Citrus Sinensis ID: 039451

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MAQFSSISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNLNAHQVAKDRYLGDL
ccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccHHHHHHHHHHccccccccHHcccccccccccccccHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHccccccccEccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHcccccccccHHHccHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHccEEEHHHcHHHcccHHHcccccccccHHHHHHHHHHccccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEHHHcEccccccEEccccHcccccccccccc
MAQFSSISIVLISCSFLTIIQRTQSQLALNYynstcpqfplIMQQVitdkqlsapaTAAGVLRLFLHDclvdgcdasvlitsnafhkserdadvnlplpgdaFDLVTRAKTAlelqcpgvvscsdIISVATRNLLVmvggphykvllgrkdsivsdashvqgnipttnlsLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFnfsktsqsdpamnpQYADRLRKLCENytkqpemsafidvftpgkfdnmYYKNLKhglgllqtdqdiavdgrtkpfvDLYAANETAFFQAFANAMEKLGVYnlkqgndgevrhrcheftnlnahqvAKDRYLGDL
MAQFSSISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAfhkserdadvnlPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQgnipttnlslSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFsktsqsdpamnPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEftnlnahqvakdrylgdl
MAQFSSISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNLNAHQVAKDRYLGDL
*****SISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFS***************RLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNLNAHQV*********
*****SISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF****RDA*VNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCE***KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNL**************
MAQFSSISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNLNAHQVAKDRYLGDL
**QFSSISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNL**************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQFSSISIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNLNAHQVAKDRYLGDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
O48677326 Peroxidase 6 OS=Arabidops yes no 0.883 0.932 0.615 1e-112
Q9FJR1334 Peroxidase 65 OS=Arabidop no no 0.941 0.970 0.551 1e-104
O23609326 Peroxidase 41 OS=Arabidop no no 0.898 0.947 0.550 1e-101
Q9LHA7316 Peroxidase 31 OS=Arabidop no no 0.857 0.933 0.548 2e-97
Q9FL16328 Peroxidase 63 OS=Arabidop no no 0.886 0.929 0.516 8e-95
Q96509330 Peroxidase 55 OS=Arabidop no no 0.898 0.936 0.448 1e-75
Q43873329 Peroxidase 73 OS=Arabidop no no 0.947 0.990 0.413 5e-72
Q9SZE7329 Peroxidase 51 OS=Arabidop no no 0.892 0.933 0.422 5e-70
Q43731329 Peroxidase 50 OS=Arabidop no no 0.877 0.917 0.422 4e-69
Q96510329 Peroxidase 35 OS=Arabidop no no 0.947 0.990 0.395 4e-67
>sp|O48677|PER6_ARATH Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1 Back     alignment and function desciption
 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/307 (61%), Positives = 232/307 (75%), Gaps = 3/307 (0%)

Query: 24  QSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSN 83
           Q+ L+ +YY  TCP+F   + Q++TDKQ++AP TA G LRLF HDC+VDGCDAS+L+ S 
Sbjct: 19  QANLSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASILVAST 78

Query: 84  AFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHY 143
               SERDAD+N  LPGDAFD++TR KTA+EL+CP +VSCSDI+  ATR+L+ MVGGP  
Sbjct: 79  PRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRV 138

Query: 144 KVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCK 203
            V  GRKDS+VSD + V+G +   N+++  II +F S GL+VQEMVALVG HTIGF+HCK
Sbjct: 139 NVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQEMVALVGAHTIGFSHCK 198

Query: 204 EFADRIFNFSKTSQSDPA-MNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKN 262
           EFA RIFN  K+ Q+ P  MNP+YA  LRKLC NYT   +MSAF DVFTPGKFDNMYYKN
Sbjct: 199 EFASRIFN--KSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAFNDVFTPGKFDNMYYKN 256

Query: 263 LKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRH 322
           LKHG GLLQ+D  IA D RT+  VDLYA +ETAFF AFA AMEK+   N+K G  GEVR 
Sbjct: 257 LKHGYGLLQSDHAIAFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRR 316

Query: 323 RCHEFTN 329
           RC ++ +
Sbjct: 317 RCDQYND 323
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q9FJR1|PER65_ARATH Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2 Back     alignment and function description
>sp|O23609|PER41_ARATH Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHA7|PER31_ARATH Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1 Back     alignment and function description
>sp|Q9FL16|PER63_ARATH Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1 Back     alignment and function description
>sp|Q96509|PER55_ARATH Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1 Back     alignment and function description
>sp|Q43873|PER73_ARATH Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZE7|PER51_ARATH Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1 Back     alignment and function description
>sp|Q43731|PER50_ARATH Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1 Back     alignment and function description
>sp|Q96510|PER35_ARATH Peroxidase 35 OS=Arabidopsis thaliana GN=PER35 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
224102683328 predicted protein [Populus trichocarpa] 0.924 0.969 0.669 1e-130
225424781328 PREDICTED: peroxidase 65-like [Vitis vin 0.912 0.957 0.614 1e-120
147794991342 hypothetical protein VITISV_024055 [Viti 0.915 0.921 0.612 1e-120
225457136327 PREDICTED: peroxidase 65 [Vitis vinifera 0.904 0.951 0.617 1e-117
225452562323 PREDICTED: peroxidase 31-like [Vitis vin 0.886 0.944 0.596 1e-114
297845450326 hypothetical protein ARALYDRAFT_889956 [ 0.936 0.987 0.6 1e-113
147852950 465 hypothetical protein VITISV_006141 [Viti 0.883 0.653 0.595 1e-113
357516679329 Peroxidase [Medicago truncatula] gi|3555 0.921 0.963 0.580 1e-112
255540781329 Peroxidase 65 precursor, putative [Ricin 0.895 0.936 0.590 1e-112
224121642321 predicted protein [Populus trichocarpa] 0.915 0.981 0.579 1e-111
>gi|224102683|ref|XP_002312775.1| predicted protein [Populus trichocarpa] gi|222852595|gb|EEE90142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 213/318 (66%), Positives = 265/318 (83%)

Query: 10  VLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDC 69
           +LI   F      ++S+L+++YYN TCPQF  IM+Q+++DKQ+++P TAAGVLRLF HDC
Sbjct: 8   LLILLLFFMSFPCSKSRLSVDYYNKTCPQFASIMEQIVSDKQIASPTTAAGVLRLFFHDC 67

Query: 70  LVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISV 129
           +V+GCD S+LITS +F+K+ERDAD++  +PGDA+DLVTRAKTALELQCPG+VSC+DI++ 
Sbjct: 68  MVEGCDGSLLITSTSFNKAERDADIDQSIPGDAYDLVTRAKTALELQCPGIVSCADILAT 127

Query: 130 ATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMV 189
           A RNL+ MVGGP+Y V LGRKD +VS+AS VQGNI    + LS II +F SKG SVQEMV
Sbjct: 128 AARNLVTMVGGPYYHVRLGRKDGLVSNASLVQGNIAQPTMPLSDIISLFYSKGFSVQEMV 187

Query: 190 ALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDV 249
           ALVG HTIGF+HCKEF++R+FNFSKTS++DPA NP+YA+ LRKLC NYTK P MSA+ DV
Sbjct: 188 ALVGAHTIGFSHCKEFSNRLFNFSKTSETDPAYNPKYAEGLRKLCANYTKDPTMSAYNDV 247

Query: 250 FTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGV 309
            TPGKFDNMYYKNL+ GLGLL TDQ ++VD RTKPFVDLYAANETAFF+AFA+ MEK+ +
Sbjct: 248 MTPGKFDNMYYKNLQRGLGLLSTDQALSVDRRTKPFVDLYAANETAFFEAFAHGMEKVSI 307

Query: 310 YNLKQGNDGEVRHRCHEF 327
           Y +K G  GEVRHRC +F
Sbjct: 308 YKIKTGKKGEVRHRCDQF 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424781|ref|XP_002267024.1| PREDICTED: peroxidase 65-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147794991|emb|CAN74068.1| hypothetical protein VITISV_024055 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225457136|ref|XP_002280359.1| PREDICTED: peroxidase 65 [Vitis vinifera] gi|147811771|emb|CAN68188.1| hypothetical protein VITISV_013676 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452562|ref|XP_002280547.1| PREDICTED: peroxidase 31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297845450|ref|XP_002890606.1| hypothetical protein ARALYDRAFT_889956 [Arabidopsis lyrata subsp. lyrata] gi|297336448|gb|EFH66865.1| hypothetical protein ARALYDRAFT_889956 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147852950|emb|CAN81266.1| hypothetical protein VITISV_006141 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357516679|ref|XP_003628628.1| Peroxidase [Medicago truncatula] gi|355522650|gb|AET03104.1| Peroxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255540781|ref|XP_002511455.1| Peroxidase 65 precursor, putative [Ricinus communis] gi|223550570|gb|EEF52057.1| Peroxidase 65 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224121642|ref|XP_002318634.1| predicted protein [Populus trichocarpa] gi|222859307|gb|EEE96854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2032392326 AT1G24110 [Arabidopsis thalian 0.912 0.963 0.598 8.8e-102
TAIR|locus:2170997334 AT5G47000 [Arabidopsis thalian 0.924 0.952 0.558 2.6e-95
TAIR|locus:2129386326 AT4G17690 [Arabidopsis thalian 0.936 0.987 0.536 3e-92
TAIR|locus:2098308316 AT3G28200 [Arabidopsis thalian 0.892 0.971 0.533 1.1e-87
TAIR|locus:2173757328 AT5G40150 [Arabidopsis thalian 0.924 0.969 0.504 7.7e-87
TAIR|locus:2174693330 AT5G14130 [Arabidopsis thalian 0.892 0.930 0.451 8.9e-70
TAIR|locus:2158227329 RHS19 "root hair specific 19" 0.947 0.990 0.413 1.1e-66
TAIR|locus:2120061329 AT4G37530 [Arabidopsis thalian 0.947 0.990 0.407 2.8e-66
TAIR|locus:2120051329 AT4G37520 [Arabidopsis thalian 0.947 0.990 0.401 3.2e-65
TAIR|locus:2083088329 AT3G49960 [Arabidopsis thalian 0.944 0.987 0.396 4.2e-63
TAIR|locus:2032392 AT1G24110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 191/319 (59%), Positives = 236/319 (73%)

Query:    14 CSFLTIIQRT--QSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLV 71
             C F+ +      Q+ L+ +YY  TCP+F   + Q++TDKQ++AP TA G LRLF HDC+V
Sbjct:     7 CLFILVSSPCLLQANLSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMV 66

Query:    72 DGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVAT 131
             DGCDAS+L+ S     SERDAD+N  LPGDAFD++TR KTA+EL+CP +VSCSDI+  AT
Sbjct:    67 DGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGAT 126

Query:   132 RNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVAL 191
             R+L+ MVGGP   V  GRKDS+VSD + V+G +   N+++  II +F S GL+VQEMVAL
Sbjct:   127 RSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQEMVAL 186

Query:   192 VGGHTIGFAHCKEFADRIFNFSKTSQSDPA-MNPQYADRLRKLCENYTKQPEMSAFIDVF 250
             VG HTIGF+HCKEFA RIFN  K+ Q+ P  MNP+YA  LRKLC NYT   +MSAF DVF
Sbjct:   187 VGAHTIGFSHCKEFASRIFN--KSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAFNDVF 244

Query:   251 TPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVY 310
             TPGKFDNMYYKNLKHG GLLQ+D  IA D RT+  VDLYA +ETAFF AFA AMEK+   
Sbjct:   245 TPGKFDNMYYKNLKHGYGLLQSDHAIAFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEK 304

Query:   311 NLKQGNDGEVRHRCHEFTN 329
             N+K G  GEVR RC ++ +
Sbjct:   305 NVKTGKLGEVRRRCDQYND 323
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2170997 AT5G47000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129386 AT4G17690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098308 AT3G28200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173757 AT5G40150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174693 AT5G14130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158227 RHS19 "root hair specific 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120061 AT4G37530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120051 AT4G37520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083088 AT3G49960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48677PER6_ARATH1, ., 1, 1, ., 1, ., 70.61560.88370.9325yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.946
3rd Layer1.11.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-143
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 7e-68
pfam00141180 pfam00141, peroxidase, Peroxidase 8e-50
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 7e-26
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 3e-22
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 5e-19
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 2e-12
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 3e-09
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 5e-06
cd00692328 cd00692, ligninase, Ligninase and other manganese- 5e-06
pfam00141180 pfam00141, peroxidase, Peroxidase 1e-04
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  406 bits (1046), Expect = e-143
 Identities = 143/299 (47%), Positives = 194/299 (64%), Gaps = 4/299 (1%)

Query: 26  QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
           QL++ +Y+ +CP    I++ V+     + P  AA +LRL  HDC V GCDASVL+ S A 
Sbjct: 1   QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTAN 60

Query: 86  HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
           + SE+DA  NL L    FD++   K ALE  CPGVVSC+DI+++A R+ +V+ GGP Y+V
Sbjct: 61  NTSEKDAPPNLSL--RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEV 118

Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
            LGR+D  VS A+ V GN+P+   S+SQ+I +F SKGL+V ++VAL G HTIG AHC  F
Sbjct: 119 PLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSF 177

Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKH 265
           +DR++NFS T   DP ++P YA +LRK C       +    +D  TP  FDN YYKNL  
Sbjct: 178 SDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGG-DDDTLVPLDPGTPNTFDNSYYKNLLA 236

Query: 266 GLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRC 324
           G GLL +DQ +  D RT+  V+ YAAN+ AFF+ FA AM K+G   +  G+ GE+R  C
Sbjct: 237 GRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNC 295

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 100.0
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.97
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.44
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-107  Score=785.96  Aligned_cols=299  Identities=36%  Similarity=0.664  Sum_probs=283.6

Q ss_pred             cccccCccccccCCCChHHHHHHHHHHHHhhCCCchhhHHHHHhhccCCCCCCcceecccCCCCcCccccCCCCCCCcch
Q 039451           23 TQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDA  102 (344)
Q Consensus        23 ~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg  102 (344)
                      +.++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++   .+||++++|.  ++||
T Consensus        21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~--~l~G   95 (324)
T PLN03030         21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL--LLRG   95 (324)
T ss_pred             hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc--Ccch
Confidence            3467999999999999999999999999999999999999999999999999999999865   4699999999  6799


Q ss_pred             hhHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCC
Q 039451          103 FDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKG  182 (344)
Q Consensus       103 ~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~G  182 (344)
                      |++|+.||++||++||++|||||||||||||||+++|||.|+|++||||+++|.+.++. +||.|+.++++|++.|+++|
T Consensus        96 f~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~G  174 (324)
T PLN03030         96 YDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKG  174 (324)
T ss_pred             HHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999877665 89999999999999999999


Q ss_pred             CChhhhhhhccCcccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHH
Q 039451          183 LSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTS-QSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYK  261 (344)
Q Consensus       183 lt~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~-~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~  261 (344)
                      |+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|++.|++.||..+ ++.+.+++|+.||.+|||+||+
T Consensus       175 l~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~-~~~~~~~lD~~Tp~~FDn~Yy~  253 (324)
T PLN03030        175 LNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNG-DGSRRIALDTGSSNRFDASFFS  253 (324)
T ss_pred             CCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCC-CCCccccCCCCCCcccccHHHH
Confidence            9999999999999999999999999999999875 5799999999999999999633 2334688999999999999999


Q ss_pred             HhhhcCccccchhhhhcCCCCHHHHHHhhhCH----HHHHHHHHHHHHHhhcCCCCCCCCccccccccccc
Q 039451          262 NLKHGLGLLQTDQDIAVDGRTKPFVDLYAANE----TAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFT  328 (344)
Q Consensus       262 ~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n  328 (344)
                      ||++++|+|+|||+|+.|++|+++|++||.|+    +.|+++|++||+|||+|+|+||++|||||+|+.+|
T Consensus       254 nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        254 NLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             HHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence            99999999999999999999999999999875    59999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 1e-58
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 3e-58
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 1e-54
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 3e-54
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 3e-54
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 3e-54
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 3e-54
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 4e-54
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 4e-54
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 5e-54
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 6e-54
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 9e-54
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 3e-53
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 2e-52
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 6e-52
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 2e-51
1sch_A294 Peanut Peroxidase Length = 294 2e-51
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 2e-51
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 3e-48
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 2e-13
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 2e-13
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 2e-13
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 2e-13
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 2e-13
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 2e-13
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 2e-13
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 2e-13
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 2e-13
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 2e-13
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 3e-13
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 8e-13
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 2e-09
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 1e-08
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 1e-08
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 2e-08
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 3e-05
1jdr_A294 Crystal Structure Of A Proximal Domain Potassium Bi 4e-05
1sog_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 2e-04
1ccl_A291 Probing The Strength And Character Of An Asp-His-X 2e-04
2v23_A296 Structure Of Cytochrome C Peroxidase Mutant N184r Y 2e-04
2v2e_A294 Structure Of Isoniazid (Inh) Bound To Cytochrome C 2e-04
2xil_A294 The Structure Of Cytochrome C Peroxidase Compound I 2e-04
1cci_A294 How Flexible Are Proteins? Trapping Of A Flexible L 3e-04
1krj_A294 Engineering Calcium-Binding Site Into Cytochrome C 3e-04
1cpg_A296 A Cation Binding Motif Stabilizes The Compound I Ra 3e-04
1stq_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 3e-04
1cck_A291 Altering Substrate Specificity Of Cytochrome C Pero 3e-04
1bem_A291 Interaction Between Proximal And Distals Regions Of 4e-04
1s6v_A294 Structure Of A Cytochrome C Peroxidase-Cytochrome C 4e-04
2pcb_A296 Crystal Structure Of A Complex Between Electron Tra 4e-04
3r98_A293 Joint Neutron And X-Ray Structure Of Cytochrome C P 4e-04
2gb8_A294 Solution Structure Of The Complex Between Yeast Iso 4e-04
1kok_A294 Crystal Structure Of Mesopone Cytochrome C Peroxida 4e-04
1dcc_A296 2.2 Angstrom Structure Of Oxyperoxidase: A Model Fo 4e-04
1kxn_A289 Crystal Structure Of Cytochrome C Peroxidase With A 4e-04
2xj5_A294 The Structure Of Cytochrome C Peroxidase Compound I 4e-04
1bek_A291 Effect Of Unnatural Heme Substitution On Kinetics O 4e-04
1bep_A291 Effect Of Unnatural Heme Substitution On Kinetics O 4e-04
1ebe_A294 Laue Diffraction Study On The Structure Of Cytochro 4e-04
4ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 4e-04
5ccp_A296 Histidine 52 Is A Critical Residue For Rapid Format 4e-04
4a7m_A296 Cytochrome C Peroxidase S81w Mutant Length = 296 4e-04
1dj1_A291 Crystal Structure Of R48a Mutant Of Cytochrome C Pe 4e-04
1kxm_A290 Crystal Structure Of Cytochrome C Peroxidase With A 4e-04
1cca_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 4e-04
1bva_A294 Manganese Binding Mutant In Cytochrome C Peroxidase 4e-04
3exb_A295 Crystal Structure Of Cytochrome C Peroxidase With A 4e-04
6ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 4e-04
1mk8_A294 Crystal Structure Of A Mutant Cytochrome C Peroxida 5e-04
7ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 5e-04
3e2n_A287 Engineering Ascorbate Peroxidase Activity Into Cyto 5e-04
1bej_A291 Interaction Between Proximal And Distals Regions Of 5e-04
4ccx_A294 Altering Substrate Specificity At The Heme Edge Of 5e-04
2rbu_X292 Cytochrome C Peroxidase In Complex With Cyclopentan 5e-04
2anz_A294 Cytochrome C Peroxidase In Complex With 2,6-Diamino 5e-04
3m23_A291 Crystallographic And Single Crystal Spectral Analys 5e-04
1cpd_A296 A Cation Binding Motif Stabilizes The Compound I Ra 5e-04
2cep_A296 Role Of Met-230 In Intramolecular Electron Transfer 6e-04
2aqd_A294 Cytochrome C Peroxidase (Ccp) In Complex With 2,5- 6e-04
2x07_A293 Cytochrome C Peroxidase: Engineered Ascorbate Bindi 6e-04
3ccx_A294 Altering Substrate Specificity At The Heme Edge Of 6e-04
4a71_A296 Cytochrome C Peroxidase In Complex With Phenol Leng 6e-04
1beq_A291 Interaction Between Proximal And Distals Regions Of 6e-04
4a78_A296 Cytochrome C Peroxidase M119w In Complex With Guiac 6e-04
1cyf_A296 Identifying The Physiological Electron Transfer Sit 8e-04
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 118/300 (39%), Positives = 173/300 (57%), Gaps = 4/300 (1%)
Query: 27  LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFH 86
           L + +YN++CP    ++QQ +     +    A G++R+  HDC V GCDASVL+ S A +
Sbjct: 2   LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 87  KSERDADVNLP-LPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
            +E+DA  N P L G  F+++T AK+A+E  CP  VSC+DI++ A R+   + G   Y+V
Sbjct: 62  TAEKDAIPNNPSLRG--FEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
             GR+D  VS AS     IP+   + +Q+I+ F +K L+  EMV L G H+IG AHC  F
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSF 179
Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLC-ENYTKQPEMSAFIDVFTPGKFDNMYYKNLK 264
            +R++NF+  S  DP ++P YA  LR  C  N T+   ++  +D+ TP   DNMYY  ++
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 265 HGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRC 324
             LGLL +DQ +  +      V   A N TA+   FA AM K+G   +  G  GE+R  C
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding Variant Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m2 Length = 294 Back     alignment and structure
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a Length = 296 Back     alignment and structure
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C Peroxidase Mutant N184r Y36a Length = 294 Back     alignment and structure
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop Length = 294 Back     alignment and structure
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m3 Length = 294 Back     alignment and structure
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase Towards A Small Molecular Substrate Peroxidase By Substituting Tyrosine For Phe 202 Length = 291 Back     alignment and structure
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 294 Back     alignment and structure
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 296 Back     alignment and structure
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C Peroxidase Length = 293 Back     alignment and structure
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1- Cytochrome C And Yeast Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (Mpccp) Length = 294 Back     alignment and structure
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The Enzyme:peroxide Complex Length = 296 Back     alignment and structure
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 289 Back     alignment and structure
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii Length = 294 Back     alignment and structure
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of Cytochrome C Peroxidase Compound I Length = 296 Back     alignment and structure
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant Length = 296 Back     alignment and structure
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 290 Back     alignment and structure
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Pathway Excised In A Complex With A Peptide Wire Length = 295 Back     alignment and structure
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase Showing A Novel Trp-Tyr Covalent Cross-Link Length = 294 Back     alignment and structure
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome C Peroxidase Length = 287 Back     alignment and structure
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With Cyclopentane-Carboximidamide Length = 292 Back     alignment and structure
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With 2,6-Diaminopyridine Length = 294 Back     alignment and structure
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of The Peroxidase Ferryl Intermediate Length = 291 Back     alignment and structure
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer Between The Oxyferryl Heme And Trp 191 In Cytochrome C Peroxidase Compound Ii Length = 296 Back     alignment and structure
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5- Diaminopyridine Length = 294 Back     alignment and structure
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site Length = 293 Back     alignment and structure
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol Length = 296 Back     alignment and structure
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol Length = 296 Back     alignment and structure
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of Cytochrome C Peroxidase By Structure-Based Engineering Length = 296 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-138
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-135
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-133
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-132
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-131
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-130
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-130
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 2e-71
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 3e-69
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 5e-64
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 8e-62
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 5e-58
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 3e-56
2e39_A344 Peroxidase; heme protein, coordination geometry of 2e-55
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 1e-33
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 4e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
 Score =  393 bits (1013), Expect = e-138
 Identities = 118/300 (39%), Positives = 173/300 (57%), Gaps = 4/300 (1%)

Query: 27  LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFH 86
           L + +YN++CP    ++QQ +     +    A G++R+  HDC V GCDASVL+ S A +
Sbjct: 2   LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61

Query: 87  KSERDADVNLP-LPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
            +E+DA  N P L G  F+++T AK+A+E  CP  VSC+DI++ A R+   + G   Y+V
Sbjct: 62  TAEKDAIPNNPSLRG--FEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119

Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
             GR+D  VS AS     IP+   + +Q+I+ F +K L+  EMV L G H+IG AHC  F
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSF 179

Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLC-ENYTKQPEMSAFIDVFTPGKFDNMYYKNLK 264
            +R++NF+  S  DP ++P YA  LR  C  N T+   ++  +D+ TP   DNMYY  ++
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239

Query: 265 HGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRC 324
             LGLL +DQ +  +      V   A N TA+   FA AM K+G   +  G  GE+R  C
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=7e-111  Score=805.66  Aligned_cols=301  Identities=38%  Similarity=0.690  Sum_probs=292.1

Q ss_pred             cCccccccCCCChHHHHHHHHHHHHhhCCCchhhHHHHHhhccCCCCCCcceecccCCCCcCccccCCCCCCCcchhhHH
Q 039451           27 LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLV  106 (344)
Q Consensus        27 L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~~~I  106 (344)
                      |+++||++|||++|+|||++|++++.+||+++|++||||||||||+||||||||++++++.+||++++|.+ ++|||++|
T Consensus         2 L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~-~lrgf~vi   80 (304)
T 3hdl_A            2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNP-SLRGFEVI   80 (304)
T ss_dssp             CEETTTTTTCTTHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTT-TCCCHHHH
T ss_pred             CccChhhCcCcCHHHHHHHHHHHHHHhCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCccc-chHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999988889999999996 57999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCCCChh
Q 039451          107 TRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQ  186 (344)
Q Consensus       107 d~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Glt~~  186 (344)
                      |.||++||+.||++||||||||||||+||+++|||.|+|++||||++++...+++.+||+|+.++++|++.|++|||+++
T Consensus        81 d~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~  160 (304)
T 3hdl_A           81 TAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTAD  160 (304)
T ss_dssp             HHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999998877777899999999999999999999999


Q ss_pred             hhhhhccCcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCC--CCCcccccCCCCCccchHhHHHhh
Q 039451          187 EMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ--PEMSAFIDVFTPGKFDNMYYKNLK  264 (344)
Q Consensus       187 dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~--~~~~~~lD~~Tp~~FDN~Yy~~l~  264 (344)
                      ||||||||||||++||.+|.+|||||+|++.+||+||+.|++.|++.||.++ +  +++.++||+.||.+|||+||++|+
T Consensus       161 d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~-~~~~~~~~~lD~~TP~~FDN~Yy~nL~  239 (304)
T 3hdl_A          161 EMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANS-TRFTPITVSLDIITPSVLDNMYYTGVQ  239 (304)
T ss_dssp             HHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTC-CTTSCCEEESCSSSTTSCSTHHHHHHH
T ss_pred             HhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCC-CCCCccccCCCCCCcccccHHHHHHHH
Confidence            9999999999999999999999999999988999999999999999999865 5  677899999999999999999999


Q ss_pred             hcCccccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCcccccccccccC
Q 039451          265 HGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTN  329 (344)
Q Consensus       265 ~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n~  329 (344)
                      .++|||+|||+|+.|++|+++|++||.|++.|+++|++||+||++|+|+||++||||++|+++|+
T Consensus       240 ~~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N~  304 (304)
T 3hdl_A          240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVNS  304 (304)
T ss_dssp             TTCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC-
T ss_pred             hCcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999993
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 344
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-103
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-100
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-98
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 4e-96
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 2e-95
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-94
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 4e-58
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 3e-54
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 6e-51
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 7e-38
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 4e-35
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 3e-34
d2ccaa1410 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Myco 8e-07
d1u2ka_292 a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholder 2e-06
d1itka1406 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Arch 4e-06
d1mwva1406 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burk 5e-06
d1ub2a2294 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Syn 2e-05
d1itka2308 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Arc 5e-05
d1mwva2308 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Bur 1e-04
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  303 bits (776), Expect = e-103
 Identities = 113/301 (37%), Positives = 168/301 (55%), Gaps = 4/301 (1%)

Query: 26  QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
           QL   +Y  TCP    I+  VI D   + P   A ++RL  HDC V GCD SVL+ +   
Sbjct: 1   QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60

Query: 86  HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
            +SE+DA  N+       D+V   KTA+E  CP  VSC+DI+++A     V+ GGP + V
Sbjct: 61  IESEQDALPNINS-IRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPV 119

Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
            LGR+DS+ ++ +    N+P    +L+Q+   F  +GL+  ++V L GGHT G A C  F
Sbjct: 120 PLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179

Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKH 265
            +R++NFS T   DP +N  Y + LR  C       +    +D+ TP +FDN YY NL  
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARC-PQNATGDNLTNLDLSTPDQFDNRYYSNLLQ 238

Query: 266 GLGLLQTDQDIAVD--GRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHR 323
             GLLQ+DQ++       T P V+ +++N+  FF  F  +M K+G   +  G++GE+R +
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298

Query: 324 C 324
           C
Sbjct: 299 C 299
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Length = 410 Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 292 Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 406 Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 406 Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Length = 294 Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 308 Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 308 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query344
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.98
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=4.1e-105  Score=765.79  Aligned_cols=302  Identities=37%  Similarity=0.683  Sum_probs=292.4

Q ss_pred             ccCccccccCCCChHHHHHHHHHHHHhhCCCchhhHHHHHhhccCCCCCCcceecccCCCCcCccccCCCCCCCcchhhH
Q 039451           26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDL  105 (344)
Q Consensus        26 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~~~  105 (344)
                      ||+.+||++|||++|+|||++|++++.+||+++|+||||+||||||+||||||||+++.++.+|+++++|.+ +++||++
T Consensus         1 qL~~~~Y~~sCp~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~-~~~g~~~   79 (304)
T d1fhfa_           1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNIN-SIRGLDV   79 (304)
T ss_dssp             CCBTTTTTTTSTTHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTT-TCCCHHH
T ss_pred             CCCCccccccCcCHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCcccc-cchhHHH
Confidence            799999999999999999999999999999999999999999999999999999999888889999999998 5899999


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCCCCh
Q 039451          106 VTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSV  185 (344)
Q Consensus       106 Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Glt~  185 (344)
                      ||.||++||..||++||||||||||||+||+++|||.|+|++||+|+++|+..++..+||.|+.++++|++.|++|||+.
T Consensus        80 id~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~  159 (304)
T d1fhfa_          80 VNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNT  159 (304)
T ss_dssp             HHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999999999999999999887777789999999999999999999999


Q ss_pred             hhhhhhccCcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHHhhh
Q 039451          186 QEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKH  265 (344)
Q Consensus       186 ~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~  265 (344)
                      +|||||+||||||++||.+|.+|+|+|.+++.+||++++.|+..|+..||.++ ...+.+++|+.||.+|||+||++++.
T Consensus       160 ~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~-~~~~~~~~d~~tp~~fDn~Yy~~l~~  238 (304)
T d1fhfa_         160 LDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNA-TGDNLTNLDLSTPDQFDNRYYSNLLQ  238 (304)
T ss_dssp             HHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSC-SSCCEEESCSSSTTSCSTHHHHHHHT
T ss_pred             HHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCC-CCCcccccCCCCCCccccHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999766 55567889999999999999999999


Q ss_pred             cCccccchhhhhcCC--CCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCcccccccccccC
Q 039451          266 GLGLLQTDQDIAVDG--RTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTN  329 (344)
Q Consensus       266 ~~glL~SD~~L~~d~--~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n~  329 (344)
                      ++|+|+|||+|+.||  +|+++|++||.|+++|+++|++||+||++|+|+||.+||||++|+++|.
T Consensus       239 ~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             TCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCCC
T ss_pred             cCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcCC
Confidence            999999999999996  7999999999999999999999999999999999999999999999994
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure