVG+   K KRFV+P+SYL  P FQ LLSQAEEEFG+D+ M G+T
Sbjct: 10  KASKAADAPKGYLAVYVGE---KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLT 66

Query: 93  IPCGEDEFLNLTSRLN 108
           IPC ED F  +TS LN
Sbjct: 67  IPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 3/90 (3%)

Query: 19  RLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQA 78
           RL    K    ++  +S + +VPKG+  +YVG    K +RF++P+SYL  P FQ LL+QA
Sbjct: 4   RLPGIRKTSIAANQASSKSVEVPKGYLVVYVGD---KMRRFLIPVSYLNQPSFQDLLNQA 60

Query: 79  EEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           EEEFG+D+ M G+TIPC EDEFL +TS LN
Sbjct: 61  EEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 10/93 (10%)

Query: 16  IRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALL 75
           IR+ LS+ N+        +S   D PKG+ A+YVG+     KRFV+P+S+L  PLFQ LL
Sbjct: 8   IRKTLSARNEA-------SSKVLDAPKGYLAVYVGE---NMKRFVIPVSHLNQPLFQDLL 57

Query: 76  SQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           SQAEEEFG+D+ M G+TIPC ED F ++TS L+
Sbjct: 58  SQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLS 90

Vigna radiata var. radiata (taxid: 3916)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 3/76 (3%)

Query: 33  QTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGIT 92
           + S A D PKG+ A+YVG+   K KRFV+P+SY+  P FQ LL+QAEEEFG+D+ M G+T
Sbjct: 10  KASNAVDAPKGYLAVYVGE---KMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLT 66

Query: 93  IPCGEDEFLNLTSRLN 108
           IPC E+ F  +T  LN
Sbjct: 67  IPCSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 4/85 (4%)

Query: 25  KQQQFSSYQTST-ASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFG 83
           ++  FS+ Q S+ A DV KG+ A+YVG+   K +RFV+P+SYL  P FQ LLSQAEEEFG
Sbjct: 9   RKASFSANQASSKAVDVEKGYLAVYVGE---KMRRFVIPVSYLNKPSFQDLLSQAEEEFG 65

Query: 84  FDYRMHGITIPCGEDEFLNLTSRLN 108
           + +   G+TIPC ED F ++TS LN
Sbjct: 66  YHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
224103265	107	SAUR family protein [Populus trichocarpa	0.910	0.953	0.638	3e-32
449525547	113	PREDICTED: auxin-induced protein 10A5-li	0.964	0.955	0.568	3e-30
449454173	113	PREDICTED: auxin-induced protein X10A-li	0.973	0.964	0.554	4e-30
449454327	100	PREDICTED: auxin-induced protein X10A-li	0.875	0.98	0.564	1e-24
388522687	101	unknown [Lotus japonicus]	0.839	0.930	0.558	1e-24
225430953	103	PREDICTED: auxin-induced protein X10A-li	0.901	0.980	0.537	2e-24
225430959	103	PREDICTED: auxin-induced protein X10A [V	0.901	0.980	0.546	2e-24
225427870	100	PREDICTED: indole-3-acetic acid-induced	0.821	0.92	0.57	7e-24
225430947	97	PREDICTED: auxin-induced protein 15A [Vi	0.848	0.979	0.518	2e-23
225430957	103	PREDICTED: auxin-induced protein 10A5 [V	0.901	0.980	0.546	2e-23

>gi|224103265|ref|XP_002312989.1| SAUR family protein [Populus trichocarpa] gi|222849397|gb|EEE86944.1| SAUR family protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 84/105 (80%), Gaps = 3/105 (2%)

Query: 4   KMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPI 63
           ++++M LH K  IRR  + N+ Q    S++ ST  DVPKGHFAIYVG+E+K++KRFV+P+
Sbjct: 5   RLKEMFLHVKNKIRRTSTLNHHQL---SHKRSTRLDVPKGHFAIYVGEEEKERKRFVIPV 61

Query: 64  SYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           SYLKHPLFQ LLSQAEEEFGFD++M G+TIPC EDEF  LTS LN
Sbjct: 62  SYLKHPLFQILLSQAEEEFGFDHQMGGLTIPCAEDEFTVLTSHLN 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525547|ref|XP_004169778.1| PREDICTED: auxin-induced protein 10A5-like [Cucumis sativus]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFS-SYQTSTASDVPKGHFAIYVGQEDKKKKRF 59
           MGI++ +++LHAKQI  R  + +++Q  +  +   S+ SDVPKGHF +YVG+E++ +KRF
Sbjct: 1   MGIRLPEIILHAKQITHRAAAPSHRQVGYEVTKHRSSFSDVPKGHFVVYVGEEEEDRKRF 60

Query: 60  VVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           VVP+SYLK+PLFQ LLS+A +EFGFD    GITIPC +D+FL LTSRLN
Sbjct: 61  VVPLSYLKNPLFQELLSKAADEFGFDNHFGGITIPCAQDQFLGLTSRLN 109

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454173|ref|XP_004144830.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 85/110 (77%), Gaps = 1/110 (0%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFS-SYQTSTASDVPKGHFAIYVGQEDKKKKRF 59
           MGI++ +++LHAKQI  R  + +++Q  +  +   S+ SDVPKGHF +YVG+E++ +KRF
Sbjct: 1   MGIRLPEIILHAKQITHRAAAPSHRQVGYEVTKHRSSFSDVPKGHFVVYVGEEEEDRKRF 60

Query: 60  VVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNY 109
           VVP+SYLK+PLFQ LLS+A +EFGFD    GITIPC +D+FL LTSR N+
Sbjct: 61  VVPLSYLKNPLFQELLSKAADEFGFDNHFGGITIPCAQDQFLGLTSRFNF 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454327|ref|XP_004144907.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] gi|449507036|ref|XP_004162916.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 74/108 (68%), Gaps = 10/108 (9%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
           MG ++  +VL AK  +RR  SS N+        T  + DVPKG F +YVG+E  +KKRFV
Sbjct: 1   MGFRLPSIVL-AKPSLRRSTSSGNRA-------TPKSLDVPKGCFTVYVGEE--QKKRFV 50

Query: 61  VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           + +SYL HPLFQ LLSQAEEEFG+DY M GITIPC ED F+NL   LN
Sbjct: 51  ISLSYLNHPLFQDLLSQAEEEFGYDYAMGGITIPCNEDTFVNLIHSLN 98

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522687|gb|AFK49405.1| unknown [Lotus japonicus]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 17/111 (15%)

Query: 1   MGIKMQDMVLHAKQIIR----RRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKK 56
           MGI++  M+ HAKQI +      L S  KQ           SDVPKGH A+YVG  + +K
Sbjct: 1   MGIRLPFMIAHAKQIFKFTSQHHLQSGTKQ-----------SDVPKGHLAVYVG--ELQK 47

Query: 57  KRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRL 107
           KRFVVPISYL HP F ALL++AEEEFGF++ M G+TIPC ED F+NLTS+L
Sbjct: 48  KRFVVPISYLNHPSFLALLNRAEEEFGFNHPMGGLTIPCKEDAFINLTSQL 98

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430953|ref|XP_002271562.1| PREDICTED: auxin-induced protein X10A-like [Vitis vinifera]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 7/108 (6%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
           MG ++  MV HA+QI++ +      Q        +T ++VPKGHFA+YVG+ +KK  RFV
Sbjct: 1   MGFRLPSMV-HARQILKLQSLLTRSQSSI----LATTAEVPKGHFAVYVGEAEKK--RFV 53

Query: 61  VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           VPISYL +P FQ LLS AEEEFGF++ M G+TIPC ED F++LTSRL+
Sbjct: 54  VPISYLNNPSFQKLLSHAEEEFGFNHPMGGVTIPCNEDAFIDLTSRLH 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430959|ref|XP_002271660.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 7/108 (6%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
           MG +    ++ AKQI++     +  Q   S+    TA++VPKGHFA+YVG+ +KK  RFV
Sbjct: 1   MGFRFPS-IIQAKQILKLHSLLSRGQSSISA----TAAEVPKGHFAVYVGEAEKK--RFV 53

Query: 61  VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           VPISYL +P FQ LLS AEEEFGF++ M G+TIPC ED F+NLTSR N
Sbjct: 54  VPISYLNNPSFQKLLSHAEEEFGFNHPMGGVTIPCKEDAFINLTSRFN 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427870|ref|XP_002272387.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like isoform 1 [Vitis vinifera]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 73/100 (73%), Gaps = 8/100 (8%)

Query: 9   VLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKH 68
           + HAKQ ++R LSS        +   S  ++VPKGHFA+YVG+   +KKRFV+PISYL H
Sbjct: 7   ITHAKQKLQRTLSSR------ITGAISATANVPKGHFAVYVGES--QKKRFVIPISYLNH 58

Query: 69  PLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           PLFQ LL +AEEEFGFD+ M G+TIPC ED F++LTS L+
Sbjct: 59  PLFQDLLHRAEEEFGFDHPMGGLTIPCSEDYFISLTSHLS 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430947|ref|XP_002271427.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 75/108 (69%), Gaps = 13/108 (12%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
           MGI++  ++ +AKQI++             S    + SDVPKGHFA+YVG  + +KKRFV
Sbjct: 1   MGIRLPSVISNAKQILK-----------LQSVHIRSQSDVPKGHFAVYVG--EIQKKRFV 47

Query: 61  VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           VPISYL HP FQ LL QAEEEFGF++ M G+TIPC E+ F++L S+L+
Sbjct: 48  VPISYLNHPSFQDLLQQAEEEFGFNHSMGGLTIPCKEETFIDLASQLS 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430957|ref|XP_002271621.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] gi|147839952|emb|CAN70455.1| hypothetical protein VITISV_035059 [Vitis vinifera] gi|297735267|emb|CBI17629.3| unnamed protein product [Vitis vinifera]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 79/108 (73%), Gaps = 7/108 (6%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
           MG +M   +LHAKQI++  L S   + Q S   ++T + VPKGHFA+YVG+ +KK  RFV
Sbjct: 1   MGFRMPS-ILHAKQILK--LQSLLTRSQLS--ISATTAVVPKGHFAVYVGEAEKK--RFV 53

Query: 61  VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
           VPISYL +P FQ  LS +EEEFGF++ M G+TIPC E+ F++LTSRL+
Sbjct: 54  VPISYLNNPSFQKFLSHSEEEFGFNHPMGGVTIPCKEESFIDLTSRLS 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2005542	89	SAUR15 "AT4G38850" [Arabidopsi	0.633	0.797	0.577	2.3e-22
TAIR|locus:2116875	108	AT4G34790 "AT4G34790" [Arabido	0.901	0.935	0.524	4.3e-22
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.928	1.0	0.540	7e-22
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.883	1.0	0.481	4.9e-21
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.633	0.806	0.643	8e-21
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.821	0.938	0.526	1.7e-20
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.75	0.893	0.563	1.7e-20
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.660	0.813	0.618	1.7e-20
TAIR|locus:2116865	106	AT4G34780 "AT4G34780" [Arabido	0.616	0.650	0.637	2.1e-20
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.669	0.833	0.597	2.7e-20

TAIR|locus:2005542 SAUR15 "AT4G38850" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 41/71 (57%), Positives = 56/71 (78%)

Query:    37 ASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCG 96
             +S  P+G  A+YVG+ D+KKKR+VVP+SYL  PLFQ LLS++EEEFG+D+ M G+TIPC 
Sbjct:    18 SSSTPRGFMAVYVGENDQKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHPMGGLTIPCH 77

Query:    97 EDEFLNLTSRL 107
             E  F  +TS++
Sbjct:    78 ESLFFTVTSQI 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS

TAIR|locus:2116875 AT4G34790 "AT4G34790" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/103 (52%), Positives = 70/103 (67%)

Query:     1 MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
             MG+ M+ M+ +AKQI + +   N       S  T+T+  VPKGH A+YVG E  +KKRFV
Sbjct:     1 MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSTTTTTSGLVPKGHVAVYVG-EQMEKKRFV 58

Query:    61 VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNL 103
             VPISYL HPLF+  L++AEEE GF + M G+TIPC E+ FL L
Sbjct:    59 VPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLYL 101

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 60/111 (54%), Positives = 75/111 (67%)

Query:     1 MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
             MGI++  +   AKQ ++R LS+       S   TS  ++VPKGH A+YVG E   +KRFV
Sbjct:     1 MGIQLIGLS-QAKQKLQRSLSARIA----SLLATSGTNNVPKGHVAVYVG-ETYHRKRFV 54

Query:    61 VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGS 111
             +PISYL HPLFQ LL+ AEEEFGFD+ M G+TIPC ED F  L S L+ GS
Sbjct:    55 IPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFTALASILS-GS 104

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 52/108 (48%), Positives = 75/108 (69%)

Query:     1 MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
             M I++  ++  +KQI+R+        +  SS  +S++ DVPKG+ A+YVG+++ K  RFV
Sbjct:     1 MAIRIPRVLQSSKQILRQA-------KLLSSSSSSSSLDVPKGYLAVYVGEQNMK--RFV 51

Query:    61 VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRLN 108
             VP+SYL  P FQ LL +AEEEFGFD+ M G+TIPC E+ F++L SR N
Sbjct:    52 VPVSYLDQPSFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 47/73 (64%), Positives = 59/73 (80%)

Query:    35 STASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIP 94
             STAS  PKG  A+YVG+   +KKR++VP+SYL  P FQALLS++EEEFGFD+ M G+TIP
Sbjct:    17 STASAAPKGFLAVYVGES--QKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIP 74

Query:    95 CGEDEFLNLTSRL 107
             C ED F+N+TSRL
Sbjct:    75 CPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 49/93 (52%), Positives = 65/93 (69%)

Query:    19 RLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQA 78
             R+  ++KQ   S   +S    +PKGH A+YVG E  +K+RFVVP++YL HP FQ LL +A
Sbjct:     7 RVLQSSKQLLKSLSHSSNNVAIPKGHLAVYVG-EMMQKRRFVVPVTYLSHPCFQKLLRKA 65

Query:    79 EEEFGFDYRMHGITIPCGEDEFLNLTSRLNYGS 111
             EEEFGFD+ M G+TIPC E  F++L SRL+  S
Sbjct:    66 EEEFGFDHPMGGLTIPCTEQIFIDLASRLSTSS 98

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 53/94 (56%), Positives = 66/94 (70%)

Query:    19 RLSS--NNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLS 76
             RLS   N+KQ Q         S VPKGH A+YVG+E + KKRFVVPISYL HP FQ LLS
Sbjct:     4 RLSRVINSKQSQ------KQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLS 57

Query:    77 QAEEEFGFDYRMHGITIPCGEDEFLNLTSRLNYG 110
             +AEEEFGF++ + G+TIPC E+ F+ L +  +YG
Sbjct:    58 RAEEEFGFNHPIGGLTIPCREETFVGLLN--SYG 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/76 (61%), Positives = 59/76 (77%)

Query:    31 SYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHG 90
             S  T+ AS  PKG  A+YVG+   +KKR++VPISYL  P FQALLS++EEEFGFD+ M G
Sbjct:    15 SRSTTAASAAPKGFLAVYVGES--QKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGG 72

Query:    91 ITIPCGEDEFLNLTSR 106
             +TIPC ED F+N+TSR
Sbjct:    73 LTIPCPEDTFINVTSR 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116865 AT4G34780 "AT4G34780" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 44/69 (63%), Positives = 58/69 (84%)

Query:    39 DVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGED 98
             +V KGHFA+YVG+++ + KRFVVPISYL HPLFQALL +AE+EFG D++   +TIPC +D
Sbjct:    27 NVRKGHFAVYVGEDEMETKRFVVPISYLNHPLFQALLRKAEDEFGTDHQRTYLTIPCAKD 86

Query:    99 EFLNLTSRL 107
              FL++TSRL
Sbjct:    87 VFLDITSRL 95

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 46/77 (59%), Positives = 58/77 (75%)

Query:    31 SYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGFDYRMHG 90
             S  T   S  PKG  A+YVG+   +KKR++VP+SYL  P FQALLS++EEEFGFD+ M G
Sbjct:    15 SRSTGAGSAAPKGFLAVYVGES--QKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGG 72

Query:    91 ITIPCGEDEFLNLTSRL 107
             +TIPC ED F+N+TSRL
Sbjct:    73 LTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-39
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-30
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-28
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-25

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  127 bits (320), Expect = 1e-39
 Identities = 49/107 (45%), Positives = 63/107 (58%), Gaps = 9/107 (8%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
           M  +++      K I+      +       S   S+++DVPKGHFA+YVG+E    +RFV
Sbjct: 1   MASRLKKASSAKKWILSAASGRS-----RGSSSKSSSADVPKGHFAVYVGEE---TRRFV 52

Query: 61  VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRL 107
           VPISYL HPLFQ LL +AEEEFGFD    G+TIPC    F +L   L
Sbjct: 53  VPISYLNHPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  104 bits (261), Expect = 1e-30
 Identities = 50/95 (52%), Positives = 66/95 (69%), Gaps = 7/95 (7%)

Query: 13  KQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQ 72
           KQI++R  SS  K+Q +   +     DVPKGHF +YVG+    + R++VPIS+L HP FQ
Sbjct: 16  KQILKR-CSSLGKKQGYD--EDGLPLDVPKGHFPVYVGE---NRSRYIVPISFLTHPEFQ 69

Query: 73  ALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRL 107
           +LL QAEEEFGFD+ M G+TIPC E  F +LTS +
Sbjct: 70  SLLQQAEEEFGFDHDM-GLTIPCEEVVFRSLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 99.8 bits (248), Expect = 1e-28
 Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFV 60
           MG+ M+ M+ +AKQI + +   N       S  T+T+  VPKGH A+YVG E  +KKRFV
Sbjct: 1   MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVG-EQMEKKRFV 58

Query: 61  VPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTS 105
           VPISYL HPLF+  L++AEEE GF + M G+TIPC E+ FL+L +
Sbjct: 59  VPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLIT 103

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 92.1 bits (228), Expect = 1e-25
 Identities = 51/109 (46%), Positives = 73/109 (66%), Gaps = 7/109 (6%)

Query: 1   MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQE-DKKKKRF 59
           MG+    +    KQI++    +N  +       +S++  VPKGH A+YVG++ + +KKRF
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTS-----SSSSDHVPKGHVAVYVGEQIEMEKKRF 55

Query: 60  VVPISYLKHPLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNL-TSRL 107
           VVPIS+L HP F+  LS+AEEEFGF++ M G+TIPC E+ FL+L  SRL
Sbjct: 56  VVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	86.51
PRK02899	197	adaptor protein; Provisional	80.98
PF02100	108	ODC_AZ: Ornithine decarboxylase antizyme; InterPro	80.68

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=2.2e-40  Score=234.00  Aligned_cols=101  Identities=48%  Similarity=0.822  Sum_probs=88.1

Q ss_pred             CCcchhHHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCC-CcceEEEEeccCcCcHHHHHHHHhHH
Q 039421            1 MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQED-KKKKRFVVPISYLKHPLFQALLSQAE   79 (112)
Q Consensus         1 m~~~~~~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~-~~~~RfvVp~~~L~hP~F~~LL~~ae   79 (112)
                      ||++++.|..+.|++|+||+ ++++.+.+    ++++.+|||||||||||+++ .+++||+||++|||||.|++||++||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~----~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~Ae   75 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNS-LANRNRTS----SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAE   75 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHh-hccccccc----ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHH
Confidence            99999999988899999999 66553221    23567899999999999842 34899999999999999999999999


Q ss_pred             HhcCCccCCCcEEecccHHHHHHHHHh
Q 039421           80 EEFGFDYRMHGITIPCGEDEFLNLTSR  106 (112)
Q Consensus        80 EEfG~~~~~G~L~IPC~~~~Fe~vl~~  106 (112)
                      |||||+|++|+|+|||+++.|++++..
T Consensus        76 EEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         76 EEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             HHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            999999767999999999999999864

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.9e-40  Score=232.62  Aligned_cols=99  Identities=52%  Similarity=0.821  Sum_probs=86.4

Q ss_pred             CCcchh----HHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHH
Q 039421            1 MGIKMQ----DMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLS   76 (112)
Q Consensus         1 m~~~~~----~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~   76 (112)
                      |||+..    .++ ++|++|+||.|.++..   ++.+...+.+||+||||||||++   ++||+||++|||||+|++||+
T Consensus         1 m~~~k~~ki~~~~-~~kq~l~r~~s~~~~~---~~~~~~~~~~vpkG~~aVyVG~~---~~RfvVp~~~L~hP~F~~LL~   73 (104)
T PLN03090          1 MAIKKSNKLTQTA-MLKQILKRCSSLGKKQ---GYDEDGLPLDVPKGHFPVYVGEN---RSRYIVPISFLTHPEFQSLLQ   73 (104)
T ss_pred             CCcccccchhHHH-HHHHHHHHHHHhcccC---CcccccCCCCCCCCcEEEEECCC---CEEEEEEHHHcCCHHHHHHHH
Confidence            776644    577 9999999999998543   22223467899999999999996   899999999999999999999


Q ss_pred             hHHHhcCCccCCCcEEecccHHHHHHHHHhh
Q 039421           77 QAEEEFGFDYRMHGITIPCGEDEFLNLTSRL  107 (112)
Q Consensus        77 ~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l  107 (112)
                      +|||||||++ +|+|+|||+++.|++++|+|
T Consensus        74 ~aeeEfGf~~-~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         74 QAEEEFGFDH-DMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             HHHHHhCCCC-CCcEEEeCCHHHHHHHHHHh
Confidence            9999999996 68999999999999999998

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=3.3e-37  Score=218.72  Aligned_cols=102  Identities=50%  Similarity=0.828  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHHhcCC
Q 039421            5 MQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEEEFGF   84 (112)
Q Consensus         5 ~~~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~   84 (112)
                      +.+++..+|+|.|--+-.++......|.+++++.+|||||+|||||++ ++++||+||++|||||+|++||++|||||||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~-~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf   82 (108)
T PLN03219          4 MRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQ-MEKKRFVVPISYLNHPLFREFLNRAEEECGF   82 (108)
T ss_pred             HHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCC-CCceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            356777999999855544434334444445667899999999999983 4599999999999999999999999999999


Q ss_pred             ccCCCcEEecccHHHHHHHHHhh
Q 039421           85 DYRMHGITIPCGEDEFLNLTSRL  107 (112)
Q Consensus        85 ~~~~G~L~IPC~~~~Fe~vl~~l  107 (112)
                      +|++|+|+|||+++.|+++++.-
T Consensus        83 ~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         83 HHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCEEEeCCHHHHHHHHHhh
Confidence            97779999999999999999863

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=5.9e-36  Score=209.25  Aligned_cols=100  Identities=52%  Similarity=0.816  Sum_probs=77.3

Q ss_pred             CCcchhHHHHHHHHHHHhhhhccccccccccccccCCCCCCCCeEEEEEccCCCcceEEEEeccCcCcHHHHHHHHhHHH
Q 039421            1 MGIKMQDMVLHAKQIIRRRLSSNNKQQQFSSYQTSTASDVPKGHFAIYVGQEDKKKKRFVVPISYLKHPLFQALLSQAEE   80 (112)
Q Consensus         1 m~~~~~~~~~~~k~~l~r~~s~~~~~~~~ss~~~~~~~~vpkG~~~VyVG~~~~~~~RfvVp~~~L~hP~F~~LL~~aeE   80 (112)
                      |..++..+. .+++..++..+....   .++..+++..++|+||||||||++   ++||+||++|||||+|++||++|||
T Consensus         1 M~~~~k~~~-~~~k~~~~~~~~~~~---~~~~~~~~~~~vp~G~~~VyVG~~---~~Rfvvp~~~L~hp~f~~LL~~aee   73 (100)
T PF02519_consen    1 MASRLKSLA-SAKKWQSRARSKSSS---SSSSRSSSESDVPKGHFAVYVGEE---RRRFVVPVSYLNHPLFQELLEQAEE   73 (100)
T ss_pred             CccHHHHHH-HHHhhhhhhhhcccc---cccccccccCCCCCCeEEEEeCcc---ceEEEechHHcCchhHHHHHHHHhh
Confidence            566666666 444433333322111   111122334889999999999996   8999999999999999999999999


Q ss_pred             hcCCccCCCcEEecccHHHHHHHHHhhc
Q 039421           81 EFGFDYRMHGITIPCGEDEFLNLTSRLN  108 (112)
Q Consensus        81 EfG~~~~~G~L~IPC~~~~Fe~vl~~l~  108 (112)
                      ||||++ +|+|+|||+++.|++++|+|+
T Consensus        74 EfG~~~-~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   74 EFGFDQ-DGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             hcCcCC-CCcEEeeCCHHHHHHHHHHhC
Confidence            999996 799999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=86.51  E-value=0.78  Score=30.14  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             EEEEccCCCcceEEEEeccCcC-cH--HHHHHHHhH-HHhcCCccCCCcEEecccHHHHHHHHHhhcc
Q 039421           46 AIYVGQEDKKKKRFVVPISYLK-HP--LFQALLSQA-EEEFGFDYRMHGITIPCGEDEFLNLTSRLNY  109 (112)
Q Consensus        46 ~VyVG~~~~~~~RfvVp~~~L~-hP--~F~~LL~~a-eEEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~  109 (112)
                      .+-||.     ++|.++.+.|. +|  .|..|+... ...+.  ..+|.+-|-++...|++|+..+..
T Consensus         2 ~lNVGG-----~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~--~~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    2 RLNVGG-----TIFETSRSTLTRYPDSLLARLFSGERSDDYD--DDDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEEETT-----EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEE--TTTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEEECC-----EEEEEcHHHHhhCCCChhhhHHhhccccccC--CccceEEeccChhhhhHHHHHHhh
Confidence            345666     59999999887 54  688888865 22222  246999999999999999999887

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=80.98  E-value=1.5  Score=33.82  Aligned_cols=24  Identities=29%  Similarity=0.653  Sum_probs=20.4

Q ss_pred             HHHHHHHHhHHHhcCCccCCCcEEe
Q 039421           69 PLFQALLSQAEEEFGFDYRMHGITI   93 (112)
Q Consensus        69 P~F~~LL~~aeEEfG~~~~~G~L~I   93 (112)
                      -+|.++|++|..|+||. .+|||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~-~~~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFE-ADGPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcc-cCCeEEE
Confidence            35888899999999998 5799985

>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis

Probab=80.68  E-value=2.5  Score=29.74  Aligned_cols=50  Identities=30%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             ceEEE-EeccCcCc---HHHHHHHHhHHHhcCCccCCCcEEecccHHHHHHHHHhh
Q 039421           56 KKRFV-VPISYLKH---PLFQALLSQAEEEFGFDYRMHGITIPCGEDEFLNLTSRL  107 (112)
Q Consensus        56 ~~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~Fe~vl~~l  107 (112)
                      +.=|+ +|-..+.+   ..|.+||+.|||.++.++  -.+.++=+-.....++..+
T Consensus        24 ~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l   77 (108)
T PF02100_consen   24 RTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL   77 (108)
T ss_dssp             TEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred             CEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence            56666 56555444   459999999999999874  5677776655555555443

ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00