Citrus Sinensis ID: 039430

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
HFELKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDDEKTSQSFIESCISKS
cccccEEEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHccccccccEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccEEEEEEEcccccccccccccccccccEEEEccccccccHHHHHHHHccc
cccEEEEEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEccHHHHHHcccccccccEEcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHcHHHcccccccccHHHHHEcHHcccHHHHHHHHEHEEccccccccHHHHHHHHHHHHHHHHHHHHHcccHEEEEccccccccccEEEEEEEcccccccccccHHHHHHHccEEEEcccccccccHHHHHHHccc
HFELKIWICVSVDFGERQIMTKIINSitgenqsnldpdrLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLggangskiLVTTRSRKVASImgtkggstgynlqglpfedCLSLFMKCAckeerdkhpNLIKIAKEIVKKCGGILLAVKTLGsllydstdEHFWEYVRDNEIWRLeqkesgilpalrlsydqlpphlkQCVAYCSIfpkdfefdsysLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSdlgrvrtiffstddektSQSFIESCISKS
hfelkiwicvsvdfgerQIMTKIInsitgenqsnldpdRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLllggangskilvttrsrkvasimgtkggstgynlQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFfstddektsqsfiescisks
HFELKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDDEKTSQSFIESCISKS
**ELKIWICVSVDFGERQIMTKIINSITG**********LQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFS******************
HFELKIWICVSVDFGERQIMTKIINSI*************QKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDDEKTSQSFIESCISK*
HFELKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTD****************
HFELKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDDEKTSQSFIES*****
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HFELKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLMHDLALLVAKDEFLVVNSDCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDDEKTSQSFIESCISKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
Q7XA39 988 Putative disease resistan N/A no 0.759 0.236 0.457 7e-60
Q7XA40 992 Putative disease resistan N/A no 0.756 0.234 0.444 9e-59
Q7XBQ9 970 Disease resistance protei N/A no 0.759 0.241 0.451 1e-58
Q7XA42 979 Putative disease resistan N/A no 0.756 0.237 0.440 5e-58
Q9LRR4 1054 Putative disease resistan yes no 0.701 0.204 0.418 4e-36
Q9LRR5 1424 Putative disease resistan no no 0.837 0.181 0.309 3e-31
Q38834 852 Disease resistance RPP13- no no 0.668 0.241 0.342 5e-25
Q9M667 835 Disease resistance protei no no 0.707 0.261 0.327 1e-21
Q9FJB5 901 Disease resistance RPP8-l no no 0.782 0.267 0.270 1e-19
Q39214 926 Disease resistance protei no no 0.717 0.238 0.293 4e-19
>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 Back     alignment and function desciption
 Score =  231 bits (588), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 128/280 (45%), Positives = 161/280 (57%), Gaps = 46/280 (16%)

Query: 1   HFELKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYV 60
           HF  KIW+CVS DF E++++  II +I   +    D    QK L++  NGKRYLLV+D V
Sbjct: 206 HFNPKIWVCVSDDFDEKRLIKTIIGNIERSSPHVEDLASFQKKLQELLNGKRYLLVLDDV 265

Query: 61  WNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLF 120
           WN+DLE W K +++L  GA G+ IL TTR  KV SIMGT      Y+L  L   D L LF
Sbjct: 266 WNDDLEKWAKLRAVLTVGARGASILATTRLEKVGSIMGT---LQPYHLSNLSPHDSLLLF 322

Query: 121 MKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRL 180
           M+ A  ++++ +PNL+ I KEIVKKCGG+ LA KTLG LL    +E  WE+VRDNEIW L
Sbjct: 323 MQRAFGQQKEANPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSL 382

Query: 181 EQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDF------------------------ 216
            Q ES ILPALRLSY  LP  L+QC AYC++FPKD                         
Sbjct: 383 PQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLE 442

Query: 217 -------------------EFDSYSLLFYFKMHDLMHDLA 237
                              E ++ S   YFK+HDL+HDLA
Sbjct: 443 LEDVGNEVWNELYLRSFFQEIEAKSGNTYFKIHDLIHDLA 482
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)
>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 Back     alignment and function description
>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 Back     alignment and function description
>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 Back     alignment and function description
>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2 Back     alignment and function description
>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2 Back     alignment and function description
>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1 Back     alignment and function description
>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
255577491 860 leucine-rich repeat containing protein, 0.970 0.347 0.455 2e-73
224120592 836 nbs-lrr resistance protein [Populus tric 0.993 0.366 0.416 2e-71
359491491 845 PREDICTED: disease resistance protein RG 0.980 0.357 0.424 2e-71
297734285 708 unnamed protein product [Vitis vinifera] 0.980 0.426 0.424 4e-71
225456045 851 PREDICTED: putative disease resistance p 0.980 0.354 0.418 1e-70
225456043 848 PREDICTED: putative disease resistance p 0.980 0.356 0.421 3e-69
225456092 849 PREDICTED: putative disease resistance p 0.980 0.355 0.416 6e-69
356516523 876 PREDICTED: putative disease resistance p 0.909 0.319 0.456 1e-68
351725809 909 NBS-LRR disease resistance protein [Glyc 0.974 0.330 0.445 5e-68
356570458 857 PREDICTED: disease resistance protein RG 0.974 0.350 0.437 7e-68
>gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/356 (45%), Positives = 214/356 (60%), Gaps = 57/356 (16%)

Query: 1   HFELKIWICVSVDFGERQIMTKII----NSIT-GENQSNLDPDRLQKVLRDSFNGKRYLL 55
           +FELK+WICVS DF  +++M KII    NS T GEN S+L+ D+LQ+V+R+  + K+Y L
Sbjct: 221 YFELKMWICVSDDFNIKKLMEKIIKSAINSTTFGENYSSLELDQLQRVMREQISEKKYFL 280

Query: 56  VMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFED 115
           V+D VWN+D   W + K LL G A GSKI+VTTRS+ VASI+GT   +  YNL GLP + 
Sbjct: 281 VLDDVWNDDRTKWNELKELLRGCAYGSKIMVTTRSKVVASIVGT---APAYNLSGLPDDK 337

Query: 116 CLSLFMKCACKEERDK-HPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRD 174
           CLSLF++CA  E ++K +PNL+KI  EIVKKCGG+ LAV+T+G+ L+  TDE  W  V++
Sbjct: 338 CLSLFLRCAFNEGQEKLYPNLVKIGSEIVKKCGGVPLAVRTVGTQLFLKTDEADWNLVKE 397

Query: 175 NEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLL---------- 224
           ++IW L+Q  + ILPALR+SY QLP +LKQC A CS+FPKD+EF+S  L+          
Sbjct: 398 SDIWELDQNPNDILPALRISYQQLPSYLKQCFASCSVFPKDYEFNSLKLIQFWMAHGLLQ 457

Query: 225 ----------------------------------FYFKMHDLMHDLALLVAKDEFLVVNS 250
                                             F FKMHDL+HDLA  VA+ E L+  S
Sbjct: 458 SPDQVQLPEYLGLKYLKELFSRCFFQDIEDCSFYFVFKMHDLVHDLAQSVAQRESLIPKS 517

Query: 251 DCQSIPKRVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDDEKTSQSFIESCIS 306
                 KRVRHL+F        D   L  DL  V+TI  +      S+S  + CIS
Sbjct: 518 GRHYSCKRVRHLTFFDPEVLSKDPRKLFHDLDHVQTILIAG----VSKSLAQVCIS 569

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224120592|ref|XP_002318368.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859041|gb|EEE96588.1| nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491491|ref|XP_003634282.1| PREDICTED: disease resistance protein RGA2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734285|emb|CBI15532.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456045|ref|XP_002277526.1| PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456043|ref|XP_002277498.1| PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456092|ref|XP_002278041.1| PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516523|ref|XP_003526943.1| PREDICTED: putative disease resistance protein RGA3-like [Glycine max] Back     alignment and taxonomy information
>gi|351725809|ref|NP_001238129.1| NBS-LRR disease resistance protein [Glycine max] gi|212717155|gb|ACJ37419.1| NBS-LRR disease resistance protein [Glycine max] Back     alignment and taxonomy information
>gi|356570458|ref|XP_003553404.1| PREDICTED: disease resistance protein RGA2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
TAIR|locus:2091672 1054 AT3G14470 [Arabidopsis thalian 0.720 0.210 0.421 8.6e-38
UNIPROTKB|O48647 1802 O48647 "XA1" [Oryza sativa (ta 0.711 0.121 0.336 2.7e-35
TAIR|locus:2091662 1424 AT3G14460 [Arabidopsis thalian 0.737 0.159 0.334 9.5e-33
TAIR|locus:2078012 852 ZAR1 "HOPZ-ACTIVATED RESISTANC 0.685 0.247 0.340 1.9e-27
TAIR|locus:504956483 847 AT3G46730 [Arabidopsis thalian 0.701 0.255 0.323 9.5e-26
TAIR|locus:2075170 835 RPP13 "RECOGNITION OF PERONOSP 0.704 0.259 0.329 1.1e-25
TAIR|locus:2077572 926 RPM1 "RESISTANCE TO P. SYRINGA 0.714 0.237 0.296 1.8e-23
TAIR|locus:2176486 908 RPP8 "RECOGNITION OF PERONOSPO 0.720 0.244 0.304 9.9e-23
TAIR|locus:2011982 857 AT1G50180 [Arabidopsis thalian 0.717 0.257 0.311 1e-22
TAIR|locus:2036214 851 AT1G15890 [Arabidopsis thalian 0.711 0.257 0.296 6.8e-22
TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 387 (141.3 bits), Expect = 8.6e-38, Sum P(2) = 8.6e-38
 Identities = 97/230 (42%), Positives = 128/230 (55%)

Query:     1 HFELKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKR--YLLVMD 58
             +F  K+W  VS +F   +I  K+  S+T       D D LQ  L++   G    +LLV+D
Sbjct:   225 YFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLD 284

Query:    59 YVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLS 118
              +WNE+   W   +   +  A GS+ILVTTRS++VASIM        +NLQ L   DC S
Sbjct:   285 DLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRVASIMCAVHV---HNLQPLSDGDCWS 341

Query:   119 LFMKCAC-KEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEI 177
             LFMK     +E   +  +  +A+ IV KC G+ LAVKTLG +L        WE V  + I
Sbjct:   342 LFMKTVFGNQEPCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRI 401

Query:   178 WRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKD--FEFDSYSLLF 225
             W L   +S +LP LR+SY  LP HLK+C AYCSIFPK   FE D   LL+
Sbjct:   402 WDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLW 451
GO:0005576 "extracellular region" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0043531 "ADP binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 7e-52
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information 
 Score =  171 bits (436), Expect = 7e-52
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 8/222 (3%)

Query: 1   HFELKIWICVSVDFGERQIMTKIINSI--TGENQSNLDPDRLQKVLRDSFNGKRYLLVMD 58
           HF+   W+ VS  + E ++   I+  +     +    +   L   ++++   KR+LLV+D
Sbjct: 48  HFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEALLRKRFLLVLD 107

Query: 59  YVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLS 118
            VW +    W K       G NGS+++VTTRS  VA  MG  G S  + ++ L  E+   
Sbjct: 108 DVWEK--NDWDKIGVPFPDGENGSRVIVTTRSESVAGRMG--GTSKPHEVESLEPEESWE 163

Query: 119 LFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIW 178
           LF     ++E    P L ++AKEIV+KC G+ LA+K LG LL   +    WE+V +    
Sbjct: 164 LFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNN 223

Query: 179 RLEQKES--GILPALRLSYDQLPPHLKQCVAYCSIFPKDFEF 218
            L  ++    +L  L LSYD LP HLK+C  Y ++FP+D+  
Sbjct: 224 ELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNI 265

Length = 285

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 100.0
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
PRK04841 903 transcriptional regulator MalT; Provisional 98.88
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 97.96
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 97.67
PF05729166 NACHT: NACHT domain 97.33
PRK00411394 cdc6 cell division control protein 6; Reviewed 97.32
PRK06893229 DNA replication initiation factor; Validated 96.87
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 96.75
TIGR02928365 orc1/cdc6 family replication initiation protein. M 96.6
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.23
COG3903414 Predicted ATPase [General function prediction only 96.06
PRK05564313 DNA polymerase III subunit delta'; Validated 96.01
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 95.93
PRK07471365 DNA polymerase III subunit delta'; Validated 95.53
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 95.44
PRK13342413 recombination factor protein RarA; Reviewed 95.34
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 95.15
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 94.92
PRK09087226 hypothetical protein; Validated 94.51
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 94.22
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 94.15
PRK09112351 DNA polymerase III subunit delta'; Validated 94.07
PF13173128 AAA_14: AAA domain 93.95
PRK08727233 hypothetical protein; Validated 93.46
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 93.4
PRK05707328 DNA polymerase III subunit delta'; Validated 92.7
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 92.65
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 92.47
PRK12402337 replication factor C small subunit 2; Reviewed 92.44
TIGR02903615 spore_lon_C ATP-dependent protease, Lon family. Me 92.42
PLN03025319 replication factor C subunit; Provisional 92.35
PRK00440319 rfc replication factor C small subunit; Reviewed 92.15
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 91.99
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 91.63
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 91.62
PTZ001121164 origin recognition complex 1 protein; Provisional 91.51
PRK08903227 DnaA regulatory inactivator Hda; Validated 91.02
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 90.88
PRK08084235 DNA replication initiation factor; Provisional 90.85
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 90.62
PRK07940394 DNA polymerase III subunit delta'; Validated 90.49
PRK14954 620 DNA polymerase III subunits gamma and tau; Provisi 90.27
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 90.06
PRK14959 624 DNA polymerase III subunits gamma and tau; Provisi 89.72
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 89.56
PRK14087450 dnaA chromosomal replication initiation protein; P 89.48
PRK14971 614 DNA polymerase III subunits gamma and tau; Provisi 89.29
PRK08451 535 DNA polymerase III subunits gamma and tau; Validat 88.93
cd01128249 rho_factor Transcription termination factor rho is 88.9
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 88.74
PRK06620214 hypothetical protein; Validated 88.55
PRK05642234 DNA replication initiation factor; Validated 88.44
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 88.05
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 87.92
PRK06871325 DNA polymerase III subunit delta'; Validated 87.9
PRK14086617 dnaA chromosomal replication initiation protein; P 87.77
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 87.4
PRK13341 725 recombination factor protein RarA/unknown domain f 87.33
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 87.13
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 87.05
PRK14951 618 DNA polymerase III subunits gamma and tau; Provisi 86.42
PRK08769319 DNA polymerase III subunit delta'; Validated 86.22
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 86.04
PRK09111 598 DNA polymerase III subunits gamma and tau; Validat 86.01
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 85.91
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 85.77
PRK14969 527 DNA polymerase III subunits gamma and tau; Provisi 85.75
PRK07399314 DNA polymerase III subunit delta'; Validated 85.68
PRK05896 605 DNA polymerase III subunits gamma and tau; Validat 85.35
PRK05629318 hypothetical protein; Validated 85.14
PRK04195 482 replication factor C large subunit; Provisional 84.87
COG1373398 Predicted ATPase (AAA+ superfamily) [General funct 84.8
COG2256436 MGS1 ATPase related to the helicase subunit of the 84.8
PRK04132846 replication factor C small subunit; Provisional 84.22
PRK07993334 DNA polymerase III subunit delta'; Validated 83.9
PRK14953 486 DNA polymerase III subunits gamma and tau; Provisi 83.86
PRK14950 585 DNA polymerase III subunits gamma and tau; Provisi 83.75
COG3899 849 Predicted ATPase [General function prediction only 83.32
PRK06090319 DNA polymerase III subunit delta'; Validated 83.23
PRK06964342 DNA polymerase III subunit delta'; Validated 83.17
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 83.07
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 82.97
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 82.17
PRK09376416 rho transcription termination factor Rho; Provisio 80.67
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9.9e-54  Score=420.95  Aligned_cols=296  Identities=32%  Similarity=0.538  Sum_probs=256.5

Q ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCC
Q 039430            1 HFELKIWICVSVDFGERQIMTKIINSITGEN--QSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGG   78 (308)
Q Consensus         1 ~Fd~~~WV~vs~~~~~~~ll~~il~~l~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~   78 (308)
                      +||.++||+||+.++..+++++|++.++...  ....+.++++..+.+.|++|||||||||||+.  .+|+.+..++|..
T Consensus       209 ~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~  286 (889)
T KOG4658|consen  209 HFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSR  286 (889)
T ss_pred             cCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCc
Confidence            6999999999999999999999999987533  33334578999999999999999999999998  6699999999999


Q ss_pred             CCCcEEEEEecchHHHhh-hccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430           79 ANGSKILVTTRSRKVASI-MGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLG  157 (308)
Q Consensus        79 ~~gs~IlvTTR~~~va~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig  157 (308)
                      .+||||++|||++.|+.. +++.   ..++++.|+++|||+||++.+|......++.++++|++|+++|+|+|||+.++|
T Consensus       287 ~~g~KvvlTTRs~~V~~~~m~~~---~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG  363 (889)
T KOG4658|consen  287 ENGSKVVLTTRSEEVCGRAMGVD---YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLG  363 (889)
T ss_pred             cCCeEEEEEeccHhhhhccccCC---ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHH
Confidence            999999999999999998 7765   889999999999999999999987555566799999999999999999999999


Q ss_pred             hhhcCCCCHHHHHHHHhhhccccc----cccCccchhhhhhhcCCChhhhHHHhhhhcCCCCceeecccc----------
Q 039430          158 SLLYDSTDEHFWEYVRDNEIWRLE----QKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSL----------  223 (308)
Q Consensus       158 ~~L~~~~~~~~w~~~~~~~~~~~~----~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~l----------  223 (308)
                      +.|+.+.+..+|+++.+...+...    +..+.+++++++||+.||+++|.||+|||+||+||.|+.+.|          
T Consensus       364 ~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi  443 (889)
T KOG4658|consen  364 GLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFI  443 (889)
T ss_pred             HHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCc
Confidence            999999999999999987766532    224678999999999999999999999999999999998877          


Q ss_pred             ----------------------------------cceeEEchhHHHHHHHHhc-----cccEEEeCCC-------CCCCC
Q 039430          224 ----------------------------------LFYFKMHDLMHDLALLVAK-----DEFLVVNSDC-------QSIPK  257 (308)
Q Consensus       224 ----------------------------------~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~~-------~~~~~  257 (308)
                                                        ...|+|||+|||+|.++|+     +|++++..+.       ...+.
T Consensus       444 ~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~  523 (889)
T KOG4658|consen  444 DPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWN  523 (889)
T ss_pred             CccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchh
Confidence                                              1689999999999999999     7777776541       12235


Q ss_pred             CeEEEEEEecCCCccccccccCCCCCcceEEEcCCC--CC-CcHHHHHHh
Q 039430          258 RVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDD--EK-TSQSFIESC  304 (308)
Q Consensus       258 ~~r~lsi~~~~~~~~~~~~~~~~~~~lRtL~~~~~~--~~-~~~~~~~~~  304 (308)
                      .+||+|+++++...   ......+++||||+++.+.  .. ++..||..|
T Consensus       524 ~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m  570 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSL  570 (889)
T ss_pred             heeEEEEeccchhh---ccCCCCCCccceEEEeecchhhhhcCHHHHhhC
Confidence            78999999986544   2256778899999998864  33 889998866

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>COG3903 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05629 hypothetical protein; Validated Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3iza_B 1263 Structure Of An Apoptosome-Procaspase-9 Card Comple 2e-04
1z6t_A 591 Structure Of The Apoptotic Protease-activating Fact 2e-04
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1 Bound To Adp Length = 591 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 2e-71
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 7e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-33
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 8e-10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
 Score =  230 bits (588), Expect = 2e-71
 Identities = 62/331 (18%), Positives = 113/331 (34%), Gaps = 66/331 (19%)

Query: 1   HFELKI-WICVSVDFGE------RQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGK-- 51
            F   + W+ V            + + T++    +   +  L+ +  +  LR     K  
Sbjct: 177 CFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHP 236

Query: 52  RYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGL 111
           R LL++D VW+      + F        +  +IL+TTR + V   +             L
Sbjct: 237 RSLLILDDVWDSW--VLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVV-PVESSL 286

Query: 112 PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEY 171
             E  L +       +      +L + A  I+K+C G  L V  +G+LL D  +   WEY
Sbjct: 287 GKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR--WEY 340

Query: 172 VRD---NEIWRLEQKES-----GILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFD---- 219
                 N+ ++  +K S      +  A+ +S + L   +K      SI  KD +      
Sbjct: 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400

Query: 220 -------------------SYSLLF--------YFKMHDLMHDLALLVAKDEFLVVNSDC 252
                              + SLLF         + +HDL  D        +   ++   
Sbjct: 401 CILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHK-- 458

Query: 253 QSIPKRVRHLSFAVANASRNDFSSLLSDLGR 283
           + I +  R+      +  + D     + L  
Sbjct: 459 KIITQFQRYHQPHTLSPDQEDCMYWYNFLAY 489
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 100.0
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.97
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.96
1z6t_A591 APAF-1, apoptotic protease activating factor 1; ca 99.94
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 98.6
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 98.29
2fna_A357 Conserved hypothetical protein; structural genomic 98.03
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 97.97
2v1u_A387 Cell division control protein 6 homolog; DNA repli 97.85
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 97.79
2chg_A226 Replication factor C small subunit; DNA-binding pr 97.58
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 97.49
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 97.28
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 97.19
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 96.03
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 95.77
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 94.85
2chq_A319 Replication factor C small subunit; DNA-binding pr 94.51
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 94.14
1jr3_D343 DNA polymerase III, delta subunit; processivity, p 94.07
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 93.69
3bos_A242 Putative DNA replication factor; P-loop containing 93.62
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 93.16
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 92.53
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 90.48
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 89.45
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 87.34
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 84.52
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 82.4
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 82.07
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 80.06
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-39  Score=308.13  Aligned_cols=251  Identities=15%  Similarity=0.235  Sum_probs=183.2

Q ss_pred             CCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCC-------CCCCCHHHHHHHHHHHcCCc-eEEEEEecCCCCChHHHHH
Q 039430            1 HFELKIWICVSVDF--GERQIMTKIINSITGEN-------QSNLDPDRLQKVLRDSFNGK-RYLLVMDYVWNEDLEAWRK   70 (308)
Q Consensus         1 ~Fd~~~WV~vs~~~--~~~~ll~~il~~l~~~~-------~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~~   70 (308)
                      +|++++||++++.+  ++..++++|+.+++...       ....+.+.++..+++.|+++ ||||||||||+.+...|..
T Consensus       183 ~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~  262 (549)
T 2a5y_B          183 NYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ  262 (549)
T ss_dssp             TBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH
T ss_pred             cCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc
Confidence            69999999999986  89999999999997542       12335677899999999996 9999999999963222321


Q ss_pred             HHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCCh
Q 039430           71 FKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGIL  150 (308)
Q Consensus        71 l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP  150 (308)
                              .+||+||||||++.++..++..  ..+|+|++|+.+|||+||.+.++...  ..+.+++++++|+++|+|+|
T Consensus       263 --------~~gs~ilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlP  330 (549)
T 2a5y_B          263 --------ELRLRCLVTTRDVEISNAASQT--CEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNP  330 (549)
T ss_dssp             --------HTTCEEEEEESBGGGGGGCCSC--EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCH
T ss_pred             --------cCCCEEEEEcCCHHHHHHcCCC--CeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCCh
Confidence                    2799999999999999887521  26799999999999999999987653  24688899999999999999


Q ss_pred             HHHHHHhhhhcCCCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHh-----------hhhcCCCCceee
Q 039430          151 LAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVA-----------YCSIFPKDFEFD  219 (308)
Q Consensus       151 Lai~~ig~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~  219 (308)
                      |||+++|+.|+.+ .+. |...+....+..  ....+..++.+||++||+++|.||+           |||+||+++.|+
T Consensus       331 LAl~~~g~~l~~~-~w~-~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~  406 (549)
T 2a5y_B          331 ATLMMFFKSCEPK-TFE-KMAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP  406 (549)
T ss_dssp             HHHHHHHTTCCSS-SHH-HHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE
T ss_pred             HHHHHHHHHhccc-hHH-HHHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee
Confidence            9999999999865 322 222222222211  3467999999999999999999999           999999998877


Q ss_pred             ----ccc-----------------------c-------------cceeEEchhHHHHHHHHhccccEE----------Ee
Q 039430          220 ----SYS-----------------------L-------------LFYFKMHDLMHDLALLVAKDEFLV----------VN  249 (308)
Q Consensus       220 ----~~~-----------------------l-------------~~~~~mHdlv~~~a~~~~~~e~~~----------~~  249 (308)
                          ...                       |             ..+|+|||+||++|++++.+++..          ..
T Consensus       407 i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~rl~~  486 (549)
T 2a5y_B          407 VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLE  486 (549)
T ss_dssp             HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHHHHHHTTSTTTSSC
T ss_pred             eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111                       1             236999999999999998877641          11


Q ss_pred             CCCCCCCCCeEEEEEEec
Q 039430          250 SDCQSIPKRVRHLSFAVA  267 (308)
Q Consensus       250 ~~~~~~~~~~r~lsi~~~  267 (308)
                      ......+...||++.+..
T Consensus       487 ~~~~~~~~~~r~~~~~~~  504 (549)
T 2a5y_B          487 IGNNNVSVPERHIPSHFQ  504 (549)
T ss_dssp             C-----------------
T ss_pred             HhcCCCCccchhhhhhhh
Confidence            112334566788877654
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 308
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 1e-32
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  119 bits (299), Expect = 1e-32
 Identities = 25/218 (11%), Positives = 58/218 (26%), Gaps = 26/218 (11%)

Query: 1   HFELKIWICVSVDFGERQIMTKIINSIT----------GENQSNLDPDRLQKVLRDSFNG 50
           +++  +W+  S    +          +              +        + +     + 
Sbjct: 75  NYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDR 134

Query: 51  KRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQG 110
              L V D V  E+   W +            + LVTTR  ++++            +  
Sbjct: 135 PNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISNAA--SQTCEFIEVTS 184

Query: 111 LPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWE 170
           L  ++C              +      +  + ++   G    +          T    +E
Sbjct: 185 LEIDECYDFLEAYGMPMPVGEKEE--DVLNKTIELSSGNPATLMMFFKSCEPKT----FE 238

Query: 171 YVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAY 208
            +         +   G+      SY  L   L++CV  
Sbjct: 239 KMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.98
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 96.11
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 94.53
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 93.51
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 90.34
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 89.9
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 89.81
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 88.12
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 83.43
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=2.9e-32  Score=236.69  Aligned_cols=193  Identities=12%  Similarity=0.097  Sum_probs=150.5

Q ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHh---cCCC-------CCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHH
Q 039430            1 HFELKIWICVSVDFGERQIMTKIINSI---TGEN-------QSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRK   70 (308)
Q Consensus         1 ~Fd~~~WV~vs~~~~~~~ll~~il~~l---~~~~-------~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~   70 (308)
                      +|++++||++++.++...+...+...+   +...       ............+.+.+.++|+||||||||+.  +.|+.
T Consensus        75 ~f~~~~Wv~vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~--~~~~~  152 (277)
T d2a5yb3          75 NYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--ETIRW  152 (277)
T ss_dssp             TBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHHHH
T ss_pred             cCceEEEEEecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHH--hhhhh
Confidence            599999999999999887776665543   2211       12223344455678889999999999999987  45654


Q ss_pred             HHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCCh
Q 039430           71 FKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGIL  150 (308)
Q Consensus        71 l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP  150 (308)
                      +.      ..||+||||||+..++..+...  .+.|++++|+.+|||+||+++++...  ..+..++++++|+++|+|+|
T Consensus       153 ~~------~~~srilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~iv~~c~GlP  222 (277)
T d2a5yb3         153 AQ------ELRLRCLVTTRDVEISNAASQT--CEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNP  222 (277)
T ss_dssp             HH------HTTCEEEEEESBGGGGGGCCSC--EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCH
T ss_pred             hc------ccCceEEEEeehHHHHHhcCCC--CceEECCCCCHHHHHHHHHHHhCCcc--CchhhHHHHHHHHHHhCCCH
Confidence            42      2489999999999999876442  26799999999999999999987653  24567889999999999999


Q ss_pred             HHHHHHhhhhcCCCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHhhh
Q 039430          151 LAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYC  209 (308)
Q Consensus       151 Lai~~ig~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~  209 (308)
                      |||+++|+.|+. ++.+.|..+.+....   .....+..++.+||++||+++|+||.++
T Consensus       223 LAl~~ig~~l~~-k~~~~~~~~~~~L~~---~~~~~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         223 ATLMMFFKSCEP-KTFEKMAQLNNKLES---RGLVGVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             HHHHHHHTTCCS-SSHHHHHHHHHHHHH---HCSSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhcc-CCHHHHHHHHHHHhc---CcHHHHHHHHHHHHhcccHHHHHHHHhC
Confidence            999999999986 567888776554322   2346799999999999999999999864
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure